HEADER MEMBRANE PROTEIN/ANTIBIOTIC 17-APR-13 4K7Q TITLE CRYSTAL STRUCTURE OF ACRB COMPLEXED WITH LINEZOLID AT 3.5 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACRIFLAVINE RESISTANCE PROTEIN B; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: ACRB, ACRE, B0462, JW0451; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INNER MEMBRANE RESISTANCE-NODULATION-CELL DIVISION EFFLUX PUMP, KEYWDS 2 MEMBRANE PROTEIN-ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.W.HUNG,H.B.KIM,S.MURAKAMI,G.GUPTA,C.Y.KIM,T.C.TERWILLIGER REVDAT 3 28-FEB-24 4K7Q 1 REMARK SEQADV REVDAT 2 22-JUL-15 4K7Q 1 HETSYN REVDAT 1 03-JUL-13 4K7Q 0 JRNL AUTH L.W.HUNG,H.B.KIM,S.MURAKAMI,G.GUPTA,C.Y.KIM,T.C.TERWILLIGER JRNL TITL CRYSTAL STRUCTURE OF ACRB COMPLEXED WITH LINEZOLID AT 3.5 JRNL TITL 2 ANGSTROM RESOLUTION. JRNL REF J.STRUCT.FUNCT.GENOM. V. 14 71 2013 JRNL REFN ISSN 1345-711X JRNL PMID 23673416 JRNL DOI 10.1007/S10969-013-9154-X REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 25678 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.255 REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.304 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1788 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 3.6200 - 3.5000 0.90 1041 107 0.3589 0.4399 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.490 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 7843 REMARK 3 ANGLE : 0.767 10650 REMARK 3 CHIRALITY : 0.048 1259 REMARK 3 PLANARITY : 0.005 1357 REMARK 3 DIHEDRAL : 14.076 2831 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.4817 41.7101 325.3785 REMARK 3 T TENSOR REMARK 3 T11: 0.6546 T22: 0.9353 REMARK 3 T33: 1.0704 T12: 0.0873 REMARK 3 T13: -0.0134 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 1.6368 L22: 0.5901 REMARK 3 L33: 2.1393 L12: 0.2875 REMARK 3 L13: -0.0400 L23: 0.5264 REMARK 3 S TENSOR REMARK 3 S11: 0.1275 S12: 0.1945 S13: 0.1995 REMARK 3 S21: -0.0371 S22: 0.3006 S23: -0.1075 REMARK 3 S31: -0.0682 S32: 0.0568 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 153 THROUGH 391 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.0249 27.4286 331.9973 REMARK 3 T TENSOR REMARK 3 T11: 0.8427 T22: 1.5769 REMARK 3 T33: 0.7855 T12: 0.1931 REMARK 3 T13: 0.0745 T23: 0.1388 REMARK 3 L TENSOR REMARK 3 L11: 0.0437 L22: 0.8861 REMARK 3 L33: 0.2218 L12: 0.1259 REMARK 3 L13: 1.6953 L23: -0.4245 REMARK 3 S TENSOR REMARK 3 S11: 0.1011 S12: 0.4711 S13: 0.0292 REMARK 3 S21: -0.2371 S22: -0.3345 S23: 0.0052 REMARK 3 S31: 0.4349 S32: 0.2957 S33: -0.0031 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 392 THROUGH 657 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.0538 43.6717 299.1903 REMARK 3 T TENSOR REMARK 3 T11: 1.0382 T22: 1.8773 REMARK 3 T33: 1.4112 T12: -0.1504 REMARK 3 T13: -0.2191 T23: 0.4449 REMARK 3 L TENSOR REMARK 3 L11: -0.2393 L22: 1.1124 REMARK 3 L33: 0.6792 L12: 0.0450 REMARK 3 L13: -0.0046 L23: -0.2824 REMARK 3 S TENSOR REMARK 3 S11: 0.1224 S12: 0.4047 S13: 0.3514 REMARK 3 S21: -0.5817 S22: -0.0520 S23: 0.0340 REMARK 3 S31: 0.0968 S32: 0.4465 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 658 THROUGH 708 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.2084 59.6993 330.5081 REMARK 3 T TENSOR REMARK 3 T11: 1.2357 T22: 1.2923 REMARK 3 T33: 1.4216 T12: 0.1040 REMARK 3 T13: -0.3662 T23: 0.1858 REMARK 3 L TENSOR REMARK 3 L11: 0.3419 L22: 0.6585 REMARK 3 L33: 0.2186 L12: 0.1643 REMARK 3 L13: 0.2333 L23: 0.1307 REMARK 3 S TENSOR REMARK 3 S11: -0.5180 S12: 0.5550 S13: 1.9369 REMARK 3 S21: 0.2609 S22: 0.7891 S23: 1.5002 REMARK 3 S31: -0.5357 S32: 0.0107 S33: 0.0135 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 709 THROUGH 1036 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.1109 53.0051 314.8585 REMARK 3 T TENSOR REMARK 3 T11: 0.9001 T22: 1.3120 REMARK 3 T33: 1.1939 T12: 0.2873 REMARK 3 T13: -0.1836 T23: 0.0901 REMARK 3 L TENSOR REMARK 3 L11: 0.5027 L22: 0.7998 REMARK 3 L33: 2.1767 L12: 0.2757 REMARK 3 L13: -0.5536 L23: 0.2617 REMARK 3 S TENSOR REMARK 3 S11: -0.0116 S12: 0.3916 S13: 0.3212 REMARK 3 S21: -0.3736 S22: -0.0991 S23: 0.4975 REMARK 3 S31: -0.8439 S32: -0.6402 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4K7Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078996. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26634 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.78800 REMARK 200 R SYM FOR SHELL (I) : 0.78800 REMARK 200 FOR SHELL : 2.260 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NACL 8% PEG 4K 0.1M NAPHOSPHATE REMARK 280 PH 6.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 72.34250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.76696 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 173.11900 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 72.34250 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 41.76696 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 173.11900 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 72.34250 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 41.76696 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 173.11900 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 72.34250 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 41.76696 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 173.11900 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 72.34250 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 41.76696 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 173.11900 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 72.34250 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 41.76696 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 173.11900 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 83.53392 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 346.23800 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 83.53392 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 346.23800 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 83.53392 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 346.23800 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 83.53392 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 346.23800 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 83.53392 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 346.23800 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 83.53392 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 346.23800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 112220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 144.68500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 72.34250 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 125.30089 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ASN A 3 REMARK 465 PHE A 4 REMARK 465 PHE A 5 REMARK 465 ILE A 6 REMARK 465 PRO A 499 REMARK 465 ILE A 500 REMARK 465 ALA A 501 REMARK 465 LYS A 502 REMARK 465 GLY A 503 REMARK 465 ASP A 504 REMARK 465 HIS A 505 REMARK 465 GLY A 506 REMARK 465 GLU A 507 REMARK 465 GLY A 508 REMARK 465 LYS A 509 REMARK 465 LYS A 510 REMARK 465 GLY A 511 REMARK 465 PHE A 512 REMARK 465 ASP A 711 REMARK 465 GLN A 865 REMARK 465 GLU A 866 REMARK 465 ARG A 867 REMARK 465 LEU A 868 REMARK 465 ASN A 1037 REMARK 465 GLU A 1038 REMARK 465 ASP A 1039 REMARK 465 ILE A 1040 REMARK 465 GLU A 1041 REMARK 465 HIS A 1042 REMARK 465 SER A 1043 REMARK 465 HIS A 1044 REMARK 465 THR A 1045 REMARK 465 VAL A 1046 REMARK 465 ASP A 1047 REMARK 465 HIS A 1048 REMARK 465 HIS A 1049 REMARK 465 HIS A 1050 REMARK 465 HIS A 1051 REMARK 465 HIS A 1052 REMARK 465 HIS A 1053 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 21 -70.22 -54.05 REMARK 500 ALA A 33 -169.90 -69.53 REMARK 500 GLN A 34 -140.41 -80.85 REMARK 500 PRO A 50 108.44 -49.15 REMARK 500 ASN A 74 72.72 53.41 REMARK 500 ASP A 99 95.91 -69.72 REMARK 500 LEU A 137 -57.01 -142.11 REMARK 500 THR A 145 -68.01 -124.50 REMARK 500 ASP A 146 -94.61 -70.23 REMARK 500 ALA A 160 20.67 -140.84 REMARK 500 ASN A 161 -22.11 -163.99 REMARK 500 ASP A 174 93.43 -160.30 REMARK 500 ALA A 236 -136.55 -89.29 REMARK 500 THR A 241 -61.68 -120.16 REMARK 500 ALA A 299 -95.74 60.31 REMARK 500 LYS A 312 38.51 -88.60 REMARK 500 TYR A 327 81.01 56.61 REMARK 500 LEU A 357 32.64 -82.99 REMARK 500 PHE A 358 -48.93 -147.69 REMARK 500 PRO A 426 55.76 -114.58 REMARK 500 PRO A 427 -164.92 -103.01 REMARK 500 PHE A 458 84.89 -61.47 REMARK 500 THR A 463 33.17 -94.52 REMARK 500 ILE A 466 -83.28 -58.92 REMARK 500 ARG A 468 -70.71 -55.92 REMARK 500 SER A 471 -62.64 -93.24 REMARK 500 ILE A 487 -69.43 -125.70 REMARK 500 ALA A 494 -141.85 -81.50 REMARK 500 THR A 495 -88.83 49.34 REMARK 500 LEU A 497 -56.14 -136.12 REMARK 500 HIS A 525 -91.69 -74.26 REMARK 500 THR A 538 -64.34 -162.44 REMARK 500 PHE A 563 -74.10 -99.61 REMARK 500 PRO A 579 -171.42 -65.19 REMARK 500 PRO A 669 97.14 -64.26 REMARK 500 ALA A 670 142.45 -38.51 REMARK 500 ILE A 671 -176.88 65.18 REMARK 500 GLU A 673 -3.17 -56.93 REMARK 500 THR A 676 -37.05 -138.19 REMARK 500 ALA A 677 173.16 61.47 REMARK 500 ALA A 688 -158.62 -77.86 REMARK 500 LEU A 713 -158.36 -131.79 REMARK 500 PRO A 718 -169.39 -78.56 REMARK 500 ASP A 723 97.88 61.32 REMARK 500 VAL A 759 -71.37 -95.11 REMARK 500 MET A 774 -103.63 -132.61 REMARK 500 ARG A 780 34.10 -164.06 REMARK 500 SER A 836 -161.39 -116.42 REMARK 500 THR A 860 -140.23 -116.41 REMARK 500 SER A 863 45.46 -78.42 REMARK 500 REMARK 500 THIS ENTRY HAS 68 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZLD A 1101 DBREF 4K7Q A 1 1049 UNP P31224 ACRB_ECOLI 1 1049 SEQADV 4K7Q HIS A 1050 UNP P31224 EXPRESSION TAG SEQADV 4K7Q HIS A 1051 UNP P31224 EXPRESSION TAG SEQADV 4K7Q HIS A 1052 UNP P31224 EXPRESSION TAG SEQADV 4K7Q HIS A 1053 UNP P31224 EXPRESSION TAG SEQRES 1 A 1053 MET PRO ASN PHE PHE ILE ASP ARG PRO ILE PHE ALA TRP SEQRES 2 A 1053 VAL ILE ALA ILE ILE ILE MET LEU ALA GLY GLY LEU ALA SEQRES 3 A 1053 ILE LEU LYS LEU PRO VAL ALA GLN TYR PRO THR ILE ALA SEQRES 4 A 1053 PRO PRO ALA VAL THR ILE SER ALA SER TYR PRO GLY ALA SEQRES 5 A 1053 ASP ALA LYS THR VAL GLN ASP THR VAL THR GLN VAL ILE SEQRES 6 A 1053 GLU GLN ASN MET ASN GLY ILE ASP ASN LEU MET TYR MET SEQRES 7 A 1053 SER SER ASN SER ASP SER THR GLY THR VAL GLN ILE THR SEQRES 8 A 1053 LEU THR PHE GLU SER GLY THR ASP ALA ASP ILE ALA GLN SEQRES 9 A 1053 VAL GLN VAL GLN ASN LYS LEU GLN LEU ALA MET PRO LEU SEQRES 10 A 1053 LEU PRO GLN GLU VAL GLN GLN GLN GLY VAL SER VAL GLU SEQRES 11 A 1053 LYS SER SER SER SER PHE LEU MET VAL VAL GLY VAL ILE SEQRES 12 A 1053 ASN THR ASP GLY THR MET THR GLN GLU ASP ILE SER ASP SEQRES 13 A 1053 TYR VAL ALA ALA ASN MET LYS ASP ALA ILE SER ARG THR SEQRES 14 A 1053 SER GLY VAL GLY ASP VAL GLN LEU PHE GLY SER GLN TYR SEQRES 15 A 1053 ALA MET ARG ILE TRP MET ASN PRO ASN GLU LEU ASN LYS SEQRES 16 A 1053 PHE GLN LEU THR PRO VAL ASP VAL ILE THR ALA ILE LYS SEQRES 17 A 1053 ALA GLN ASN ALA GLN VAL ALA ALA GLY GLN LEU GLY GLY SEQRES 18 A 1053 THR PRO PRO VAL LYS GLY GLN GLN LEU ASN ALA SER ILE SEQRES 19 A 1053 ILE ALA GLN THR ARG LEU THR SER THR GLU GLU PHE GLY SEQRES 20 A 1053 LYS ILE LEU LEU LYS VAL ASN GLN ASP GLY SER ARG VAL SEQRES 21 A 1053 LEU LEU ARG ASP VAL ALA LYS ILE GLU LEU GLY GLY GLU SEQRES 22 A 1053 ASN TYR ASP ILE ILE ALA GLU PHE ASN GLY GLN PRO ALA SEQRES 23 A 1053 SER GLY LEU GLY ILE LYS LEU ALA THR GLY ALA ASN ALA SEQRES 24 A 1053 LEU ASP THR ALA ALA ALA ILE ARG ALA GLU LEU ALA LYS SEQRES 25 A 1053 MET GLU PRO PHE PHE PRO SER GLY LEU LYS ILE VAL TYR SEQRES 26 A 1053 PRO TYR ASP THR THR PRO PHE VAL LYS ILE SER ILE HIS SEQRES 27 A 1053 GLU VAL VAL LYS THR LEU VAL GLU ALA ILE ILE LEU VAL SEQRES 28 A 1053 PHE LEU VAL MET TYR LEU PHE LEU GLN ASN PHE ARG ALA SEQRES 29 A 1053 THR LEU ILE PRO THR ILE ALA VAL PRO VAL VAL LEU LEU SEQRES 30 A 1053 GLY THR PHE ALA VAL LEU ALA ALA PHE GLY PHE SER ILE SEQRES 31 A 1053 ASN THR LEU THR MET PHE GLY MET VAL LEU ALA ILE GLY SEQRES 32 A 1053 LEU LEU VAL ASP ASP ALA ILE VAL VAL VAL GLU ASN VAL SEQRES 33 A 1053 GLU ARG VAL MET ALA GLU GLU GLY LEU PRO PRO LYS GLU SEQRES 34 A 1053 ALA THR ARG LYS SER MET GLY GLN ILE GLN GLY ALA LEU SEQRES 35 A 1053 VAL GLY ILE ALA MET VAL LEU SER ALA VAL PHE VAL PRO SEQRES 36 A 1053 MET ALA PHE PHE GLY GLY SER THR GLY ALA ILE TYR ARG SEQRES 37 A 1053 GLN PHE SER ILE THR ILE VAL SER ALA MET ALA LEU SER SEQRES 38 A 1053 VAL LEU VAL ALA LEU ILE LEU THR PRO ALA LEU CYS ALA SEQRES 39 A 1053 THR MET LEU LYS PRO ILE ALA LYS GLY ASP HIS GLY GLU SEQRES 40 A 1053 GLY LYS LYS GLY PHE PHE GLY TRP PHE ASN ARG MET PHE SEQRES 41 A 1053 GLU LYS SER THR HIS HIS TYR THR ASP SER VAL GLY GLY SEQRES 42 A 1053 ILE LEU ARG SER THR GLY ARG TYR LEU VAL LEU TYR LEU SEQRES 43 A 1053 ILE ILE VAL VAL GLY MET ALA TYR LEU PHE VAL ARG LEU SEQRES 44 A 1053 PRO SER SER PHE LEU PRO ASP GLU ASP GLN GLY VAL PHE SEQRES 45 A 1053 MET THR MET VAL GLN LEU PRO ALA GLY ALA THR GLN GLU SEQRES 46 A 1053 ARG THR GLN LYS VAL LEU ASN GLU VAL THR HIS TYR TYR SEQRES 47 A 1053 LEU THR LYS GLU LYS ASN ASN VAL GLU SER VAL PHE ALA SEQRES 48 A 1053 VAL ASN GLY PHE GLY PHE ALA GLY ARG GLY GLN ASN THR SEQRES 49 A 1053 GLY ILE ALA PHE VAL SER LEU LYS ASP TRP ALA ASP ARG SEQRES 50 A 1053 PRO GLY GLU GLU ASN LYS VAL GLU ALA ILE THR MET ARG SEQRES 51 A 1053 ALA THR ARG ALA PHE SER GLN ILE LYS ASP ALA MET VAL SEQRES 52 A 1053 PHE ALA PHE ASN LEU PRO ALA ILE VAL GLU LEU GLY THR SEQRES 53 A 1053 ALA THR GLY PHE ASP PHE GLU LEU ILE ASP GLN ALA GLY SEQRES 54 A 1053 LEU GLY HIS GLU LYS LEU THR GLN ALA ARG ASN GLN LEU SEQRES 55 A 1053 LEU ALA GLU ALA ALA LYS HIS PRO ASP MET LEU THR SER SEQRES 56 A 1053 VAL ARG PRO ASN GLY LEU GLU ASP THR PRO GLN PHE LYS SEQRES 57 A 1053 ILE ASP ILE ASP GLN GLU LYS ALA GLN ALA LEU GLY VAL SEQRES 58 A 1053 SER ILE ASN ASP ILE ASN THR THR LEU GLY ALA ALA TRP SEQRES 59 A 1053 GLY GLY SER TYR VAL ASN ASP PHE ILE ASP ARG GLY ARG SEQRES 60 A 1053 VAL LYS LYS VAL TYR VAL MET SER GLU ALA LYS TYR ARG SEQRES 61 A 1053 MET LEU PRO ASP ASP ILE GLY ASP TRP TYR VAL ARG ALA SEQRES 62 A 1053 ALA ASP GLY GLN MET VAL PRO PHE SER ALA PHE SER SER SEQRES 63 A 1053 SER ARG TRP GLU TYR GLY SER PRO ARG LEU GLU ARG TYR SEQRES 64 A 1053 ASN GLY LEU PRO SER MET GLU ILE LEU GLY GLN ALA ALA SEQRES 65 A 1053 PRO GLY LYS SER THR GLY GLU ALA MET GLU LEU MET GLU SEQRES 66 A 1053 GLN LEU ALA SER LYS LEU PRO THR GLY VAL GLY TYR ASP SEQRES 67 A 1053 TRP THR GLY MET SER TYR GLN GLU ARG LEU SER GLY ASN SEQRES 68 A 1053 GLN ALA PRO SER LEU TYR ALA ILE SER LEU ILE VAL VAL SEQRES 69 A 1053 PHE LEU CYS LEU ALA ALA LEU TYR GLU SER TRP SER ILE SEQRES 70 A 1053 PRO PHE SER VAL MET LEU VAL VAL PRO LEU GLY VAL ILE SEQRES 71 A 1053 GLY ALA LEU LEU ALA ALA THR PHE ARG GLY LEU THR ASN SEQRES 72 A 1053 ASP VAL TYR PHE GLN VAL GLY LEU LEU THR THR ILE GLY SEQRES 73 A 1053 LEU SER ALA LYS ASN ALA ILE LEU ILE VAL GLU PHE ALA SEQRES 74 A 1053 LYS ASP LEU MET ASP LYS GLU GLY LYS GLY LEU ILE GLU SEQRES 75 A 1053 ALA THR LEU ASP ALA VAL ARG MET ARG LEU ARG PRO ILE SEQRES 76 A 1053 LEU MET THR SER LEU ALA PHE ILE LEU GLY VAL MET PRO SEQRES 77 A 1053 LEU VAL ILE SER THR GLY ALA GLY SER GLY ALA GLN ASN SEQRES 78 A 1053 ALA VAL GLY THR GLY VAL MET GLY GLY MET VAL THR ALA SEQRES 79 A 1053 THR VAL LEU ALA ILE PHE PHE VAL PRO VAL PHE PHE VAL SEQRES 80 A 1053 VAL VAL ARG ARG ARG PHE SER ARG LYS ASN GLU ASP ILE SEQRES 81 A 1053 GLU HIS SER HIS THR VAL ASP HIS HIS HIS HIS HIS HIS HET ZLD A1101 24 HETNAM ZLD N-{[(5S)-3-(3-FLUORO-4-MORPHOLIN-4-YLPHENYL)-2-OXO-1,3- HETNAM 2 ZLD OXAZOLIDIN-5-YL]METHYL}ACETAMIDE HETSYN ZLD LINEZOLID FORMUL 2 ZLD C16 H20 F N3 O4 HELIX 1 1 ARG A 8 LYS A 29 1 22 HELIX 2 2 ASP A 53 ASP A 59 1 7 HELIX 3 3 VAL A 61 ASN A 68 1 8 HELIX 4 4 ASP A 99 GLN A 112 1 14 HELIX 5 5 ALA A 114 LEU A 118 5 5 HELIX 6 6 PRO A 119 GLN A 124 1 6 HELIX 7 7 THR A 150 ALA A 159 1 10 HELIX 8 8 MET A 162 SER A 167 1 6 HELIX 9 9 ARG A 168 VAL A 172 5 5 HELIX 10 10 ASN A 189 PHE A 196 1 8 HELIX 11 11 THR A 199 ASN A 211 1 13 HELIX 12 12 SER A 242 LYS A 248 1 7 HELIX 13 13 LEU A 262 VAL A 265 1 4 HELIX 14 14 ALA A 299 LYS A 312 1 14 HELIX 15 15 MET A 313 PHE A 317 5 5 HELIX 16 16 THR A 329 LEU A 357 1 29 HELIX 17 17 ARG A 363 THR A 365 5 3 HELIX 18 18 LEU A 366 GLY A 387 1 22 HELIX 19 19 THR A 392 GLU A 423 1 32 HELIX 20 20 PRO A 427 MET A 435 1 9 HELIX 21 21 MET A 435 PHE A 458 1 24 HELIX 22 22 THR A 463 ALA A 485 1 23 HELIX 23 23 ILE A 487 ALA A 494 1 8 HELIX 24 24 GLY A 514 HIS A 525 1 12 HELIX 25 25 HIS A 525 SER A 537 1 13 HELIX 26 26 THR A 538 ARG A 558 1 21 HELIX 27 27 THR A 583 LYS A 601 1 19 HELIX 28 28 ASP A 633 ARG A 637 5 5 HELIX 29 29 GLY A 639 ASN A 642 5 4 HELIX 30 30 LYS A 643 LYS A 659 1 17 HELIX 31 31 GLY A 691 HIS A 709 1 19 HELIX 32 32 ASP A 732 GLY A 740 1 9 HELIX 33 33 SER A 742 GLY A 755 1 14 HELIX 34 34 GLU A 776 ARG A 780 5 5 HELIX 35 35 LEU A 782 ASP A 788 5 7 HELIX 36 36 PHE A 801 SER A 805 1 5 HELIX 37 37 SER A 836 SER A 849 1 14 HELIX 38 38 GLN A 872 LEU A 881 1 10 HELIX 39 39 ILE A 882 LEU A 888 1 7 HELIX 40 40 SER A 896 LEU A 903 5 8 HELIX 41 41 VAL A 904 ARG A 919 1 16 HELIX 42 42 ASP A 924 LYS A 955 1 32 HELIX 43 43 GLU A 962 ARG A 969 1 8 HELIX 44 44 ARG A 971 VAL A 986 1 16 HELIX 45 45 GLY A 998 THR A 1013 1 16 HELIX 46 46 PHE A 1025 PHE A 1033 1 9 SHEET 1 A 5 VAL A 127 LYS A 131 0 SHEET 2 A 5 ALA A 42 SER A 48 -1 N THR A 44 O GLU A 130 SHEET 3 A 5 THR A 87 PHE A 94 -1 O ILE A 90 N ILE A 45 SHEET 4 A 5 LEU A 75 ASP A 83 -1 N MET A 76 O THR A 93 SHEET 5 A 5 ARG A 815 TYR A 819 -1 O ARG A 818 N SER A 80 SHEET 1 B 4 GLN A 176 LEU A 177 0 SHEET 2 B 4 GLN A 284 LYS A 292 -1 O GLY A 290 N GLN A 176 SHEET 3 B 4 PHE A 136 ASN A 144 -1 N VAL A 142 O SER A 287 SHEET 4 B 4 LEU A 321 VAL A 324 -1 O LYS A 322 N ILE A 143 SHEET 1 C 7 GLN A 176 LEU A 177 0 SHEET 2 C 7 GLN A 284 LYS A 292 -1 O GLY A 290 N GLN A 176 SHEET 3 C 7 ILE A 278 PHE A 281 -1 N ALA A 279 O ALA A 286 SHEET 4 C 7 VAL A 606 PHE A 615 -1 O ASN A 613 N ILE A 278 SHEET 5 C 7 ARG A 620 LEU A 631 -1 O ILE A 626 N VAL A 612 SHEET 6 C 7 VAL A 571 GLN A 577 -1 N VAL A 576 O GLY A 625 SHEET 7 C 7 MET A 662 PHE A 666 -1 O MET A 662 N GLN A 577 SHEET 1 D 4 ALA A 266 GLY A 272 0 SHEET 2 D 4 TYR A 182 MET A 188 -1 N TRP A 187 O LYS A 267 SHEET 3 D 4 ARG A 767 VAL A 773 1 O TYR A 772 N ILE A 186 SHEET 4 D 4 SER A 757 ASP A 764 -1 N PHE A 762 O LYS A 769 SHEET 1 E 2 GLN A 218 LEU A 219 0 SHEET 2 E 2 ALA A 232 SER A 233 -1 O ALA A 232 N LEU A 219 SHEET 1 F 2 LEU A 250 VAL A 253 0 SHEET 2 F 2 ARG A 259 LEU A 261 -1 O VAL A 260 N LYS A 252 SHEET 1 G 4 SER A 715 PRO A 718 0 SHEET 2 G 4 SER A 824 GLN A 830 -1 O LEU A 828 N ARG A 717 SHEET 3 G 4 GLY A 679 ASP A 686 -1 N LEU A 684 O MET A 825 SHEET 4 G 4 VAL A 855 TRP A 859 -1 O GLY A 856 N ILE A 685 SHEET 1 H 2 THR A 724 ILE A 729 0 SHEET 2 H 2 SER A 807 GLY A 812 -1 O GLU A 810 N GLN A 726 SHEET 1 I 2 TYR A 790 ARG A 792 0 SHEET 2 I 2 MET A 798 PRO A 800 -1 O VAL A 799 N VAL A 791 SITE 1 AC1 2 ALA A 385 PHE A 386 CRYST1 144.685 144.685 519.357 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006912 0.003990 0.000000 0.00000 SCALE2 0.000000 0.007981 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001925 0.00000