HEADER MEMBRANE PROTEIN/ANTIBIOTIC 17-APR-13 4K7Q
TITLE CRYSTAL STRUCTURE OF ACRB COMPLEXED WITH LINEZOLID AT 3.5 RESOLUTION
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ACRIFLAVINE RESISTANCE PROTEIN B;
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI;
SOURCE 3 ORGANISM_TAXID: 83333;
SOURCE 4 STRAIN: K12;
SOURCE 5 GENE: ACRB, ACRE, B0462, JW0451;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS INNER MEMBRANE RESISTANCE-NODULATION-CELL DIVISION EFFLUX PUMP,
KEYWDS 2 MEMBRANE PROTEIN-ANTIBIOTIC COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR L.W.HUNG,H.B.KIM,S.MURAKAMI,G.GUPTA,C.Y.KIM,T.C.TERWILLIGER
REVDAT 3 28-FEB-24 4K7Q 1 REMARK SEQADV
REVDAT 2 22-JUL-15 4K7Q 1 HETSYN
REVDAT 1 03-JUL-13 4K7Q 0
JRNL AUTH L.W.HUNG,H.B.KIM,S.MURAKAMI,G.GUPTA,C.Y.KIM,T.C.TERWILLIGER
JRNL TITL CRYSTAL STRUCTURE OF ACRB COMPLEXED WITH LINEZOLID AT 3.5
JRNL TITL 2 ANGSTROM RESOLUTION.
JRNL REF J.STRUCT.FUNCT.GENOM. V. 14 71 2013
JRNL REFN ISSN 1345-711X
JRNL PMID 23673416
JRNL DOI 10.1007/S10969-013-9154-X
REMARK 2
REMARK 2 RESOLUTION. 3.50 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE)
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.59
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 3 NUMBER OF REFLECTIONS : 25678
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.255
REMARK 3 R VALUE (WORKING SET) : 0.251
REMARK 3 FREE R VALUE : 0.304
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.960
REMARK 3 FREE R VALUE TEST SET COUNT : 1788
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 3.6200 - 3.5000 0.90 1041 107 0.3589 0.4399
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.490
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.610
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.003 7843
REMARK 3 ANGLE : 0.767 10650
REMARK 3 CHIRALITY : 0.048 1259
REMARK 3 PLANARITY : 0.005 1357
REMARK 3 DIHEDRAL : 14.076 2831
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 5
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 152 )
REMARK 3 ORIGIN FOR THE GROUP (A): 57.4817 41.7101 325.3785
REMARK 3 T TENSOR
REMARK 3 T11: 0.6546 T22: 0.9353
REMARK 3 T33: 1.0704 T12: 0.0873
REMARK 3 T13: -0.0134 T23: 0.0109
REMARK 3 L TENSOR
REMARK 3 L11: 1.6368 L22: 0.5901
REMARK 3 L33: 2.1393 L12: 0.2875
REMARK 3 L13: -0.0400 L23: 0.5264
REMARK 3 S TENSOR
REMARK 3 S11: 0.1275 S12: 0.1945 S13: 0.1995
REMARK 3 S21: -0.0371 S22: 0.3006 S23: -0.1075
REMARK 3 S31: -0.0682 S32: 0.0568 S33: -0.0001
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 153 THROUGH 391 )
REMARK 3 ORIGIN FOR THE GROUP (A): 52.0249 27.4286 331.9973
REMARK 3 T TENSOR
REMARK 3 T11: 0.8427 T22: 1.5769
REMARK 3 T33: 0.7855 T12: 0.1931
REMARK 3 T13: 0.0745 T23: 0.1388
REMARK 3 L TENSOR
REMARK 3 L11: 0.0437 L22: 0.8861
REMARK 3 L33: 0.2218 L12: 0.1259
REMARK 3 L13: 1.6953 L23: -0.4245
REMARK 3 S TENSOR
REMARK 3 S11: 0.1011 S12: 0.4711 S13: 0.0292
REMARK 3 S21: -0.2371 S22: -0.3345 S23: 0.0052
REMARK 3 S31: 0.4349 S32: 0.2957 S33: -0.0031
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 392 THROUGH 657 )
REMARK 3 ORIGIN FOR THE GROUP (A): 39.0538 43.6717 299.1903
REMARK 3 T TENSOR
REMARK 3 T11: 1.0382 T22: 1.8773
REMARK 3 T33: 1.4112 T12: -0.1504
REMARK 3 T13: -0.2191 T23: 0.4449
REMARK 3 L TENSOR
REMARK 3 L11: -0.2393 L22: 1.1124
REMARK 3 L33: 0.6792 L12: 0.0450
REMARK 3 L13: -0.0046 L23: -0.2824
REMARK 3 S TENSOR
REMARK 3 S11: 0.1224 S12: 0.4047 S13: 0.3514
REMARK 3 S21: -0.5817 S22: -0.0520 S23: 0.0340
REMARK 3 S31: 0.0968 S32: 0.4465 S33: 0.0000
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 658 THROUGH 708 )
REMARK 3 ORIGIN FOR THE GROUP (A): 41.2084 59.6993 330.5081
REMARK 3 T TENSOR
REMARK 3 T11: 1.2357 T22: 1.2923
REMARK 3 T33: 1.4216 T12: 0.1040
REMARK 3 T13: -0.3662 T23: 0.1858
REMARK 3 L TENSOR
REMARK 3 L11: 0.3419 L22: 0.6585
REMARK 3 L33: 0.2186 L12: 0.1643
REMARK 3 L13: 0.2333 L23: 0.1307
REMARK 3 S TENSOR
REMARK 3 S11: -0.5180 S12: 0.5550 S13: 1.9369
REMARK 3 S21: 0.2609 S22: 0.7891 S23: 1.5002
REMARK 3 S31: -0.5357 S32: 0.0107 S33: 0.0135
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 709 THROUGH 1036 )
REMARK 3 ORIGIN FOR THE GROUP (A): 45.1109 53.0051 314.8585
REMARK 3 T TENSOR
REMARK 3 T11: 0.9001 T22: 1.3120
REMARK 3 T33: 1.1939 T12: 0.2873
REMARK 3 T13: -0.1836 T23: 0.0901
REMARK 3 L TENSOR
REMARK 3 L11: 0.5027 L22: 0.7998
REMARK 3 L33: 2.1767 L12: 0.2757
REMARK 3 L13: -0.5536 L23: 0.2617
REMARK 3 S TENSOR
REMARK 3 S11: -0.0116 S12: 0.3916 S13: 0.3212
REMARK 3 S21: -0.3736 S22: -0.0991 S23: 0.4975
REMARK 3 S31: -0.8439 S32: -0.6402 S33: -0.0000
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 4K7Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-13.
REMARK 100 THE DEPOSITION ID IS D_1000078996.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 28-JAN-13
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.2
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ALS
REMARK 200 BEAMLINE : 5.0.2
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.0
REMARK 200 MONOCHROMATOR : SI 111
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : SCALEPACK
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26634
REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8
REMARK 200 DATA REDUNDANCY : NULL
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.56
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 5.90
REMARK 200 R MERGE FOR SHELL (I) : 0.78800
REMARK 200 R SYM FOR SHELL (I) : 0.78800
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.260
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHENIX
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 73.14
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.58
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NACL 8% PEG 4K 0.1M NAPHOSPHATE
REMARK 280 PH 6.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z
REMARK 290 3555 -X+Y,-X,Z
REMARK 290 4555 Y,X,-Z
REMARK 290 5555 X-Y,-Y,-Z
REMARK 290 6555 -X,-X+Y,-Z
REMARK 290 7555 X+2/3,Y+1/3,Z+1/3
REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3
REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3
REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3
REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3
REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3
REMARK 290 13555 X+1/3,Y+2/3,Z+2/3
REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3
REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3
REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3
REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3
REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 72.34250
REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.76696
REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 173.11900
REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 72.34250
REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 41.76696
REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 173.11900
REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 72.34250
REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 41.76696
REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 173.11900
REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 72.34250
REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 41.76696
REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 173.11900
REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 72.34250
REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 41.76696
REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 173.11900
REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 72.34250
REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 41.76696
REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 173.11900
REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 83.53392
REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 346.23800
REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 83.53392
REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 346.23800
REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 83.53392
REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 346.23800
REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 83.53392
REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 346.23800
REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 83.53392
REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 346.23800
REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 83.53392
REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 346.23800
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 19850 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 112220 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 144.68500
REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 72.34250
REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 125.30089
REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 PRO A 2
REMARK 465 ASN A 3
REMARK 465 PHE A 4
REMARK 465 PHE A 5
REMARK 465 ILE A 6
REMARK 465 PRO A 499
REMARK 465 ILE A 500
REMARK 465 ALA A 501
REMARK 465 LYS A 502
REMARK 465 GLY A 503
REMARK 465 ASP A 504
REMARK 465 HIS A 505
REMARK 465 GLY A 506
REMARK 465 GLU A 507
REMARK 465 GLY A 508
REMARK 465 LYS A 509
REMARK 465 LYS A 510
REMARK 465 GLY A 511
REMARK 465 PHE A 512
REMARK 465 ASP A 711
REMARK 465 GLN A 865
REMARK 465 GLU A 866
REMARK 465 ARG A 867
REMARK 465 LEU A 868
REMARK 465 ASN A 1037
REMARK 465 GLU A 1038
REMARK 465 ASP A 1039
REMARK 465 ILE A 1040
REMARK 465 GLU A 1041
REMARK 465 HIS A 1042
REMARK 465 SER A 1043
REMARK 465 HIS A 1044
REMARK 465 THR A 1045
REMARK 465 VAL A 1046
REMARK 465 ASP A 1047
REMARK 465 HIS A 1048
REMARK 465 HIS A 1049
REMARK 465 HIS A 1050
REMARK 465 HIS A 1051
REMARK 465 HIS A 1052
REMARK 465 HIS A 1053
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LEU A 21 -70.22 -54.05
REMARK 500 ALA A 33 -169.90 -69.53
REMARK 500 GLN A 34 -140.41 -80.85
REMARK 500 PRO A 50 108.44 -49.15
REMARK 500 ASN A 74 72.72 53.41
REMARK 500 ASP A 99 95.91 -69.72
REMARK 500 LEU A 137 -57.01 -142.11
REMARK 500 THR A 145 -68.01 -124.50
REMARK 500 ASP A 146 -94.61 -70.23
REMARK 500 ALA A 160 20.67 -140.84
REMARK 500 ASN A 161 -22.11 -163.99
REMARK 500 ASP A 174 93.43 -160.30
REMARK 500 ALA A 236 -136.55 -89.29
REMARK 500 THR A 241 -61.68 -120.16
REMARK 500 ALA A 299 -95.74 60.31
REMARK 500 LYS A 312 38.51 -88.60
REMARK 500 TYR A 327 81.01 56.61
REMARK 500 LEU A 357 32.64 -82.99
REMARK 500 PHE A 358 -48.93 -147.69
REMARK 500 PRO A 426 55.76 -114.58
REMARK 500 PRO A 427 -164.92 -103.01
REMARK 500 PHE A 458 84.89 -61.47
REMARK 500 THR A 463 33.17 -94.52
REMARK 500 ILE A 466 -83.28 -58.92
REMARK 500 ARG A 468 -70.71 -55.92
REMARK 500 SER A 471 -62.64 -93.24
REMARK 500 ILE A 487 -69.43 -125.70
REMARK 500 ALA A 494 -141.85 -81.50
REMARK 500 THR A 495 -88.83 49.34
REMARK 500 LEU A 497 -56.14 -136.12
REMARK 500 HIS A 525 -91.69 -74.26
REMARK 500 THR A 538 -64.34 -162.44
REMARK 500 PHE A 563 -74.10 -99.61
REMARK 500 PRO A 579 -171.42 -65.19
REMARK 500 PRO A 669 97.14 -64.26
REMARK 500 ALA A 670 142.45 -38.51
REMARK 500 ILE A 671 -176.88 65.18
REMARK 500 GLU A 673 -3.17 -56.93
REMARK 500 THR A 676 -37.05 -138.19
REMARK 500 ALA A 677 173.16 61.47
REMARK 500 ALA A 688 -158.62 -77.86
REMARK 500 LEU A 713 -158.36 -131.79
REMARK 500 PRO A 718 -169.39 -78.56
REMARK 500 ASP A 723 97.88 61.32
REMARK 500 VAL A 759 -71.37 -95.11
REMARK 500 MET A 774 -103.63 -132.61
REMARK 500 ARG A 780 34.10 -164.06
REMARK 500 SER A 836 -161.39 -116.42
REMARK 500 THR A 860 -140.23 -116.41
REMARK 500 SER A 863 45.46 -78.42
REMARK 500
REMARK 500 THIS ENTRY HAS 68 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZLD A 1101
DBREF 4K7Q A 1 1049 UNP P31224 ACRB_ECOLI 1 1049
SEQADV 4K7Q HIS A 1050 UNP P31224 EXPRESSION TAG
SEQADV 4K7Q HIS A 1051 UNP P31224 EXPRESSION TAG
SEQADV 4K7Q HIS A 1052 UNP P31224 EXPRESSION TAG
SEQADV 4K7Q HIS A 1053 UNP P31224 EXPRESSION TAG
SEQRES 1 A 1053 MET PRO ASN PHE PHE ILE ASP ARG PRO ILE PHE ALA TRP
SEQRES 2 A 1053 VAL ILE ALA ILE ILE ILE MET LEU ALA GLY GLY LEU ALA
SEQRES 3 A 1053 ILE LEU LYS LEU PRO VAL ALA GLN TYR PRO THR ILE ALA
SEQRES 4 A 1053 PRO PRO ALA VAL THR ILE SER ALA SER TYR PRO GLY ALA
SEQRES 5 A 1053 ASP ALA LYS THR VAL GLN ASP THR VAL THR GLN VAL ILE
SEQRES 6 A 1053 GLU GLN ASN MET ASN GLY ILE ASP ASN LEU MET TYR MET
SEQRES 7 A 1053 SER SER ASN SER ASP SER THR GLY THR VAL GLN ILE THR
SEQRES 8 A 1053 LEU THR PHE GLU SER GLY THR ASP ALA ASP ILE ALA GLN
SEQRES 9 A 1053 VAL GLN VAL GLN ASN LYS LEU GLN LEU ALA MET PRO LEU
SEQRES 10 A 1053 LEU PRO GLN GLU VAL GLN GLN GLN GLY VAL SER VAL GLU
SEQRES 11 A 1053 LYS SER SER SER SER PHE LEU MET VAL VAL GLY VAL ILE
SEQRES 12 A 1053 ASN THR ASP GLY THR MET THR GLN GLU ASP ILE SER ASP
SEQRES 13 A 1053 TYR VAL ALA ALA ASN MET LYS ASP ALA ILE SER ARG THR
SEQRES 14 A 1053 SER GLY VAL GLY ASP VAL GLN LEU PHE GLY SER GLN TYR
SEQRES 15 A 1053 ALA MET ARG ILE TRP MET ASN PRO ASN GLU LEU ASN LYS
SEQRES 16 A 1053 PHE GLN LEU THR PRO VAL ASP VAL ILE THR ALA ILE LYS
SEQRES 17 A 1053 ALA GLN ASN ALA GLN VAL ALA ALA GLY GLN LEU GLY GLY
SEQRES 18 A 1053 THR PRO PRO VAL LYS GLY GLN GLN LEU ASN ALA SER ILE
SEQRES 19 A 1053 ILE ALA GLN THR ARG LEU THR SER THR GLU GLU PHE GLY
SEQRES 20 A 1053 LYS ILE LEU LEU LYS VAL ASN GLN ASP GLY SER ARG VAL
SEQRES 21 A 1053 LEU LEU ARG ASP VAL ALA LYS ILE GLU LEU GLY GLY GLU
SEQRES 22 A 1053 ASN TYR ASP ILE ILE ALA GLU PHE ASN GLY GLN PRO ALA
SEQRES 23 A 1053 SER GLY LEU GLY ILE LYS LEU ALA THR GLY ALA ASN ALA
SEQRES 24 A 1053 LEU ASP THR ALA ALA ALA ILE ARG ALA GLU LEU ALA LYS
SEQRES 25 A 1053 MET GLU PRO PHE PHE PRO SER GLY LEU LYS ILE VAL TYR
SEQRES 26 A 1053 PRO TYR ASP THR THR PRO PHE VAL LYS ILE SER ILE HIS
SEQRES 27 A 1053 GLU VAL VAL LYS THR LEU VAL GLU ALA ILE ILE LEU VAL
SEQRES 28 A 1053 PHE LEU VAL MET TYR LEU PHE LEU GLN ASN PHE ARG ALA
SEQRES 29 A 1053 THR LEU ILE PRO THR ILE ALA VAL PRO VAL VAL LEU LEU
SEQRES 30 A 1053 GLY THR PHE ALA VAL LEU ALA ALA PHE GLY PHE SER ILE
SEQRES 31 A 1053 ASN THR LEU THR MET PHE GLY MET VAL LEU ALA ILE GLY
SEQRES 32 A 1053 LEU LEU VAL ASP ASP ALA ILE VAL VAL VAL GLU ASN VAL
SEQRES 33 A 1053 GLU ARG VAL MET ALA GLU GLU GLY LEU PRO PRO LYS GLU
SEQRES 34 A 1053 ALA THR ARG LYS SER MET GLY GLN ILE GLN GLY ALA LEU
SEQRES 35 A 1053 VAL GLY ILE ALA MET VAL LEU SER ALA VAL PHE VAL PRO
SEQRES 36 A 1053 MET ALA PHE PHE GLY GLY SER THR GLY ALA ILE TYR ARG
SEQRES 37 A 1053 GLN PHE SER ILE THR ILE VAL SER ALA MET ALA LEU SER
SEQRES 38 A 1053 VAL LEU VAL ALA LEU ILE LEU THR PRO ALA LEU CYS ALA
SEQRES 39 A 1053 THR MET LEU LYS PRO ILE ALA LYS GLY ASP HIS GLY GLU
SEQRES 40 A 1053 GLY LYS LYS GLY PHE PHE GLY TRP PHE ASN ARG MET PHE
SEQRES 41 A 1053 GLU LYS SER THR HIS HIS TYR THR ASP SER VAL GLY GLY
SEQRES 42 A 1053 ILE LEU ARG SER THR GLY ARG TYR LEU VAL LEU TYR LEU
SEQRES 43 A 1053 ILE ILE VAL VAL GLY MET ALA TYR LEU PHE VAL ARG LEU
SEQRES 44 A 1053 PRO SER SER PHE LEU PRO ASP GLU ASP GLN GLY VAL PHE
SEQRES 45 A 1053 MET THR MET VAL GLN LEU PRO ALA GLY ALA THR GLN GLU
SEQRES 46 A 1053 ARG THR GLN LYS VAL LEU ASN GLU VAL THR HIS TYR TYR
SEQRES 47 A 1053 LEU THR LYS GLU LYS ASN ASN VAL GLU SER VAL PHE ALA
SEQRES 48 A 1053 VAL ASN GLY PHE GLY PHE ALA GLY ARG GLY GLN ASN THR
SEQRES 49 A 1053 GLY ILE ALA PHE VAL SER LEU LYS ASP TRP ALA ASP ARG
SEQRES 50 A 1053 PRO GLY GLU GLU ASN LYS VAL GLU ALA ILE THR MET ARG
SEQRES 51 A 1053 ALA THR ARG ALA PHE SER GLN ILE LYS ASP ALA MET VAL
SEQRES 52 A 1053 PHE ALA PHE ASN LEU PRO ALA ILE VAL GLU LEU GLY THR
SEQRES 53 A 1053 ALA THR GLY PHE ASP PHE GLU LEU ILE ASP GLN ALA GLY
SEQRES 54 A 1053 LEU GLY HIS GLU LYS LEU THR GLN ALA ARG ASN GLN LEU
SEQRES 55 A 1053 LEU ALA GLU ALA ALA LYS HIS PRO ASP MET LEU THR SER
SEQRES 56 A 1053 VAL ARG PRO ASN GLY LEU GLU ASP THR PRO GLN PHE LYS
SEQRES 57 A 1053 ILE ASP ILE ASP GLN GLU LYS ALA GLN ALA LEU GLY VAL
SEQRES 58 A 1053 SER ILE ASN ASP ILE ASN THR THR LEU GLY ALA ALA TRP
SEQRES 59 A 1053 GLY GLY SER TYR VAL ASN ASP PHE ILE ASP ARG GLY ARG
SEQRES 60 A 1053 VAL LYS LYS VAL TYR VAL MET SER GLU ALA LYS TYR ARG
SEQRES 61 A 1053 MET LEU PRO ASP ASP ILE GLY ASP TRP TYR VAL ARG ALA
SEQRES 62 A 1053 ALA ASP GLY GLN MET VAL PRO PHE SER ALA PHE SER SER
SEQRES 63 A 1053 SER ARG TRP GLU TYR GLY SER PRO ARG LEU GLU ARG TYR
SEQRES 64 A 1053 ASN GLY LEU PRO SER MET GLU ILE LEU GLY GLN ALA ALA
SEQRES 65 A 1053 PRO GLY LYS SER THR GLY GLU ALA MET GLU LEU MET GLU
SEQRES 66 A 1053 GLN LEU ALA SER LYS LEU PRO THR GLY VAL GLY TYR ASP
SEQRES 67 A 1053 TRP THR GLY MET SER TYR GLN GLU ARG LEU SER GLY ASN
SEQRES 68 A 1053 GLN ALA PRO SER LEU TYR ALA ILE SER LEU ILE VAL VAL
SEQRES 69 A 1053 PHE LEU CYS LEU ALA ALA LEU TYR GLU SER TRP SER ILE
SEQRES 70 A 1053 PRO PHE SER VAL MET LEU VAL VAL PRO LEU GLY VAL ILE
SEQRES 71 A 1053 GLY ALA LEU LEU ALA ALA THR PHE ARG GLY LEU THR ASN
SEQRES 72 A 1053 ASP VAL TYR PHE GLN VAL GLY LEU LEU THR THR ILE GLY
SEQRES 73 A 1053 LEU SER ALA LYS ASN ALA ILE LEU ILE VAL GLU PHE ALA
SEQRES 74 A 1053 LYS ASP LEU MET ASP LYS GLU GLY LYS GLY LEU ILE GLU
SEQRES 75 A 1053 ALA THR LEU ASP ALA VAL ARG MET ARG LEU ARG PRO ILE
SEQRES 76 A 1053 LEU MET THR SER LEU ALA PHE ILE LEU GLY VAL MET PRO
SEQRES 77 A 1053 LEU VAL ILE SER THR GLY ALA GLY SER GLY ALA GLN ASN
SEQRES 78 A 1053 ALA VAL GLY THR GLY VAL MET GLY GLY MET VAL THR ALA
SEQRES 79 A 1053 THR VAL LEU ALA ILE PHE PHE VAL PRO VAL PHE PHE VAL
SEQRES 80 A 1053 VAL VAL ARG ARG ARG PHE SER ARG LYS ASN GLU ASP ILE
SEQRES 81 A 1053 GLU HIS SER HIS THR VAL ASP HIS HIS HIS HIS HIS HIS
HET ZLD A1101 24
HETNAM ZLD N-{[(5S)-3-(3-FLUORO-4-MORPHOLIN-4-YLPHENYL)-2-OXO-1,3-
HETNAM 2 ZLD OXAZOLIDIN-5-YL]METHYL}ACETAMIDE
HETSYN ZLD LINEZOLID
FORMUL 2 ZLD C16 H20 F N3 O4
HELIX 1 1 ARG A 8 LYS A 29 1 22
HELIX 2 2 ASP A 53 ASP A 59 1 7
HELIX 3 3 VAL A 61 ASN A 68 1 8
HELIX 4 4 ASP A 99 GLN A 112 1 14
HELIX 5 5 ALA A 114 LEU A 118 5 5
HELIX 6 6 PRO A 119 GLN A 124 1 6
HELIX 7 7 THR A 150 ALA A 159 1 10
HELIX 8 8 MET A 162 SER A 167 1 6
HELIX 9 9 ARG A 168 VAL A 172 5 5
HELIX 10 10 ASN A 189 PHE A 196 1 8
HELIX 11 11 THR A 199 ASN A 211 1 13
HELIX 12 12 SER A 242 LYS A 248 1 7
HELIX 13 13 LEU A 262 VAL A 265 1 4
HELIX 14 14 ALA A 299 LYS A 312 1 14
HELIX 15 15 MET A 313 PHE A 317 5 5
HELIX 16 16 THR A 329 LEU A 357 1 29
HELIX 17 17 ARG A 363 THR A 365 5 3
HELIX 18 18 LEU A 366 GLY A 387 1 22
HELIX 19 19 THR A 392 GLU A 423 1 32
HELIX 20 20 PRO A 427 MET A 435 1 9
HELIX 21 21 MET A 435 PHE A 458 1 24
HELIX 22 22 THR A 463 ALA A 485 1 23
HELIX 23 23 ILE A 487 ALA A 494 1 8
HELIX 24 24 GLY A 514 HIS A 525 1 12
HELIX 25 25 HIS A 525 SER A 537 1 13
HELIX 26 26 THR A 538 ARG A 558 1 21
HELIX 27 27 THR A 583 LYS A 601 1 19
HELIX 28 28 ASP A 633 ARG A 637 5 5
HELIX 29 29 GLY A 639 ASN A 642 5 4
HELIX 30 30 LYS A 643 LYS A 659 1 17
HELIX 31 31 GLY A 691 HIS A 709 1 19
HELIX 32 32 ASP A 732 GLY A 740 1 9
HELIX 33 33 SER A 742 GLY A 755 1 14
HELIX 34 34 GLU A 776 ARG A 780 5 5
HELIX 35 35 LEU A 782 ASP A 788 5 7
HELIX 36 36 PHE A 801 SER A 805 1 5
HELIX 37 37 SER A 836 SER A 849 1 14
HELIX 38 38 GLN A 872 LEU A 881 1 10
HELIX 39 39 ILE A 882 LEU A 888 1 7
HELIX 40 40 SER A 896 LEU A 903 5 8
HELIX 41 41 VAL A 904 ARG A 919 1 16
HELIX 42 42 ASP A 924 LYS A 955 1 32
HELIX 43 43 GLU A 962 ARG A 969 1 8
HELIX 44 44 ARG A 971 VAL A 986 1 16
HELIX 45 45 GLY A 998 THR A 1013 1 16
HELIX 46 46 PHE A 1025 PHE A 1033 1 9
SHEET 1 A 5 VAL A 127 LYS A 131 0
SHEET 2 A 5 ALA A 42 SER A 48 -1 N THR A 44 O GLU A 130
SHEET 3 A 5 THR A 87 PHE A 94 -1 O ILE A 90 N ILE A 45
SHEET 4 A 5 LEU A 75 ASP A 83 -1 N MET A 76 O THR A 93
SHEET 5 A 5 ARG A 815 TYR A 819 -1 O ARG A 818 N SER A 80
SHEET 1 B 4 GLN A 176 LEU A 177 0
SHEET 2 B 4 GLN A 284 LYS A 292 -1 O GLY A 290 N GLN A 176
SHEET 3 B 4 PHE A 136 ASN A 144 -1 N VAL A 142 O SER A 287
SHEET 4 B 4 LEU A 321 VAL A 324 -1 O LYS A 322 N ILE A 143
SHEET 1 C 7 GLN A 176 LEU A 177 0
SHEET 2 C 7 GLN A 284 LYS A 292 -1 O GLY A 290 N GLN A 176
SHEET 3 C 7 ILE A 278 PHE A 281 -1 N ALA A 279 O ALA A 286
SHEET 4 C 7 VAL A 606 PHE A 615 -1 O ASN A 613 N ILE A 278
SHEET 5 C 7 ARG A 620 LEU A 631 -1 O ILE A 626 N VAL A 612
SHEET 6 C 7 VAL A 571 GLN A 577 -1 N VAL A 576 O GLY A 625
SHEET 7 C 7 MET A 662 PHE A 666 -1 O MET A 662 N GLN A 577
SHEET 1 D 4 ALA A 266 GLY A 272 0
SHEET 2 D 4 TYR A 182 MET A 188 -1 N TRP A 187 O LYS A 267
SHEET 3 D 4 ARG A 767 VAL A 773 1 O TYR A 772 N ILE A 186
SHEET 4 D 4 SER A 757 ASP A 764 -1 N PHE A 762 O LYS A 769
SHEET 1 E 2 GLN A 218 LEU A 219 0
SHEET 2 E 2 ALA A 232 SER A 233 -1 O ALA A 232 N LEU A 219
SHEET 1 F 2 LEU A 250 VAL A 253 0
SHEET 2 F 2 ARG A 259 LEU A 261 -1 O VAL A 260 N LYS A 252
SHEET 1 G 4 SER A 715 PRO A 718 0
SHEET 2 G 4 SER A 824 GLN A 830 -1 O LEU A 828 N ARG A 717
SHEET 3 G 4 GLY A 679 ASP A 686 -1 N LEU A 684 O MET A 825
SHEET 4 G 4 VAL A 855 TRP A 859 -1 O GLY A 856 N ILE A 685
SHEET 1 H 2 THR A 724 ILE A 729 0
SHEET 2 H 2 SER A 807 GLY A 812 -1 O GLU A 810 N GLN A 726
SHEET 1 I 2 TYR A 790 ARG A 792 0
SHEET 2 I 2 MET A 798 PRO A 800 -1 O VAL A 799 N VAL A 791
SITE 1 AC1 2 ALA A 385 PHE A 386
CRYST1 144.685 144.685 519.357 90.00 90.00 120.00 H 3 2 18
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.006912 0.003990 0.000000 0.00000
SCALE2 0.000000 0.007981 0.000000 0.00000
SCALE3 0.000000 0.000000 0.001925 0.00000