data_4K7T # _entry.id 4K7T # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4K7T pdb_00004k7t 10.2210/pdb4k7t/pdb RCSB RCSB078999 ? ? WWPDB D_1000078999 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-08-14 2 'Structure model' 1 1 2013-09-18 3 'Structure model' 1 2 2013-10-16 4 'Structure model' 1 3 2024-10-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Derived calculations' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_entry_details 5 4 'Structure model' pdbx_modification_feature 6 4 'Structure model' pdbx_struct_conn_angle 7 4 'Structure model' struct_conn 8 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_entry_details.has_protein_modification' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.value' 17 4 'Structure model' '_struct_conn.conn_type_id' 18 4 'Structure model' '_struct_conn.id' 19 4 'Structure model' '_struct_conn.pdbx_dist_value' 20 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 21 4 'Structure model' '_struct_conn.pdbx_value_order' 22 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 23 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 28 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 29 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 30 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 31 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 34 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 35 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 36 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 4K7T _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-04-17 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Economou, N.J.' 1 'Loll, P.J.' 2 # _citation.id primary _citation.title 'High-resolution crystal structure reveals molecular details of target recognition by bacitracin.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 110 _citation.page_first 14207 _citation.page_last 14212 _citation.year 2013 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23940351 _citation.pdbx_database_id_DOI 10.1073/pnas.1308268110 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Economou, N.J.' 1 ? primary 'Cocklin, S.' 2 ? primary 'Loll, P.J.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'bacitracin A2' 1460.740 1 ? ? ? ? 2 non-polymer syn 'GERANYL DIPHOSPHATE' 314.209 1 ? ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 5 water nat water 18.015 20 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'ICL(DGL)IK(ORD)I(DPN)H(DAS)N' _entity_poly.pdbx_seq_one_letter_code_can ICLEIKXIFHDN _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'GERANYL DIPHOSPHATE' GPP 3 'ZINC ION' ZN 4 'SODIUM ION' NA 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 CYS n 1 3 LEU n 1 4 DGL n 1 5 ILE n 1 6 LYS n 1 7 ORD n 1 8 ILE n 1 9 DPN n 1 10 HIS n 1 11 DAS n 1 12 ASN n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Bacillus subtilis' _entity_src_nat.pdbx_ncbi_taxonomy_id 1423 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DAS 'D-peptide linking' . 'D-ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DGL 'D-peptide linking' . 'D-GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 DPN 'D-peptide linking' . D-PHENYLALANINE ? 'C9 H11 N O2' 165.189 GPP non-polymer . 'GERANYL DIPHOSPHATE' ? 'C10 H20 O7 P2' 314.209 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 ORD 'D-peptide linking' . D-ORNITHINE ? 'C5 H12 N2 O2' 132.161 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 1 1 ILE ILE A . n A 1 2 CYS 2 2 2 CYS CYS A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 DGL 4 4 4 DGL DGL A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 ORD 7 7 7 ORD ORD A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 DPN 9 9 9 DPN DPN A . n A 1 10 HIS 10 10 10 HIS HIS A . n A 1 11 DAS 11 11 11 DAS DAS A . n A 1 12 ASN 12 12 12 ASN ASN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GPP 1 101 101 GPP GPP A . C 3 ZN 1 102 102 ZN ZN A . D 4 NA 1 103 103 NA NA A . E 5 HOH 1 201 201 HOH HOH A . E 5 HOH 2 202 202 HOH HOH A . E 5 HOH 3 203 203 HOH HOH A . E 5 HOH 4 204 204 HOH HOH A . E 5 HOH 5 205 205 HOH HOH A . E 5 HOH 6 206 206 HOH HOH A . E 5 HOH 7 207 207 HOH HOH A . E 5 HOH 8 208 208 HOH HOH A . E 5 HOH 9 209 209 HOH HOH A . E 5 HOH 10 210 210 HOH HOH A . E 5 HOH 11 211 211 HOH HOH A . E 5 HOH 12 212 212 HOH HOH A . E 5 HOH 13 213 213 HOH HOH A . E 5 HOH 14 214 214 HOH HOH A . E 5 HOH 15 215 215 HOH HOH A . E 5 HOH 16 216 216 HOH HOH A . E 5 HOH 17 217 217 HOH HOH A . E 5 HOH 18 218 218 HOH HOH A . E 5 HOH 19 219 219 HOH HOH A . E 5 HOH 20 220 220 HOH HOH A . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 2 PHENIX 1.8.1_1168 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 3 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 ADSC Quantum ? ? ? ? 'data collection' ? ? ? 5 XDS . ? ? ? ? 'data reduction' ? ? ? 6 PHENIX . ? ? ? ? phasing ? ? ? # _cell.entry_id 4K7T _cell.length_a 35.980 _cell.length_b 35.980 _cell.length_c 16.120 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4K7T _symmetry.space_group_name_H-M 'P 62' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 4K7T _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.06 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 40.35 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'microbatch under oil' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.pdbx_details '20% PEG-2000 in 0.1 M sodium acetate pH 6.5, microbatch under oil, temperature 291K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 270' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details 'Si(111)' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X6A' _diffrn_source.pdbx_wavelength_list 0.98 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X6A # _reflns.entry_id 4K7T _reflns.d_resolution_high 1.100 _reflns.number_obs 4983 _reflns.pdbx_Rmerge_I_obs 0.092 _reflns.pdbx_netI_over_sigmaI 16.690 _reflns.percent_possible_obs 99.900 _reflns.B_iso_Wilson_estimate 11.547 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 12.005 _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy 10.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.100 1.160 14446 ? 1423 0.669 4.100 ? ? ? ? ? 99.900 1 1 1.160 1.240 15311 ? 1462 0.415 6.450 ? ? ? ? ? 100.000 2 1 1.240 1.340 14532 ? 1371 0.241 10.200 ? ? ? ? ? 100.000 3 1 1.340 1.470 13672 ? 1275 0.159 14.470 ? ? ? ? ? 100.000 4 1 1.470 1.640 11903 ? 1104 0.109 19.710 ? ? ? ? ? 100.000 5 1 1.640 1.890 10654 ? 990 0.077 25.020 ? ? ? ? ? 100.000 6 1 1.890 2.310 9062 ? 853 0.062 32.070 ? ? ? ? ? 100.000 7 1 2.310 3.240 6783 ? 647 0.056 35.070 ? ? ? ? ? 99.800 8 1 3.240 20.000 3738 ? 363 0.061 38.780 ? ? ? ? ? 99.500 9 1 # _refine.entry_id 4K7T _refine.ls_d_res_high 1.1000 _refine.ls_d_res_low 12.0050 _refine.pdbx_ls_sigma_F 1.220 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.9100 _refine.ls_number_reflns_obs 4983 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details random _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1284 _refine.ls_R_factor_R_work 0.1271 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1493 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.6200 _refine.ls_number_reflns_R_free 438 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 12.6637 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.0800 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8966 _refine.B_iso_max 30.950 _refine.B_iso_min 5.780 _refine.pdbx_overall_phase_error 17.1100 _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 100 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 21 _refine_hist.number_atoms_solvent 20 _refine_hist.number_atoms_total 141 _refine_hist.d_res_high 1.1000 _refine_hist.d_res_low 12.0050 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 121 0.008 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 164 2.051 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 16 0.120 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 19 0.005 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 39 15.381 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 1.1000 1.2590 3 100.0000 3044 . 0.1376 0.1633 . 116 . 3160 . . 'X-RAY DIFFRACTION' 1.2590 1.5856 3 100.0000 2991 . 0.1128 0.1339 . 171 . 3162 . . 'X-RAY DIFFRACTION' 1.5856 12.0061 3 100.0000 3007 . 0.1304 0.1545 . 151 . 3158 . . 'X-RAY DIFFRACTION' # _struct.entry_id 4K7T _struct.title 'Structure of the ternary complex of bacitracin, zinc, and geranyl-pyrophosphate' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4K7T _struct_keywords.text 'antibiotic, bacitracin, cell-wall biosynthesis inhibitor, undecaprenyl-pyrophosphate' _struct_keywords.pdbx_keywords ANTIBIOTIC # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_ref.id 1 _struct_ref.db_name NOR _struct_ref.db_code NOR00018 _struct_ref.pdbx_db_accession NOR00018 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ICLEIKXIFHDN _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4K7T _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 12 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession NOR00018 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 12 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A ILE 1 C ? ? ? 1_555 A CYS 2 SG ? ? A ILE 1 A CYS 2 1_555 ? ? ? ? ? ? ? 1.753 sing ? covale2 covale both ? A ILE 1 C ? ? ? 1_555 A CYS 2 N ? ? A ILE 1 A CYS 2 1_555 ? ? ? ? ? ? ? 1.299 ? ? covale3 covale both ? A LEU 3 C ? ? ? 1_555 A DGL 4 N ? ? A LEU 3 A DGL 4 1_555 ? ? ? ? ? ? ? 1.334 sing ? covale4 covale both ? A DGL 4 C ? ? ? 1_555 A ILE 5 N ? ? A DGL 4 A ILE 5 1_555 ? ? ? ? ? ? ? 1.329 sing ? covale5 covale both ? A LYS 6 C ? ? ? 1_555 A ORD 7 N ? ? A LYS 6 A ORD 7 1_555 ? ? ? ? ? ? ? 1.326 sing ? covale6 covale one ? A LYS 6 NZ ? ? ? 1_555 A ASN 12 C ? ? A LYS 6 A ASN 12 1_555 ? ? ? ? ? ? ? 1.353 sing ? covale7 covale both ? A ORD 7 C ? ? ? 1_555 A ILE 8 N ? ? A ORD 7 A ILE 8 1_555 ? ? ? ? ? ? ? 1.328 sing ? covale8 covale both ? A ILE 8 C ? ? ? 1_555 A DPN 9 N ? ? A ILE 8 A DPN 9 1_555 ? ? ? ? ? ? ? 1.333 sing ? covale9 covale both ? A DPN 9 C ? ? ? 1_555 A HIS 10 N ? ? A DPN 9 A HIS 10 1_555 ? ? ? ? ? ? ? 1.323 sing ? covale10 covale both ? A HIS 10 C ? ? ? 1_555 A DAS 11 N ? ? A HIS 10 A DAS 11 1_555 ? ? ? ? ? ? ? 1.331 sing ? covale11 covale both ? A DAS 11 C ? ? ? 1_555 A ASN 12 N ? ? A DAS 11 A ASN 12 1_555 ? ? ? ? ? ? ? 1.327 sing ? metalc1 metalc ? ? A ILE 1 N ? ? ? 1_555 C ZN . ZN ? ? A ILE 1 A ZN 102 1_555 ? ? ? ? ? ? ? 2.139 ? ? metalc2 metalc ? ? A CYS 2 N ? ? ? 1_555 C ZN . ZN ? ? A CYS 2 A ZN 102 1_555 ? ? ? ? ? ? ? 2.178 ? ? metalc3 metalc ? ? A DGL 4 OE1 ? ? ? 1_555 C ZN . ZN ? ? A DGL 4 A ZN 102 1_555 ? ? ? ? ? ? ? 2.100 ? ? metalc4 metalc ? ? A ILE 5 O ? ? ? 1_555 D NA . NA ? ? A ILE 5 A NA 103 1_555 ? ? ? ? ? ? ? 2.299 ? ? metalc5 metalc ? ? A ILE 8 O ? ? ? 1_555 D NA . NA ? ? A ILE 8 A NA 103 1_555 ? ? ? ? ? ? ? 2.227 ? ? metalc6 metalc ? ? A DAS 11 OD2 ? ? ? 1_555 D NA . NA ? ? A DAS 11 A NA 103 1_555 ? ? ? ? ? ? ? 2.392 ? ? metalc7 metalc ? ? B GPP . O1B ? ? ? 1_555 C ZN . ZN ? ? A GPP 101 A ZN 102 1_555 ? ? ? ? ? ? ? 2.014 ? ? metalc8 metalc ? ? B GPP . O1A ? ? ? 1_555 C ZN . ZN ? ? A GPP 101 A ZN 102 1_555 ? ? ? ? ? ? ? 2.081 ? ? metalc9 metalc ? ? B GPP . O2B ? ? ? 1_555 D NA . NA ? ? A GPP 101 A NA 103 1_555 ? ? ? ? ? ? ? 2.363 ? ? metalc10 metalc ? ? B GPP . O2A ? ? ? 1_555 D NA . NA ? ? A GPP 101 A NA 103 1_555 ? ? ? ? ? ? ? 2.420 ? ? metalc11 metalc ? ? B GPP . O3A ? ? ? 1_555 D NA . NA ? ? A GPP 101 A NA 103 1_555 ? ? ? ? ? ? ? 3.100 ? ? metalc12 metalc ? ? C ZN . ZN ? ? ? 1_555 E HOH . O ? ? A ZN 102 A HOH 201 1_555 ? ? ? ? ? ? ? 2.120 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N ? A ILE 1 ? A ILE 1 ? 1_555 ZN ? C ZN . ? A ZN 102 ? 1_555 N ? A CYS 2 ? A CYS 2 ? 1_555 76.9 ? 2 N ? A ILE 1 ? A ILE 1 ? 1_555 ZN ? C ZN . ? A ZN 102 ? 1_555 OE1 ? A DGL 4 ? A DGL 4 ? 1_555 164.4 ? 3 N ? A CYS 2 ? A CYS 2 ? 1_555 ZN ? C ZN . ? A ZN 102 ? 1_555 OE1 ? A DGL 4 ? A DGL 4 ? 1_555 89.6 ? 4 N ? A ILE 1 ? A ILE 1 ? 1_555 ZN ? C ZN . ? A ZN 102 ? 1_555 O1B ? B GPP . ? A GPP 101 ? 1_555 98.0 ? 5 N ? A CYS 2 ? A CYS 2 ? 1_555 ZN ? C ZN . ? A ZN 102 ? 1_555 O1B ? B GPP . ? A GPP 101 ? 1_555 172.4 ? 6 OE1 ? A DGL 4 ? A DGL 4 ? 1_555 ZN ? C ZN . ? A ZN 102 ? 1_555 O1B ? B GPP . ? A GPP 101 ? 1_555 96.2 ? 7 N ? A ILE 1 ? A ILE 1 ? 1_555 ZN ? C ZN . ? A ZN 102 ? 1_555 O1A ? B GPP . ? A GPP 101 ? 1_555 88.8 ? 8 N ? A CYS 2 ? A CYS 2 ? 1_555 ZN ? C ZN . ? A ZN 102 ? 1_555 O1A ? B GPP . ? A GPP 101 ? 1_555 90.2 ? 9 OE1 ? A DGL 4 ? A DGL 4 ? 1_555 ZN ? C ZN . ? A ZN 102 ? 1_555 O1A ? B GPP . ? A GPP 101 ? 1_555 83.5 ? 10 O1B ? B GPP . ? A GPP 101 ? 1_555 ZN ? C ZN . ? A ZN 102 ? 1_555 O1A ? B GPP . ? A GPP 101 ? 1_555 95.3 ? 11 N ? A ILE 1 ? A ILE 1 ? 1_555 ZN ? C ZN . ? A ZN 102 ? 1_555 O ? E HOH . ? A HOH 201 ? 1_555 94.8 ? 12 N ? A CYS 2 ? A CYS 2 ? 1_555 ZN ? C ZN . ? A ZN 102 ? 1_555 O ? E HOH . ? A HOH 201 ? 1_555 84.3 ? 13 OE1 ? A DGL 4 ? A DGL 4 ? 1_555 ZN ? C ZN . ? A ZN 102 ? 1_555 O ? E HOH . ? A HOH 201 ? 1_555 91.4 ? 14 O1B ? B GPP . ? A GPP 101 ? 1_555 ZN ? C ZN . ? A ZN 102 ? 1_555 O ? E HOH . ? A HOH 201 ? 1_555 90.7 ? 15 O1A ? B GPP . ? A GPP 101 ? 1_555 ZN ? C ZN . ? A ZN 102 ? 1_555 O ? E HOH . ? A HOH 201 ? 1_555 172.5 ? 16 O ? A ILE 5 ? A ILE 5 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O ? A ILE 8 ? A ILE 8 ? 1_555 93.5 ? 17 O ? A ILE 5 ? A ILE 5 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 OD2 ? A DAS 11 ? A DAS 11 ? 1_555 97.8 ? 18 O ? A ILE 8 ? A ILE 8 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 OD2 ? A DAS 11 ? A DAS 11 ? 1_555 98.9 ? 19 O ? A ILE 5 ? A ILE 5 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O2B ? B GPP . ? A GPP 101 ? 1_555 163.0 ? 20 O ? A ILE 8 ? A ILE 8 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O2B ? B GPP . ? A GPP 101 ? 1_555 103.5 ? 21 OD2 ? A DAS 11 ? A DAS 11 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O2B ? B GPP . ? A GPP 101 ? 1_555 80.8 ? 22 O ? A ILE 5 ? A ILE 5 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O2A ? B GPP . ? A GPP 101 ? 1_555 81.2 ? 23 O ? A ILE 8 ? A ILE 8 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O2A ? B GPP . ? A GPP 101 ? 1_555 112.7 ? 24 OD2 ? A DAS 11 ? A DAS 11 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O2A ? B GPP . ? A GPP 101 ? 1_555 148.4 ? 25 O2B ? B GPP . ? A GPP 101 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O2A ? B GPP . ? A GPP 101 ? 1_555 91.1 ? 26 O ? A ILE 5 ? A ILE 5 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O3A ? B GPP . ? A GPP 101 ? 1_555 128.6 ? 27 O ? A ILE 8 ? A ILE 8 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O3A ? B GPP . ? A GPP 101 ? 1_555 86.3 ? 28 OD2 ? A DAS 11 ? A DAS 11 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O3A ? B GPP . ? A GPP 101 ? 1_555 133.1 ? 29 O2B ? B GPP . ? A GPP 101 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O3A ? B GPP . ? A GPP 101 ? 1_555 52.9 ? 30 O2A ? B GPP . ? A GPP 101 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 O3A ? B GPP . ? A GPP 101 ? 1_555 52.5 ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 ORD A 7 ? . . . . ORD A 7 ? 1_555 . . . . . . . ? 1 ORD Ornithine 'Named protein modification' 2 LYS A 6 ? ASN A 12 ? LYS A 6 ? 1_555 ASN A 12 ? 1_555 NZ C . . . None 'Isopeptide bond' 3 ILE A 1 ? CYS A 2 ? ILE A 1 ? 1_555 CYS A 2 ? 1_555 C SG . . . None 'Non-standard linkage' # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GPP 101 ? 15 'BINDING SITE FOR RESIDUE GPP A 101' AC2 Software A ZN 102 ? 6 'BINDING SITE FOR RESIDUE ZN A 102' AC3 Software A NA 103 ? 5 'BINDING SITE FOR RESIDUE NA A 103' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 15 ILE A 1 ? ILE A 1 . ? 1_555 ? 2 AC1 15 CYS A 2 ? CYS A 2 . ? 1_555 ? 3 AC1 15 LEU A 3 ? LEU A 3 . ? 6_554 ? 4 AC1 15 LEU A 3 ? LEU A 3 . ? 1_555 ? 5 AC1 15 DGL A 4 ? DGL A 4 . ? 1_555 ? 6 AC1 15 ILE A 5 ? ILE A 5 . ? 1_555 ? 7 AC1 15 ILE A 8 ? ILE A 8 . ? 1_555 ? 8 AC1 15 DPN A 9 ? DPN A 9 . ? 1_555 ? 9 AC1 15 HIS A 10 ? HIS A 10 . ? 1_555 ? 10 AC1 15 DAS A 11 ? DAS A 11 . ? 1_555 ? 11 AC1 15 ASN A 12 ? ASN A 12 . ? 1_555 ? 12 AC1 15 ZN C . ? ZN A 102 . ? 1_555 ? 13 AC1 15 NA D . ? NA A 103 . ? 1_555 ? 14 AC1 15 HOH E . ? HOH A 201 . ? 1_555 ? 15 AC1 15 HOH E . ? HOH A 206 . ? 1_555 ? 16 AC2 6 ILE A 1 ? ILE A 1 . ? 1_555 ? 17 AC2 6 CYS A 2 ? CYS A 2 . ? 1_555 ? 18 AC2 6 LEU A 3 ? LEU A 3 . ? 1_555 ? 19 AC2 6 DGL A 4 ? DGL A 4 . ? 1_555 ? 20 AC2 6 GPP B . ? GPP A 101 . ? 1_555 ? 21 AC2 6 HOH E . ? HOH A 201 . ? 1_555 ? 22 AC3 5 ILE A 5 ? ILE A 5 . ? 1_555 ? 23 AC3 5 LYS A 6 ? LYS A 6 . ? 1_555 ? 24 AC3 5 ILE A 8 ? ILE A 8 . ? 1_555 ? 25 AC3 5 DAS A 11 ? DAS A 11 . ? 1_555 ? 26 AC3 5 GPP B . ? GPP A 101 . ? 1_555 ? # _pdbx_entry_details.entry_id 4K7T _pdbx_entry_details.compound_details 'ILE-1 AND CYS-2 HAVE UNDERGONE A CONDENSATION REACTION TO PRODUCE A THIAZOLINE RING' _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 217 ? ? 1_555 O A HOH 219 ? ? 6_555 1.88 2 1 O A HOH 217 ? ? 1_555 O A HOH 217 ? ? 4_565 2.09 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id CYS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 2 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 124.18 _pdbx_validate_torsion.psi 6.76 # _pdbx_molecule_features.prd_id PRD_001070 _pdbx_molecule_features.name 'Bacitracin A1' _pdbx_molecule_features.type 'Cyclic peptide' _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_001070 _pdbx_molecule.asym_id A # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 1.290 _diffrn_reflns.pdbx_d_res_low ? _diffrn_reflns.pdbx_number_obs 5949 _diffrn_reflns.pdbx_Rmerge_I_obs 0.086 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared ? _diffrn_reflns.av_sigmaI_over_netI ? _diffrn_reflns.pdbx_redundancy ? _diffrn_reflns.pdbx_percent_possible_obs 99.60 _diffrn_reflns.number 115240 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 1.29 1.32 440 ? 0.642 ? ? ? 95.90 1 1.32 1.36 430 ? 0.511 ? ? ? 99.80 1 1.36 1.39 395 ? 0.367 ? ? ? 100.00 1 1.39 1.44 425 ? 0.315 ? ? ? 100.00 1 1.44 1.48 389 ? 0.223 ? ? ? 100.00 1 1.48 1.54 361 ? 0.183 ? ? ? 100.00 1 1.54 1.59 391 ? 0.147 ? ? ? 100.00 1 1.59 1.66 332 ? 0.122 ? ? ? 100.00 1 1.66 1.73 353 ? 0.093 ? ? ? 100.00 1 1.73 1.82 317 ? 0.089 ? ? ? 100.00 1 1.82 1.92 303 ? 0.086 ? ? ? 100.00 1 1.92 2.03 300 ? 0.069 ? ? ? 100.00 1 2.03 2.17 277 ? 0.070 ? ? ? 100.00 1 2.17 2.35 258 ? 0.066 ? ? ? 100.00 1 2.35 2.57 236 ? 0.067 ? ? ? 100.00 1 2.57 2.87 205 ? 0.062 ? ? ? 99.50 1 2.87 3.32 192 ? 0.059 ? ? ? 100.00 1 3.32 4.07 161 ? 0.055 ? ? ? 100.00 1 4.07 5.75 121 ? 0.062 ? ? ? 100.00 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASN N N N N 1 ASN CA C N S 2 ASN C C N N 3 ASN O O N N 4 ASN CB C N N 5 ASN CG C N N 6 ASN OD1 O N N 7 ASN ND2 N N N 8 ASN OXT O N N 9 ASN H H N N 10 ASN H2 H N N 11 ASN HA H N N 12 ASN HB2 H N N 13 ASN HB3 H N N 14 ASN HD21 H N N 15 ASN HD22 H N N 16 ASN HXT H N N 17 CYS N N N N 18 CYS CA C N R 19 CYS C C N N 20 CYS O O N N 21 CYS CB C N N 22 CYS SG S N N 23 CYS OXT O N N 24 CYS H H N N 25 CYS H2 H N N 26 CYS HA H N N 27 CYS HB2 H N N 28 CYS HB3 H N N 29 CYS HG H N N 30 CYS HXT H N N 31 DAS N N N N 32 DAS CA C N R 33 DAS C C N N 34 DAS O O N N 35 DAS CB C N N 36 DAS CG C N N 37 DAS OD1 O N N 38 DAS OD2 O N N 39 DAS OXT O N N 40 DAS H H N N 41 DAS H2 H N N 42 DAS HA H N N 43 DAS HB2 H N N 44 DAS HB3 H N N 45 DAS HD2 H N N 46 DAS HXT H N N 47 DGL N N N N 48 DGL CA C N R 49 DGL C C N N 50 DGL O O N N 51 DGL CB C N N 52 DGL CG C N N 53 DGL CD C N N 54 DGL OE1 O N N 55 DGL OE2 O N N 56 DGL OXT O N N 57 DGL H H N N 58 DGL H2 H N N 59 DGL HA H N N 60 DGL HB2 H N N 61 DGL HB3 H N N 62 DGL HG2 H N N 63 DGL HG3 H N N 64 DGL HE2 H N N 65 DGL HXT H N N 66 DPN N N N N 67 DPN CA C N R 68 DPN C C N N 69 DPN O O N N 70 DPN OXT O N N 71 DPN CB C N N 72 DPN CG C Y N 73 DPN CD1 C Y N 74 DPN CD2 C Y N 75 DPN CE1 C Y N 76 DPN CE2 C Y N 77 DPN CZ C Y N 78 DPN H H N N 79 DPN H2 H N N 80 DPN HA H N N 81 DPN HXT H N N 82 DPN HB2 H N N 83 DPN HB3 H N N 84 DPN HD1 H N N 85 DPN HD2 H N N 86 DPN HE1 H N N 87 DPN HE2 H N N 88 DPN HZ H N N 89 GPP C1 C N N 90 GPP O1 O N N 91 GPP C2 C N N 92 GPP C3 C N N 93 GPP C4 C N N 94 GPP C5 C N N 95 GPP C6 C N N 96 GPP C7 C N N 97 GPP C8 C N N 98 GPP C9 C N N 99 GPP C10 C N N 100 GPP PA P N R 101 GPP O1A O N N 102 GPP O2A O N N 103 GPP O3A O N N 104 GPP PB P N N 105 GPP O1B O N N 106 GPP O2B O N N 107 GPP O3B O N N 108 GPP H11 H N N 109 GPP H12 H N N 110 GPP H2 H N N 111 GPP H41 H N N 112 GPP H42 H N N 113 GPP H43 H N N 114 GPP H51 H N N 115 GPP H52 H N N 116 GPP H61 H N N 117 GPP H62 H N N 118 GPP H7 H N N 119 GPP H91 H N N 120 GPP H92 H N N 121 GPP H93 H N N 122 GPP H101 H N N 123 GPP H102 H N N 124 GPP H103 H N N 125 GPP HOA2 H N N 126 GPP HOB2 H N N 127 GPP HOB3 H N N 128 HIS N N N N 129 HIS CA C N S 130 HIS C C N N 131 HIS O O N N 132 HIS CB C N N 133 HIS CG C Y N 134 HIS ND1 N Y N 135 HIS CD2 C Y N 136 HIS CE1 C Y N 137 HIS NE2 N Y N 138 HIS OXT O N N 139 HIS H H N N 140 HIS H2 H N N 141 HIS HA H N N 142 HIS HB2 H N N 143 HIS HB3 H N N 144 HIS HD1 H N N 145 HIS HD2 H N N 146 HIS HE1 H N N 147 HIS HE2 H N N 148 HIS HXT H N N 149 HOH O O N N 150 HOH H1 H N N 151 HOH H2 H N N 152 ILE N N N N 153 ILE CA C N S 154 ILE C C N N 155 ILE O O N N 156 ILE CB C N S 157 ILE CG1 C N N 158 ILE CG2 C N N 159 ILE CD1 C N N 160 ILE OXT O N N 161 ILE H H N N 162 ILE H2 H N N 163 ILE HA H N N 164 ILE HB H N N 165 ILE HG12 H N N 166 ILE HG13 H N N 167 ILE HG21 H N N 168 ILE HG22 H N N 169 ILE HG23 H N N 170 ILE HD11 H N N 171 ILE HD12 H N N 172 ILE HD13 H N N 173 ILE HXT H N N 174 LEU N N N N 175 LEU CA C N S 176 LEU C C N N 177 LEU O O N N 178 LEU CB C N N 179 LEU CG C N N 180 LEU CD1 C N N 181 LEU CD2 C N N 182 LEU OXT O N N 183 LEU H H N N 184 LEU H2 H N N 185 LEU HA H N N 186 LEU HB2 H N N 187 LEU HB3 H N N 188 LEU HG H N N 189 LEU HD11 H N N 190 LEU HD12 H N N 191 LEU HD13 H N N 192 LEU HD21 H N N 193 LEU HD22 H N N 194 LEU HD23 H N N 195 LEU HXT H N N 196 LYS N N N N 197 LYS CA C N S 198 LYS C C N N 199 LYS O O N N 200 LYS CB C N N 201 LYS CG C N N 202 LYS CD C N N 203 LYS CE C N N 204 LYS NZ N N N 205 LYS OXT O N N 206 LYS H H N N 207 LYS H2 H N N 208 LYS HA H N N 209 LYS HB2 H N N 210 LYS HB3 H N N 211 LYS HG2 H N N 212 LYS HG3 H N N 213 LYS HD2 H N N 214 LYS HD3 H N N 215 LYS HE2 H N N 216 LYS HE3 H N N 217 LYS HZ1 H N N 218 LYS HZ2 H N N 219 LYS HZ3 H N N 220 LYS HXT H N N 221 NA NA NA N N 222 ORD N N N N 223 ORD CA C N R 224 ORD CB C N N 225 ORD CG C N N 226 ORD CD C N N 227 ORD NE N N N 228 ORD O O N N 229 ORD OXT O N N 230 ORD C C N N 231 ORD H H N N 232 ORD H2 H N N 233 ORD HA H N N 234 ORD HB2 H N N 235 ORD HB3 H N N 236 ORD HG2 H N N 237 ORD HG3 H N N 238 ORD HD2 H N N 239 ORD HD3 H N N 240 ORD HE1 H N N 241 ORD HE2 H N N 242 ORD HXT H N N 243 ZN ZN ZN N N 244 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASN N CA sing N N 1 ASN N H sing N N 2 ASN N H2 sing N N 3 ASN CA C sing N N 4 ASN CA CB sing N N 5 ASN CA HA sing N N 6 ASN C O doub N N 7 ASN C OXT sing N N 8 ASN CB CG sing N N 9 ASN CB HB2 sing N N 10 ASN CB HB3 sing N N 11 ASN CG OD1 doub N N 12 ASN CG ND2 sing N N 13 ASN ND2 HD21 sing N N 14 ASN ND2 HD22 sing N N 15 ASN OXT HXT sing N N 16 CYS N CA sing N N 17 CYS N H sing N N 18 CYS N H2 sing N N 19 CYS CA C sing N N 20 CYS CA CB sing N N 21 CYS CA HA sing N N 22 CYS C O doub N N 23 CYS C OXT sing N N 24 CYS CB SG sing N N 25 CYS CB HB2 sing N N 26 CYS CB HB3 sing N N 27 CYS SG HG sing N N 28 CYS OXT HXT sing N N 29 DAS N CA sing N N 30 DAS N H sing N N 31 DAS N H2 sing N N 32 DAS CA C sing N N 33 DAS CA CB sing N N 34 DAS CA HA sing N N 35 DAS C O doub N N 36 DAS C OXT sing N N 37 DAS CB CG sing N N 38 DAS CB HB2 sing N N 39 DAS CB HB3 sing N N 40 DAS CG OD1 doub N N 41 DAS CG OD2 sing N N 42 DAS OD2 HD2 sing N N 43 DAS OXT HXT sing N N 44 DGL N CA sing N N 45 DGL N H sing N N 46 DGL N H2 sing N N 47 DGL CA C sing N N 48 DGL CA CB sing N N 49 DGL CA HA sing N N 50 DGL C O doub N N 51 DGL C OXT sing N N 52 DGL CB CG sing N N 53 DGL CB HB2 sing N N 54 DGL CB HB3 sing N N 55 DGL CG CD sing N N 56 DGL CG HG2 sing N N 57 DGL CG HG3 sing N N 58 DGL CD OE1 doub N N 59 DGL CD OE2 sing N N 60 DGL OE2 HE2 sing N N 61 DGL OXT HXT sing N N 62 DPN N CA sing N N 63 DPN N H sing N N 64 DPN N H2 sing N N 65 DPN CA C sing N N 66 DPN CA CB sing N N 67 DPN CA HA sing N N 68 DPN C O doub N N 69 DPN C OXT sing N N 70 DPN OXT HXT sing N N 71 DPN CB CG sing N N 72 DPN CB HB2 sing N N 73 DPN CB HB3 sing N N 74 DPN CG CD1 doub Y N 75 DPN CG CD2 sing Y N 76 DPN CD1 CE1 sing Y N 77 DPN CD1 HD1 sing N N 78 DPN CD2 CE2 doub Y N 79 DPN CD2 HD2 sing N N 80 DPN CE1 CZ doub Y N 81 DPN CE1 HE1 sing N N 82 DPN CE2 CZ sing Y N 83 DPN CE2 HE2 sing N N 84 DPN CZ HZ sing N N 85 GPP C1 O1 sing N N 86 GPP C1 C2 sing N N 87 GPP C1 H11 sing N N 88 GPP C1 H12 sing N N 89 GPP O1 PA sing N N 90 GPP C2 C3 doub N E 91 GPP C2 H2 sing N N 92 GPP C3 C4 sing N N 93 GPP C3 C5 sing N N 94 GPP C4 H41 sing N N 95 GPP C4 H42 sing N N 96 GPP C4 H43 sing N N 97 GPP C5 C6 sing N N 98 GPP C5 H51 sing N N 99 GPP C5 H52 sing N N 100 GPP C6 C7 sing N N 101 GPP C6 H61 sing N N 102 GPP C6 H62 sing N N 103 GPP C7 C8 doub N N 104 GPP C7 H7 sing N N 105 GPP C8 C9 sing N N 106 GPP C8 C10 sing N N 107 GPP C9 H91 sing N N 108 GPP C9 H92 sing N N 109 GPP C9 H93 sing N N 110 GPP C10 H101 sing N N 111 GPP C10 H102 sing N N 112 GPP C10 H103 sing N N 113 GPP PA O1A doub N N 114 GPP PA O2A sing N N 115 GPP PA O3A sing N N 116 GPP O2A HOA2 sing N N 117 GPP O3A PB sing N N 118 GPP PB O1B doub N N 119 GPP PB O2B sing N N 120 GPP PB O3B sing N N 121 GPP O2B HOB2 sing N N 122 GPP O3B HOB3 sing N N 123 HIS N CA sing N N 124 HIS N H sing N N 125 HIS N H2 sing N N 126 HIS CA C sing N N 127 HIS CA CB sing N N 128 HIS CA HA sing N N 129 HIS C O doub N N 130 HIS C OXT sing N N 131 HIS CB CG sing N N 132 HIS CB HB2 sing N N 133 HIS CB HB3 sing N N 134 HIS CG ND1 sing Y N 135 HIS CG CD2 doub Y N 136 HIS ND1 CE1 doub Y N 137 HIS ND1 HD1 sing N N 138 HIS CD2 NE2 sing Y N 139 HIS CD2 HD2 sing N N 140 HIS CE1 NE2 sing Y N 141 HIS CE1 HE1 sing N N 142 HIS NE2 HE2 sing N N 143 HIS OXT HXT sing N N 144 HOH O H1 sing N N 145 HOH O H2 sing N N 146 ILE N CA sing N N 147 ILE N H sing N N 148 ILE N H2 sing N N 149 ILE CA C sing N N 150 ILE CA CB sing N N 151 ILE CA HA sing N N 152 ILE C O doub N N 153 ILE C OXT sing N N 154 ILE CB CG1 sing N N 155 ILE CB CG2 sing N N 156 ILE CB HB sing N N 157 ILE CG1 CD1 sing N N 158 ILE CG1 HG12 sing N N 159 ILE CG1 HG13 sing N N 160 ILE CG2 HG21 sing N N 161 ILE CG2 HG22 sing N N 162 ILE CG2 HG23 sing N N 163 ILE CD1 HD11 sing N N 164 ILE CD1 HD12 sing N N 165 ILE CD1 HD13 sing N N 166 ILE OXT HXT sing N N 167 LEU N CA sing N N 168 LEU N H sing N N 169 LEU N H2 sing N N 170 LEU CA C sing N N 171 LEU CA CB sing N N 172 LEU CA HA sing N N 173 LEU C O doub N N 174 LEU C OXT sing N N 175 LEU CB CG sing N N 176 LEU CB HB2 sing N N 177 LEU CB HB3 sing N N 178 LEU CG CD1 sing N N 179 LEU CG CD2 sing N N 180 LEU CG HG sing N N 181 LEU CD1 HD11 sing N N 182 LEU CD1 HD12 sing N N 183 LEU CD1 HD13 sing N N 184 LEU CD2 HD21 sing N N 185 LEU CD2 HD22 sing N N 186 LEU CD2 HD23 sing N N 187 LEU OXT HXT sing N N 188 LYS N CA sing N N 189 LYS N H sing N N 190 LYS N H2 sing N N 191 LYS CA C sing N N 192 LYS CA CB sing N N 193 LYS CA HA sing N N 194 LYS C O doub N N 195 LYS C OXT sing N N 196 LYS CB CG sing N N 197 LYS CB HB2 sing N N 198 LYS CB HB3 sing N N 199 LYS CG CD sing N N 200 LYS CG HG2 sing N N 201 LYS CG HG3 sing N N 202 LYS CD CE sing N N 203 LYS CD HD2 sing N N 204 LYS CD HD3 sing N N 205 LYS CE NZ sing N N 206 LYS CE HE2 sing N N 207 LYS CE HE3 sing N N 208 LYS NZ HZ1 sing N N 209 LYS NZ HZ2 sing N N 210 LYS NZ HZ3 sing N N 211 LYS OXT HXT sing N N 212 ORD N CA sing N N 213 ORD CA CB sing N N 214 ORD CA C sing N N 215 ORD CB CG sing N N 216 ORD CG CD sing N N 217 ORD CD NE sing N N 218 ORD C O doub N N 219 ORD C OXT sing N N 220 ORD N H sing N N 221 ORD N H2 sing N N 222 ORD CA HA sing N N 223 ORD CB HB2 sing N N 224 ORD CB HB3 sing N N 225 ORD CG HG2 sing N N 226 ORD CG HG3 sing N N 227 ORD CD HD2 sing N N 228 ORD CD HD3 sing N N 229 ORD NE HE1 sing N N 230 ORD NE HE2 sing N N 231 ORD OXT HXT sing N N 232 # _atom_sites.entry_id 4K7T _atom_sites.fract_transf_matrix[1][1] 0.027793 _atom_sites.fract_transf_matrix[1][2] 0.016046 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.032093 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.062035 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N NA O P S ZN # loop_