HEADER LYASE 17-APR-13 4K7X TITLE CRYSTAL STRUCTURE OF A 4-HYDROXYPROLINE EPIMERASE FROM BURKHOLDERIA TITLE 2 MULTIVORANS, TARGET EFI-506479, WITH BOUND PHOSPHATE, CLOSED DOMAINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLINE RACEMASE; COMPND 3 CHAIN: A; COMPND 4 EC: 5.1.1.4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA MULTIVORANS; SOURCE 3 ORGANISM_TAXID: 395019; SOURCE 4 STRAIN: ATCC 17616; SOURCE 5 GENE: PRDF, BMULJ_04062; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS PROLINE RACEMASE FAMILY, PROPOSED 4-OH PROLINE EPIMERASE, ENZYME KEYWDS 2 FUNCTION INITIATIVE, EFI, STRUCTURAL GENOMICS, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,R.TORO,R.BHOSLE,N.F.AL OBAIDI,L.L.MORISCO,S.R.WASSERMAN, AUTHOR 2 S.SOJITRA,M.STEAD,E.WASHINGTON,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS, AUTHOR 3 J.HAMMONDS,B.HILLERICH,J.LOVE,R.D.SEIDEL,H.J.IMKER,J.A.GERLT, AUTHOR 4 S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) REVDAT 2 20-SEP-23 4K7X 1 REMARK SEQADV LINK REVDAT 1 01-MAY-13 4K7X 0 JRNL AUTH M.W.VETTING,R.TORO,R.BHOSLE,N.F.AL OBAIDI,L.L.MORISCO, JRNL AUTH 2 S.R.WASSERMAN,S.SOJITRA,M.STEAD,E.WASHINGTON,A.SCOTT GLENN, JRNL AUTH 3 S.CHOWDHURY,B.EVANS,J.HAMMONDS,B.HILLERICH,J.LOVE, JRNL AUTH 4 R.D.SEIDEL,H.J.IMKER,J.A.GERLT,S.C.ALMO, JRNL AUTH 5 ENZYME FUNCTION INITIATIVE (EFI) JRNL TITL CRYSTAL STRUCTURE OF A 4-HYDROXYPROLINE EPIMERASE FROM JRNL TITL 2 BURKHOLDERIA MULTIVORANS, TARGET EFI-506479, WITH BOUND JRNL TITL 3 PHOSPHATE, CLOSED DOMAINS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 58574 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.156 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2964 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.7824 - 4.8209 1.00 2863 134 0.1874 0.2135 REMARK 3 2 4.8209 - 3.8293 1.00 2725 143 0.1216 0.1368 REMARK 3 3 3.8293 - 3.3461 1.00 2688 152 0.1274 0.1383 REMARK 3 4 3.3461 - 3.0405 1.00 2655 162 0.1308 0.1490 REMARK 3 5 3.0405 - 2.8228 1.00 2652 149 0.1338 0.1542 REMARK 3 6 2.8228 - 2.6565 1.00 2670 122 0.1295 0.1494 REMARK 3 7 2.6565 - 2.5236 1.00 2647 133 0.1250 0.1417 REMARK 3 8 2.5236 - 2.4138 1.00 2654 141 0.1163 0.1552 REMARK 3 9 2.4138 - 2.3209 1.00 2646 141 0.1207 0.1536 REMARK 3 10 2.3209 - 2.2408 1.00 2626 152 0.1175 0.1436 REMARK 3 11 2.2408 - 2.1708 1.00 2605 145 0.1173 0.1394 REMARK 3 12 2.1708 - 2.1087 1.00 2639 144 0.1222 0.1299 REMARK 3 13 2.1087 - 2.0533 1.00 2588 140 0.1245 0.1660 REMARK 3 14 2.0533 - 2.0032 1.00 2666 140 0.1319 0.1624 REMARK 3 15 2.0032 - 1.9576 1.00 2617 138 0.1439 0.1548 REMARK 3 16 1.9576 - 1.9160 1.00 2606 138 0.1451 0.1557 REMARK 3 17 1.9160 - 1.8777 1.00 2620 137 0.1506 0.1611 REMARK 3 18 1.8777 - 1.8422 1.00 2621 157 0.1595 0.1797 REMARK 3 19 1.8422 - 1.8093 1.00 2601 132 0.1644 0.2159 REMARK 3 20 1.8093 - 1.7787 1.00 2618 143 0.1775 0.1935 REMARK 3 21 1.7787 - 1.7500 1.00 2603 121 0.1972 0.1854 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2491 REMARK 3 ANGLE : 1.268 3398 REMARK 3 CHIRALITY : 0.079 372 REMARK 3 PLANARITY : 0.007 448 REMARK 3 DIHEDRAL : 11.742 880 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -3 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 85.4063 16.7980 16.4383 REMARK 3 T TENSOR REMARK 3 T11: 0.0920 T22: 0.0787 REMARK 3 T33: 0.0996 T12: 0.0088 REMARK 3 T13: -0.0015 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.4925 L22: 1.6308 REMARK 3 L33: 1.9289 L12: 0.2415 REMARK 3 L13: 0.1532 L23: -0.0823 REMARK 3 S TENSOR REMARK 3 S11: -0.0080 S12: 0.0855 S13: -0.0525 REMARK 3 S21: -0.1724 S22: 0.0389 S23: 0.0073 REMARK 3 S31: 0.1364 S32: -0.0302 S33: -0.0214 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 288 ) REMARK 3 ORIGIN FOR THE GROUP (A): 98.3891 10.9343 33.5350 REMARK 3 T TENSOR REMARK 3 T11: 0.1096 T22: 0.0741 REMARK 3 T33: 0.0824 T12: 0.0330 REMARK 3 T13: 0.0010 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 1.1605 L22: 0.6401 REMARK 3 L33: 0.6913 L12: -0.1059 REMARK 3 L13: 0.0194 L23: -0.0798 REMARK 3 S TENSOR REMARK 3 S11: 0.0082 S12: -0.0563 S13: -0.0022 REMARK 3 S21: 0.0004 S22: -0.0111 S23: -0.0421 REMARK 3 S31: 0.0955 S32: 0.0739 S33: 0.0023 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 289 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): 85.1956 25.7402 14.2290 REMARK 3 T TENSOR REMARK 3 T11: 0.0881 T22: 0.0171 REMARK 3 T33: 0.1017 T12: -0.0100 REMARK 3 T13: -0.0056 T23: -0.0180 REMARK 3 L TENSOR REMARK 3 L11: 1.0317 L22: 1.0963 REMARK 3 L33: 6.6304 L12: 0.1440 REMARK 3 L13: 0.4840 L23: -0.9493 REMARK 3 S TENSOR REMARK 3 S11: -0.0443 S12: 0.1117 S13: -0.0097 REMARK 3 S21: -0.1332 S22: 0.0841 S23: -0.0464 REMARK 3 S31: 0.0324 S32: -0.0235 S33: -0.0319 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4K7X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000079003. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX 225 HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58608 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 95.823 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.30 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : 0.13000 REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.50 REMARK 200 R MERGE FOR SHELL (I) : 0.69900 REMARK 200 R SYM FOR SHELL (I) : 0.69900 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 4J9W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (10 MM TRIS, 150 MM NACL, 5% REMARK 280 GLYCEROL, 5 MM BME, 20 MM PYRROLE 2-CARBOXYLATE); RESERVOIR (0.1 REMARK 280 M PHOSPHATE-CITRATE, 1.6 M NAH2PO4/0.4 M K2HPO4 (MCSG2 E10)); REMARK 280 CRYOPROTECTION (RESERVOIR+20% GLYCEROL), PH 4.2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 57.44250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 57.44250 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.84950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 57.44250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.42475 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 57.44250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 130.27425 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 57.44250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 130.27425 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.44250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.42475 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 57.44250 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 57.44250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 86.84950 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 57.44250 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 57.44250 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 86.84950 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 57.44250 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 130.27425 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 57.44250 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 43.42475 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 57.44250 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 43.42475 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 57.44250 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 130.27425 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 57.44250 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 57.44250 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 86.84950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -88.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 57.44250 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 43.42475 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 533 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 633 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 635 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 807 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 895 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 SER A 311 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 596 O HOH A 753 1.76 REMARK 500 O HOH A 610 O HOH A 810 1.89 REMARK 500 O HOH A 926 O HOH A 940 1.94 REMARK 500 O HOH A 720 O HOH A 894 1.95 REMARK 500 O HOH A 671 O HOH A 839 1.99 REMARK 500 O HOH A 661 O HOH A 758 2.04 REMARK 500 O HOH A 717 O HOH A 853 2.08 REMARK 500 OE2 GLU A 300 O HOH A 671 2.09 REMARK 500 O HOH A 704 O HOH A 858 2.10 REMARK 500 O HOH A 850 O HOH A 899 2.12 REMARK 500 O HOH A 674 O HOH A 785 2.16 REMARK 500 OE1 GLU A 42 O HOH A 572 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 700 O HOH A 749 10755 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 151 -41.92 -134.55 REMARK 500 ASP A 170 39.31 -94.03 REMARK 500 CYS A 237 101.71 76.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 408 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 216 O REMARK 620 2 HIS A 219 O 73.9 REMARK 620 3 HOH A 555 O 82.7 89.9 REMARK 620 4 HOH A 650 O 168.2 97.3 89.5 REMARK 620 5 HOH A 662 O 99.9 96.5 173.5 88.8 REMARK 620 6 HOH A 678 O 89.5 162.9 92.4 99.6 81.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 408 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-506479 RELATED DB: TARGETTRACK DBREF 4K7X A 1 311 UNP B3D6W2 B3D6W2_BURM1 1 311 SEQADV 4K7X MET A -21 UNP B3D6W2 EXPRESSION TAG SEQADV 4K7X HIS A -20 UNP B3D6W2 EXPRESSION TAG SEQADV 4K7X HIS A -19 UNP B3D6W2 EXPRESSION TAG SEQADV 4K7X HIS A -18 UNP B3D6W2 EXPRESSION TAG SEQADV 4K7X HIS A -17 UNP B3D6W2 EXPRESSION TAG SEQADV 4K7X HIS A -16 UNP B3D6W2 EXPRESSION TAG SEQADV 4K7X HIS A -15 UNP B3D6W2 EXPRESSION TAG SEQADV 4K7X SER A -14 UNP B3D6W2 EXPRESSION TAG SEQADV 4K7X SER A -13 UNP B3D6W2 EXPRESSION TAG SEQADV 4K7X GLY A -12 UNP B3D6W2 EXPRESSION TAG SEQADV 4K7X VAL A -11 UNP B3D6W2 EXPRESSION TAG SEQADV 4K7X ASP A -10 UNP B3D6W2 EXPRESSION TAG SEQADV 4K7X LEU A -9 UNP B3D6W2 EXPRESSION TAG SEQADV 4K7X GLY A -8 UNP B3D6W2 EXPRESSION TAG SEQADV 4K7X THR A -7 UNP B3D6W2 EXPRESSION TAG SEQADV 4K7X GLU A -6 UNP B3D6W2 EXPRESSION TAG SEQADV 4K7X ASN A -5 UNP B3D6W2 EXPRESSION TAG SEQADV 4K7X LEU A -4 UNP B3D6W2 EXPRESSION TAG SEQADV 4K7X TYR A -3 UNP B3D6W2 EXPRESSION TAG SEQADV 4K7X PHE A -2 UNP B3D6W2 EXPRESSION TAG SEQADV 4K7X GLN A -1 UNP B3D6W2 EXPRESSION TAG SEQADV 4K7X SER A 0 UNP B3D6W2 EXPRESSION TAG SEQRES 1 A 333 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 333 GLY THR GLU ASN LEU TYR PHE GLN SER MET MET LYS ARG SEQRES 3 A 333 ILE GLN ILE ILE ASP SER HIS THR GLY GLY GLU PRO THR SEQRES 4 A 333 ARG LEU VAL VAL SER GLY PHE PRO SER LEU GLY SER GLY SEQRES 5 A 333 THR MET ALA GLU ARG ARG ASP VAL LEU ALA ARG GLU TYR SEQRES 6 A 333 ASP ARG TYR ARG THR ALA CYS ILE LEU GLU PRO ARG GLY SEQRES 7 A 333 SER ASP VAL LEU VAL GLY ALA LEU LEU CYS GLU PRO VAL SEQRES 8 A 333 SER PRO ASP ALA ALA ALA GLY VAL ILE PHE PHE ASN ASN SEQRES 9 A 333 SER GLY TYR LEU GLY MET CYS GLY HIS GLY THR ILE GLY SEQRES 10 A 333 VAL VAL ARG THR LEU HIS HIS MET GLY ARG ILE GLY PRO SEQRES 11 A 333 GLY VAL HIS ARG ILE GLU THR PRO VAL GLY THR VAL GLU SEQRES 12 A 333 ALA THR LEU HIS ASP ASP LEU SER VAL SER VAL ARG ASN SEQRES 13 A 333 VAL LEU ALA TYR ARG HIS ALA LYS ASP VAL ALA LEU ASP SEQRES 14 A 333 VAL PRO GLY TYR GLY PRO VAL ARG GLY ASP ILE ALA TRP SEQRES 15 A 333 GLY GLY ASN TRP PHE PHE LEU ILE SER ASP HIS GLY GLN SEQRES 16 A 333 ARG VAL ALA GLY ASP ASN VAL ALA ALA LEU THR ALA TYR SEQRES 17 A 333 ALA SER ALA VAL ARG GLU GLY LEU GLU ARG ALA GLY ILE SEQRES 18 A 333 THR GLY ALA ASN GLY GLY GLU ILE ASP HIS ILE GLU LEU SEQRES 19 A 333 PHE ALA ASP ASP PRO GLU HIS ASP SER ARG SER PHE VAL SEQRES 20 A 333 LEU CYS PRO GLY LEU ALA TYR ASP ARG SER PRO CYS GLY SEQRES 21 A 333 THR GLY THR SER ALA LYS LEU ALA CYS LEU ALA ALA ASP SEQRES 22 A 333 GLY LYS LEU ALA PRO GLY ALA VAL TRP ARG GLN ALA SER SEQRES 23 A 333 VAL ILE GLY SER VAL PHE HIS ALA SER TYR VAL GLN ALA SEQRES 24 A 333 GLU GLY GLY ILE VAL PRO THR ILE ARG GLY SER ALA HIS SEQRES 25 A 333 LEU SER ALA GLU ALA THR LEU LEU ILE GLU ASP ASP ASP SEQRES 26 A 333 PRO PHE ARG TRP GLY ILE VAL SER HET PO4 A 401 5 HET PO4 A 402 5 HET PO4 A 403 5 HET PO4 A 404 5 HET PO4 A 405 5 HET CL A 406 1 HET GOL A 407 28 HET NA A 408 1 HETNAM PO4 PHOSPHATE ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 PO4 5(O4 P 3-) FORMUL 7 CL CL 1- FORMUL 8 GOL C3 H8 O3 FORMUL 9 NA NA 1+ FORMUL 10 HOH *463(H2 O) HELIX 1 1 THR A 31 TYR A 43 1 13 HELIX 2 2 TYR A 43 LEU A 52 1 10 HELIX 3 3 CYS A 89 MET A 103 1 15 HELIX 4 4 ALA A 176 ASP A 178 5 3 HELIX 5 5 ASN A 179 GLY A 198 1 20 HELIX 6 6 GLY A 201 GLY A 205 5 5 HELIX 7 7 CYS A 237 ASP A 251 1 15 SHEET 1 A 6 TYR A 138 VAL A 148 0 SHEET 2 A 6 GLY A 152 TRP A 160 -1 O GLY A 156 N VAL A 144 SHEET 3 A 6 TRP A 164 ILE A 168 -1 O LEU A 167 N ASP A 157 SHEET 4 A 6 HIS A 209 ALA A 214 1 O GLU A 211 N PHE A 166 SHEET 5 A 6 SER A 221 LEU A 226 -1 O PHE A 224 N LEU A 212 SHEET 6 A 6 TYR A 232 ASP A 233 -1 O ASP A 233 N VAL A 225 SHEET 1 B16 TYR A 138 VAL A 148 0 SHEET 2 B16 GLY A 152 TRP A 160 -1 O GLY A 156 N VAL A 144 SHEET 3 B16 TRP A 164 ILE A 168 -1 O LEU A 167 N ASP A 157 SHEET 4 B16 HIS A 209 ALA A 214 1 O GLU A 211 N PHE A 166 SHEET 5 B16 SER A 221 LEU A 226 -1 O PHE A 224 N LEU A 212 SHEET 6 B16 TRP A 260 SER A 264 1 O ALA A 263 N SER A 221 SHEET 7 B16 VAL A 269 ALA A 277 -1 O ALA A 272 N TRP A 260 SHEET 8 B16 GLY A 280 GLY A 287 -1 O ARG A 286 N HIS A 271 SHEET 9 B16 VAL A 130 ARG A 133 -1 N VAL A 132 O ILE A 285 SHEET 10 B16 VAL A 120 LEU A 124 -1 N THR A 123 O SER A 131 SHEET 11 B16 GLY A 109 GLU A 114 -1 N HIS A 111 O ALA A 122 SHEET 12 B16 ALA A 75 PHE A 80 1 N ALA A 75 O GLU A 114 SHEET 13 B16 GLY A 62 CYS A 66 -1 N LEU A 64 O ILE A 78 SHEET 14 B16 GLU A 15 SER A 22 1 N VAL A 20 O ALA A 63 SHEET 15 B16 MET A 2 THR A 12 -1 N SER A 10 O THR A 17 SHEET 16 B16 ALA A 289 GLU A 300 -1 O LEU A 297 N ILE A 5 LINK O ASP A 216 NA NA A 408 1555 1555 2.32 LINK O HIS A 219 NA NA A 408 1555 1555 2.30 LINK NA NA A 408 O HOH A 555 1555 1555 2.64 LINK NA NA A 408 O HOH A 650 1555 1555 2.34 LINK NA NA A 408 O HOH A 662 1555 1555 2.37 LINK NA NA A 408 O HOH A 678 1555 1555 2.43 CISPEP 1 GLU A 53 PRO A 54 0 4.93 SITE 1 AC1 7 CYS A 89 GLY A 90 HIS A 91 ASP A 233 SITE 2 AC1 7 CYS A 237 GLY A 238 THR A 239 SITE 1 AC2 4 ARG A 98 HIS A 101 HIS A 102 HOH A 634 SITE 1 AC3 10 LYS A 3 ARG A 306 TRP A 307 CL A 406 SITE 2 AC3 10 HOH A 591 HOH A 603 HOH A 777 HOH A 874 SITE 3 AC3 10 HOH A 875 HOH A 949 SITE 1 AC4 5 ALA A 74 HIS A 111 HOH A 552 HOH A 924 SITE 2 AC4 5 HOH A 932 SITE 1 AC5 9 MET A 1 MET A 2 LYS A 3 VAL A 269 SITE 2 AC5 9 HIS A 271 ASP A 301 HOH A 541 HOH A 949 SITE 3 AC5 9 HOH A 959 SITE 1 AC6 4 LYS A 3 ILE A 299 ASP A 301 PO4 A 403 SITE 1 AC7 15 ASP A 157 ILE A 158 LEU A 167 SER A 169 SITE 2 AC7 15 GLY A 198 ILE A 199 THR A 200 PHE A 213 SITE 3 AC7 15 LYS A 244 CYS A 247 HOH A 528 HOH A 533 SITE 4 AC7 15 HOH A 568 HOH A 611 HOH A 772 SITE 1 AC8 6 ASP A 216 HIS A 219 HOH A 555 HOH A 650 SITE 2 AC8 6 HOH A 662 HOH A 678 CRYST1 114.885 114.885 173.699 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008704 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008704 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005757 0.00000