HEADER OXIDOREDUCTASE 17-APR-13 4K7Y TITLE OYE1-W116T COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADPH DEHYDROGENASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: OLD YELLOW ENZYME 1; COMPND 5 EC: 1.6.99.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES PASTORIANUS; SOURCE 3 ORGANISM_COMMON: LAGER YEAST; SOURCE 4 ORGANISM_TAXID: 27292; SOURCE 5 GENE: OYE1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3B KEYWDS OLD YELLOW ENZYME, CARVONE, OXIDOREDUCTASE, TIM BARREL, NADPH KEYWDS 2 DEHYDROGENASE 1 EXPDTA X-RAY DIFFRACTION AUTHOR B.SULLIVAN,Y.A.POMPEU,J.D.STEWART REVDAT 2 28-FEB-24 4K7Y 1 REMARK SEQADV LINK REVDAT 1 09-OCT-13 4K7Y 0 JRNL AUTH Y.A.POMPEU,B.SULLIVAN,J.D.STEWART JRNL TITL X‑RAY CRYSTALLOGRAPHY REVEALS HOW SUBTLE CHANGES JRNL TITL 2 CONTROL THE ORIENTATION OF SUBSTRATE BINDING IN AN ALKENE JRNL TITL 3 REDUCTASE JRNL REF ACS CATALYSIS V. 3 2376 2013 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/CS400622E REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 135136 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.117 REMARK 3 R VALUE (WORKING SET) : 0.115 REMARK 3 FREE R VALUE : 0.135 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 12978 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.5961 - 3.7212 0.99 4373 486 0.1529 0.1553 REMARK 3 2 3.7212 - 2.9555 1.00 4185 465 0.1310 0.1492 REMARK 3 3 2.9555 - 2.5824 1.00 4152 462 0.1229 0.1368 REMARK 3 4 2.5824 - 2.3465 1.00 4129 459 0.1116 0.1261 REMARK 3 5 2.3465 - 2.1785 1.00 4098 455 0.0997 0.1094 REMARK 3 6 2.1785 - 2.0501 1.00 4077 453 0.0930 0.1127 REMARK 3 7 2.0501 - 1.9475 1.00 4075 453 0.0932 0.1127 REMARK 3 8 1.9475 - 1.8627 1.00 4079 453 0.0919 0.1136 REMARK 3 9 1.8627 - 1.7911 1.00 4073 453 0.0859 0.1085 REMARK 3 10 1.7911 - 1.7293 1.00 4073 452 0.0831 0.1152 REMARK 3 11 1.7293 - 1.6752 1.00 4054 450 0.0798 0.1047 REMARK 3 12 1.6752 - 1.6273 1.00 4056 451 0.0752 0.1005 REMARK 3 13 1.6273 - 1.5845 1.00 3999 445 0.0770 0.1097 REMARK 3 14 1.5845 - 1.5459 1.00 4081 453 0.0761 0.1061 REMARK 3 15 1.5459 - 1.5107 1.00 4039 449 0.1040 0.1315 REMARK 3 16 1.5107 - 1.4786 1.00 4009 445 0.1061 0.1273 REMARK 3 17 1.4786 - 1.4490 1.00 4035 448 0.1110 0.1381 REMARK 3 18 1.4490 - 1.4217 1.00 4052 450 0.1071 0.1345 REMARK 3 19 1.4217 - 1.3963 1.00 4020 448 0.1062 0.1315 REMARK 3 20 1.3963 - 1.3726 1.00 4030 447 0.1123 0.1403 REMARK 3 21 1.3726 - 1.3505 1.00 4012 445 0.1049 0.1346 REMARK 3 22 1.3505 - 1.3297 1.00 4030 448 0.1087 0.1469 REMARK 3 23 1.3297 - 1.3101 1.00 4003 446 0.1208 0.1525 REMARK 3 24 1.3101 - 1.2917 1.00 4000 444 0.1255 0.1536 REMARK 3 25 1.2917 - 1.2742 1.00 4054 450 0.1426 0.1715 REMARK 3 26 1.2742 - 1.2577 1.00 3989 443 0.1560 0.2008 REMARK 3 27 1.2577 - 1.2420 1.00 4024 447 0.1739 0.1924 REMARK 3 28 1.2420 - 1.2270 1.00 3975 442 0.2127 0.2216 REMARK 3 29 1.2270 - 1.2127 1.00 4051 451 0.2401 0.2769 REMARK 3 30 1.2127 - 1.1991 0.95 3795 421 0.2812 0.3067 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 9.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3535 REMARK 3 ANGLE : 1.364 4828 REMARK 3 CHIRALITY : 0.081 499 REMARK 3 PLANARITY : 0.008 637 REMARK 3 DIHEDRAL : 14.232 1372 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4K7Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000079004. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.88560 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 135203 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.199 REMARK 200 RESOLUTION RANGE LOW (A) : 23.596 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.2100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 0.1M HEPES, 30-40% PEG400, REMARK 280 PH 8.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.41600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 70.66350 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 70.66350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.12400 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 70.66350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 70.66350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 10.70800 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 70.66350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.66350 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.12400 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 70.66350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.66350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 10.70800 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 21.41600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 409 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 770 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 771 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 957 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 993 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1107 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 5 -21.11 81.98 REMARK 500 ALA A 193 -154.78 -124.79 REMARK 500 ASN A 194 3.56 59.48 REMARK 500 ASP A 355 37.55 -98.58 REMARK 500 TYR A 382 -60.00 -129.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 406 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 372 O REMARK 620 2 TYR A 375 O 105.1 REMARK 620 3 TYR A 375 O 119.9 14.9 REMARK 620 4 HOH A1045 O 101.9 91.1 86.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 695 O REMARK 620 2 HOH A1136 O 87.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 410 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PEG A 405 O2 REMARK 620 2 PEG A 405 O4 54.2 REMARK 620 3 PEG A 405 O1 56.8 101.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 409 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 672 O REMARK 620 2 HOH A 677 O 90.9 REMARK 620 3 HOH A 770 O 90.9 89.1 REMARK 620 4 HOH A 771 O 89.1 90.9 180.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 410 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GE8 RELATED DB: PDB REMARK 900 OYE1-W116I COMPLEXED WITH (S)-CARVONE REMARK 900 RELATED ID: 4GXM RELATED DB: PDB REMARK 900 OYE1-W116L COMPLEXED WITH THE AROMATIC PRODUCT OF (R)-CARVONE REMARK 900 DISMUTATION REMARK 900 RELATED ID: 4GWE RELATED DB: PDB REMARK 900 OYE1-W116L COMPLEXED WITH (R)-CARVONE REMARK 900 RELATED ID: 4H4I RELATED DB: PDB REMARK 900 OYE1-W116V COMPLEXED WITH THE AROMATIC PRODUCT OF (S)-CARVONE REMARK 900 DISMUTATION REMARK 900 RELATED ID: 4GBU RELATED DB: PDB REMARK 900 OYE1-W116A COMPLEXED WITH THE AROMATIC PRODUCT OF (S)-CARVONE REMARK 900 DISMUTATION REMARK 900 RELATED ID: 4H6K RELATED DB: PDB REMARK 900 OYE1-W116I REMARK 900 RELATED ID: 3TXZ RELATED DB: PDB REMARK 900 OYE1-W116Q COMPLEXED WITH (R)-CARVONE REMARK 900 RELATED ID: 4K7V RELATED DB: PDB REMARK 900 OYE1-W116A COMPLEXED WITH (R)-CARVONE REMARK 900 RELATED ID: 4K8E RELATED DB: PDB REMARK 900 OYE1-W116V COMPLEXED WITH THE AROMATIC PRODUCT OF (R)-CARVONE REMARK 900 DISMUTATION REMARK 900 RELATED ID: 4K8H RELATED DB: PDB REMARK 900 OYE1-W116V COMPLEXED WITH (R)-CARVONE REMARK 900 RELATED ID: 3RND RELATED DB: PDB REMARK 900 RELATED ID: 3TX9 RELATED DB: PDB DBREF 4K7Y A 0 399 UNP Q02899 OYE1_SACPS 1 400 SEQADV 4K7Y THR A 116 UNP Q02899 TRP 117 ENGINEERED MUTATION SEQRES 1 A 400 MET SER PHE VAL LYS ASP PHE LYS PRO GLN ALA LEU GLY SEQRES 2 A 400 ASP THR ASN LEU PHE LYS PRO ILE LYS ILE GLY ASN ASN SEQRES 3 A 400 GLU LEU LEU HIS ARG ALA VAL ILE PRO PRO LEU THR ARG SEQRES 4 A 400 MET ARG ALA LEU HIS PRO GLY ASN ILE PRO ASN ARG ASP SEQRES 5 A 400 TRP ALA VAL GLU TYR TYR THR GLN ARG ALA GLN ARG PRO SEQRES 6 A 400 GLY THR MET ILE ILE THR GLU GLY ALA PHE ILE SER PRO SEQRES 7 A 400 GLN ALA GLY GLY TYR ASP ASN ALA PRO GLY VAL TRP SER SEQRES 8 A 400 GLU GLU GLN MET VAL GLU TRP THR LYS ILE PHE ASN ALA SEQRES 9 A 400 ILE HIS GLU LYS LYS SER PHE VAL TRP VAL GLN LEU THR SEQRES 10 A 400 VAL LEU GLY TRP ALA ALA PHE PRO ASP ASN LEU ALA ARG SEQRES 11 A 400 ASP GLY LEU ARG TYR ASP SER ALA SER ASP ASN VAL PHE SEQRES 12 A 400 MET ASP ALA GLU GLN GLU ALA LYS ALA LYS LYS ALA ASN SEQRES 13 A 400 ASN PRO GLN HIS SER LEU THR LYS ASP GLU ILE LYS GLN SEQRES 14 A 400 TYR ILE LYS GLU TYR VAL GLN ALA ALA LYS ASN SER ILE SEQRES 15 A 400 ALA ALA GLY ALA ASP GLY VAL GLU ILE HIS SER ALA ASN SEQRES 16 A 400 GLY TYR LEU LEU ASN GLN PHE LEU ASP PRO HIS SER ASN SEQRES 17 A 400 THR ARG THR ASP GLU TYR GLY GLY SER ILE GLU ASN ARG SEQRES 18 A 400 ALA ARG PHE THR LEU GLU VAL VAL ASP ALA LEU VAL GLU SEQRES 19 A 400 ALA ILE GLY HIS GLU LYS VAL GLY LEU ARG LEU SER PRO SEQRES 20 A 400 TYR GLY VAL PHE ASN SER MET SER GLY GLY ALA GLU THR SEQRES 21 A 400 GLY ILE VAL ALA GLN TYR ALA TYR VAL ALA GLY GLU LEU SEQRES 22 A 400 GLU LYS ARG ALA LYS ALA GLY LYS ARG LEU ALA PHE VAL SEQRES 23 A 400 HIS LEU VAL GLU PRO ARG VAL THR ASN PRO PHE LEU THR SEQRES 24 A 400 GLU GLY GLU GLY GLU TYR GLU GLY GLY SER ASN ASP PHE SEQRES 25 A 400 VAL TYR SER ILE TRP LYS GLY PRO VAL ILE ARG ALA GLY SEQRES 26 A 400 ASN PHE ALA LEU HIS PRO GLU VAL VAL ARG GLU GLU VAL SEQRES 27 A 400 LYS ASP LYS ARG THR LEU ILE GLY TYR GLY ARG PHE PHE SEQRES 28 A 400 ILE SER ASN PRO ASP LEU VAL ASP ARG LEU GLU LYS GLY SEQRES 29 A 400 LEU PRO LEU ASN LYS TYR ASP ARG ASP THR PHE TYR GLN SEQRES 30 A 400 MET SER ALA HIS GLY TYR ILE ASP TYR PRO THR TYR GLU SEQRES 31 A 400 GLU ALA LEU LYS LEU GLY TRP ASP LYS LYS HET FMN A 401 50 HET MG A 402 1 HET PEG A 403 7 HET PEG A 404 7 HET PEG A 405 7 HET MG A 406 1 HET CL A 407 1 HET CL A 408 1 HET MG A 409 1 HET NA A 410 1 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM MG MAGNESIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 MG 3(MG 2+) FORMUL 4 PEG 3(C4 H10 O3) FORMUL 8 CL 2(CL 1-) FORMUL 11 NA NA 1+ FORMUL 12 HOH *666(H2 O) HELIX 1 1 THR A 14 LYS A 18 5 5 HELIX 2 2 TRP A 52 ALA A 61 1 10 HELIX 3 3 SER A 76 GLY A 80 5 5 HELIX 4 4 SER A 90 LYS A 107 1 18 HELIX 5 5 LEU A 118 ALA A 122 5 5 HELIX 6 6 PHE A 123 ASP A 130 1 8 HELIX 7 7 ASP A 144 ALA A 154 1 11 HELIX 8 8 THR A 162 ALA A 183 1 22 HELIX 9 9 TYR A 196 ASP A 203 1 8 HELIX 10 10 SER A 216 ALA A 221 1 6 HELIX 11 11 ALA A 221 GLY A 236 1 16 HELIX 12 12 VAL A 249 MET A 253 5 5 HELIX 13 13 SER A 254 GLU A 258 5 5 HELIX 14 14 GLY A 260 ALA A 278 1 19 HELIX 15 15 ASP A 310 TRP A 316 1 7 HELIX 16 16 HIS A 329 VAL A 337 1 9 HELIX 17 17 GLY A 347 ASN A 353 1 7 HELIX 18 18 ASP A 355 GLY A 363 1 9 HELIX 19 19 ASP A 370 PHE A 374 5 5 HELIX 20 20 THR A 387 LEU A 394 1 8 SHEET 1 A 2 ILE A 20 ILE A 22 0 SHEET 2 A 2 ASN A 25 LEU A 27 -1 O ASN A 25 N ILE A 22 SHEET 1 B 8 ALA A 31 VAL A 32 0 SHEET 2 B 8 THR A 342 GLY A 345 1 O ILE A 344 N VAL A 32 SHEET 3 B 8 VAL A 320 ALA A 323 1 N ARG A 322 O GLY A 345 SHEET 4 B 8 PHE A 284 VAL A 288 1 N LEU A 287 O ILE A 321 SHEET 5 B 8 VAL A 240 LEU A 244 1 N LEU A 242 O HIS A 286 SHEET 6 B 8 GLY A 187 HIS A 191 1 N ILE A 190 O GLY A 241 SHEET 7 B 8 PHE A 110 THR A 116 1 N LEU A 115 O GLU A 189 SHEET 8 B 8 MET A 67 ILE A 69 1 N ILE A 68 O TRP A 112 SHEET 1 C 8 ALA A 31 VAL A 32 0 SHEET 2 C 8 THR A 342 GLY A 345 1 O ILE A 344 N VAL A 32 SHEET 3 C 8 VAL A 320 ALA A 323 1 N ARG A 322 O GLY A 345 SHEET 4 C 8 PHE A 284 VAL A 288 1 N LEU A 287 O ILE A 321 SHEET 5 C 8 VAL A 240 LEU A 244 1 N LEU A 242 O HIS A 286 SHEET 6 C 8 GLY A 187 HIS A 191 1 N ILE A 190 O GLY A 241 SHEET 7 C 8 PHE A 110 THR A 116 1 N LEU A 115 O GLU A 189 SHEET 8 C 8 ALA A 73 PHE A 74 1 N ALA A 73 O THR A 116 SHEET 1 D 2 ASP A 135 SER A 136 0 SHEET 2 D 2 HIS A 159 SER A 160 1 O HIS A 159 N SER A 136 LINK O ASP A 372 MG MG A 406 1555 1555 2.46 LINK O ATYR A 375 MG MG A 406 1555 1555 2.29 LINK O BTYR A 375 MG MG A 406 1555 1555 2.65 LINK MG MG A 402 O HOH A 695 1555 1555 2.14 LINK MG MG A 402 O HOH A1136 1555 1555 2.26 LINK O2 PEG A 405 NA NA A 410 1555 1555 2.82 LINK O4 PEG A 405 NA NA A 410 1555 1555 2.93 LINK O1 PEG A 405 NA NA A 410 1555 1555 3.01 LINK MG MG A 406 O HOH A1045 1555 1555 2.49 LINK MG MG A 409 O HOH A 672 1555 1555 2.06 LINK MG MG A 409 O HOH A 677 1555 1555 2.09 LINK MG MG A 409 O HOH A 770 1555 1555 2.06 LINK MG MG A 409 O HOH A 771 1555 1555 2.06 CISPEP 1 HIS A 43 PRO A 44 0 2.75 SITE 1 AC1 22 PRO A 34 PRO A 35 LEU A 36 THR A 37 SITE 2 AC1 22 GLY A 72 GLN A 114 HIS A 191 ASN A 194 SITE 3 AC1 22 ARG A 243 PRO A 295 GLY A 324 ASN A 325 SITE 4 AC1 22 GLY A 347 ARG A 348 PHE A 374 TYR A 375 SITE 5 AC1 22 CL A 407 HOH A 501 HOH A 502 HOH A 524 SITE 6 AC1 22 HOH A 537 HOH A 723 SITE 1 AC2 6 HOH A 695 HOH A 779 HOH A 907 HOH A 940 SITE 2 AC2 6 HOH A 970 HOH A1136 SITE 1 AC3 6 ASP A 370 HIS A 380 ASP A 384 TYR A 385 SITE 2 AC3 6 HOH A1048 HOH A1166 SITE 1 AC4 9 ALA A 10 HIS A 43 ASP A 83 ASN A 84 SITE 2 AC4 9 ARG A 129 ARG A 334 HOH A 653 HOH A 725 SITE 3 AC4 9 HOH A 967 SITE 1 AC5 4 ASP A 358 GLU A 389 NA A 410 HOH A1115 SITE 1 AC6 4 ASP A 372 TYR A 375 GLN A 376 HOH A1045 SITE 1 AC7 5 HIS A 191 ASN A 194 TYR A 196 FMN A 401 SITE 2 AC7 5 HOH A1165 SITE 1 AC8 2 ASP A 83 ASN A 126 SITE 1 AC9 4 HOH A 672 HOH A 677 HOH A 770 HOH A 771 SITE 1 BC1 2 TRP A 52 PEG A 405 CRYST1 141.327 141.327 42.832 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007076 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007076 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023347 0.00000