HEADER TRANSCRIPTION 18-APR-13 4K8F TITLE STRUCTURE OF THE HEME DOMAIN OF COOA FROM RHODOSPIRILLUM RUBRUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, CRP/FNR FAMILY; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 2-131; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOSPIRILLUM RUBRUM; SOURCE 3 ORGANISM_TAXID: 269796; SOURCE 4 STRAIN: ATCC 11170 / NCIB 8255; SOURCE 5 GENE: RRU_A1431; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: UQ1904; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS HEME PROTEIN, COOA TRANSCRIPTION FACTOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR M.KUCHINSKAS,H.LI,T.L.POULOS REVDAT 2 20-SEP-23 4K8F 1 REMARK SEQADV LINK REVDAT 1 05-JUN-13 4K8F 0 JRNL AUTH M.KUCHINSKAS,H.LI,M.CONRAD,G.ROBERTS,T.L.POULOS JRNL TITL THE ROLE OF THE DNA-BINDING DOMAINS IN COOA ACTIVATION. JRNL REF BIOCHEMISTRY V. 45 7148 2006 JRNL REFN ISSN 0006-2960 JRNL PMID 16752905 JRNL DOI 10.1021/BI052609O REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 19684 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.920 REMARK 3 FREE R VALUE TEST SET COUNT : 1952 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.6181 - 6.4893 0.99 1278 142 0.1613 0.2000 REMARK 3 2 6.4893 - 5.1558 1.00 1274 141 0.2120 0.2456 REMARK 3 3 5.1558 - 4.5055 1.00 1274 140 0.1698 0.2370 REMARK 3 4 4.5055 - 4.0942 1.00 1278 138 0.1653 0.2122 REMARK 3 5 4.0942 - 3.8011 1.00 1257 145 0.1742 0.2928 REMARK 3 6 3.8011 - 3.5772 1.00 1248 143 0.2048 0.2756 REMARK 3 7 3.5772 - 3.3982 1.00 1268 138 0.2101 0.3037 REMARK 3 8 3.3982 - 3.2504 1.00 1253 137 0.2082 0.3026 REMARK 3 9 3.2504 - 3.1253 1.00 1290 138 0.2188 0.2764 REMARK 3 10 3.1253 - 3.0175 1.00 1263 137 0.2414 0.3404 REMARK 3 11 3.0175 - 2.9232 1.00 1283 140 0.2649 0.3774 REMARK 3 12 2.9232 - 2.8397 1.00 1245 135 0.2744 0.3622 REMARK 3 13 2.8397 - 2.7650 1.00 1262 141 0.3183 0.3656 REMARK 3 14 2.7650 - 2.6976 1.00 1259 137 0.3048 0.3512 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 44.16 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.790 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.21500 REMARK 3 B22 (A**2) : 7.21500 REMARK 3 B33 (A**2) : -14.42990 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4432 REMARK 3 ANGLE : 1.210 6028 REMARK 3 CHIRALITY : 0.071 636 REMARK 3 PLANARITY : 0.004 760 REMARK 3 DIHEDRAL : 18.865 1588 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4K8F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000079021. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19766 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : 0.06600 REMARK 200 FOR THE DATA SET : 22.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.50 REMARK 200 R MERGE FOR SHELL (I) : 0.65000 REMARK 200 R SYM FOR SHELL (I) : 0.65000 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1FT9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG8000, 100 MM CHES 5 MM REMARK 280 DITHIONITE IN AN ANAEROBIC CHAMBER , PH 9.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.86650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.93325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 107.79975 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 134 REMARK 465 HIS A 135 REMARK 465 HIS A 136 REMARK 465 HIS A 137 REMARK 465 HIS B 134 REMARK 465 HIS B 135 REMARK 465 HIS B 136 REMARK 465 HIS B 137 REMARK 465 HIS C 134 REMARK 465 HIS C 135 REMARK 465 HIS C 136 REMARK 465 HIS C 137 REMARK 465 HIS D 134 REMARK 465 HIS D 135 REMARK 465 HIS D 136 REMARK 465 HIS D 137 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 17 O HOH B 403 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG B 24 OE2 GLU C 83 4564 2.07 REMARK 500 OE1 GLU A 17 NH2 ARG B 91 3655 2.08 REMARK 500 OE1 GLU C 17 NH2 ARG D 91 3555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 38 -133.10 -136.07 REMARK 500 GLU A 41 -135.35 159.90 REMARK 500 VAL A 57 -148.95 -121.73 REMARK 500 ASP B 129 -70.07 -65.11 REMARK 500 LEU B 130 -17.81 -40.76 REMARK 500 ASP C 40 -80.05 -54.14 REMARK 500 GLU C 59 104.26 -19.30 REMARK 500 GLU C 60 60.14 66.13 REMARK 500 ARG C 61 151.45 130.61 REMARK 500 LYS D 30 121.30 -36.48 REMARK 500 GLU D 38 -89.41 -85.44 REMARK 500 ASP D 40 37.92 -70.87 REMARK 500 ASP D 49 135.51 -175.67 REMARK 500 GLU D 59 67.86 61.60 REMARK 500 HIS D 132 76.07 -59.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 300 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 2 N REMARK 620 2 HEM B 300 NA 82.4 REMARK 620 3 HEM B 300 NB 90.7 90.8 REMARK 620 4 HEM B 300 NC 101.5 176.0 90.0 REMARK 620 5 HEM B 300 ND 91.9 88.5 177.1 90.6 REMARK 620 6 HIS B 77 NE2 168.9 86.8 92.0 89.3 85.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 300 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 77 NE2 REMARK 620 2 HEM A 300 NA 84.7 REMARK 620 3 HEM A 300 NB 92.0 83.8 REMARK 620 4 HEM A 300 NC 91.5 175.9 94.8 REMARK 620 5 HEM A 300 ND 82.6 90.0 172.1 91.1 REMARK 620 6 PRO B 2 N 168.0 83.4 87.3 100.4 96.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM D 300 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO C 2 N REMARK 620 2 HEM D 300 NA 86.5 REMARK 620 3 HEM D 300 NB 88.9 90.1 REMARK 620 4 HEM D 300 NC 93.2 176.5 93.4 REMARK 620 5 HEM D 300 ND 90.6 87.0 177.1 89.5 REMARK 620 6 HIS D 77 NE2 173.2 95.3 97.7 84.6 82.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 300 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 77 NE2 REMARK 620 2 HEM C 300 NA 96.5 REMARK 620 3 HEM C 300 NB 92.6 88.4 REMARK 620 4 HEM C 300 NC 88.0 175.2 89.8 REMARK 620 5 HEM C 300 ND 93.0 90.3 174.3 91.1 REMARK 620 6 PRO D 2 N 167.9 73.8 80.0 101.5 94.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM C 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM D 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FT9 RELATED DB: PDB REMARK 900 STRUCTURE OF HOLO-COOA WITH BOTH THE HEME AND DNA BINDING DOMAINS DBREF 4K8F A 2 131 UNP Q2RUG3 Q2RUG3_RHORT 2 131 DBREF 4K8F B 2 131 UNP Q2RUG3 Q2RUG3_RHORT 2 131 DBREF 4K8F C 2 131 UNP Q2RUG3 Q2RUG3_RHORT 2 131 DBREF 4K8F D 2 131 UNP Q2RUG3 Q2RUG3_RHORT 2 131 SEQADV 4K8F HIS A 132 UNP Q2RUG3 EXPRESSION TAG SEQADV 4K8F HIS A 133 UNP Q2RUG3 EXPRESSION TAG SEQADV 4K8F HIS A 134 UNP Q2RUG3 EXPRESSION TAG SEQADV 4K8F HIS A 135 UNP Q2RUG3 EXPRESSION TAG SEQADV 4K8F HIS A 136 UNP Q2RUG3 EXPRESSION TAG SEQADV 4K8F HIS A 137 UNP Q2RUG3 EXPRESSION TAG SEQADV 4K8F HIS B 132 UNP Q2RUG3 EXPRESSION TAG SEQADV 4K8F HIS B 133 UNP Q2RUG3 EXPRESSION TAG SEQADV 4K8F HIS B 134 UNP Q2RUG3 EXPRESSION TAG SEQADV 4K8F HIS B 135 UNP Q2RUG3 EXPRESSION TAG SEQADV 4K8F HIS B 136 UNP Q2RUG3 EXPRESSION TAG SEQADV 4K8F HIS B 137 UNP Q2RUG3 EXPRESSION TAG SEQADV 4K8F HIS C 132 UNP Q2RUG3 EXPRESSION TAG SEQADV 4K8F HIS C 133 UNP Q2RUG3 EXPRESSION TAG SEQADV 4K8F HIS C 134 UNP Q2RUG3 EXPRESSION TAG SEQADV 4K8F HIS C 135 UNP Q2RUG3 EXPRESSION TAG SEQADV 4K8F HIS C 136 UNP Q2RUG3 EXPRESSION TAG SEQADV 4K8F HIS C 137 UNP Q2RUG3 EXPRESSION TAG SEQADV 4K8F HIS D 132 UNP Q2RUG3 EXPRESSION TAG SEQADV 4K8F HIS D 133 UNP Q2RUG3 EXPRESSION TAG SEQADV 4K8F HIS D 134 UNP Q2RUG3 EXPRESSION TAG SEQADV 4K8F HIS D 135 UNP Q2RUG3 EXPRESSION TAG SEQADV 4K8F HIS D 136 UNP Q2RUG3 EXPRESSION TAG SEQADV 4K8F HIS D 137 UNP Q2RUG3 EXPRESSION TAG SEQRES 1 A 136 PRO PRO ARG PHE ASN ILE ALA ASN VAL LEU LEU SER PRO SEQRES 2 A 136 ASP GLY GLU THR PHE PHE ARG GLY PHE ARG SER LYS ILE SEQRES 3 A 136 HIS ALA LYS GLY SER LEU VAL CYS THR GLY GLU GLY ASP SEQRES 4 A 136 GLU ASN GLY VAL PHE VAL VAL VAL ASP GLY ARG LEU ARG SEQRES 5 A 136 VAL TYR LEU VAL GLY GLU GLU ARG GLU ILE SER LEU PHE SEQRES 6 A 136 TYR LEU THR SER GLY ASP MET PHE CYS MET HIS SER GLY SEQRES 7 A 136 CYS LEU VAL GLU ALA THR GLU ARG THR GLU VAL ARG PHE SEQRES 8 A 136 ALA ASP ILE ARG THR PHE GLU GLN LYS LEU GLN THR CYS SEQRES 9 A 136 PRO SER MET ALA TRP GLY LEU ILE ALA ILE LEU GLY ARG SEQRES 10 A 136 ALA LEU THR SER CYS MET ARG THR ILE GLU ASP LEU MET SEQRES 11 A 136 HIS HIS HIS HIS HIS HIS SEQRES 1 B 136 PRO PRO ARG PHE ASN ILE ALA ASN VAL LEU LEU SER PRO SEQRES 2 B 136 ASP GLY GLU THR PHE PHE ARG GLY PHE ARG SER LYS ILE SEQRES 3 B 136 HIS ALA LYS GLY SER LEU VAL CYS THR GLY GLU GLY ASP SEQRES 4 B 136 GLU ASN GLY VAL PHE VAL VAL VAL ASP GLY ARG LEU ARG SEQRES 5 B 136 VAL TYR LEU VAL GLY GLU GLU ARG GLU ILE SER LEU PHE SEQRES 6 B 136 TYR LEU THR SER GLY ASP MET PHE CYS MET HIS SER GLY SEQRES 7 B 136 CYS LEU VAL GLU ALA THR GLU ARG THR GLU VAL ARG PHE SEQRES 8 B 136 ALA ASP ILE ARG THR PHE GLU GLN LYS LEU GLN THR CYS SEQRES 9 B 136 PRO SER MET ALA TRP GLY LEU ILE ALA ILE LEU GLY ARG SEQRES 10 B 136 ALA LEU THR SER CYS MET ARG THR ILE GLU ASP LEU MET SEQRES 11 B 136 HIS HIS HIS HIS HIS HIS SEQRES 1 C 136 PRO PRO ARG PHE ASN ILE ALA ASN VAL LEU LEU SER PRO SEQRES 2 C 136 ASP GLY GLU THR PHE PHE ARG GLY PHE ARG SER LYS ILE SEQRES 3 C 136 HIS ALA LYS GLY SER LEU VAL CYS THR GLY GLU GLY ASP SEQRES 4 C 136 GLU ASN GLY VAL PHE VAL VAL VAL ASP GLY ARG LEU ARG SEQRES 5 C 136 VAL TYR LEU VAL GLY GLU GLU ARG GLU ILE SER LEU PHE SEQRES 6 C 136 TYR LEU THR SER GLY ASP MET PHE CYS MET HIS SER GLY SEQRES 7 C 136 CYS LEU VAL GLU ALA THR GLU ARG THR GLU VAL ARG PHE SEQRES 8 C 136 ALA ASP ILE ARG THR PHE GLU GLN LYS LEU GLN THR CYS SEQRES 9 C 136 PRO SER MET ALA TRP GLY LEU ILE ALA ILE LEU GLY ARG SEQRES 10 C 136 ALA LEU THR SER CYS MET ARG THR ILE GLU ASP LEU MET SEQRES 11 C 136 HIS HIS HIS HIS HIS HIS SEQRES 1 D 136 PRO PRO ARG PHE ASN ILE ALA ASN VAL LEU LEU SER PRO SEQRES 2 D 136 ASP GLY GLU THR PHE PHE ARG GLY PHE ARG SER LYS ILE SEQRES 3 D 136 HIS ALA LYS GLY SER LEU VAL CYS THR GLY GLU GLY ASP SEQRES 4 D 136 GLU ASN GLY VAL PHE VAL VAL VAL ASP GLY ARG LEU ARG SEQRES 5 D 136 VAL TYR LEU VAL GLY GLU GLU ARG GLU ILE SER LEU PHE SEQRES 6 D 136 TYR LEU THR SER GLY ASP MET PHE CYS MET HIS SER GLY SEQRES 7 D 136 CYS LEU VAL GLU ALA THR GLU ARG THR GLU VAL ARG PHE SEQRES 8 D 136 ALA ASP ILE ARG THR PHE GLU GLN LYS LEU GLN THR CYS SEQRES 9 D 136 PRO SER MET ALA TRP GLY LEU ILE ALA ILE LEU GLY ARG SEQRES 10 D 136 ALA LEU THR SER CYS MET ARG THR ILE GLU ASP LEU MET SEQRES 11 D 136 HIS HIS HIS HIS HIS HIS HET HEM A 300 43 HET HEM B 300 43 HET HEM C 300 43 HET HEM D 300 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 5 HEM 4(C34 H32 FE N4 O4) FORMUL 9 HOH *28(H2 O) HELIX 1 1 ILE A 7 LEU A 12 1 6 HELIX 2 2 ASP A 94 CYS A 105 1 12 HELIX 3 3 MET A 108 HIS A 132 1 25 HELIX 4 4 ASN B 6 SER B 13 1 8 HELIX 5 5 ASP B 94 CYS B 105 1 12 HELIX 6 6 MET B 108 HIS B 132 1 25 HELIX 7 7 ASN C 6 LEU C 12 1 7 HELIX 8 8 ASP C 94 CYS C 105 1 12 HELIX 9 9 MET C 108 MET C 131 1 24 HELIX 10 10 ASN D 6 SER D 13 1 8 HELIX 11 11 ASP D 94 CYS D 105 1 12 HELIX 12 12 MET D 108 HIS D 132 1 25 SHEET 1 A 4 ARG A 24 HIS A 28 0 SHEET 2 A 4 THR A 88 ALA A 93 -1 O THR A 88 N HIS A 28 SHEET 3 A 4 VAL A 44 ASP A 49 -1 N VAL A 44 O ALA A 93 SHEET 4 A 4 MET A 73 CYS A 75 -1 O PHE A 74 N PHE A 45 SHEET 1 B 4 LEU A 33 CYS A 35 0 SHEET 2 B 4 LEU A 81 ALA A 84 -1 O VAL A 82 N CYS A 35 SHEET 3 B 4 LEU A 52 LEU A 56 -1 N ARG A 53 O GLU A 83 SHEET 4 B 4 ILE A 63 LEU A 68 -1 O LEU A 65 N VAL A 54 SHEET 1 C 4 ARG B 24 HIS B 28 0 SHEET 2 C 4 THR B 88 ALA B 93 -1 O PHE B 92 N ARG B 24 SHEET 3 C 4 VAL B 44 ASP B 49 -1 N VAL B 48 O GLU B 89 SHEET 4 C 4 MET B 73 CYS B 75 -1 O PHE B 74 N PHE B 45 SHEET 1 D 4 LEU B 33 CYS B 35 0 SHEET 2 D 4 LEU B 81 ALA B 84 -1 O VAL B 82 N VAL B 34 SHEET 3 D 4 ARG B 51 LEU B 56 -1 N ARG B 53 O GLU B 83 SHEET 4 D 4 ILE B 63 THR B 69 -1 O LEU B 65 N VAL B 54 SHEET 1 E 4 ARG C 24 HIS C 28 0 SHEET 2 E 4 THR C 88 ALA C 93 -1 O THR C 88 N HIS C 28 SHEET 3 E 4 VAL C 44 ASP C 49 -1 N VAL C 44 O ALA C 93 SHEET 4 E 4 MET C 73 CYS C 75 -1 O PHE C 74 N PHE C 45 SHEET 1 F 4 LEU C 33 CYS C 35 0 SHEET 2 F 4 LEU C 81 ALA C 84 -1 O VAL C 82 N CYS C 35 SHEET 3 F 4 LEU C 52 GLY C 58 -1 N ARG C 53 O GLU C 83 SHEET 4 F 4 ARG C 61 LEU C 68 -1 O LEU C 65 N VAL C 54 SHEET 1 G 4 ARG D 24 HIS D 28 0 SHEET 2 G 4 LEU D 81 ALA D 93 -1 O PHE D 92 N ARG D 24 SHEET 3 G 4 VAL D 44 VAL D 57 -1 N ARG D 53 O GLU D 83 SHEET 4 G 4 GLU D 62 THR D 69 -1 O PHE D 66 N VAL D 54 SHEET 1 H 4 LEU D 33 CYS D 35 0 SHEET 2 H 4 LEU D 81 ALA D 93 -1 O VAL D 82 N VAL D 34 SHEET 3 H 4 VAL D 44 VAL D 57 -1 N ARG D 53 O GLU D 83 SHEET 4 H 4 MET D 73 CYS D 75 -1 O PHE D 74 N PHE D 45 LINK N PRO A 2 FE HEM B 300 1555 1555 2.33 LINK NE2 HIS A 77 FE HEM A 300 1555 1555 2.07 LINK FE HEM A 300 N PRO B 2 1555 1555 2.16 LINK NE2 HIS B 77 FE HEM B 300 1555 1555 2.10 LINK N PRO C 2 FE HEM D 300 1555 1555 2.29 LINK NE2 HIS C 77 FE HEM C 300 1555 1555 2.12 LINK FE HEM C 300 N PRO D 2 1555 1555 2.35 LINK NE2 HIS D 77 FE HEM D 300 1555 1555 2.10 SITE 1 AC1 13 PHE A 74 CYS A 75 HIS A 77 SER A 78 SITE 2 AC1 13 ILE A 95 PHE A 98 GLU A 99 LEU A 112 SITE 3 AC1 13 LEU A 116 PRO B 2 PRO B 3 THR B 121 SITE 4 AC1 13 MET B 124 SITE 1 AC2 11 PRO A 2 PRO A 3 THR A 121 ARG A 125 SITE 2 AC2 11 PHE B 74 CYS B 75 HIS B 77 ILE B 95 SITE 3 AC2 11 PHE B 98 GLU B 99 LEU B 112 SITE 1 AC3 12 CYS C 75 HIS C 77 SER C 78 ILE C 95 SITE 2 AC3 12 PHE C 98 GLU C 99 LEU C 112 PRO D 2 SITE 3 AC3 12 PRO D 3 ARG D 4 THR D 121 MET D 124 SITE 1 AC4 9 PRO C 2 PRO C 3 THR C 121 PHE D 74 SITE 2 AC4 9 CYS D 75 HIS D 77 SER D 78 ILE D 95 SITE 3 AC4 9 LEU D 112 CRYST1 71.230 71.230 143.733 90.00 90.00 90.00 P 41 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014039 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014039 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006957 0.00000