HEADER METAL BINDING PROTEIN 18-APR-13 4K8G TITLE CRYSTAL STRUCTURE OF D-MANNONATE DEHYDRATASE FROM NOVOSPHINGOBIUM TITLE 2 AROMATICIVORANS MUTANT (V161A, R163A, K165G, L166A, Y167G, Y168A, TITLE 3 E169G) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANDELATE RACEMASE/MUCONATE LACTONIZING ENZYME, N-TERMINAL COMPND 3 DOMAIN PROTEIN; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOVOSPHINGOBIUM AROMATICIVORANS; SOURCE 3 ORGANISM_TAXID: 279238; SOURCE 4 STRAIN: DSM 12444; SOURCE 5 GENE: SARO_3675; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS TIM BARREL, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.LUKK,D.WICHELECKI,J.A.GERLT,S.K.NAIR REVDAT 2 28-FEB-24 4K8G 1 REMARK SEQADV LINK REVDAT 1 22-MAY-13 4K8G 0 JRNL AUTH D.WICHELECKI,T.LUKK,S.K.NAIR,J.A.GERLT JRNL TITL CRYSTAL STRUCTURE OF D-MANNONATE DEHYDRATASE FROM JRNL TITL 2 NOVOSPHINGOBIUM AROMATICIVORANS MUTANT (V161A, R163A, K165G, JRNL TITL 3 L166A, Y167G, Y168A, E169G) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 131191 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.141 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.148 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6560 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.9436 - 3.8813 1.00 4445 234 0.1456 0.1358 REMARK 3 2 3.8813 - 3.0817 1.00 4264 225 0.1372 0.1389 REMARK 3 3 3.0817 - 2.6924 1.00 4231 222 0.1448 0.1426 REMARK 3 4 2.6924 - 2.4464 1.00 4191 221 0.1424 0.1436 REMARK 3 5 2.4464 - 2.2711 1.00 4214 222 0.1397 0.1508 REMARK 3 6 2.2711 - 2.1372 1.00 4149 218 0.1314 0.1512 REMARK 3 7 2.1372 - 2.0302 1.00 4170 220 0.1363 0.1389 REMARK 3 8 2.0302 - 1.9419 1.00 4170 219 0.1339 0.1546 REMARK 3 9 1.9419 - 1.8671 1.00 4167 220 0.1347 0.1586 REMARK 3 10 1.8671 - 1.8027 1.00 4159 218 0.1330 0.1431 REMARK 3 11 1.8027 - 1.7463 1.00 4133 218 0.1326 0.1475 REMARK 3 12 1.7463 - 1.6964 1.00 4144 218 0.1320 0.1391 REMARK 3 13 1.6964 - 1.6518 1.00 4155 219 0.1275 0.1432 REMARK 3 14 1.6518 - 1.6115 1.00 4136 217 0.1289 0.1449 REMARK 3 15 1.6115 - 1.5748 1.00 4110 217 0.1290 0.1467 REMARK 3 16 1.5748 - 1.5413 1.00 4149 218 0.1318 0.1479 REMARK 3 17 1.5413 - 1.5105 1.00 4120 217 0.1308 0.1484 REMARK 3 18 1.5105 - 1.4820 1.00 4127 217 0.1336 0.1341 REMARK 3 19 1.4820 - 1.4555 1.00 4145 218 0.1371 0.1558 REMARK 3 20 1.4555 - 1.4309 1.00 4099 216 0.1410 0.1452 REMARK 3 21 1.4309 - 1.4078 1.00 4129 217 0.1475 0.1614 REMARK 3 22 1.4078 - 1.3861 1.00 4124 218 0.1488 0.1582 REMARK 3 23 1.3861 - 1.3657 1.00 4104 216 0.1566 0.1639 REMARK 3 24 1.3657 - 1.3465 1.00 4104 216 0.1557 0.1598 REMARK 3 25 1.3465 - 1.3283 1.00 4130 217 0.1603 0.1724 REMARK 3 26 1.3283 - 1.3110 1.00 4121 217 0.1621 0.1678 REMARK 3 27 1.3110 - 1.2947 1.00 4095 216 0.1681 0.1713 REMARK 3 28 1.2947 - 1.2791 1.00 4131 217 0.1771 0.2041 REMARK 3 29 1.2791 - 1.2642 1.00 4098 216 0.1821 0.1796 REMARK 3 30 1.2642 - 1.2500 1.00 4117 216 0.1861 0.1965 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.080 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 12.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3281 REMARK 3 ANGLE : 1.138 4479 REMARK 3 CHIRALITY : 0.076 477 REMARK 3 PLANARITY : 0.006 585 REMARK 3 DIHEDRAL : 13.550 1192 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 147.9421 169.5587 122.4662 REMARK 3 T TENSOR REMARK 3 T11: 0.1283 T22: 0.0944 REMARK 3 T33: 0.1114 T12: -0.0235 REMARK 3 T13: -0.0139 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.3542 L22: 0.1922 REMARK 3 L33: 0.2112 L12: 0.1070 REMARK 3 L13: -0.1295 L23: 0.1277 REMARK 3 S TENSOR REMARK 3 S11: -0.0249 S12: 0.0519 S13: 0.1055 REMARK 3 S21: -0.0135 S22: 0.0184 S23: -0.0118 REMARK 3 S31: -0.1642 S32: 0.0146 S33: 0.0502 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): 140.3135 161.8566 121.8701 REMARK 3 T TENSOR REMARK 3 T11: 0.0938 T22: 0.0631 REMARK 3 T33: 0.0847 T12: -0.0148 REMARK 3 T13: -0.0153 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.1750 L22: 0.1529 REMARK 3 L33: 0.2955 L12: -0.0090 REMARK 3 L13: -0.0323 L23: 0.0255 REMARK 3 S TENSOR REMARK 3 S11: -0.0019 S12: 0.0070 S13: 0.0378 REMARK 3 S21: -0.0125 S22: -0.0026 S23: -0.0103 REMARK 3 S31: -0.0596 S32: 0.0128 S33: 0.0039 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 128 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): 143.1527 150.0026 151.4214 REMARK 3 T TENSOR REMARK 3 T11: 0.1253 T22: 0.1227 REMARK 3 T33: 0.1150 T12: -0.0110 REMARK 3 T13: -0.0299 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 0.6753 L22: 0.1554 REMARK 3 L33: 0.8748 L12: 0.2486 REMARK 3 L13: -0.5233 L23: -0.0346 REMARK 3 S TENSOR REMARK 3 S11: 0.0189 S12: -0.0833 S13: -0.0055 REMARK 3 S21: 0.0284 S22: -0.0258 S23: -0.0743 REMARK 3 S31: -0.0487 S32: 0.1330 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 178 THROUGH 275 ) REMARK 3 ORIGIN FOR THE GROUP (A): 137.0833 139.2639 140.7904 REMARK 3 T TENSOR REMARK 3 T11: 0.0692 T22: 0.0627 REMARK 3 T33: 0.0634 T12: -0.0051 REMARK 3 T13: -0.0091 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.3276 L22: 0.3036 REMARK 3 L33: 0.3354 L12: -0.0221 REMARK 3 L13: -0.0015 L23: -0.0468 REMARK 3 S TENSOR REMARK 3 S11: -0.0058 S12: -0.0433 S13: 0.0068 REMARK 3 S21: 0.0430 S22: -0.0089 S23: -0.0161 REMARK 3 S31: -0.0028 S32: 0.0233 S33: 0.0168 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 276 THROUGH 375 ) REMARK 3 ORIGIN FOR THE GROUP (A): 134.1526 159.0959 132.6575 REMARK 3 T TENSOR REMARK 3 T11: 0.0851 T22: 0.0683 REMARK 3 T33: 0.0693 T12: -0.0032 REMARK 3 T13: -0.0163 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.4282 L22: 0.7988 REMARK 3 L33: 0.1958 L12: 0.3340 REMARK 3 L13: -0.0524 L23: 0.0168 REMARK 3 S TENSOR REMARK 3 S11: 0.0057 S12: -0.0482 S13: 0.0659 REMARK 3 S21: 0.0305 S22: -0.0172 S23: 0.0181 REMARK 3 S31: -0.0697 S32: 0.0195 S33: 0.0110 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 376 THROUGH 402 ) REMARK 3 ORIGIN FOR THE GROUP (A): 155.9945 152.4615 135.8206 REMARK 3 T TENSOR REMARK 3 T11: 0.1067 T22: 0.1096 REMARK 3 T33: 0.0884 T12: -0.0262 REMARK 3 T13: -0.0162 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.2108 L22: 2.0848 REMARK 3 L33: 0.2368 L12: -0.1398 REMARK 3 L13: -0.0071 L23: -0.2464 REMARK 3 S TENSOR REMARK 3 S11: -0.0194 S12: -0.0518 S13: 0.0376 REMARK 3 S21: 0.0712 S22: 0.0225 S23: -0.0667 REMARK 3 S31: -0.0599 S32: 0.0522 S33: 0.0060 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4K8G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000079022. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-325 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 131204 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 29.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.76600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.840 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MOTHER LIQUEUR CONTAINED 28% PEG 400, REMARK 280 100 MM HEPES, NAOH, 200 MM CALCIUM CHLORIDE. PROTEIN SOLUTION REMARK 280 WAS AT 20 MG/ML, 100 MM NACL, 50 MM TRIS, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 62.88500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 62.88500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 59.87000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 62.88500 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 62.88500 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 59.87000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 62.88500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 62.88500 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 59.87000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 62.88500 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 62.88500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 59.87000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 62.88500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 62.88500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 59.87000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 62.88500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 62.88500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 59.87000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 62.88500 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 62.88500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 59.87000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 62.88500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 62.88500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 59.87000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 50940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 80280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -197.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 251.54000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 251.54000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 251.54000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 251.54000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 251.54000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 239.48000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 251.54000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 239.48000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 239.48000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 251.54000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 251.54000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 239.48000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 610 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 682 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 730 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 816 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 888 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1044 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1086 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 ASP A 157 REMARK 465 ALA A 158 REMARK 465 TYR A 159 REMARK 465 GLY A 160 REMARK 465 ALA A 161 REMARK 465 GLY A 162 REMARK 465 ALA A 163 REMARK 465 GLY A 164 REMARK 465 GLY A 165 REMARK 465 ALA A 166 REMARK 465 GLY A 167 REMARK 465 ALA A 168 REMARK 465 GLY A 169 REMARK 465 PRO A 170 REMARK 465 ALA A 171 REMARK 465 ASP A 172 REMARK 465 ALA A 173 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 300 O HOH A 844 2.10 REMARK 500 NH1 ARG A 296 O HOH A 1134 2.11 REMARK 500 O HOH A 1003 O HOH A 1020 2.16 REMARK 500 ND1 HIS A 205 O HOH A 786 2.18 REMARK 500 O HOH A 957 O HOH A 979 2.18 REMARK 500 NH1 ARG A 147 O HOH A 1036 2.19 REMARK 500 OD2 ASP A 115 O HOH A 1065 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 783 O HOH A 783 7557 1.86 REMARK 500 O HOH A 906 O HOH A 924 3755 2.17 REMARK 500 O HOH A 893 O HOH A 1022 7557 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 50 -61.07 -127.35 REMARK 500 HIS A 50 -61.07 -127.35 REMARK 500 TYR A 75 -55.82 75.41 REMARK 500 ARG A 78 -176.43 71.13 REMARK 500 ASP A 115 -81.74 -89.33 REMARK 500 ASP A 115 -80.80 -88.26 REMARK 500 ASN A 334 41.70 -91.91 REMARK 500 ASP A 354 70.16 -110.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 210 OD2 REMARK 620 2 GLU A 236 OE1 85.9 REMARK 620 3 GLU A 262 OE1 162.4 78.8 REMARK 620 4 GLU A 262 OE2 147.2 125.3 46.6 REMARK 620 5 HOH A 666 O 81.9 97.8 91.6 83.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QJJ RELATED DB: PDB DBREF 4K8G A 1 402 UNP A4XF23 A4XF23_NOVAD 1 402 SEQADV 4K8G MET A -19 UNP A4XF23 INITIATING METHIONINE SEQADV 4K8G GLY A -18 UNP A4XF23 EXPRESSION TAG SEQADV 4K8G SER A -17 UNP A4XF23 EXPRESSION TAG SEQADV 4K8G SER A -16 UNP A4XF23 EXPRESSION TAG SEQADV 4K8G HIS A -15 UNP A4XF23 EXPRESSION TAG SEQADV 4K8G HIS A -14 UNP A4XF23 EXPRESSION TAG SEQADV 4K8G HIS A -13 UNP A4XF23 EXPRESSION TAG SEQADV 4K8G HIS A -12 UNP A4XF23 EXPRESSION TAG SEQADV 4K8G HIS A -11 UNP A4XF23 EXPRESSION TAG SEQADV 4K8G HIS A -10 UNP A4XF23 EXPRESSION TAG SEQADV 4K8G SER A -9 UNP A4XF23 EXPRESSION TAG SEQADV 4K8G SER A -8 UNP A4XF23 EXPRESSION TAG SEQADV 4K8G GLY A -7 UNP A4XF23 EXPRESSION TAG SEQADV 4K8G LEU A -6 UNP A4XF23 EXPRESSION TAG SEQADV 4K8G VAL A -5 UNP A4XF23 EXPRESSION TAG SEQADV 4K8G PRO A -4 UNP A4XF23 EXPRESSION TAG SEQADV 4K8G ARG A -3 UNP A4XF23 EXPRESSION TAG SEQADV 4K8G GLY A -2 UNP A4XF23 EXPRESSION TAG SEQADV 4K8G SER A -1 UNP A4XF23 EXPRESSION TAG SEQADV 4K8G HIS A 0 UNP A4XF23 EXPRESSION TAG SEQADV 4K8G ALA A 161 UNP A4XF23 VAL 161 ENGINEERED MUTATION SEQADV 4K8G ALA A 163 UNP A4XF23 ARG 163 ENGINEERED MUTATION SEQADV 4K8G GLY A 165 UNP A4XF23 LYS 165 ENGINEERED MUTATION SEQADV 4K8G ALA A 166 UNP A4XF23 LEU 166 ENGINEERED MUTATION SEQADV 4K8G GLY A 167 UNP A4XF23 TYR 167 ENGINEERED MUTATION SEQADV 4K8G ALA A 168 UNP A4XF23 TYR 168 ENGINEERED MUTATION SEQADV 4K8G GLY A 169 UNP A4XF23 GLU 169 ENGINEERED MUTATION SEQRES 1 A 422 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 422 LEU VAL PRO ARG GLY SER HIS MET LYS ILE THR ALA ALA SEQRES 3 A 422 ARG VAL ILE ILE THR CYS PRO GLY ARG ASN PHE VAL THR SEQRES 4 A 422 LEU LYS ILE GLU THR ASP GLN GLY VAL TYR GLY ILE GLY SEQRES 5 A 422 ASP ALA THR LEU ASN GLY ARG GLU LEU SER VAL VAL ALA SEQRES 6 A 422 TYR LEU GLN GLU HIS VAL ALA PRO CYS LEU ILE GLY MET SEQRES 7 A 422 ASP PRO ARG ARG ILE GLU ASP ILE TRP GLN TYR VAL TYR SEQRES 8 A 422 ARG GLY ALA TYR TRP ARG ARG GLY PRO VAL THR MET ARG SEQRES 9 A 422 ALA ILE ALA ALA VAL ASP MET ALA LEU TRP ASP ILE LYS SEQRES 10 A 422 ALA LYS MET ALA GLY MET PRO LEU TYR GLN LEU LEU GLY SEQRES 11 A 422 GLY ARG SER ARG ASP GLY ILE MET VAL TYR GLY HIS ALA SEQRES 12 A 422 ASN GLY SER ASP ILE ALA GLU THR VAL GLU ALA VAL GLY SEQRES 13 A 422 HIS TYR ILE ASP MET GLY TYR LYS ALA ILE ARG ALA GLN SEQRES 14 A 422 THR GLY VAL PRO GLY ILE LYS ASP ALA TYR GLY ALA GLY SEQRES 15 A 422 ALA GLY GLY ALA GLY ALA GLY PRO ALA ASP ALA SER LEU SEQRES 16 A 422 PRO SER VAL THR GLY TRP ASP THR ARG LYS ALA LEU ASN SEQRES 17 A 422 TYR VAL PRO LYS LEU PHE GLU GLU LEU ARG LYS THR TYR SEQRES 18 A 422 GLY PHE ASP HIS HIS LEU LEU HIS ASP GLY HIS HIS ARG SEQRES 19 A 422 TYR THR PRO GLN GLU ALA ALA ASN LEU GLY LYS MET LEU SEQRES 20 A 422 GLU PRO TYR GLN LEU PHE TRP LEU GLU ASP CYS THR PRO SEQRES 21 A 422 ALA GLU ASN GLN GLU ALA PHE ARG LEU VAL ARG GLN HIS SEQRES 22 A 422 THR VAL THR PRO LEU ALA VAL GLY GLU ILE PHE ASN THR SEQRES 23 A 422 ILE TRP ASP ALA LYS ASP LEU ILE GLN ASN GLN LEU ILE SEQRES 24 A 422 ASP TYR ILE ARG ALA THR VAL VAL GLY ALA GLY GLY LEU SEQRES 25 A 422 THR HIS LEU ARG ARG ILE ALA ASP LEU ALA SER LEU TYR SEQRES 26 A 422 GLN VAL ARG THR GLY CYS HIS GLY ALA THR ASP LEU SER SEQRES 27 A 422 PRO VAL THR MET GLY CYS ALA LEU HIS PHE ASP THR TRP SEQRES 28 A 422 VAL PRO ASN PHE GLY ILE GLN GLU TYR MET ARG HIS THR SEQRES 29 A 422 GLU GLU THR ASP ALA VAL PHE PRO HIS ASP TYR TRP PHE SEQRES 30 A 422 GLU LYS GLY GLU LEU PHE VAL GLY GLU THR PRO GLY HIS SEQRES 31 A 422 GLY VAL ASP ILE ASP GLU GLU LEU ALA ALA LYS TYR PRO SEQRES 32 A 422 TYR LYS PRO ALA TYR LEU PRO VAL ALA ARG LEU GLU ASP SEQRES 33 A 422 GLY THR MET TRP ASN TRP HET GOL A 501 6 HET MG A 502 1 HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 MG MG 2+ FORMUL 4 HOH *534(H2 O) HELIX 1 1 ARG A 39 HIS A 50 1 12 HELIX 2 2 HIS A 50 ILE A 56 1 7 HELIX 3 3 ARG A 62 ALA A 74 1 13 HELIX 4 4 GLY A 79 GLY A 102 1 24 HELIX 5 5 PRO A 104 GLY A 110 1 7 HELIX 6 6 ASP A 127 MET A 141 1 15 HELIX 7 7 ASP A 182 ASN A 188 1 7 HELIX 8 8 TYR A 189 GLY A 202 1 14 HELIX 9 9 THR A 216 GLU A 228 1 13 HELIX 10 10 PRO A 229 GLN A 231 5 3 HELIX 11 11 ASN A 243 ALA A 246 5 4 HELIX 12 12 PHE A 247 THR A 254 1 8 HELIX 13 13 THR A 266 ASP A 269 5 4 HELIX 14 14 ALA A 270 ASN A 276 1 7 HELIX 15 15 GLY A 290 TYR A 305 1 16 HELIX 16 16 SER A 318 VAL A 332 1 15 HELIX 17 17 THR A 344 PHE A 351 1 8 HELIX 18 18 ASP A 375 ALA A 380 1 6 SHEET 1 A 3 ILE A 3 THR A 11 0 SHEET 2 A 3 PHE A 17 THR A 24 -1 O THR A 19 N ILE A 9 SHEET 3 A 3 TYR A 29 ASP A 33 -1 O GLY A 32 N LEU A 20 SHEET 1 B 8 ARG A 308 THR A 309 0 SHEET 2 B 8 TYR A 281 ILE A 282 1 N ILE A 282 O ARG A 308 SHEET 3 B 8 LEU A 258 VAL A 260 1 O LEU A 258 N TYR A 281 SHEET 4 B 8 TRP A 234 GLU A 236 1 N LEU A 235 O ALA A 259 SHEET 5 B 8 HIS A 206 ASP A 210 1 N HIS A 209 O GLU A 236 SHEET 6 B 8 ALA A 145 THR A 150 1 N ALA A 148 O LEU A 208 SHEET 7 B 8 ILE A 117 GLY A 125 1 N GLY A 121 O ARG A 147 SHEET 8 B 8 GLN A 338 GLU A 339 1 O GLN A 338 N MET A 118 SHEET 1 C 9 ARG A 308 THR A 309 0 SHEET 2 C 9 TYR A 281 ILE A 282 1 N ILE A 282 O ARG A 308 SHEET 3 C 9 LEU A 258 VAL A 260 1 O LEU A 258 N TYR A 281 SHEET 4 C 9 TRP A 234 GLU A 236 1 N LEU A 235 O ALA A 259 SHEET 5 C 9 HIS A 206 ASP A 210 1 N HIS A 209 O GLU A 236 SHEET 6 C 9 ALA A 145 THR A 150 1 N ALA A 148 O LEU A 208 SHEET 7 C 9 ILE A 117 GLY A 125 1 N GLY A 121 O ARG A 147 SHEET 8 C 9 GLU A 361 VAL A 364 -1 O LEU A 362 N ILE A 117 SHEET 9 C 9 TYR A 355 GLU A 358 -1 N GLU A 358 O GLU A 361 SHEET 1 D 2 VAL A 178 TRP A 181 0 SHEET 2 D 2 VAL A 391 LEU A 394 1 O VAL A 391 N THR A 179 LINK OD2 ASP A 210 MG MG A 502 1555 1555 2.37 LINK OE1 GLU A 236 MG MG A 502 1555 1555 2.31 LINK OE1 GLU A 262 MG MG A 502 1555 1555 2.37 LINK OE2 GLU A 262 MG MG A 502 1555 1555 2.99 LINK MG MG A 502 O HOH A 666 1555 1555 2.19 SITE 1 AC1 9 ASN A 37 TRP A 76 GLU A 262 HIS A 312 SITE 2 AC1 9 ALA A 314 ASP A 316 LEU A 389 TRP A 402 SITE 3 AC1 9 HOH A 889 SITE 1 AC2 5 ASP A 210 GLU A 236 GLU A 262 HOH A 666 SITE 2 AC2 5 HOH A1036 CRYST1 125.770 125.770 119.740 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007951 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007951 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008351 0.00000