HEADER OXIDOREDUCTASE 18-APR-13 4K8H TITLE OYE1-W116V COMPLEXED WITH (R)-CARVONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADPH DEHYDROGENASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: OLD YELLOW ENZYME 1; COMPND 5 EC: 1.6.99.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES PASTORIANUS; SOURCE 3 ORGANISM_COMMON: LAGER YEAST; SOURCE 4 ORGANISM_TAXID: 27292; SOURCE 5 GENE: OYE1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3B KEYWDS OLD YELLOW ENZYME, CARVONE, OXIDOREDUCTASE, TIM-BARREL, NADPH KEYWDS 2 DEHYDROGENASE 1 EXPDTA X-RAY DIFFRACTION AUTHOR B.SULLIVAN,Y.A.POMPEU,J.D.STEWART REVDAT 2 28-FEB-24 4K8H 1 REMARK SEQADV LINK REVDAT 1 09-OCT-13 4K8H 0 JRNL AUTH Y.A.POMPEU,B.SULLIVAN,J.D.STEWART JRNL TITL X‑RAY CRYSTALLOGRAPHY REVEALS HOW SUBTLE CHANGES JRNL TITL 2 CONTROL THE ORIENTATION OF SUBSTRATE BINDING IN AN ALKENE JRNL TITL 3 REDUCTASE JRNL REF ACS CATALYSIS V. 3 2376 2013 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/CS400622E REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 63553 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.128 REMARK 3 R VALUE (WORKING SET) : 0.125 REMARK 3 FREE R VALUE : 0.162 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6107 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.4862 - 4.8112 1.00 2100 234 0.1753 0.1826 REMARK 3 2 4.8112 - 3.8203 1.00 1992 221 0.1286 0.1482 REMARK 3 3 3.8203 - 3.3378 1.00 1962 218 0.1403 0.1522 REMARK 3 4 3.3378 - 3.0328 1.00 1941 216 0.1418 0.1713 REMARK 3 5 3.0328 - 2.8155 1.00 1943 216 0.1339 0.1369 REMARK 3 6 2.8155 - 2.6496 1.00 1914 212 0.1213 0.1442 REMARK 3 7 2.6496 - 2.5169 1.00 1915 213 0.1096 0.1495 REMARK 3 8 2.5169 - 2.4074 1.00 1922 214 0.1090 0.1431 REMARK 3 9 2.4074 - 2.3147 1.00 1919 214 0.1062 0.1683 REMARK 3 10 2.3147 - 2.2348 0.99 1877 207 0.1246 0.1736 REMARK 3 11 2.2348 - 2.1650 1.00 1909 213 0.1148 0.1452 REMARK 3 12 2.1650 - 2.1031 1.00 1905 212 0.1089 0.1471 REMARK 3 13 2.1031 - 2.0477 1.00 1872 208 0.1094 0.1537 REMARK 3 14 2.0477 - 1.9978 1.00 1907 212 0.1079 0.1578 REMARK 3 15 1.9978 - 1.9524 1.00 1893 210 0.1155 0.1608 REMARK 3 16 1.9524 - 1.9108 1.00 1904 212 0.1336 0.1964 REMARK 3 17 1.9108 - 1.8726 1.00 1861 207 0.1313 0.2118 REMARK 3 18 1.8726 - 1.8373 1.00 1906 212 0.1184 0.1615 REMARK 3 19 1.8373 - 1.8045 1.00 1891 210 0.1001 0.1673 REMARK 3 20 1.8045 - 1.7739 1.00 1883 209 0.0993 0.1691 REMARK 3 21 1.7739 - 1.7453 1.00 1890 210 0.0996 0.1636 REMARK 3 22 1.7453 - 1.7184 1.00 1866 208 0.0965 0.1780 REMARK 3 23 1.7184 - 1.6931 1.00 1909 211 0.0967 0.1696 REMARK 3 24 1.6931 - 1.6693 1.00 1870 208 0.0985 0.1506 REMARK 3 25 1.6693 - 1.6467 1.00 1838 205 0.0974 0.1666 REMARK 3 26 1.6467 - 1.6253 1.00 1911 213 0.1050 0.1844 REMARK 3 27 1.6253 - 1.6050 1.00 1873 208 0.1102 0.1767 REMARK 3 28 1.6050 - 1.5857 1.00 1855 205 0.1161 0.1900 REMARK 3 29 1.5857 - 1.5673 1.00 1914 213 0.1266 0.2221 REMARK 3 30 1.5673 - 1.5500 0.99 1854 206 0.1427 0.2141 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3388 REMARK 3 ANGLE : 1.205 4599 REMARK 3 CHIRALITY : 0.077 475 REMARK 3 PLANARITY : 0.006 600 REMARK 3 DIHEDRAL : 14.175 1279 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4K8H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000079023. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.88560 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63649 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 35.486 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 36.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.20 REMARK 200 R MERGE FOR SHELL (I) : 0.67600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 0.1M HEPES, 30-40% PEG400, REMARK 280 PH 8.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.42550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 70.72150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 70.72150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.13825 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 70.72150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 70.72150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 10.71275 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 70.72150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.72150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.13825 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 70.72150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.72150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 10.71275 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 21.42550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 902 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 993 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1026 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 382 -59.51 -131.48 REMARK 500 LYS A 398 26.46 -144.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 1PE A 408 OH4 REMARK 620 2 1PE A 408 OH6 108.2 REMARK 620 3 1PE A 408 OH5 52.7 57.2 REMARK 620 4 HOH A 824 O 69.5 133.4 96.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 406 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PGE A 407 O2 REMARK 620 2 PGE A 407 O4 108.9 REMARK 620 3 PGE A 407 O1 57.3 132.9 REMARK 620 4 PGE A 407 O3 57.1 54.1 106.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 07V A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 408 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GE8 RELATED DB: PDB REMARK 900 OYE1-W116I COMPLEXED WITH (S)-CARVONE REMARK 900 RELATED ID: 4GXM RELATED DB: PDB REMARK 900 OYE1-W116L COMPLEXED WITH THE AROMATIC PRODUCT OF (R)-CARVONE REMARK 900 DISMUTATION REMARK 900 RELATED ID: 4GWE RELATED DB: PDB REMARK 900 OYE1-W116L COMPLEXED WITH (R)-CARVONE REMARK 900 RELATED ID: 4H4I RELATED DB: PDB REMARK 900 OYE1-W116V COMPLEXED WITH THE AROMATIC PRODUCT OF (S)-CARVONE REMARK 900 DISMUTATION REMARK 900 RELATED ID: 4GBU RELATED DB: PDB REMARK 900 OYE1-W116A COMPLEXED WITH THE AROMATIC PRODUCT OF (S)-CARVONE REMARK 900 DISMUTATION REMARK 900 RELATED ID: 4H6K RELATED DB: PDB REMARK 900 OYE1-W116I REMARK 900 RELATED ID: 3TXZ RELATED DB: PDB REMARK 900 OYE1-W116Q COMPLEXED WITH (R)-CARVONE REMARK 900 RELATED ID: 4K7V RELATED DB: PDB REMARK 900 OYE1-W116A COMPLEXED WITH (R)-CARVONE REMARK 900 RELATED ID: 4K7Y RELATED DB: PDB REMARK 900 OYE1-W116T REMARK 900 RELATED ID: 4K8E RELATED DB: PDB REMARK 900 OYE1-W116V COMPLEXED WITH THE AROMATIC PRODUCT OF (R)-CARVONE REMARK 900 DISMUTATION REMARK 900 RELATED ID: 3RND RELATED DB: PDB REMARK 900 RELATED ID: 3TX9 RELATED DB: PDB DBREF 4K8H A 0 399 UNP Q02899 OYE1_SACPS 1 400 SEQADV 4K8H VAL A 116 UNP Q02899 TRP 117 ENGINEERED MUTATION SEQRES 1 A 400 MET SER PHE VAL LYS ASP PHE LYS PRO GLN ALA LEU GLY SEQRES 2 A 400 ASP THR ASN LEU PHE LYS PRO ILE LYS ILE GLY ASN ASN SEQRES 3 A 400 GLU LEU LEU HIS ARG ALA VAL ILE PRO PRO LEU THR ARG SEQRES 4 A 400 MET ARG ALA LEU HIS PRO GLY ASN ILE PRO ASN ARG ASP SEQRES 5 A 400 TRP ALA VAL GLU TYR TYR THR GLN ARG ALA GLN ARG PRO SEQRES 6 A 400 GLY THR MET ILE ILE THR GLU GLY ALA PHE ILE SER PRO SEQRES 7 A 400 GLN ALA GLY GLY TYR ASP ASN ALA PRO GLY VAL TRP SER SEQRES 8 A 400 GLU GLU GLN MET VAL GLU TRP THR LYS ILE PHE ASN ALA SEQRES 9 A 400 ILE HIS GLU LYS LYS SER PHE VAL TRP VAL GLN LEU VAL SEQRES 10 A 400 VAL LEU GLY TRP ALA ALA PHE PRO ASP ASN LEU ALA ARG SEQRES 11 A 400 ASP GLY LEU ARG TYR ASP SER ALA SER ASP ASN VAL PHE SEQRES 12 A 400 MET ASP ALA GLU GLN GLU ALA LYS ALA LYS LYS ALA ASN SEQRES 13 A 400 ASN PRO GLN HIS SER LEU THR LYS ASP GLU ILE LYS GLN SEQRES 14 A 400 TYR ILE LYS GLU TYR VAL GLN ALA ALA LYS ASN SER ILE SEQRES 15 A 400 ALA ALA GLY ALA ASP GLY VAL GLU ILE HIS SER ALA ASN SEQRES 16 A 400 GLY TYR LEU LEU ASN GLN PHE LEU ASP PRO HIS SER ASN SEQRES 17 A 400 THR ARG THR ASP GLU TYR GLY GLY SER ILE GLU ASN ARG SEQRES 18 A 400 ALA ARG PHE THR LEU GLU VAL VAL ASP ALA LEU VAL GLU SEQRES 19 A 400 ALA ILE GLY HIS GLU LYS VAL GLY LEU ARG LEU SER PRO SEQRES 20 A 400 TYR GLY VAL PHE ASN SER MET SER GLY GLY ALA GLU THR SEQRES 21 A 400 GLY ILE VAL ALA GLN TYR ALA TYR VAL ALA GLY GLU LEU SEQRES 22 A 400 GLU LYS ARG ALA LYS ALA GLY LYS ARG LEU ALA PHE VAL SEQRES 23 A 400 HIS LEU VAL GLU PRO ARG VAL THR ASN PRO PHE LEU THR SEQRES 24 A 400 GLU GLY GLU GLY GLU TYR GLU GLY GLY SER ASN ASP PHE SEQRES 25 A 400 VAL TYR SER ILE TRP LYS GLY PRO VAL ILE ARG ALA GLY SEQRES 26 A 400 ASN PHE ALA LEU HIS PRO GLU VAL VAL ARG GLU GLU VAL SEQRES 27 A 400 LYS ASP LYS ARG THR LEU ILE GLY TYR GLY ARG PHE PHE SEQRES 28 A 400 ILE SER ASN PRO ASP LEU VAL ASP ARG LEU GLU LYS GLY SEQRES 29 A 400 LEU PRO LEU ASN LYS TYR ASP ARG ASP THR PHE TYR GLN SEQRES 30 A 400 MET SER ALA HIS GLY TYR ILE ASP TYR PRO THR TYR GLU SEQRES 31 A 400 GLU ALA LEU LYS LEU GLY TRP ASP LYS LYS HET FMN A 401 50 HET CL A 402 1 HET CL A 403 1 HET 07V A 404 25 HET NA A 405 1 HET NA A 406 1 HET PGE A 407 10 HET 1PE A 408 16 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM CL CHLORIDE ION HETNAM 07V (5R)-2-METHYL-5-(PROP-1-EN-2-YL)CYCLOHEX-2-EN-1-ONE HETNAM NA SODIUM ION HETNAM PGE TRIETHYLENE GLYCOL HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN 07V R-CARVONE HETSYN 1PE PEG400 FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 CL 2(CL 1-) FORMUL 5 07V C10 H14 O FORMUL 6 NA 2(NA 1+) FORMUL 8 PGE C6 H14 O4 FORMUL 9 1PE C10 H22 O6 FORMUL 10 HOH *542(H2 O) HELIX 1 1 THR A 14 LYS A 18 5 5 HELIX 2 2 TRP A 52 ALA A 61 1 10 HELIX 3 3 SER A 90 LYS A 107 1 18 HELIX 4 4 LEU A 118 ALA A 122 5 5 HELIX 5 5 PHE A 123 ASP A 130 1 8 HELIX 6 6 ASP A 144 ALA A 154 1 11 HELIX 7 7 THR A 162 ALA A 183 1 22 HELIX 8 8 TYR A 196 ASP A 203 1 8 HELIX 9 9 SER A 216 ALA A 221 1 6 HELIX 10 10 ALA A 221 GLY A 236 1 16 HELIX 11 11 VAL A 249 MET A 253 5 5 HELIX 12 12 SER A 254 GLU A 258 5 5 HELIX 13 13 GLY A 260 ALA A 278 1 19 HELIX 14 14 ASP A 310 TRP A 316 1 7 HELIX 15 15 HIS A 329 VAL A 337 1 9 HELIX 16 16 GLY A 347 ASN A 353 1 7 HELIX 17 17 ASP A 355 GLY A 363 1 9 HELIX 18 18 ASP A 370 PHE A 374 5 5 HELIX 19 19 THR A 387 LEU A 394 1 8 HELIX 20 20 GLY A 395 LYS A 399 5 5 SHEET 1 A 2 ILE A 20 ILE A 22 0 SHEET 2 A 2 ASN A 25 LEU A 27 -1 O ASN A 25 N ILE A 22 SHEET 1 B 8 ALA A 31 VAL A 32 0 SHEET 2 B 8 THR A 342 GLY A 345 1 O ILE A 344 N VAL A 32 SHEET 3 B 8 VAL A 320 ALA A 323 1 N VAL A 320 O LEU A 343 SHEET 4 B 8 PHE A 284 VAL A 288 1 N LEU A 287 O ILE A 321 SHEET 5 B 8 VAL A 240 LEU A 244 1 N LEU A 242 O HIS A 286 SHEET 6 B 8 GLY A 187 HIS A 191 1 N ILE A 190 O GLY A 241 SHEET 7 B 8 PHE A 110 VAL A 116 1 N LEU A 115 O GLU A 189 SHEET 8 B 8 MET A 67 ILE A 69 1 N ILE A 68 O TRP A 112 SHEET 1 C 8 ALA A 31 VAL A 32 0 SHEET 2 C 8 THR A 342 GLY A 345 1 O ILE A 344 N VAL A 32 SHEET 3 C 8 VAL A 320 ALA A 323 1 N VAL A 320 O LEU A 343 SHEET 4 C 8 PHE A 284 VAL A 288 1 N LEU A 287 O ILE A 321 SHEET 5 C 8 VAL A 240 LEU A 244 1 N LEU A 242 O HIS A 286 SHEET 6 C 8 GLY A 187 HIS A 191 1 N ILE A 190 O GLY A 241 SHEET 7 C 8 PHE A 110 VAL A 116 1 N LEU A 115 O GLU A 189 SHEET 8 C 8 ALA A 73 PHE A 74 1 N ALA A 73 O VAL A 116 SHEET 1 D 2 TYR A 134 SER A 136 0 SHEET 2 D 2 GLN A 158 SER A 160 1 O HIS A 159 N TYR A 134 LINK NA NA A 405 OH4 1PE A 408 1555 1555 2.80 LINK NA NA A 405 OH6 1PE A 408 1555 1555 2.91 LINK NA NA A 405 OH5 1PE A 408 1555 1555 3.12 LINK NA NA A 405 O HOH A 824 1555 1555 3.04 LINK NA NA A 406 O2 PGE A 407 1555 1555 2.72 LINK NA NA A 406 O4 PGE A 407 1555 1555 2.83 LINK NA NA A 406 O1 PGE A 407 1555 1555 2.96 LINK NA NA A 406 O3 PGE A 407 1555 1555 3.03 CISPEP 1 HIS A 43 PRO A 44 0 2.11 SITE 1 AC1 19 PRO A 34 PRO A 35 LEU A 36 THR A 37 SITE 2 AC1 19 GLY A 72 GLN A 114 HIS A 191 ASN A 194 SITE 3 AC1 19 ARG A 243 PRO A 295 GLY A 324 ASN A 325 SITE 4 AC1 19 GLY A 347 ARG A 348 07V A 404 HOH A 501 SITE 5 AC1 19 HOH A 502 HOH A 525 HOH A 860 SITE 1 AC2 2 ASP A 83 ASN A 126 SITE 1 AC3 7 THR A 37 TYR A 82 HIS A 191 ASN A 194 SITE 2 AC3 7 TYR A 196 TYR A 375 FMN A 401 SITE 1 AC4 3 TYR A 375 1PE A 408 HOH A 824 SITE 1 AC5 2 TRP A 52 PGE A 407 SITE 1 AC6 4 ASP A 51 ASP A 358 GLU A 389 NA A 406 SITE 1 AC7 5 PHE A 123 PHE A 296 TYR A 375 NA A 405 SITE 2 AC7 5 HOH A 715 CRYST1 141.443 141.443 42.851 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007070 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007070 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023337 0.00000