HEADER TRANSFERASE/DNA 19-APR-13 4K9A TITLE STRUCTURE OF TERNARY COMPLEX OF CGAS WITH DSDNA AND BOUND 5 -PG(2 ,5 TITLE 2 )PA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC GMP-AMP SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, UNP RESIDUES 147-507; COMPND 5 SYNONYM: CGAMP SYNTHASE, CGAS, M-CGAS, MAB-21 DOMAIN-CONTAINING COMPND 6 PROTEIN 1; COMPND 7 EC: 2.7.7.-; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA-F; COMPND 11 CHAIN: D; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA-R; COMPND 15 CHAIN: E; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MB21D1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 OTHER_DETAILS: THIS SEQUENCE WAS SYNTHESIZED BY REGULAR PROTOCOL; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: THIS SEQUENCE WAS SYNTHESIZED BY REGULAR PROTOCOL KEYWDS NUCLEOTIDYLTRANSFERASE FOLD, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.GAO,Y.WU,D.J.PATEL REVDAT 4 29-MAY-24 4K9A 1 COMPND REMARK HET HETNAM REVDAT 4 2 1 FORMUL LINK SITE ATOM REVDAT 3 28-FEB-24 4K9A 1 REMARK SEQADV LINK REVDAT 2 28-AUG-13 4K9A 1 JRNL REVDAT 1 15-MAY-13 4K9A 0 JRNL AUTH P.GAO,M.ASCANO,Y.WU,W.BARCHET,B.L.GAFFNEY,T.ZILLINGER, JRNL AUTH 2 A.A.SERGANOV,Y.LIU,R.A.JONES,G.HARTMANN,T.TUSCHL,D.J.PATEL JRNL TITL CYCLIC [G(2',5')PA(3',5')P] IS THE METAZOAN SECOND MESSENGER JRNL TITL 2 PRODUCED BY DNA-ACTIVATED CYCLIC GMP-AMP SYNTHASE. JRNL REF CELL(CAMBRIDGE,MASS.) V. 153 1094 2013 JRNL REFN ISSN 0092-8674 JRNL PMID 23647843 JRNL DOI 10.1016/J.CELL.2013.04.046 REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 78.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 25590 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.820 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 78.6013 - 5.4554 0.99 1811 154 0.1646 0.1877 REMARK 3 2 5.4554 - 4.3302 1.00 1764 149 0.1378 0.1832 REMARK 3 3 4.3302 - 3.7828 1.00 1729 146 0.1435 0.1782 REMARK 3 4 3.7828 - 3.4370 1.00 1713 146 0.1588 0.1783 REMARK 3 5 3.4370 - 3.1906 1.00 1710 145 0.1645 0.2319 REMARK 3 6 3.1906 - 3.0025 1.00 1724 146 0.1858 0.2289 REMARK 3 7 3.0025 - 2.8521 1.00 1688 144 0.1954 0.2500 REMARK 3 8 2.8521 - 2.7280 1.00 1692 142 0.1871 0.2586 REMARK 3 9 2.7280 - 2.6229 1.00 1711 146 0.1954 0.2297 REMARK 3 10 2.6229 - 2.5324 1.00 1702 144 0.1898 0.2375 REMARK 3 11 2.5324 - 2.4532 1.00 1683 143 0.1872 0.2656 REMARK 3 12 2.4532 - 2.3831 1.00 1687 143 0.1980 0.2209 REMARK 3 13 2.3831 - 2.3204 0.94 1601 135 0.2063 0.2585 REMARK 3 14 2.3204 - 2.2637 0.82 1375 117 0.2248 0.2585 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3709 REMARK 3 ANGLE : 1.433 5117 REMARK 3 CHIRALITY : 0.145 556 REMARK 3 PLANARITY : 0.002 539 REMARK 3 DIHEDRAL : 19.815 1464 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 149 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4313 -24.3975 -24.4190 REMARK 3 T TENSOR REMARK 3 T11: 0.1715 T22: 0.1780 REMARK 3 T33: 0.4068 T12: -0.0855 REMARK 3 T13: -0.0077 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 2.3079 L22: 2.3271 REMARK 3 L33: 6.6375 L12: -0.9049 REMARK 3 L13: 0.2312 L23: 0.3171 REMARK 3 S TENSOR REMARK 3 S11: 0.0830 S12: -0.0519 S13: -0.4403 REMARK 3 S21: 0.0103 S22: 0.0380 S23: -0.1339 REMARK 3 S31: 0.7327 S32: 0.6446 S33: -0.0013 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 210 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.2906 -15.0766 -33.2333 REMARK 3 T TENSOR REMARK 3 T11: 0.3800 T22: 0.1707 REMARK 3 T33: 0.3190 T12: -0.0014 REMARK 3 T13: 0.0402 T23: -0.0718 REMARK 3 L TENSOR REMARK 3 L11: 3.5940 L22: 4.0378 REMARK 3 L33: 3.8905 L12: -0.1905 REMARK 3 L13: 1.4049 L23: -3.5912 REMARK 3 S TENSOR REMARK 3 S11: 0.1176 S12: 0.3342 S13: -0.1262 REMARK 3 S21: -0.4880 S22: -0.0651 S23: -0.0600 REMARK 3 S31: 0.4105 S32: 0.3499 S33: -0.0360 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 211 THROUGH 258 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.8726 0.1104 -39.2367 REMARK 3 T TENSOR REMARK 3 T11: 0.4205 T22: 0.3601 REMARK 3 T33: 0.3151 T12: 0.0019 REMARK 3 T13: -0.0425 T23: 0.0188 REMARK 3 L TENSOR REMARK 3 L11: 3.7408 L22: 4.1450 REMARK 3 L33: 2.5781 L12: -1.5733 REMARK 3 L13: 0.7089 L23: 0.1294 REMARK 3 S TENSOR REMARK 3 S11: 0.1911 S12: 0.5701 S13: 0.4579 REMARK 3 S21: -0.9093 S22: -0.2241 S23: 0.1489 REMARK 3 S31: -0.3177 S32: -0.2160 S33: 0.0564 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 259 THROUGH 314 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.6250 -19.6326 -37.2344 REMARK 3 T TENSOR REMARK 3 T11: 0.2900 T22: 0.3207 REMARK 3 T33: 0.3015 T12: -0.0179 REMARK 3 T13: -0.0341 T23: -0.0607 REMARK 3 L TENSOR REMARK 3 L11: 1.4833 L22: 4.7425 REMARK 3 L33: 1.9229 L12: -0.1989 REMARK 3 L13: 0.4288 L23: 0.3412 REMARK 3 S TENSOR REMARK 3 S11: 0.0101 S12: 0.1395 S13: -0.2362 REMARK 3 S21: -0.3643 S22: -0.1018 S23: 0.2838 REMARK 3 S31: 0.1237 S32: -0.2905 S33: 0.0738 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 315 THROUGH 376 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.9941 0.9658 -26.2307 REMARK 3 T TENSOR REMARK 3 T11: 0.2476 T22: 0.2190 REMARK 3 T33: 0.2893 T12: 0.0178 REMARK 3 T13: 0.0014 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 1.6724 L22: 1.4119 REMARK 3 L33: 2.1712 L12: 0.4551 REMARK 3 L13: 1.2022 L23: 0.7230 REMARK 3 S TENSOR REMARK 3 S11: 0.0483 S12: -0.0274 S13: 0.0925 REMARK 3 S21: -0.0961 S22: -0.1068 S23: 0.2386 REMARK 3 S31: -0.0356 S32: -0.2134 S33: 0.0419 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 377 THROUGH 482 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.0674 -7.5951 -10.6162 REMARK 3 T TENSOR REMARK 3 T11: 0.2302 T22: 0.2503 REMARK 3 T33: 0.2152 T12: -0.0236 REMARK 3 T13: 0.0013 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 2.9267 L22: 1.6920 REMARK 3 L33: 1.1407 L12: -0.1246 REMARK 3 L13: -0.2466 L23: -0.5700 REMARK 3 S TENSOR REMARK 3 S11: 0.1074 S12: -0.2757 S13: -0.0680 REMARK 3 S21: 0.0757 S22: -0.0224 S23: 0.1657 REMARK 3 S31: 0.0284 S32: -0.2127 S33: -0.0869 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 483 THROUGH 506 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.6698 -15.2715 -3.7639 REMARK 3 T TENSOR REMARK 3 T11: 0.2477 T22: 0.5707 REMARK 3 T33: 0.4176 T12: -0.0866 REMARK 3 T13: 0.0849 T23: 0.0865 REMARK 3 L TENSOR REMARK 3 L11: 4.0351 L22: 2.7594 REMARK 3 L33: 5.6960 L12: 0.3028 REMARK 3 L13: 1.9689 L23: -1.6568 REMARK 3 S TENSOR REMARK 3 S11: -0.0888 S12: -1.2601 S13: -0.3903 REMARK 3 S21: 0.5294 S22: 0.2859 S23: 0.6138 REMARK 3 S31: 0.0800 S32: -0.7144 S33: -0.0767 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6496 -19.8994 -26.5390 REMARK 3 T TENSOR REMARK 3 T11: 0.4376 T22: 0.3267 REMARK 3 T33: 0.4036 T12: 0.0618 REMARK 3 T13: -0.1060 T23: -0.0559 REMARK 3 L TENSOR REMARK 3 L11: 5.7103 L22: 3.4300 REMARK 3 L33: 5.1731 L12: 0.7256 REMARK 3 L13: -0.1038 L23: 0.7558 REMARK 3 S TENSOR REMARK 3 S11: 0.3070 S12: 0.5570 S13: -0.4234 REMARK 3 S21: -0.4830 S22: 0.0695 S23: 0.0766 REMARK 3 S31: 0.6875 S32: 0.3465 S33: -0.3178 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 4 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3231 -18.3114 -25.0848 REMARK 3 T TENSOR REMARK 3 T11: 0.4817 T22: 0.5698 REMARK 3 T33: 0.3434 T12: -0.1191 REMARK 3 T13: 0.0096 T23: -0.1744 REMARK 3 L TENSOR REMARK 3 L11: 5.0305 L22: 5.5264 REMARK 3 L33: 3.4230 L12: 0.4037 REMARK 3 L13: -1.8488 L23: -1.5743 REMARK 3 S TENSOR REMARK 3 S11: 0.2858 S12: -0.0596 S13: -0.2015 REMARK 3 S21: 0.2105 S22: 0.2229 S23: -0.1248 REMARK 3 S31: -0.7052 S32: 1.3085 S33: -0.3258 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4K9A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000079052. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25590 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.260 REMARK 200 RESOLUTION RANGE LOW (A) : 78.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, 40% MPD, PH 6.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.70750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.00900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.67000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.70750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.00900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.67000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.70750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.00900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.67000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.70750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.00900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.67000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 722 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 146 REMARK 465 PRO A 147 REMARK 465 ASP A 148 REMARK 465 ARG A 241 REMARK 465 ILE A 242 REMARK 465 PRO A 243 REMARK 465 ARG A 244 REMARK 465 LEU A 507 REMARK 465 DA D 16 REMARK 465 DA D 17 REMARK 465 DT E 1 REMARK 465 DT E 2 REMARK 465 DT E 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC D 8 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DA D 11 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 DA D 11 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC D 14 C3' - C2' - C1' ANGL. DEV. = -5.9 DEGREES REMARK 500 DC D 14 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DA E 14 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DA E 14 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 185 -84.79 -126.93 REMARK 500 GLU A 186 68.92 -67.62 REMARK 500 SER A 207 -62.26 69.39 REMARK 500 TYR A 229 -125.56 52.58 REMARK 500 TRP A 331 -70.20 -122.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 GMP AND ATP WAS ADDED TO THE CRYSTALLIZATION CONDITION AND A P-G-P- REMARK 600 A LIGAND WAS OBSERVED WHICH HAS BEEN REPRESENTED AS G AND A WITH A REMARK 600 2' TO 5' LINK REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 378 NE2 REMARK 620 2 CYS A 384 SG 113.8 REMARK 620 3 CYS A 385 SG 103.1 132.6 REMARK 620 4 CYS A 392 SG 93.3 102.2 104.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5GP A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 604 DBREF 4K9A A 147 507 UNP Q8C6L5 CGAS_MOUSE 147 507 DBREF 4K9A D 1 17 PDB 4K9A 4K9A 1 17 DBREF 4K9A E 1 17 PDB 4K9A 4K9A 1 17 SEQADV 4K9A SER A 146 UNP Q8C6L5 EXPRESSION TAG SEQRES 1 A 362 SER PRO ASP LYS LEU LYS LYS VAL LEU ASP LYS LEU ARG SEQRES 2 A 362 LEU LYS ARG LYS ASP ILE SER GLU ALA ALA GLU THR VAL SEQRES 3 A 362 ASN LYS VAL VAL GLU ARG LEU LEU ARG ARG MET GLN LYS SEQRES 4 A 362 ARG GLU SER GLU PHE LYS GLY VAL GLU GLN LEU ASN THR SEQRES 5 A 362 GLY SER TYR TYR GLU HIS VAL LYS ILE SER ALA PRO ASN SEQRES 6 A 362 GLU PHE ASP VAL MET PHE LYS LEU GLU VAL PRO ARG ILE SEQRES 7 A 362 GLU LEU GLN GLU TYR TYR GLU THR GLY ALA PHE TYR LEU SEQRES 8 A 362 VAL LYS PHE LYS ARG ILE PRO ARG GLY ASN PRO LEU SER SEQRES 9 A 362 HIS PHE LEU GLU GLY GLU VAL LEU SER ALA THR LYS MET SEQRES 10 A 362 LEU SER LYS PHE ARG LYS ILE ILE LYS GLU GLU VAL LYS SEQRES 11 A 362 GLU ILE LYS ASP ILE ASP VAL SER VAL GLU LYS GLU LYS SEQRES 12 A 362 PRO GLY SER PRO ALA VAL THR LEU LEU ILE ARG ASN PRO SEQRES 13 A 362 GLU GLU ILE SER VAL ASP ILE ILE LEU ALA LEU GLU SER SEQRES 14 A 362 LYS GLY SER TRP PRO ILE SER THR LYS GLU GLY LEU PRO SEQRES 15 A 362 ILE GLN GLY TRP LEU GLY THR LYS VAL ARG THR ASN LEU SEQRES 16 A 362 ARG ARG GLU PRO PHE TYR LEU VAL PRO LYS ASN ALA LYS SEQRES 17 A 362 ASP GLY ASN SER PHE GLN GLY GLU THR TRP ARG LEU SER SEQRES 18 A 362 PHE SER HIS THR GLU LYS TYR ILE LEU ASN ASN HIS GLY SEQRES 19 A 362 ILE GLU LYS THR CYS CYS GLU SER SER GLY ALA LYS CYS SEQRES 20 A 362 CYS ARG LYS GLU CYS LEU LYS LEU MET LYS TYR LEU LEU SEQRES 21 A 362 GLU GLN LEU LYS LYS GLU PHE GLN GLU LEU ASP ALA PHE SEQRES 22 A 362 CYS SER TYR HIS VAL LYS THR ALA ILE PHE HIS MET TRP SEQRES 23 A 362 THR GLN ASP PRO GLN ASP SER GLN TRP ASP PRO ARG ASN SEQRES 24 A 362 LEU SER SER CYS PHE ASP LYS LEU LEU ALA PHE PHE LEU SEQRES 25 A 362 GLU CYS LEU ARG THR GLU LYS LEU ASP HIS TYR PHE ILE SEQRES 26 A 362 PRO LYS PHE ASN LEU PHE SER GLN GLU LEU ILE ASP ARG SEQRES 27 A 362 LYS SER LYS GLU PHE LEU SER LYS LYS ILE GLU TYR GLU SEQRES 28 A 362 ARG ASN ASN GLY PHE PRO ILE PHE ASP LYS LEU SEQRES 1 D 17 DA DA DA DT DT DG DC DC DG DA DA DG DA SEQRES 2 D 17 DC DG DA DA SEQRES 1 E 17 DT DT DT DC DG DT DC DT DT DC DG DG DC SEQRES 2 E 17 DA DA DT DT HET ZN A 601 1 HET PO4 A 602 5 HET 5GP A 603 24 HET AMP A 604 22 HETNAM ZN ZINC ION HETNAM PO4 PHOSPHATE ION HETNAM 5GP GUANOSINE-5'-MONOPHOSPHATE HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 4 ZN ZN 2+ FORMUL 5 PO4 O4 P 3- FORMUL 6 5GP C10 H14 N5 O8 P FORMUL 7 AMP C10 H14 N5 O7 P FORMUL 8 HOH *199(H2 O) HELIX 1 1 LYS A 149 ARG A 158 1 10 HELIX 2 2 LYS A 160 LYS A 184 1 25 HELIX 3 3 ASN A 246 HIS A 250 5 5 HELIX 4 4 SER A 258 GLU A 276 1 19 HELIX 5 5 PRO A 319 LYS A 323 5 5 HELIX 6 6 GLY A 333 ARG A 341 1 9 HELIX 7 7 PHE A 367 ASN A 377 1 11 HELIX 8 8 CYS A 393 PHE A 412 1 20 HELIX 9 9 GLN A 413 ASP A 416 5 4 HELIX 10 10 CYS A 419 ASP A 434 1 16 HELIX 11 11 GLN A 436 ARG A 443 5 8 HELIX 12 12 ASN A 444 GLU A 463 1 20 HELIX 13 13 ASP A 482 ASN A 499 1 18 HELIX 14 14 PHE A 501 LYS A 506 5 6 SHEET 1 A 7 GLU A 193 THR A 197 0 SHEET 2 A 7 GLU A 211 GLU A 219 -1 O MET A 215 N LEU A 195 SHEET 3 A 7 GLU A 303 SER A 314 1 O GLU A 313 N LEU A 218 SHEET 4 A 7 PHE A 345 VAL A 348 -1 O LEU A 347 N LEU A 312 SHEET 5 A 7 TRP A 363 SER A 366 -1 O ARG A 364 N VAL A 348 SHEET 6 A 7 PHE A 234 PHE A 239 -1 N TYR A 235 O TRP A 363 SHEET 7 A 7 ILE A 223 GLU A 227 -1 N GLU A 224 O LYS A 238 SHEET 1 B 5 GLU A 193 THR A 197 0 SHEET 2 B 5 GLU A 211 GLU A 219 -1 O MET A 215 N LEU A 195 SHEET 3 B 5 GLU A 303 SER A 314 1 O GLU A 313 N LEU A 218 SHEET 4 B 5 ALA A 293 ARG A 299 -1 N ILE A 298 O ILE A 304 SHEET 5 B 5 ASP A 281 VAL A 284 -1 N SER A 283 O LEU A 297 SHEET 1 C 2 LEU A 252 GLU A 253 0 SHEET 2 C 2 VAL A 256 LEU A 257 -1 O VAL A 256 N GLU A 253 SHEET 1 D 2 LYS A 353 ASP A 354 0 SHEET 2 D 2 SER A 357 PHE A 358 -1 O SER A 357 N ASP A 354 LINK O2' 5GP A 603 P AMP A 604 1555 1555 1.53 LINK NE2 HIS A 378 ZN ZN A 601 1555 1555 2.15 LINK SG CYS A 384 ZN ZN A 601 1555 1555 2.35 LINK SG CYS A 385 ZN ZN A 601 1555 1555 2.34 LINK SG CYS A 392 ZN ZN A 601 1555 1555 2.33 CISPEP 1 LYS A 184 ARG A 185 0 2.87 CISPEP 2 ASN A 300 PRO A 301 0 6.71 SITE 1 AC1 4 HIS A 378 CYS A 384 CYS A 385 CYS A 392 SITE 1 AC2 5 LYS A 205 ILE A 206 LYS A 402 HOH A 750 SITE 2 AC2 5 HOH A 817 SITE 1 AC3 13 SER A 199 ASP A 213 LYS A 350 ARG A 364 SITE 2 AC3 13 CYS A 419 SER A 420 TYR A 421 AMP A 604 SITE 3 AC3 13 HOH A 730 HOH A 737 HOH A 738 HOH A 808 SITE 4 AC3 13 HOH A 812 SITE 1 AC4 10 ASP A 213 PRO A 292 ASP A 307 ILE A 309 SITE 2 AC4 10 LYS A 350 LEU A 365 SER A 366 SER A 368 SITE 3 AC4 10 5GP A 603 HOH A 843 CRYST1 85.415 98.018 131.340 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011708 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010202 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007614 0.00000