data_4K9B # _entry.id 4K9B # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.393 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4K9B pdb_00004k9b 10.2210/pdb4k9b/pdb NDB NA2378 ? ? RCSB RCSB079053 ? ? WWPDB D_1000079053 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-05-15 2 'Structure model' 1 1 2013-08-28 3 'Structure model' 1 2 2024-02-28 4 'Structure model' 2 0 2024-05-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Atomic model' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Non-polymer description' 9 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_conn 5 3 'Structure model' struct_conn_type 6 3 'Structure model' struct_ref_seq_dif 7 3 'Structure model' struct_site 8 4 'Structure model' atom_site 9 4 'Structure model' chem_comp 10 4 'Structure model' chem_comp_atom 11 4 'Structure model' chem_comp_bond 12 4 'Structure model' entity 13 4 'Structure model' pdbx_entity_nonpoly 14 4 'Structure model' pdbx_nonpoly_scheme 15 4 'Structure model' struct_conn 16 4 'Structure model' struct_site 17 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.conn_type_id' 4 3 'Structure model' '_struct_conn.id' 5 3 'Structure model' '_struct_conn.pdbx_dist_value' 6 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 8 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 9 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 10 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 11 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 12 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 13 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 14 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 15 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 16 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 17 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 18 3 'Structure model' '_struct_conn_type.id' 19 3 'Structure model' '_struct_ref_seq_dif.details' 20 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 21 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 22 3 'Structure model' '_struct_site.pdbx_auth_seq_id' 23 4 'Structure model' '_atom_site.auth_atom_id' 24 4 'Structure model' '_atom_site.auth_comp_id' 25 4 'Structure model' '_atom_site.label_atom_id' 26 4 'Structure model' '_atom_site.label_comp_id' 27 4 'Structure model' '_chem_comp.formula' 28 4 'Structure model' '_chem_comp.formula_weight' 29 4 'Structure model' '_chem_comp.id' 30 4 'Structure model' '_chem_comp.mon_nstd_flag' 31 4 'Structure model' '_chem_comp.name' 32 4 'Structure model' '_chem_comp.type' 33 4 'Structure model' '_chem_comp_atom.atom_id' 34 4 'Structure model' '_chem_comp_atom.comp_id' 35 4 'Structure model' '_chem_comp_atom.pdbx_aromatic_flag' 36 4 'Structure model' '_chem_comp_atom.pdbx_stereo_config' 37 4 'Structure model' '_chem_comp_atom.type_symbol' 38 4 'Structure model' '_chem_comp_bond.atom_id_1' 39 4 'Structure model' '_chem_comp_bond.atom_id_2' 40 4 'Structure model' '_chem_comp_bond.comp_id' 41 4 'Structure model' '_chem_comp_bond.pdbx_aromatic_flag' 42 4 'Structure model' '_chem_comp_bond.value_order' 43 4 'Structure model' '_entity.pdbx_description' 44 4 'Structure model' '_pdbx_entity_nonpoly.comp_id' 45 4 'Structure model' '_pdbx_entity_nonpoly.name' 46 4 'Structure model' '_pdbx_nonpoly_scheme.mon_id' 47 4 'Structure model' '_pdbx_nonpoly_scheme.pdb_mon_id' 48 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 49 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 50 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 51 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 52 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 53 4 'Structure model' '_struct_site.details' 54 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 55 4 'Structure model' '_struct_site_gen.auth_comp_id' 56 4 'Structure model' '_struct_site_gen.label_comp_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4K9B _pdbx_database_status.recvd_initial_deposition_date 2013-04-19 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gao, P.' 1 'Wu, Y.' 2 'Patel, D.J.' 3 # _citation.id primary _citation.title ;Cyclic [G(2',5')pA(3',5')p] is the metazoan second messenger produced by DNA-activated cyclic GMP-AMP synthase. ; _citation.journal_abbrev 'Cell(Cambridge,Mass.)' _citation.journal_volume 153 _citation.page_first 1094 _citation.page_last 1107 _citation.year 2013 _citation.journal_id_ASTM CELLB5 _citation.country US _citation.journal_id_ISSN 0092-8674 _citation.journal_id_CSD 0998 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23647843 _citation.pdbx_database_id_DOI 10.1016/j.cell.2013.04.046 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gao, P.' 1 ? primary 'Ascano, M.' 2 ? primary 'Wu, Y.' 3 ? primary 'Barchet, W.' 4 ? primary 'Gaffney, B.L.' 5 ? primary 'Zillinger, T.' 6 ? primary 'Serganov, A.A.' 7 ? primary 'Liu, Y.' 8 ? primary 'Jones, R.A.' 9 ? primary 'Hartmann, G.' 10 ? primary 'Tuschl, T.' 11 ? primary 'Patel, D.J.' 12 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cyclic GMP-AMP synthase' 42512.121 1 2.7.7.- ? 'C-TERMINAL DOMAIN, UNP residues 147-507' ? 2 polymer syn DNA-F 5253.451 1 ? ? ? ? 3 polymer syn DNA-R 5159.343 1 ? ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 5 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 6 non-polymer syn "GUANOSINE-5'-MONOPHOSPHATE" 363.221 1 ? ? ? ? 7 non-polymer syn 'ADENOSINE MONOPHOSPHATE' 347.221 1 ? ? ? ? 8 water nat water 18.015 165 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'cGAMP synthase, cGAS, m-cGAS, Mab-21 domain-containing protein 1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SPDKLKKVLDKLRLKRKDISEAAETVNKVVERLLRRMQKRESEFKGVEQLNTGSYYEHVKISAPNEFDVMFKLEVPRIEL QEYYETGAFYLVKFKRIPRGNPLSHFLEGEVLSATKMLSKFRKIIKEEVKEIKDIDVSVEKEKPGSPAVTLLIRNPEEIS VDIILALESKGSWPISTKEGLPIQGWLGTKVRTNLRREPFYLVPKNAKDGNSFQGETWRLSFSHTEKYILNNHGIEKTCC ESSGAKCCRKECLKLMKYLLEQLKKEFQELDAFCSYHVKTAIFHMWTQDPQDSQWDPRNLSSCFDKLLAFFLECLRTEKL DHYFIPKFNLFSQELIDRKSKEFLSKKIEYERNNGFPIFDKL ; ;SPDKLKKVLDKLRLKRKDISEAAETVNKVVERLLRRMQKRESEFKGVEQLNTGSYYEHVKISAPNEFDVMFKLEVPRIEL QEYYETGAFYLVKFKRIPRGNPLSHFLEGEVLSATKMLSKFRKIIKEEVKEIKDIDVSVEKEKPGSPAVTLLIRNPEEIS VDIILALESKGSWPISTKEGLPIQGWLGTKVRTNLRREPFYLVPKNAKDGNSFQGETWRLSFSHTEKYILNNHGIEKTCC ESSGAKCCRKECLKLMKYLLEQLKKEFQELDAFCSYHVKTAIFHMWTQDPQDSQWDPRNLSSCFDKLLAFFLECLRTEKL DHYFIPKFNLFSQELIDRKSKEFLSKKIEYERNNGFPIFDKL ; A ? 2 polydeoxyribonucleotide no no '(DA)(DA)(DA)(DT)(DT)(DG)(DC)(DC)(DG)(DA)(DA)(DG)(DA)(DC)(DG)(DA)(DA)' AAATTGCCGAAGACGAA D ? 3 polydeoxyribonucleotide no no '(DT)(DT)(DT)(DC)(DG)(DT)(DC)(DT)(DT)(DC)(DG)(DG)(DC)(DA)(DA)(DT)(DT)' TTTCGTCTTCGGCAATT E ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'ZINC ION' ZN 5 'PHOSPHATE ION' PO4 6 "GUANOSINE-5'-MONOPHOSPHATE" 5GP 7 'ADENOSINE MONOPHOSPHATE' AMP 8 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 PRO n 1 3 ASP n 1 4 LYS n 1 5 LEU n 1 6 LYS n 1 7 LYS n 1 8 VAL n 1 9 LEU n 1 10 ASP n 1 11 LYS n 1 12 LEU n 1 13 ARG n 1 14 LEU n 1 15 LYS n 1 16 ARG n 1 17 LYS n 1 18 ASP n 1 19 ILE n 1 20 SER n 1 21 GLU n 1 22 ALA n 1 23 ALA n 1 24 GLU n 1 25 THR n 1 26 VAL n 1 27 ASN n 1 28 LYS n 1 29 VAL n 1 30 VAL n 1 31 GLU n 1 32 ARG n 1 33 LEU n 1 34 LEU n 1 35 ARG n 1 36 ARG n 1 37 MET n 1 38 GLN n 1 39 LYS n 1 40 ARG n 1 41 GLU n 1 42 SER n 1 43 GLU n 1 44 PHE n 1 45 LYS n 1 46 GLY n 1 47 VAL n 1 48 GLU n 1 49 GLN n 1 50 LEU n 1 51 ASN n 1 52 THR n 1 53 GLY n 1 54 SER n 1 55 TYR n 1 56 TYR n 1 57 GLU n 1 58 HIS n 1 59 VAL n 1 60 LYS n 1 61 ILE n 1 62 SER n 1 63 ALA n 1 64 PRO n 1 65 ASN n 1 66 GLU n 1 67 PHE n 1 68 ASP n 1 69 VAL n 1 70 MET n 1 71 PHE n 1 72 LYS n 1 73 LEU n 1 74 GLU n 1 75 VAL n 1 76 PRO n 1 77 ARG n 1 78 ILE n 1 79 GLU n 1 80 LEU n 1 81 GLN n 1 82 GLU n 1 83 TYR n 1 84 TYR n 1 85 GLU n 1 86 THR n 1 87 GLY n 1 88 ALA n 1 89 PHE n 1 90 TYR n 1 91 LEU n 1 92 VAL n 1 93 LYS n 1 94 PHE n 1 95 LYS n 1 96 ARG n 1 97 ILE n 1 98 PRO n 1 99 ARG n 1 100 GLY n 1 101 ASN n 1 102 PRO n 1 103 LEU n 1 104 SER n 1 105 HIS n 1 106 PHE n 1 107 LEU n 1 108 GLU n 1 109 GLY n 1 110 GLU n 1 111 VAL n 1 112 LEU n 1 113 SER n 1 114 ALA n 1 115 THR n 1 116 LYS n 1 117 MET n 1 118 LEU n 1 119 SER n 1 120 LYS n 1 121 PHE n 1 122 ARG n 1 123 LYS n 1 124 ILE n 1 125 ILE n 1 126 LYS n 1 127 GLU n 1 128 GLU n 1 129 VAL n 1 130 LYS n 1 131 GLU n 1 132 ILE n 1 133 LYS n 1 134 ASP n 1 135 ILE n 1 136 ASP n 1 137 VAL n 1 138 SER n 1 139 VAL n 1 140 GLU n 1 141 LYS n 1 142 GLU n 1 143 LYS n 1 144 PRO n 1 145 GLY n 1 146 SER n 1 147 PRO n 1 148 ALA n 1 149 VAL n 1 150 THR n 1 151 LEU n 1 152 LEU n 1 153 ILE n 1 154 ARG n 1 155 ASN n 1 156 PRO n 1 157 GLU n 1 158 GLU n 1 159 ILE n 1 160 SER n 1 161 VAL n 1 162 ASP n 1 163 ILE n 1 164 ILE n 1 165 LEU n 1 166 ALA n 1 167 LEU n 1 168 GLU n 1 169 SER n 1 170 LYS n 1 171 GLY n 1 172 SER n 1 173 TRP n 1 174 PRO n 1 175 ILE n 1 176 SER n 1 177 THR n 1 178 LYS n 1 179 GLU n 1 180 GLY n 1 181 LEU n 1 182 PRO n 1 183 ILE n 1 184 GLN n 1 185 GLY n 1 186 TRP n 1 187 LEU n 1 188 GLY n 1 189 THR n 1 190 LYS n 1 191 VAL n 1 192 ARG n 1 193 THR n 1 194 ASN n 1 195 LEU n 1 196 ARG n 1 197 ARG n 1 198 GLU n 1 199 PRO n 1 200 PHE n 1 201 TYR n 1 202 LEU n 1 203 VAL n 1 204 PRO n 1 205 LYS n 1 206 ASN n 1 207 ALA n 1 208 LYS n 1 209 ASP n 1 210 GLY n 1 211 ASN n 1 212 SER n 1 213 PHE n 1 214 GLN n 1 215 GLY n 1 216 GLU n 1 217 THR n 1 218 TRP n 1 219 ARG n 1 220 LEU n 1 221 SER n 1 222 PHE n 1 223 SER n 1 224 HIS n 1 225 THR n 1 226 GLU n 1 227 LYS n 1 228 TYR n 1 229 ILE n 1 230 LEU n 1 231 ASN n 1 232 ASN n 1 233 HIS n 1 234 GLY n 1 235 ILE n 1 236 GLU n 1 237 LYS n 1 238 THR n 1 239 CYS n 1 240 CYS n 1 241 GLU n 1 242 SER n 1 243 SER n 1 244 GLY n 1 245 ALA n 1 246 LYS n 1 247 CYS n 1 248 CYS n 1 249 ARG n 1 250 LYS n 1 251 GLU n 1 252 CYS n 1 253 LEU n 1 254 LYS n 1 255 LEU n 1 256 MET n 1 257 LYS n 1 258 TYR n 1 259 LEU n 1 260 LEU n 1 261 GLU n 1 262 GLN n 1 263 LEU n 1 264 LYS n 1 265 LYS n 1 266 GLU n 1 267 PHE n 1 268 GLN n 1 269 GLU n 1 270 LEU n 1 271 ASP n 1 272 ALA n 1 273 PHE n 1 274 CYS n 1 275 SER n 1 276 TYR n 1 277 HIS n 1 278 VAL n 1 279 LYS n 1 280 THR n 1 281 ALA n 1 282 ILE n 1 283 PHE n 1 284 HIS n 1 285 MET n 1 286 TRP n 1 287 THR n 1 288 GLN n 1 289 ASP n 1 290 PRO n 1 291 GLN n 1 292 ASP n 1 293 SER n 1 294 GLN n 1 295 TRP n 1 296 ASP n 1 297 PRO n 1 298 ARG n 1 299 ASN n 1 300 LEU n 1 301 SER n 1 302 SER n 1 303 CYS n 1 304 PHE n 1 305 ASP n 1 306 LYS n 1 307 LEU n 1 308 LEU n 1 309 ALA n 1 310 PHE n 1 311 PHE n 1 312 LEU n 1 313 GLU n 1 314 CYS n 1 315 LEU n 1 316 ARG n 1 317 THR n 1 318 GLU n 1 319 LYS n 1 320 LEU n 1 321 ASP n 1 322 HIS n 1 323 TYR n 1 324 PHE n 1 325 ILE n 1 326 PRO n 1 327 LYS n 1 328 PHE n 1 329 ASN n 1 330 LEU n 1 331 PHE n 1 332 SER n 1 333 GLN n 1 334 GLU n 1 335 LEU n 1 336 ILE n 1 337 ASP n 1 338 ARG n 1 339 LYS n 1 340 SER n 1 341 LYS n 1 342 GLU n 1 343 PHE n 1 344 LEU n 1 345 SER n 1 346 LYS n 1 347 LYS n 1 348 ILE n 1 349 GLU n 1 350 TYR n 1 351 GLU n 1 352 ARG n 1 353 ASN n 1 354 ASN n 1 355 GLY n 1 356 PHE n 1 357 PRO n 1 358 ILE n 1 359 PHE n 1 360 ASP n 1 361 LYS n 1 362 LEU n 2 1 DA n 2 2 DA n 2 3 DA n 2 4 DT n 2 5 DT n 2 6 DG n 2 7 DC n 2 8 DC n 2 9 DG n 2 10 DA n 2 11 DA n 2 12 DG n 2 13 DA n 2 14 DC n 2 15 DG n 2 16 DA n 2 17 DA n 3 1 DT n 3 2 DT n 3 3 DT n 3 4 DC n 3 5 DG n 3 6 DT n 3 7 DC n 3 8 DT n 3 9 DT n 3 10 DC n 3 11 DG n 3 12 DG n 3 13 DC n 3 14 DA n 3 15 DA n 3 16 DT n 3 17 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Mb21d1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? ? ? ? 'This sequence was synthesized by regular protocol' 3 1 sample ? ? ? ? ? 'This sequence was synthesized by regular protocol' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5GP non-polymer . "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 AMP non-polymer . 'ADENOSINE MONOPHOSPHATE' ? 'C10 H14 N5 O7 P' 347.221 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 146 ? ? ? A . n A 1 2 PRO 2 147 ? ? ? A . n A 1 3 ASP 3 148 ? ? ? A . n A 1 4 LYS 4 149 149 LYS LYS A . n A 1 5 LEU 5 150 150 LEU LEU A . n A 1 6 LYS 6 151 151 LYS LYS A . n A 1 7 LYS 7 152 152 LYS LYS A . n A 1 8 VAL 8 153 153 VAL VAL A . n A 1 9 LEU 9 154 154 LEU LEU A . n A 1 10 ASP 10 155 155 ASP ASP A . n A 1 11 LYS 11 156 156 LYS LYS A . n A 1 12 LEU 12 157 157 LEU LEU A . n A 1 13 ARG 13 158 158 ARG ARG A . n A 1 14 LEU 14 159 159 LEU LEU A . n A 1 15 LYS 15 160 160 LYS LYS A . n A 1 16 ARG 16 161 161 ARG ARG A . n A 1 17 LYS 17 162 162 LYS LYS A . n A 1 18 ASP 18 163 163 ASP ASP A . n A 1 19 ILE 19 164 164 ILE ILE A . n A 1 20 SER 20 165 165 SER SER A . n A 1 21 GLU 21 166 166 GLU GLU A . n A 1 22 ALA 22 167 167 ALA ALA A . n A 1 23 ALA 23 168 168 ALA ALA A . n A 1 24 GLU 24 169 169 GLU GLU A . n A 1 25 THR 25 170 170 THR THR A . n A 1 26 VAL 26 171 171 VAL VAL A . n A 1 27 ASN 27 172 172 ASN ASN A . n A 1 28 LYS 28 173 173 LYS LYS A . n A 1 29 VAL 29 174 174 VAL VAL A . n A 1 30 VAL 30 175 175 VAL VAL A . n A 1 31 GLU 31 176 176 GLU GLU A . n A 1 32 ARG 32 177 177 ARG ARG A . n A 1 33 LEU 33 178 178 LEU LEU A . n A 1 34 LEU 34 179 179 LEU LEU A . n A 1 35 ARG 35 180 180 ARG ARG A . n A 1 36 ARG 36 181 181 ARG ARG A . n A 1 37 MET 37 182 182 MET MET A . n A 1 38 GLN 38 183 183 GLN GLN A . n A 1 39 LYS 39 184 184 LYS LYS A . n A 1 40 ARG 40 185 185 ARG ARG A . n A 1 41 GLU 41 186 186 GLU GLU A . n A 1 42 SER 42 187 187 SER SER A . n A 1 43 GLU 43 188 188 GLU GLU A . n A 1 44 PHE 44 189 189 PHE PHE A . n A 1 45 LYS 45 190 190 LYS LYS A . n A 1 46 GLY 46 191 191 GLY GLY A . n A 1 47 VAL 47 192 192 VAL VAL A . n A 1 48 GLU 48 193 193 GLU GLU A . n A 1 49 GLN 49 194 194 GLN GLN A . n A 1 50 LEU 50 195 195 LEU LEU A . n A 1 51 ASN 51 196 196 ASN ASN A . n A 1 52 THR 52 197 197 THR THR A . n A 1 53 GLY 53 198 198 GLY GLY A . n A 1 54 SER 54 199 199 SER SER A . n A 1 55 TYR 55 200 200 TYR TYR A . n A 1 56 TYR 56 201 201 TYR TYR A . n A 1 57 GLU 57 202 202 GLU GLU A . n A 1 58 HIS 58 203 203 HIS HIS A . n A 1 59 VAL 59 204 204 VAL VAL A . n A 1 60 LYS 60 205 205 LYS LYS A . n A 1 61 ILE 61 206 206 ILE ILE A . n A 1 62 SER 62 207 207 SER SER A . n A 1 63 ALA 63 208 208 ALA ALA A . n A 1 64 PRO 64 209 209 PRO PRO A . n A 1 65 ASN 65 210 210 ASN ASN A . n A 1 66 GLU 66 211 211 GLU GLU A . n A 1 67 PHE 67 212 212 PHE PHE A . n A 1 68 ASP 68 213 213 ASP ASP A . n A 1 69 VAL 69 214 214 VAL VAL A . n A 1 70 MET 70 215 215 MET MET A . n A 1 71 PHE 71 216 216 PHE PHE A . n A 1 72 LYS 72 217 217 LYS LYS A . n A 1 73 LEU 73 218 218 LEU LEU A . n A 1 74 GLU 74 219 219 GLU GLU A . n A 1 75 VAL 75 220 220 VAL VAL A . n A 1 76 PRO 76 221 221 PRO PRO A . n A 1 77 ARG 77 222 222 ARG ARG A . n A 1 78 ILE 78 223 223 ILE ILE A . n A 1 79 GLU 79 224 224 GLU GLU A . n A 1 80 LEU 80 225 225 LEU LEU A . n A 1 81 GLN 81 226 226 GLN GLN A . n A 1 82 GLU 82 227 227 GLU GLU A . n A 1 83 TYR 83 228 228 TYR TYR A . n A 1 84 TYR 84 229 229 TYR TYR A . n A 1 85 GLU 85 230 230 GLU GLU A . n A 1 86 THR 86 231 231 THR THR A . n A 1 87 GLY 87 232 232 GLY GLY A . n A 1 88 ALA 88 233 233 ALA ALA A . n A 1 89 PHE 89 234 234 PHE PHE A . n A 1 90 TYR 90 235 235 TYR TYR A . n A 1 91 LEU 91 236 236 LEU LEU A . n A 1 92 VAL 92 237 237 VAL VAL A . n A 1 93 LYS 93 238 238 LYS LYS A . n A 1 94 PHE 94 239 239 PHE PHE A . n A 1 95 LYS 95 240 240 LYS LYS A . n A 1 96 ARG 96 241 ? ? ? A . n A 1 97 ILE 97 242 ? ? ? A . n A 1 98 PRO 98 243 ? ? ? A . n A 1 99 ARG 99 244 244 ARG ALA A . n A 1 100 GLY 100 245 245 GLY GLY A . n A 1 101 ASN 101 246 246 ASN ASN A . n A 1 102 PRO 102 247 247 PRO PRO A . n A 1 103 LEU 103 248 248 LEU LEU A . n A 1 104 SER 104 249 249 SER SER A . n A 1 105 HIS 105 250 250 HIS HIS A . n A 1 106 PHE 106 251 251 PHE PHE A . n A 1 107 LEU 107 252 252 LEU LEU A . n A 1 108 GLU 108 253 253 GLU GLU A . n A 1 109 GLY 109 254 254 GLY GLY A . n A 1 110 GLU 110 255 255 GLU GLU A . n A 1 111 VAL 111 256 256 VAL VAL A . n A 1 112 LEU 112 257 257 LEU LEU A . n A 1 113 SER 113 258 258 SER SER A . n A 1 114 ALA 114 259 259 ALA ALA A . n A 1 115 THR 115 260 260 THR THR A . n A 1 116 LYS 116 261 261 LYS LYS A . n A 1 117 MET 117 262 262 MET MET A . n A 1 118 LEU 118 263 263 LEU LEU A . n A 1 119 SER 119 264 264 SER SER A . n A 1 120 LYS 120 265 265 LYS LYS A . n A 1 121 PHE 121 266 266 PHE PHE A . n A 1 122 ARG 122 267 267 ARG ARG A . n A 1 123 LYS 123 268 268 LYS LYS A . n A 1 124 ILE 124 269 269 ILE ILE A . n A 1 125 ILE 125 270 270 ILE ILE A . n A 1 126 LYS 126 271 271 LYS LYS A . n A 1 127 GLU 127 272 272 GLU GLU A . n A 1 128 GLU 128 273 273 GLU GLU A . n A 1 129 VAL 129 274 274 VAL VAL A . n A 1 130 LYS 130 275 275 LYS LYS A . n A 1 131 GLU 131 276 276 GLU GLU A . n A 1 132 ILE 132 277 277 ILE ILE A . n A 1 133 LYS 133 278 278 LYS LYS A . n A 1 134 ASP 134 279 279 ASP ASP A . n A 1 135 ILE 135 280 280 ILE ILE A . n A 1 136 ASP 136 281 281 ASP ASP A . n A 1 137 VAL 137 282 282 VAL VAL A . n A 1 138 SER 138 283 283 SER SER A . n A 1 139 VAL 139 284 284 VAL VAL A . n A 1 140 GLU 140 285 285 GLU GLU A . n A 1 141 LYS 141 286 286 LYS LYS A . n A 1 142 GLU 142 287 287 GLU GLU A . n A 1 143 LYS 143 288 288 LYS LYS A . n A 1 144 PRO 144 289 289 PRO PRO A . n A 1 145 GLY 145 290 290 GLY GLY A . n A 1 146 SER 146 291 291 SER SER A . n A 1 147 PRO 147 292 292 PRO PRO A . n A 1 148 ALA 148 293 293 ALA ALA A . n A 1 149 VAL 149 294 294 VAL VAL A . n A 1 150 THR 150 295 295 THR THR A . n A 1 151 LEU 151 296 296 LEU LEU A . n A 1 152 LEU 152 297 297 LEU LEU A . n A 1 153 ILE 153 298 298 ILE ILE A . n A 1 154 ARG 154 299 299 ARG ARG A . n A 1 155 ASN 155 300 300 ASN ASN A . n A 1 156 PRO 156 301 301 PRO PRO A . n A 1 157 GLU 157 302 302 GLU GLU A . n A 1 158 GLU 158 303 303 GLU GLU A . n A 1 159 ILE 159 304 304 ILE ILE A . n A 1 160 SER 160 305 305 SER SER A . n A 1 161 VAL 161 306 306 VAL VAL A . n A 1 162 ASP 162 307 307 ASP ASP A . n A 1 163 ILE 163 308 308 ILE ILE A . n A 1 164 ILE 164 309 309 ILE ILE A . n A 1 165 LEU 165 310 310 LEU LEU A . n A 1 166 ALA 166 311 311 ALA ALA A . n A 1 167 LEU 167 312 312 LEU LEU A . n A 1 168 GLU 168 313 313 GLU GLU A . n A 1 169 SER 169 314 314 SER SER A . n A 1 170 LYS 170 315 315 LYS LYS A . n A 1 171 GLY 171 316 316 GLY GLY A . n A 1 172 SER 172 317 317 SER SER A . n A 1 173 TRP 173 318 318 TRP TRP A . n A 1 174 PRO 174 319 319 PRO PRO A . n A 1 175 ILE 175 320 320 ILE ILE A . n A 1 176 SER 176 321 321 SER SER A . n A 1 177 THR 177 322 322 THR THR A . n A 1 178 LYS 178 323 323 LYS LYS A . n A 1 179 GLU 179 324 324 GLU GLU A . n A 1 180 GLY 180 325 325 GLY GLY A . n A 1 181 LEU 181 326 326 LEU LEU A . n A 1 182 PRO 182 327 327 PRO PRO A . n A 1 183 ILE 183 328 328 ILE ILE A . n A 1 184 GLN 184 329 329 GLN GLN A . n A 1 185 GLY 185 330 330 GLY GLY A . n A 1 186 TRP 186 331 331 TRP TRP A . n A 1 187 LEU 187 332 332 LEU LEU A . n A 1 188 GLY 188 333 333 GLY GLY A . n A 1 189 THR 189 334 334 THR THR A . n A 1 190 LYS 190 335 335 LYS LYS A . n A 1 191 VAL 191 336 336 VAL VAL A . n A 1 192 ARG 192 337 337 ARG ARG A . n A 1 193 THR 193 338 338 THR THR A . n A 1 194 ASN 194 339 339 ASN ASN A . n A 1 195 LEU 195 340 340 LEU LEU A . n A 1 196 ARG 196 341 341 ARG ARG A . n A 1 197 ARG 197 342 342 ARG ARG A . n A 1 198 GLU 198 343 343 GLU GLU A . n A 1 199 PRO 199 344 344 PRO PRO A . n A 1 200 PHE 200 345 345 PHE PHE A . n A 1 201 TYR 201 346 346 TYR TYR A . n A 1 202 LEU 202 347 347 LEU LEU A . n A 1 203 VAL 203 348 348 VAL VAL A . n A 1 204 PRO 204 349 349 PRO PRO A . n A 1 205 LYS 205 350 350 LYS LYS A . n A 1 206 ASN 206 351 351 ASN ASN A . n A 1 207 ALA 207 352 352 ALA ALA A . n A 1 208 LYS 208 353 353 LYS LYS A . n A 1 209 ASP 209 354 354 ASP ASP A . n A 1 210 GLY 210 355 355 GLY GLY A . n A 1 211 ASN 211 356 356 ASN ASN A . n A 1 212 SER 212 357 357 SER SER A . n A 1 213 PHE 213 358 358 PHE PHE A . n A 1 214 GLN 214 359 359 GLN GLN A . n A 1 215 GLY 215 360 360 GLY GLY A . n A 1 216 GLU 216 361 361 GLU GLU A . n A 1 217 THR 217 362 362 THR THR A . n A 1 218 TRP 218 363 363 TRP TRP A . n A 1 219 ARG 219 364 364 ARG ARG A . n A 1 220 LEU 220 365 365 LEU LEU A . n A 1 221 SER 221 366 366 SER SER A . n A 1 222 PHE 222 367 367 PHE PHE A . n A 1 223 SER 223 368 368 SER SER A . n A 1 224 HIS 224 369 369 HIS HIS A . n A 1 225 THR 225 370 370 THR THR A . n A 1 226 GLU 226 371 371 GLU GLU A . n A 1 227 LYS 227 372 372 LYS LYS A . n A 1 228 TYR 228 373 373 TYR TYR A . n A 1 229 ILE 229 374 374 ILE ILE A . n A 1 230 LEU 230 375 375 LEU LEU A . n A 1 231 ASN 231 376 376 ASN ASN A . n A 1 232 ASN 232 377 377 ASN ASN A . n A 1 233 HIS 233 378 378 HIS HIS A . n A 1 234 GLY 234 379 379 GLY GLY A . n A 1 235 ILE 235 380 380 ILE ILE A . n A 1 236 GLU 236 381 381 GLU GLU A . n A 1 237 LYS 237 382 382 LYS LYS A . n A 1 238 THR 238 383 383 THR THR A . n A 1 239 CYS 239 384 384 CYS CYS A . n A 1 240 CYS 240 385 385 CYS CYS A . n A 1 241 GLU 241 386 386 GLU GLU A . n A 1 242 SER 242 387 387 SER SER A . n A 1 243 SER 243 388 388 SER SER A . n A 1 244 GLY 244 389 389 GLY GLY A . n A 1 245 ALA 245 390 390 ALA ALA A . n A 1 246 LYS 246 391 391 LYS LYS A . n A 1 247 CYS 247 392 392 CYS CYS A . n A 1 248 CYS 248 393 393 CYS CYS A . n A 1 249 ARG 249 394 394 ARG ARG A . n A 1 250 LYS 250 395 395 LYS LYS A . n A 1 251 GLU 251 396 396 GLU GLU A . n A 1 252 CYS 252 397 397 CYS CYS A . n A 1 253 LEU 253 398 398 LEU LEU A . n A 1 254 LYS 254 399 399 LYS LYS A . n A 1 255 LEU 255 400 400 LEU LEU A . n A 1 256 MET 256 401 401 MET MET A . n A 1 257 LYS 257 402 402 LYS LYS A . n A 1 258 TYR 258 403 403 TYR TYR A . n A 1 259 LEU 259 404 404 LEU LEU A . n A 1 260 LEU 260 405 405 LEU LEU A . n A 1 261 GLU 261 406 406 GLU GLU A . n A 1 262 GLN 262 407 407 GLN GLN A . n A 1 263 LEU 263 408 408 LEU LEU A . n A 1 264 LYS 264 409 409 LYS LYS A . n A 1 265 LYS 265 410 410 LYS LYS A . n A 1 266 GLU 266 411 411 GLU GLU A . n A 1 267 PHE 267 412 412 PHE PHE A . n A 1 268 GLN 268 413 413 GLN GLN A . n A 1 269 GLU 269 414 414 GLU GLU A . n A 1 270 LEU 270 415 415 LEU LEU A . n A 1 271 ASP 271 416 416 ASP ASP A . n A 1 272 ALA 272 417 417 ALA ALA A . n A 1 273 PHE 273 418 418 PHE PHE A . n A 1 274 CYS 274 419 419 CYS CYS A . n A 1 275 SER 275 420 420 SER SER A . n A 1 276 TYR 276 421 421 TYR TYR A . n A 1 277 HIS 277 422 422 HIS HIS A . n A 1 278 VAL 278 423 423 VAL VAL A . n A 1 279 LYS 279 424 424 LYS LYS A . n A 1 280 THR 280 425 425 THR THR A . n A 1 281 ALA 281 426 426 ALA ALA A . n A 1 282 ILE 282 427 427 ILE ILE A . n A 1 283 PHE 283 428 428 PHE PHE A . n A 1 284 HIS 284 429 429 HIS HIS A . n A 1 285 MET 285 430 430 MET MET A . n A 1 286 TRP 286 431 431 TRP TRP A . n A 1 287 THR 287 432 432 THR THR A . n A 1 288 GLN 288 433 433 GLN GLN A . n A 1 289 ASP 289 434 434 ASP ASP A . n A 1 290 PRO 290 435 435 PRO PRO A . n A 1 291 GLN 291 436 436 GLN GLN A . n A 1 292 ASP 292 437 437 ASP ASP A . n A 1 293 SER 293 438 438 SER SER A . n A 1 294 GLN 294 439 439 GLN GLN A . n A 1 295 TRP 295 440 440 TRP TRP A . n A 1 296 ASP 296 441 441 ASP ASP A . n A 1 297 PRO 297 442 442 PRO PRO A . n A 1 298 ARG 298 443 443 ARG ARG A . n A 1 299 ASN 299 444 444 ASN ASN A . n A 1 300 LEU 300 445 445 LEU LEU A . n A 1 301 SER 301 446 446 SER SER A . n A 1 302 SER 302 447 447 SER SER A . n A 1 303 CYS 303 448 448 CYS CYS A . n A 1 304 PHE 304 449 449 PHE PHE A . n A 1 305 ASP 305 450 450 ASP ASP A . n A 1 306 LYS 306 451 451 LYS LYS A . n A 1 307 LEU 307 452 452 LEU LEU A . n A 1 308 LEU 308 453 453 LEU LEU A . n A 1 309 ALA 309 454 454 ALA ALA A . n A 1 310 PHE 310 455 455 PHE PHE A . n A 1 311 PHE 311 456 456 PHE PHE A . n A 1 312 LEU 312 457 457 LEU LEU A . n A 1 313 GLU 313 458 458 GLU GLU A . n A 1 314 CYS 314 459 459 CYS CYS A . n A 1 315 LEU 315 460 460 LEU LEU A . n A 1 316 ARG 316 461 461 ARG ARG A . n A 1 317 THR 317 462 462 THR THR A . n A 1 318 GLU 318 463 463 GLU GLU A . n A 1 319 LYS 319 464 464 LYS LYS A . n A 1 320 LEU 320 465 465 LEU LEU A . n A 1 321 ASP 321 466 466 ASP ASP A . n A 1 322 HIS 322 467 467 HIS HIS A . n A 1 323 TYR 323 468 468 TYR TYR A . n A 1 324 PHE 324 469 469 PHE PHE A . n A 1 325 ILE 325 470 470 ILE ILE A . n A 1 326 PRO 326 471 471 PRO PRO A . n A 1 327 LYS 327 472 472 LYS LYS A . n A 1 328 PHE 328 473 473 PHE PHE A . n A 1 329 ASN 329 474 474 ASN ASN A . n A 1 330 LEU 330 475 475 LEU LEU A . n A 1 331 PHE 331 476 476 PHE PHE A . n A 1 332 SER 332 477 477 SER SER A . n A 1 333 GLN 333 478 478 GLN GLN A . n A 1 334 GLU 334 479 479 GLU GLU A . n A 1 335 LEU 335 480 480 LEU LEU A . n A 1 336 ILE 336 481 481 ILE ILE A . n A 1 337 ASP 337 482 482 ASP ASP A . n A 1 338 ARG 338 483 483 ARG ARG A . n A 1 339 LYS 339 484 484 LYS LYS A . n A 1 340 SER 340 485 485 SER SER A . n A 1 341 LYS 341 486 486 LYS LYS A . n A 1 342 GLU 342 487 487 GLU GLU A . n A 1 343 PHE 343 488 488 PHE PHE A . n A 1 344 LEU 344 489 489 LEU LEU A . n A 1 345 SER 345 490 490 SER SER A . n A 1 346 LYS 346 491 491 LYS LYS A . n A 1 347 LYS 347 492 492 LYS LYS A . n A 1 348 ILE 348 493 493 ILE ILE A . n A 1 349 GLU 349 494 494 GLU GLU A . n A 1 350 TYR 350 495 495 TYR TYR A . n A 1 351 GLU 351 496 496 GLU GLU A . n A 1 352 ARG 352 497 497 ARG ARG A . n A 1 353 ASN 353 498 498 ASN ASN A . n A 1 354 ASN 354 499 499 ASN ASN A . n A 1 355 GLY 355 500 500 GLY GLY A . n A 1 356 PHE 356 501 501 PHE PHE A . n A 1 357 PRO 357 502 502 PRO PRO A . n A 1 358 ILE 358 503 503 ILE ILE A . n A 1 359 PHE 359 504 504 PHE PHE A . n A 1 360 ASP 360 505 505 ASP ASP A . n A 1 361 LYS 361 506 506 LYS LYS A . n A 1 362 LEU 362 507 ? ? ? A . n B 2 1 DA 1 1 1 DA DA D . n B 2 2 DA 2 2 2 DA DA D . n B 2 3 DA 3 3 3 DA DA D . n B 2 4 DT 4 4 4 DT DT D . n B 2 5 DT 5 5 5 DT DT D . n B 2 6 DG 6 6 6 DG DG D . n B 2 7 DC 7 7 7 DC DC D . n B 2 8 DC 8 8 8 DC DC D . n B 2 9 DG 9 9 9 DG DG D . n B 2 10 DA 10 10 10 DA DA D . n B 2 11 DA 11 11 11 DA DA D . n B 2 12 DG 12 12 12 DG DG D . n B 2 13 DA 13 13 13 DA DA D . n B 2 14 DC 14 14 14 DC DC D . n B 2 15 DG 15 15 15 DG DG D . n B 2 16 DA 16 16 ? ? ? D . n B 2 17 DA 17 17 ? ? ? D . n C 3 1 DT 1 1 ? ? ? E . n C 3 2 DT 2 2 ? ? ? E . n C 3 3 DT 3 3 ? ? ? E . n C 3 4 DC 4 4 4 DC DC E . n C 3 5 DG 5 5 5 DG DG E . n C 3 6 DT 6 6 6 DT DT E . n C 3 7 DC 7 7 7 DC DC E . n C 3 8 DT 8 8 8 DT DT E . n C 3 9 DT 9 9 9 DT DT E . n C 3 10 DC 10 10 10 DC DC E . n C 3 11 DG 11 11 11 DG DG E . n C 3 12 DG 12 12 12 DG DG E . n C 3 13 DC 13 13 13 DC DC E . n C 3 14 DA 14 14 14 DA DA E . n C 3 15 DA 15 15 15 DA DA E . n C 3 16 DT 16 16 16 DT DT E . n C 3 17 DT 17 17 17 DT DT E . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN 1 601 1 ZN ZN A . E 5 PO4 1 602 1 PO4 PO4 A . F 6 5GP 1 603 1 5GP DRG A . G 7 AMP 1 604 1 AMP DRG A . H 8 HOH 1 701 1 HOH HOH A . H 8 HOH 2 702 2 HOH HOH A . H 8 HOH 3 703 3 HOH HOH A . H 8 HOH 4 704 4 HOH HOH A . H 8 HOH 5 705 5 HOH HOH A . H 8 HOH 6 706 7 HOH HOH A . H 8 HOH 7 707 8 HOH HOH A . H 8 HOH 8 708 9 HOH HOH A . H 8 HOH 9 709 10 HOH HOH A . H 8 HOH 10 710 11 HOH HOH A . H 8 HOH 11 711 12 HOH HOH A . H 8 HOH 12 712 13 HOH HOH A . H 8 HOH 13 713 14 HOH HOH A . H 8 HOH 14 714 15 HOH HOH A . H 8 HOH 15 715 18 HOH HOH A . H 8 HOH 16 716 20 HOH HOH A . H 8 HOH 17 717 22 HOH HOH A . H 8 HOH 18 718 25 HOH HOH A . H 8 HOH 19 719 26 HOH HOH A . H 8 HOH 20 720 27 HOH HOH A . H 8 HOH 21 721 28 HOH HOH A . H 8 HOH 22 722 29 HOH HOH A . H 8 HOH 23 723 30 HOH HOH A . H 8 HOH 24 724 31 HOH HOH A . H 8 HOH 25 725 32 HOH HOH A . H 8 HOH 26 726 33 HOH HOH A . H 8 HOH 27 727 35 HOH HOH A . H 8 HOH 28 728 37 HOH HOH A . H 8 HOH 29 729 38 HOH HOH A . H 8 HOH 30 730 39 HOH HOH A . H 8 HOH 31 731 40 HOH HOH A . H 8 HOH 32 732 41 HOH HOH A . H 8 HOH 33 733 42 HOH HOH A . H 8 HOH 34 734 45 HOH HOH A . H 8 HOH 35 735 47 HOH HOH A . H 8 HOH 36 736 48 HOH HOH A . H 8 HOH 37 737 49 HOH HOH A . H 8 HOH 38 738 50 HOH HOH A . H 8 HOH 39 739 51 HOH HOH A . H 8 HOH 40 740 52 HOH HOH A . H 8 HOH 41 741 53 HOH HOH A . H 8 HOH 42 742 57 HOH HOH A . H 8 HOH 43 743 58 HOH HOH A . H 8 HOH 44 744 59 HOH HOH A . H 8 HOH 45 745 60 HOH HOH A . H 8 HOH 46 746 61 HOH HOH A . H 8 HOH 47 747 63 HOH HOH A . H 8 HOH 48 748 64 HOH HOH A . H 8 HOH 49 749 66 HOH HOH A . H 8 HOH 50 750 67 HOH HOH A . H 8 HOH 51 751 68 HOH HOH A . H 8 HOH 52 752 69 HOH HOH A . H 8 HOH 53 753 70 HOH HOH A . H 8 HOH 54 754 71 HOH HOH A . H 8 HOH 55 755 72 HOH HOH A . H 8 HOH 56 756 73 HOH HOH A . H 8 HOH 57 757 74 HOH HOH A . H 8 HOH 58 758 75 HOH HOH A . H 8 HOH 59 759 77 HOH HOH A . H 8 HOH 60 760 78 HOH HOH A . H 8 HOH 61 761 79 HOH HOH A . H 8 HOH 62 762 80 HOH HOH A . H 8 HOH 63 763 81 HOH HOH A . H 8 HOH 64 764 82 HOH HOH A . H 8 HOH 65 765 83 HOH HOH A . H 8 HOH 66 766 85 HOH HOH A . H 8 HOH 67 767 86 HOH HOH A . H 8 HOH 68 768 90 HOH HOH A . H 8 HOH 69 769 91 HOH HOH A . H 8 HOH 70 770 92 HOH HOH A . H 8 HOH 71 771 93 HOH HOH A . H 8 HOH 72 772 94 HOH HOH A . H 8 HOH 73 773 95 HOH HOH A . H 8 HOH 74 774 97 HOH HOH A . H 8 HOH 75 775 98 HOH HOH A . H 8 HOH 76 776 99 HOH HOH A . H 8 HOH 77 777 100 HOH HOH A . H 8 HOH 78 778 101 HOH HOH A . H 8 HOH 79 779 102 HOH HOH A . H 8 HOH 80 780 103 HOH HOH A . H 8 HOH 81 781 104 HOH HOH A . H 8 HOH 82 782 105 HOH HOH A . H 8 HOH 83 783 107 HOH HOH A . H 8 HOH 84 784 108 HOH HOH A . H 8 HOH 85 785 109 HOH HOH A . H 8 HOH 86 786 110 HOH HOH A . H 8 HOH 87 787 111 HOH HOH A . H 8 HOH 88 788 114 HOH HOH A . H 8 HOH 89 789 115 HOH HOH A . H 8 HOH 90 790 116 HOH HOH A . H 8 HOH 91 791 118 HOH HOH A . H 8 HOH 92 792 120 HOH HOH A . H 8 HOH 93 793 121 HOH HOH A . H 8 HOH 94 794 122 HOH HOH A . H 8 HOH 95 795 123 HOH HOH A . H 8 HOH 96 796 124 HOH HOH A . H 8 HOH 97 797 125 HOH HOH A . H 8 HOH 98 798 126 HOH HOH A . H 8 HOH 99 799 127 HOH HOH A . H 8 HOH 100 800 128 HOH HOH A . H 8 HOH 101 801 130 HOH HOH A . H 8 HOH 102 802 131 HOH HOH A . H 8 HOH 103 803 132 HOH HOH A . H 8 HOH 104 804 133 HOH HOH A . H 8 HOH 105 805 134 HOH HOH A . H 8 HOH 106 806 136 HOH HOH A . H 8 HOH 107 807 137 HOH HOH A . H 8 HOH 108 808 139 HOH HOH A . H 8 HOH 109 809 140 HOH HOH A . H 8 HOH 110 810 141 HOH HOH A . H 8 HOH 111 811 143 HOH HOH A . H 8 HOH 112 812 145 HOH HOH A . H 8 HOH 113 813 146 HOH HOH A . H 8 HOH 114 814 147 HOH HOH A . H 8 HOH 115 815 149 HOH HOH A . H 8 HOH 116 816 150 HOH HOH A . H 8 HOH 117 817 151 HOH HOH A . H 8 HOH 118 818 152 HOH HOH A . H 8 HOH 119 819 153 HOH HOH A . H 8 HOH 120 820 154 HOH HOH A . H 8 HOH 121 821 155 HOH HOH A . H 8 HOH 122 822 156 HOH HOH A . H 8 HOH 123 823 157 HOH HOH A . H 8 HOH 124 824 159 HOH HOH A . H 8 HOH 125 825 161 HOH HOH A . H 8 HOH 126 826 163 HOH HOH A . H 8 HOH 127 827 164 HOH HOH A . H 8 HOH 128 828 165 HOH HOH A . I 8 HOH 1 101 6 HOH HOH D . I 8 HOH 2 102 16 HOH HOH D . I 8 HOH 3 103 19 HOH HOH D . I 8 HOH 4 104 24 HOH HOH D . I 8 HOH 5 105 34 HOH HOH D . I 8 HOH 6 106 36 HOH HOH D . I 8 HOH 7 107 43 HOH HOH D . I 8 HOH 8 108 44 HOH HOH D . I 8 HOH 9 109 46 HOH HOH D . I 8 HOH 10 110 55 HOH HOH D . I 8 HOH 11 111 65 HOH HOH D . I 8 HOH 12 112 84 HOH HOH D . I 8 HOH 13 113 87 HOH HOH D . I 8 HOH 14 114 88 HOH HOH D . I 8 HOH 15 115 89 HOH HOH D . I 8 HOH 16 116 96 HOH HOH D . I 8 HOH 17 117 106 HOH HOH D . I 8 HOH 18 118 112 HOH HOH D . I 8 HOH 19 119 113 HOH HOH D . I 8 HOH 20 120 117 HOH HOH D . I 8 HOH 21 121 119 HOH HOH D . I 8 HOH 22 122 135 HOH HOH D . I 8 HOH 23 123 148 HOH HOH D . I 8 HOH 24 124 160 HOH HOH D . I 8 HOH 25 125 162 HOH HOH D . J 8 HOH 1 101 17 HOH HOH E . J 8 HOH 2 102 21 HOH HOH E . J 8 HOH 3 103 23 HOH HOH E . J 8 HOH 4 104 54 HOH HOH E . J 8 HOH 5 105 56 HOH HOH E . J 8 HOH 6 106 62 HOH HOH E . J 8 HOH 7 107 76 HOH HOH E . J 8 HOH 8 108 129 HOH HOH E . J 8 HOH 9 109 138 HOH HOH E . J 8 HOH 10 110 142 HOH HOH E . J 8 HOH 11 111 144 HOH HOH E . J 8 HOH 12 112 158 HOH HOH E . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 244 ? CG ? A ARG 99 CG 2 1 Y 1 A ARG 244 ? CD ? A ARG 99 CD 3 1 Y 1 A ARG 244 ? NE ? A ARG 99 NE 4 1 Y 1 A ARG 244 ? CZ ? A ARG 99 CZ 5 1 Y 1 A ARG 244 ? NH1 ? A ARG 99 NH1 6 1 Y 1 A ARG 244 ? NH2 ? A ARG 99 NH2 7 1 Y 1 E DC 4 ? P ? C DC 4 P 8 1 Y 1 E DC 4 ? OP1 ? C DC 4 OP1 9 1 Y 1 E DC 4 ? OP2 ? C DC 4 OP2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine: 1.8.1_1168)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _cell.entry_id 4K9B _cell.length_a 85.311 _cell.length_b 98.278 _cell.length_c 130.032 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4K9B _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4K9B _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.57 _exptl_crystal.density_percent_sol 52.23 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '0.1 M HEPES, 0.2 M MgCl2, 30% PEG300, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 200 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2013-03-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-E _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9792 # _reflns.entry_id 4K9B _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.26 _reflns.number_obs 25950 _reflns.number_all 25950 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.26 _reflns_shell.d_res_low 2.38 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4K9B _refine.ls_number_reflns_obs 25950 _refine.ls_number_reflns_all 25950 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 42.656 _refine.ls_d_res_high 2.260 _refine.ls_percent_reflns_obs 99.94 _refine.ls_R_factor_obs 0.1757 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1721 _refine.ls_R_factor_R_free 0.2175 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.71 _refine.ls_number_reflns_R_free 2000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.26 _refine.pdbx_overall_phase_error 22.77 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2929 _refine_hist.pdbx_number_atoms_nucleic_acid 589 _refine_hist.pdbx_number_atoms_ligand 51 _refine_hist.number_atoms_solvent 165 _refine_hist.number_atoms_total 3734 _refine_hist.d_res_high 2.260 _refine_hist.d_res_low 42.656 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.010 ? ? 3706 ? 'X-RAY DIFFRACTION' f_angle_d 1.933 ? ? 5114 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 20.378 ? ? 1465 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.149 ? ? 555 ? 'X-RAY DIFFRACTION' f_plane_restr 0.004 ? ? 539 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.2601 2.3166 1677 0.2452 100.00 0.3307 . . 140 . . . . 'X-RAY DIFFRACTION' . 2.3166 2.3793 1681 0.2249 100.00 0.2644 . . 141 . . . . 'X-RAY DIFFRACTION' . 2.3793 2.4493 1699 0.2023 100.00 0.2606 . . 141 . . . . 'X-RAY DIFFRACTION' . 2.4493 2.5283 1691 0.1881 100.00 0.2837 . . 141 . . . . 'X-RAY DIFFRACTION' . 2.5283 2.6187 1684 0.1848 100.00 0.2817 . . 141 . . . . 'X-RAY DIFFRACTION' . 2.6187 2.7235 1692 0.1962 100.00 0.2383 . . 141 . . . . 'X-RAY DIFFRACTION' . 2.7235 2.8474 1689 0.1950 100.00 0.2681 . . 141 . . . . 'X-RAY DIFFRACTION' . 2.8474 2.9975 1697 0.2000 100.00 0.2432 . . 142 . . . . 'X-RAY DIFFRACTION' . 2.9975 3.1853 1725 0.1995 100.00 0.2517 . . 144 . . . . 'X-RAY DIFFRACTION' . 3.1853 3.4311 1708 0.1692 100.00 0.2076 . . 143 . . . . 'X-RAY DIFFRACTION' . 3.4311 3.7762 1709 0.1565 100.00 0.1932 . . 142 . . . . 'X-RAY DIFFRACTION' . 3.7762 4.3222 1734 0.1507 100.00 0.1768 . . 145 . . . . 'X-RAY DIFFRACTION' . 4.3222 5.4437 1753 0.1387 100.00 0.1984 . . 146 . . . . 'X-RAY DIFFRACTION' . 5.4437 42.6631 1811 0.1753 99.00 0.2040 . . 152 . . . . 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 4K9B _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4K9B _struct.title 'Structure of Ternary Complex of cGAS with dsDNA and Bound c[G(2 ,5 )pA(3 ,5 )p]' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4K9B _struct_keywords.pdbx_keywords TRANSFERASE/DNA _struct_keywords.text 'nucleotidyltransferase fold, TRANSFERASE-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 7 ? H N N 8 ? I N N 8 ? J N N 8 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP CGAS_MOUSE Q8C6L5 1 ;PDKLKKVLDKLRLKRKDISEAAETVNKVVERLLRRMQKRESEFKGVEQLNTGSYYEHVKISAPNEFDVMFKLEVPRIELQ EYYETGAFYLVKFKRIPRGNPLSHFLEGEVLSATKMLSKFRKIIKEEVKEIKDIDVSVEKEKPGSPAVTLLIRNPEEISV DIILALESKGSWPISTKEGLPIQGWLGTKVRTNLRREPFYLVPKNAKDGNSFQGETWRLSFSHTEKYILNNHGIEKTCCE SSGAKCCRKECLKLMKYLLEQLKKEFQELDAFCSYHVKTAIFHMWTQDPQDSQWDPRNLSSCFDKLLAFFLECLRTEKLD HYFIPKFNLFSQELIDRKSKEFLSKKIEYERNNGFPIFDKL ; 147 ? 2 PDB 4K9B 4K9B 2 AAATTGCCGAAGACGAA ? ? 3 PDB 4K9B 4K9B 3 TTTCGTCTTCGGCAATT ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4K9B A 2 ? 362 ? Q8C6L5 147 ? 507 ? 147 507 2 2 4K9B D 1 ? 17 ? 4K9B 1 ? 17 ? 1 17 3 3 4K9B E 1 ? 17 ? 4K9B 1 ? 17 ? 1 17 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4K9B _struct_ref_seq_dif.mon_id SER _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q8C6L5 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 146 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3130 ? 1 MORE -26 ? 1 'SSA (A^2)' 21790 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 4 ? ARG A 13 ? LYS A 149 ARG A 158 1 ? 10 HELX_P HELX_P2 2 LYS A 15 ? GLN A 38 ? LYS A 160 GLN A 183 1 ? 24 HELX_P HELX_P3 3 SER A 113 ? GLU A 131 ? SER A 258 GLU A 276 1 ? 19 HELX_P HELX_P4 4 PRO A 174 ? LYS A 178 ? PRO A 319 LYS A 323 5 ? 5 HELX_P HELX_P5 5 GLY A 188 ? ARG A 197 ? GLY A 333 ARG A 342 1 ? 10 HELX_P HELX_P6 6 PHE A 222 ? ASN A 232 ? PHE A 367 ASN A 377 1 ? 11 HELX_P HELX_P7 7 CYS A 248 ? PHE A 267 ? CYS A 393 PHE A 412 1 ? 20 HELX_P HELX_P8 8 GLN A 268 ? ASP A 271 ? GLN A 413 ASP A 416 5 ? 4 HELX_P HELX_P9 9 CYS A 274 ? ASP A 289 ? CYS A 419 ASP A 434 1 ? 16 HELX_P HELX_P10 10 GLN A 291 ? ARG A 298 ? GLN A 436 ARG A 443 5 ? 8 HELX_P HELX_P11 11 ASN A 299 ? THR A 317 ? ASN A 444 THR A 462 1 ? 19 HELX_P HELX_P12 12 ASP A 337 ? ASN A 354 ? ASP A 482 ASN A 499 1 ? 18 HELX_P HELX_P13 13 PHE A 356 ? LYS A 361 ? PHE A 501 LYS A 506 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? F 5GP . "O2'" ? ? ? 1_555 G AMP . P ? ? A 5GP 603 A AMP 604 1_555 ? ? ? ? ? ? ? 1.575 ? ? covale2 covale one ? F 5GP . P ? ? ? 1_555 G AMP . "O3'" ? ? A 5GP 603 A AMP 604 1_555 ? ? ? ? ? ? ? 1.588 ? ? metalc1 metalc ? ? A HIS 233 NE2 ? ? ? 1_555 D ZN . ZN ? ? A HIS 378 A ZN 601 1_555 ? ? ? ? ? ? ? 2.126 ? ? metalc2 metalc ? ? A CYS 239 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 384 A ZN 601 1_555 ? ? ? ? ? ? ? 2.367 ? ? metalc3 metalc ? ? A CYS 240 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 385 A ZN 601 1_555 ? ? ? ? ? ? ? 2.370 ? ? metalc4 metalc ? ? A CYS 247 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 392 A ZN 601 1_555 ? ? ? ? ? ? ? 2.387 ? ? hydrog1 hydrog ? ? B DA 2 N1 ? ? ? 1_555 C DT 17 N3 ? ? D DA 2 E DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DA 2 N6 ? ? ? 1_555 C DT 17 O4 ? ? D DA 2 E DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DA 3 N1 ? ? ? 1_555 C DT 16 N3 ? ? D DA 3 E DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DA 3 N6 ? ? ? 1_555 C DT 16 O4 ? ? D DA 3 E DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DT 4 N3 ? ? ? 1_555 C DA 15 N1 ? ? D DT 4 E DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DT 4 O4 ? ? ? 1_555 C DA 15 N6 ? ? D DT 4 E DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DT 5 N3 ? ? ? 1_555 C DA 14 N1 ? ? D DT 5 E DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DT 5 O4 ? ? ? 1_555 C DA 14 N6 ? ? D DT 5 E DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 6 N1 ? ? ? 1_555 C DC 13 N3 ? ? D DG 6 E DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 6 N2 ? ? ? 1_555 C DC 13 O2 ? ? D DG 6 E DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DG 6 O6 ? ? ? 1_555 C DC 13 N4 ? ? D DG 6 E DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DC 7 N3 ? ? ? 1_555 C DG 12 N1 ? ? D DC 7 E DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DC 7 N4 ? ? ? 1_555 C DG 12 O6 ? ? D DC 7 E DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DC 7 O2 ? ? ? 1_555 C DG 12 N2 ? ? D DC 7 E DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DC 8 N3 ? ? ? 1_555 C DG 11 N1 ? ? D DC 8 E DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DC 8 N4 ? ? ? 1_555 C DG 11 O6 ? ? D DC 8 E DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DC 8 O2 ? ? ? 1_555 C DG 11 N2 ? ? D DC 8 E DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DG 9 N1 ? ? ? 1_555 C DC 10 N3 ? ? D DG 9 E DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DG 9 N2 ? ? ? 1_555 C DC 10 O2 ? ? D DG 9 E DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DG 9 O6 ? ? ? 1_555 C DC 10 N4 ? ? D DG 9 E DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DA 10 N1 ? ? ? 1_555 C DT 9 N3 ? ? D DA 10 E DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DA 10 N6 ? ? ? 1_555 C DT 9 O4 ? ? D DA 10 E DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DA 11 N1 ? ? ? 1_555 C DT 8 N3 ? ? D DA 11 E DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DA 11 N6 ? ? ? 1_555 C DT 8 O4 ? ? D DA 11 E DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DG 12 N1 ? ? ? 1_555 C DC 7 N3 ? ? D DG 12 E DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DG 12 N2 ? ? ? 1_555 C DC 7 O2 ? ? D DG 12 E DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DG 12 O6 ? ? ? 1_555 C DC 7 N4 ? ? D DG 12 E DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DA 13 N1 ? ? ? 1_555 C DT 6 N3 ? ? D DA 13 E DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DA 13 N6 ? ? ? 1_555 C DT 6 O4 ? ? D DA 13 E DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DC 14 N3 ? ? ? 1_555 C DG 5 N1 ? ? D DC 14 E DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DC 14 N4 ? ? ? 1_555 C DG 5 O6 ? ? D DC 14 E DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DC 14 O2 ? ? ? 1_555 C DG 5 N2 ? ? D DC 14 E DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B DG 15 N1 ? ? ? 1_555 C DC 4 N3 ? ? D DG 15 E DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B DG 15 N2 ? ? ? 1_555 C DC 4 O2 ? ? D DG 15 E DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B DG 15 O6 ? ? ? 1_555 C DC 4 N4 ? ? D DG 15 E DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 233 ? A HIS 378 ? 1_555 ZN ? D ZN . ? A ZN 601 ? 1_555 SG ? A CYS 239 ? A CYS 384 ? 1_555 113.7 ? 2 NE2 ? A HIS 233 ? A HIS 378 ? 1_555 ZN ? D ZN . ? A ZN 601 ? 1_555 SG ? A CYS 240 ? A CYS 385 ? 1_555 103.9 ? 3 SG ? A CYS 239 ? A CYS 384 ? 1_555 ZN ? D ZN . ? A ZN 601 ? 1_555 SG ? A CYS 240 ? A CYS 385 ? 1_555 131.0 ? 4 NE2 ? A HIS 233 ? A HIS 378 ? 1_555 ZN ? D ZN . ? A ZN 601 ? 1_555 SG ? A CYS 247 ? A CYS 392 ? 1_555 97.8 ? 5 SG ? A CYS 239 ? A CYS 384 ? 1_555 ZN ? D ZN . ? A ZN 601 ? 1_555 SG ? A CYS 247 ? A CYS 392 ? 1_555 100.0 ? 6 SG ? A CYS 240 ? A CYS 385 ? 1_555 ZN ? D ZN . ? A ZN 601 ? 1_555 SG ? A CYS 247 ? A CYS 392 ? 1_555 104.8 ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 LYS 39 A . ? LYS 184 A ARG 40 A ? ARG 185 A 1 2.90 2 ASN 155 A . ? ASN 300 A PRO 156 A ? PRO 301 A 1 2.65 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 5 ? C ? 2 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 48 ? THR A 52 ? GLU A 193 THR A 197 A 2 GLU A 66 ? GLU A 74 ? GLU A 211 GLU A 219 A 3 GLU A 158 ? SER A 169 ? GLU A 303 SER A 314 A 4 PHE A 200 ? VAL A 203 ? PHE A 345 VAL A 348 A 5 TRP A 218 ? SER A 221 ? TRP A 363 SER A 366 A 6 PHE A 89 ? PHE A 94 ? PHE A 234 PHE A 239 A 7 ILE A 78 ? GLU A 82 ? ILE A 223 GLU A 227 B 1 GLU A 48 ? THR A 52 ? GLU A 193 THR A 197 B 2 GLU A 66 ? GLU A 74 ? GLU A 211 GLU A 219 B 3 GLU A 158 ? SER A 169 ? GLU A 303 SER A 314 B 4 ALA A 148 ? ARG A 154 ? ALA A 293 ARG A 299 B 5 ASP A 136 ? VAL A 139 ? ASP A 281 VAL A 284 C 1 LEU A 107 ? GLU A 108 ? LEU A 252 GLU A 253 C 2 VAL A 111 ? LEU A 112 ? VAL A 256 LEU A 257 D 1 ALA A 207 ? ASP A 209 ? ALA A 352 ASP A 354 D 2 SER A 212 ? GLN A 214 ? SER A 357 GLN A 359 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 48 ? N GLU A 193 O LYS A 72 ? O LYS A 217 A 2 3 N LEU A 73 ? N LEU A 218 O ALA A 166 ? O ALA A 311 A 3 4 N LEU A 167 ? N LEU A 312 O LEU A 202 ? O LEU A 347 A 4 5 N VAL A 203 ? N VAL A 348 O ARG A 219 ? O ARG A 364 A 5 6 O TRP A 218 ? O TRP A 363 N TYR A 90 ? N TYR A 235 A 6 7 O LEU A 91 ? O LEU A 236 N GLN A 81 ? N GLN A 226 B 1 2 N GLU A 48 ? N GLU A 193 O LYS A 72 ? O LYS A 217 B 2 3 N LEU A 73 ? N LEU A 218 O ALA A 166 ? O ALA A 311 B 3 4 O VAL A 161 ? O VAL A 306 N LEU A 151 ? N LEU A 296 B 4 5 O LEU A 152 ? O LEU A 297 N SER A 138 ? N SER A 283 C 1 2 N GLU A 108 ? N GLU A 253 O VAL A 111 ? O VAL A 256 D 1 2 N ALA A 207 ? N ALA A 352 O GLN A 214 ? O GLN A 359 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 601 ? 4 'BINDING SITE FOR RESIDUE ZN A 601' AC2 Software A PO4 602 ? 7 'BINDING SITE FOR RESIDUE PO4 A 602' AC3 Software A 5GP 603 ? 9 'BINDING SITE FOR RESIDUE 5GP A 603' AC4 Software A AMP 604 ? 4 'BINDING SITE FOR RESIDUE AMP A 604' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HIS A 233 ? HIS A 378 . ? 1_555 ? 2 AC1 4 CYS A 239 ? CYS A 384 . ? 1_555 ? 3 AC1 4 CYS A 240 ? CYS A 385 . ? 1_555 ? 4 AC1 4 CYS A 247 ? CYS A 392 . ? 1_555 ? 5 AC2 7 HIS A 58 ? HIS A 203 . ? 1_555 ? 6 AC2 7 HOH H . ? HOH A 793 . ? 1_555 ? 7 AC2 7 HOH H . ? HOH A 813 . ? 1_555 ? 8 AC2 7 DG B 9 ? DG D 9 . ? 1_555 ? 9 AC2 7 DA B 10 ? DA D 10 . ? 1_555 ? 10 AC2 7 DC C 10 ? DC E 10 . ? 1_555 ? 11 AC2 7 DG C 11 ? DG E 11 . ? 1_555 ? 12 AC3 9 ASP A 68 ? ASP A 213 . ? 1_555 ? 13 AC3 9 LYS A 143 ? LYS A 288 . ? 1_555 ? 14 AC3 9 GLY A 145 ? GLY A 290 . ? 1_555 ? 15 AC3 9 SER A 146 ? SER A 291 . ? 1_555 ? 16 AC3 9 ASP A 162 ? ASP A 307 . ? 1_555 ? 17 AC3 9 ILE A 164 ? ILE A 309 . ? 1_555 ? 18 AC3 9 LYS A 205 ? LYS A 350 . ? 1_555 ? 19 AC3 9 ARG A 219 ? ARG A 364 . ? 1_555 ? 20 AC3 9 AMP G . ? AMP A 604 . ? 1_555 ? 21 AC4 4 ARG A 219 ? ARG A 364 . ? 1_555 ? 22 AC4 4 CYS A 274 ? CYS A 419 . ? 1_555 ? 23 AC4 4 TYR A 276 ? TYR A 421 . ? 1_555 ? 24 AC4 4 5GP F . ? 5GP A 603 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" D DC 8 ? ? "C1'" D DC 8 ? ? N1 D DC 8 ? ? 113.37 108.30 5.07 0.30 N 2 1 "O4'" E DG 11 ? ? "C1'" E DG 11 ? ? N9 E DG 11 ? ? 102.63 108.00 -5.37 0.70 N 3 1 N9 E DG 11 ? ? C4 E DG 11 ? ? C5 E DG 11 ? ? 102.95 105.40 -2.45 0.40 N 4 1 "O4'" E DA 14 ? ? "C1'" E DA 14 ? ? N9 E DA 14 ? ? 110.23 108.30 1.93 0.30 N 5 1 "O4'" E DT 17 ? ? "C1'" E DT 17 ? ? N1 E DT 17 ? ? 112.83 108.30 4.53 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 185 ? ? -136.28 -56.64 2 1 GLU A 186 ? ? -81.85 49.11 3 1 SER A 207 ? ? 70.12 -56.81 4 1 TYR A 229 ? ? 61.69 -126.91 5 1 TRP A 331 ? ? -121.47 -74.41 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 773 ? H HOH . 2 1 A HOH 780 ? H HOH . # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 183.0612 319.2490 170.7980 0.2758 0.2174 0.4399 -0.1183 0.0349 0.0460 2.0195 2.3563 7.2086 -0.9343 -0.5327 0.2088 0.2098 0.0680 0.3599 0.0408 0.0704 0.1284 -1.2731 -0.4562 -0.1651 'X-RAY DIFFRACTION' 2 ? refined 185.4193 309.0271 161.9726 0.2666 0.2079 0.3025 -0.0252 0.0125 0.0827 2.9524 4.9686 8.4600 -0.0803 -0.6621 4.4573 0.0310 0.2721 0.0498 -0.2216 -0.0609 -0.0002 -0.3478 -0.0139 0.0558 'X-RAY DIFFRACTION' 3 ? refined 192.6127 300.4706 161.5935 0.2706 0.3162 0.3019 0.0199 0.0798 -0.0061 1.5824 2.4522 1.8183 0.7993 -0.3594 -1.2562 0.0094 0.2206 -0.1306 -0.3684 -0.1725 -0.4640 0.0056 0.4248 0.1267 'X-RAY DIFFRACTION' 4 ? refined 193.0083 303.9679 185.8648 0.2133 0.3724 0.3081 -0.0781 0.0018 -0.0013 2.5560 2.4511 2.3960 -0.0220 0.1988 1.0005 0.0636 -0.4008 0.1234 0.1208 0.1184 -0.4699 -0.1471 0.6599 -0.1023 'X-RAY DIFFRACTION' 5 ? refined 169.0731 314.6758 168.6682 0.5561 0.3239 0.3809 0.0190 0.0784 0.0879 5.8287 3.7077 2.8707 0.4850 -1.0700 0.1939 0.2400 0.7437 0.4585 -0.5169 0.2444 -0.0075 -1.2916 -0.2889 -0.2178 'X-RAY DIFFRACTION' 6 ? refined 167.3470 313.1241 169.8164 0.3956 0.4533 0.3718 -0.0437 0.0421 0.1400 5.5874 6.9987 7.0864 0.4624 0.8949 1.9848 0.0509 0.1259 0.3902 0.2203 0.1612 0.5477 0.0921 -1.2245 -0.0986 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 149 through 182 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 183 through 219 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 220 through 376 ) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 377 through 506 ) ; 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? ;chain 'D' and (resid 1 through 15 ) ; 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? ;chain 'E' and (resid 4 through 17 ) ; # _pdbx_entry_details.entry_id 4K9B _pdbx_entry_details.nonpolymer_details ;GTP AND ATP WAS ADDED TO THE CRYSTALLIZATION CONDITION AND A C[G(2',5')PA(3',5')P LIGAND WAS OBSERVED WHICH HAS BEEN REPRESENTED AS G AND A WITH A 2' TO 5' AND A 3' TO 5' LINK ; _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 146 ? A SER 1 2 1 Y 1 A PRO 147 ? A PRO 2 3 1 Y 1 A ASP 148 ? A ASP 3 4 1 Y 1 A ARG 241 ? A ARG 96 5 1 Y 1 A ILE 242 ? A ILE 97 6 1 Y 1 A PRO 243 ? A PRO 98 7 1 Y 1 A LEU 507 ? A LEU 362 8 1 Y 1 D DA 16 ? B DA 16 9 1 Y 1 D DA 17 ? B DA 17 10 1 Y 1 E DT 1 ? C DT 1 11 1 Y 1 E DT 2 ? C DT 2 12 1 Y 1 E DT 3 ? C DT 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5GP P P N N 1 5GP O1P O N N 2 5GP O2P O N N 3 5GP O3P O N N 4 5GP "O5'" O N N 5 5GP "C5'" C N N 6 5GP "C4'" C N R 7 5GP "O4'" O N N 8 5GP "C3'" C N S 9 5GP "O3'" O N N 10 5GP "C2'" C N R 11 5GP "O2'" O N N 12 5GP "C1'" C N R 13 5GP N9 N Y N 14 5GP C8 C Y N 15 5GP N7 N Y N 16 5GP C5 C Y N 17 5GP C6 C N N 18 5GP O6 O N N 19 5GP N1 N N N 20 5GP C2 C N N 21 5GP N2 N N N 22 5GP N3 N N N 23 5GP C4 C Y N 24 5GP HOP2 H N N 25 5GP HOP3 H N N 26 5GP "H5'1" H N N 27 5GP "H5'2" H N N 28 5GP "H4'" H N N 29 5GP "H3'" H N N 30 5GP "HO3'" H N N 31 5GP "H2'" H N N 32 5GP "HO2'" H N N 33 5GP "H1'" H N N 34 5GP H8 H N N 35 5GP HN1 H N N 36 5GP HN21 H N N 37 5GP HN22 H N N 38 ALA N N N N 39 ALA CA C N S 40 ALA C C N N 41 ALA O O N N 42 ALA CB C N N 43 ALA OXT O N N 44 ALA H H N N 45 ALA H2 H N N 46 ALA HA H N N 47 ALA HB1 H N N 48 ALA HB2 H N N 49 ALA HB3 H N N 50 ALA HXT H N N 51 AMP P P N N 52 AMP O1P O N N 53 AMP O2P O N N 54 AMP O3P O N N 55 AMP "O5'" O N N 56 AMP "C5'" C N N 57 AMP "C4'" C N R 58 AMP "O4'" O N N 59 AMP "C3'" C N S 60 AMP "O3'" O N N 61 AMP "C2'" C N R 62 AMP "O2'" O N N 63 AMP "C1'" C N R 64 AMP N9 N Y N 65 AMP C8 C Y N 66 AMP N7 N Y N 67 AMP C5 C Y N 68 AMP C6 C Y N 69 AMP N6 N N N 70 AMP N1 N Y N 71 AMP C2 C Y N 72 AMP N3 N Y N 73 AMP C4 C Y N 74 AMP HOP2 H N N 75 AMP HOP3 H N N 76 AMP "H5'1" H N N 77 AMP "H5'2" H N N 78 AMP "H4'" H N N 79 AMP "H3'" H N N 80 AMP "HO3'" H N N 81 AMP "H2'" H N N 82 AMP "HO2'" H N N 83 AMP "H1'" H N N 84 AMP H8 H N N 85 AMP HN61 H N N 86 AMP HN62 H N N 87 AMP H2 H N N 88 ARG N N N N 89 ARG CA C N S 90 ARG C C N N 91 ARG O O N N 92 ARG CB C N N 93 ARG CG C N N 94 ARG CD C N N 95 ARG NE N N N 96 ARG CZ C N N 97 ARG NH1 N N N 98 ARG NH2 N N N 99 ARG OXT O N N 100 ARG H H N N 101 ARG H2 H N N 102 ARG HA H N N 103 ARG HB2 H N N 104 ARG HB3 H N N 105 ARG HG2 H N N 106 ARG HG3 H N N 107 ARG HD2 H N N 108 ARG HD3 H N N 109 ARG HE H N N 110 ARG HH11 H N N 111 ARG HH12 H N N 112 ARG HH21 H N N 113 ARG HH22 H N N 114 ARG HXT H N N 115 ASN N N N N 116 ASN CA C N S 117 ASN C C N N 118 ASN O O N N 119 ASN CB C N N 120 ASN CG C N N 121 ASN OD1 O N N 122 ASN ND2 N N N 123 ASN OXT O N N 124 ASN H H N N 125 ASN H2 H N N 126 ASN HA H N N 127 ASN HB2 H N N 128 ASN HB3 H N N 129 ASN HD21 H N N 130 ASN HD22 H N N 131 ASN HXT H N N 132 ASP N N N N 133 ASP CA C N S 134 ASP C C N N 135 ASP O O N N 136 ASP CB C N N 137 ASP CG C N N 138 ASP OD1 O N N 139 ASP OD2 O N N 140 ASP OXT O N N 141 ASP H H N N 142 ASP H2 H N N 143 ASP HA H N N 144 ASP HB2 H N N 145 ASP HB3 H N N 146 ASP HD2 H N N 147 ASP HXT H N N 148 CYS N N N N 149 CYS CA C N R 150 CYS C C N N 151 CYS O O N N 152 CYS CB C N N 153 CYS SG S N N 154 CYS OXT O N N 155 CYS H H N N 156 CYS H2 H N N 157 CYS HA H N N 158 CYS HB2 H N N 159 CYS HB3 H N N 160 CYS HG H N N 161 CYS HXT H N N 162 DA OP3 O N N 163 DA P P N N 164 DA OP1 O N N 165 DA OP2 O N N 166 DA "O5'" O N N 167 DA "C5'" C N N 168 DA "C4'" C N R 169 DA "O4'" O N N 170 DA "C3'" C N S 171 DA "O3'" O N N 172 DA "C2'" C N N 173 DA "C1'" C N R 174 DA N9 N Y N 175 DA C8 C Y N 176 DA N7 N Y N 177 DA C5 C Y N 178 DA C6 C Y N 179 DA N6 N N N 180 DA N1 N Y N 181 DA C2 C Y N 182 DA N3 N Y N 183 DA C4 C Y N 184 DA HOP3 H N N 185 DA HOP2 H N N 186 DA "H5'" H N N 187 DA "H5''" H N N 188 DA "H4'" H N N 189 DA "H3'" H N N 190 DA "HO3'" H N N 191 DA "H2'" H N N 192 DA "H2''" H N N 193 DA "H1'" H N N 194 DA H8 H N N 195 DA H61 H N N 196 DA H62 H N N 197 DA H2 H N N 198 DC OP3 O N N 199 DC P P N N 200 DC OP1 O N N 201 DC OP2 O N N 202 DC "O5'" O N N 203 DC "C5'" C N N 204 DC "C4'" C N R 205 DC "O4'" O N N 206 DC "C3'" C N S 207 DC "O3'" O N N 208 DC "C2'" C N N 209 DC "C1'" C N R 210 DC N1 N N N 211 DC C2 C N N 212 DC O2 O N N 213 DC N3 N N N 214 DC C4 C N N 215 DC N4 N N N 216 DC C5 C N N 217 DC C6 C N N 218 DC HOP3 H N N 219 DC HOP2 H N N 220 DC "H5'" H N N 221 DC "H5''" H N N 222 DC "H4'" H N N 223 DC "H3'" H N N 224 DC "HO3'" H N N 225 DC "H2'" H N N 226 DC "H2''" H N N 227 DC "H1'" H N N 228 DC H41 H N N 229 DC H42 H N N 230 DC H5 H N N 231 DC H6 H N N 232 DG OP3 O N N 233 DG P P N N 234 DG OP1 O N N 235 DG OP2 O N N 236 DG "O5'" O N N 237 DG "C5'" C N N 238 DG "C4'" C N R 239 DG "O4'" O N N 240 DG "C3'" C N S 241 DG "O3'" O N N 242 DG "C2'" C N N 243 DG "C1'" C N R 244 DG N9 N Y N 245 DG C8 C Y N 246 DG N7 N Y N 247 DG C5 C Y N 248 DG C6 C N N 249 DG O6 O N N 250 DG N1 N N N 251 DG C2 C N N 252 DG N2 N N N 253 DG N3 N N N 254 DG C4 C Y N 255 DG HOP3 H N N 256 DG HOP2 H N N 257 DG "H5'" H N N 258 DG "H5''" H N N 259 DG "H4'" H N N 260 DG "H3'" H N N 261 DG "HO3'" H N N 262 DG "H2'" H N N 263 DG "H2''" H N N 264 DG "H1'" H N N 265 DG H8 H N N 266 DG H1 H N N 267 DG H21 H N N 268 DG H22 H N N 269 DT OP3 O N N 270 DT P P N N 271 DT OP1 O N N 272 DT OP2 O N N 273 DT "O5'" O N N 274 DT "C5'" C N N 275 DT "C4'" C N R 276 DT "O4'" O N N 277 DT "C3'" C N S 278 DT "O3'" O N N 279 DT "C2'" C N N 280 DT "C1'" C N R 281 DT N1 N N N 282 DT C2 C N N 283 DT O2 O N N 284 DT N3 N N N 285 DT C4 C N N 286 DT O4 O N N 287 DT C5 C N N 288 DT C7 C N N 289 DT C6 C N N 290 DT HOP3 H N N 291 DT HOP2 H N N 292 DT "H5'" H N N 293 DT "H5''" H N N 294 DT "H4'" H N N 295 DT "H3'" H N N 296 DT "HO3'" H N N 297 DT "H2'" H N N 298 DT "H2''" H N N 299 DT "H1'" H N N 300 DT H3 H N N 301 DT H71 H N N 302 DT H72 H N N 303 DT H73 H N N 304 DT H6 H N N 305 GLN N N N N 306 GLN CA C N S 307 GLN C C N N 308 GLN O O N N 309 GLN CB C N N 310 GLN CG C N N 311 GLN CD C N N 312 GLN OE1 O N N 313 GLN NE2 N N N 314 GLN OXT O N N 315 GLN H H N N 316 GLN H2 H N N 317 GLN HA H N N 318 GLN HB2 H N N 319 GLN HB3 H N N 320 GLN HG2 H N N 321 GLN HG3 H N N 322 GLN HE21 H N N 323 GLN HE22 H N N 324 GLN HXT H N N 325 GLU N N N N 326 GLU CA C N S 327 GLU C C N N 328 GLU O O N N 329 GLU CB C N N 330 GLU CG C N N 331 GLU CD C N N 332 GLU OE1 O N N 333 GLU OE2 O N N 334 GLU OXT O N N 335 GLU H H N N 336 GLU H2 H N N 337 GLU HA H N N 338 GLU HB2 H N N 339 GLU HB3 H N N 340 GLU HG2 H N N 341 GLU HG3 H N N 342 GLU HE2 H N N 343 GLU HXT H N N 344 GLY N N N N 345 GLY CA C N N 346 GLY C C N N 347 GLY O O N N 348 GLY OXT O N N 349 GLY H H N N 350 GLY H2 H N N 351 GLY HA2 H N N 352 GLY HA3 H N N 353 GLY HXT H N N 354 HIS N N N N 355 HIS CA C N S 356 HIS C C N N 357 HIS O O N N 358 HIS CB C N N 359 HIS CG C Y N 360 HIS ND1 N Y N 361 HIS CD2 C Y N 362 HIS CE1 C Y N 363 HIS NE2 N Y N 364 HIS OXT O N N 365 HIS H H N N 366 HIS H2 H N N 367 HIS HA H N N 368 HIS HB2 H N N 369 HIS HB3 H N N 370 HIS HD1 H N N 371 HIS HD2 H N N 372 HIS HE1 H N N 373 HIS HE2 H N N 374 HIS HXT H N N 375 HOH O O N N 376 HOH H1 H N N 377 HOH H2 H N N 378 ILE N N N N 379 ILE CA C N S 380 ILE C C N N 381 ILE O O N N 382 ILE CB C N S 383 ILE CG1 C N N 384 ILE CG2 C N N 385 ILE CD1 C N N 386 ILE OXT O N N 387 ILE H H N N 388 ILE H2 H N N 389 ILE HA H N N 390 ILE HB H N N 391 ILE HG12 H N N 392 ILE HG13 H N N 393 ILE HG21 H N N 394 ILE HG22 H N N 395 ILE HG23 H N N 396 ILE HD11 H N N 397 ILE HD12 H N N 398 ILE HD13 H N N 399 ILE HXT H N N 400 LEU N N N N 401 LEU CA C N S 402 LEU C C N N 403 LEU O O N N 404 LEU CB C N N 405 LEU CG C N N 406 LEU CD1 C N N 407 LEU CD2 C N N 408 LEU OXT O N N 409 LEU H H N N 410 LEU H2 H N N 411 LEU HA H N N 412 LEU HB2 H N N 413 LEU HB3 H N N 414 LEU HG H N N 415 LEU HD11 H N N 416 LEU HD12 H N N 417 LEU HD13 H N N 418 LEU HD21 H N N 419 LEU HD22 H N N 420 LEU HD23 H N N 421 LEU HXT H N N 422 LYS N N N N 423 LYS CA C N S 424 LYS C C N N 425 LYS O O N N 426 LYS CB C N N 427 LYS CG C N N 428 LYS CD C N N 429 LYS CE C N N 430 LYS NZ N N N 431 LYS OXT O N N 432 LYS H H N N 433 LYS H2 H N N 434 LYS HA H N N 435 LYS HB2 H N N 436 LYS HB3 H N N 437 LYS HG2 H N N 438 LYS HG3 H N N 439 LYS HD2 H N N 440 LYS HD3 H N N 441 LYS HE2 H N N 442 LYS HE3 H N N 443 LYS HZ1 H N N 444 LYS HZ2 H N N 445 LYS HZ3 H N N 446 LYS HXT H N N 447 MET N N N N 448 MET CA C N S 449 MET C C N N 450 MET O O N N 451 MET CB C N N 452 MET CG C N N 453 MET SD S N N 454 MET CE C N N 455 MET OXT O N N 456 MET H H N N 457 MET H2 H N N 458 MET HA H N N 459 MET HB2 H N N 460 MET HB3 H N N 461 MET HG2 H N N 462 MET HG3 H N N 463 MET HE1 H N N 464 MET HE2 H N N 465 MET HE3 H N N 466 MET HXT H N N 467 PHE N N N N 468 PHE CA C N S 469 PHE C C N N 470 PHE O O N N 471 PHE CB C N N 472 PHE CG C Y N 473 PHE CD1 C Y N 474 PHE CD2 C Y N 475 PHE CE1 C Y N 476 PHE CE2 C Y N 477 PHE CZ C Y N 478 PHE OXT O N N 479 PHE H H N N 480 PHE H2 H N N 481 PHE HA H N N 482 PHE HB2 H N N 483 PHE HB3 H N N 484 PHE HD1 H N N 485 PHE HD2 H N N 486 PHE HE1 H N N 487 PHE HE2 H N N 488 PHE HZ H N N 489 PHE HXT H N N 490 PO4 P P N N 491 PO4 O1 O N N 492 PO4 O2 O N N 493 PO4 O3 O N N 494 PO4 O4 O N N 495 PRO N N N N 496 PRO CA C N S 497 PRO C C N N 498 PRO O O N N 499 PRO CB C N N 500 PRO CG C N N 501 PRO CD C N N 502 PRO OXT O N N 503 PRO H H N N 504 PRO HA H N N 505 PRO HB2 H N N 506 PRO HB3 H N N 507 PRO HG2 H N N 508 PRO HG3 H N N 509 PRO HD2 H N N 510 PRO HD3 H N N 511 PRO HXT H N N 512 SER N N N N 513 SER CA C N S 514 SER C C N N 515 SER O O N N 516 SER CB C N N 517 SER OG O N N 518 SER OXT O N N 519 SER H H N N 520 SER H2 H N N 521 SER HA H N N 522 SER HB2 H N N 523 SER HB3 H N N 524 SER HG H N N 525 SER HXT H N N 526 THR N N N N 527 THR CA C N S 528 THR C C N N 529 THR O O N N 530 THR CB C N R 531 THR OG1 O N N 532 THR CG2 C N N 533 THR OXT O N N 534 THR H H N N 535 THR H2 H N N 536 THR HA H N N 537 THR HB H N N 538 THR HG1 H N N 539 THR HG21 H N N 540 THR HG22 H N N 541 THR HG23 H N N 542 THR HXT H N N 543 TRP N N N N 544 TRP CA C N S 545 TRP C C N N 546 TRP O O N N 547 TRP CB C N N 548 TRP CG C Y N 549 TRP CD1 C Y N 550 TRP CD2 C Y N 551 TRP NE1 N Y N 552 TRP CE2 C Y N 553 TRP CE3 C Y N 554 TRP CZ2 C Y N 555 TRP CZ3 C Y N 556 TRP CH2 C Y N 557 TRP OXT O N N 558 TRP H H N N 559 TRP H2 H N N 560 TRP HA H N N 561 TRP HB2 H N N 562 TRP HB3 H N N 563 TRP HD1 H N N 564 TRP HE1 H N N 565 TRP HE3 H N N 566 TRP HZ2 H N N 567 TRP HZ3 H N N 568 TRP HH2 H N N 569 TRP HXT H N N 570 TYR N N N N 571 TYR CA C N S 572 TYR C C N N 573 TYR O O N N 574 TYR CB C N N 575 TYR CG C Y N 576 TYR CD1 C Y N 577 TYR CD2 C Y N 578 TYR CE1 C Y N 579 TYR CE2 C Y N 580 TYR CZ C Y N 581 TYR OH O N N 582 TYR OXT O N N 583 TYR H H N N 584 TYR H2 H N N 585 TYR HA H N N 586 TYR HB2 H N N 587 TYR HB3 H N N 588 TYR HD1 H N N 589 TYR HD2 H N N 590 TYR HE1 H N N 591 TYR HE2 H N N 592 TYR HH H N N 593 TYR HXT H N N 594 VAL N N N N 595 VAL CA C N S 596 VAL C C N N 597 VAL O O N N 598 VAL CB C N N 599 VAL CG1 C N N 600 VAL CG2 C N N 601 VAL OXT O N N 602 VAL H H N N 603 VAL H2 H N N 604 VAL HA H N N 605 VAL HB H N N 606 VAL HG11 H N N 607 VAL HG12 H N N 608 VAL HG13 H N N 609 VAL HG21 H N N 610 VAL HG22 H N N 611 VAL HG23 H N N 612 VAL HXT H N N 613 ZN ZN ZN N N 614 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5GP P O1P doub N N 1 5GP P O2P sing N N 2 5GP P O3P sing N N 3 5GP P "O5'" sing N N 4 5GP O2P HOP2 sing N N 5 5GP O3P HOP3 sing N N 6 5GP "O5'" "C5'" sing N N 7 5GP "C5'" "C4'" sing N N 8 5GP "C5'" "H5'1" sing N N 9 5GP "C5'" "H5'2" sing N N 10 5GP "C4'" "O4'" sing N N 11 5GP "C4'" "C3'" sing N N 12 5GP "C4'" "H4'" sing N N 13 5GP "O4'" "C1'" sing N N 14 5GP "C3'" "O3'" sing N N 15 5GP "C3'" "C2'" sing N N 16 5GP "C3'" "H3'" sing N N 17 5GP "O3'" "HO3'" sing N N 18 5GP "C2'" "O2'" sing N N 19 5GP "C2'" "C1'" sing N N 20 5GP "C2'" "H2'" sing N N 21 5GP "O2'" "HO2'" sing N N 22 5GP "C1'" N9 sing N N 23 5GP "C1'" "H1'" sing N N 24 5GP N9 C8 sing Y N 25 5GP N9 C4 sing Y N 26 5GP C8 N7 doub Y N 27 5GP C8 H8 sing N N 28 5GP N7 C5 sing Y N 29 5GP C5 C6 sing N N 30 5GP C5 C4 doub Y N 31 5GP C6 O6 doub N N 32 5GP C6 N1 sing N N 33 5GP N1 C2 sing N N 34 5GP N1 HN1 sing N N 35 5GP C2 N2 sing N N 36 5GP C2 N3 doub N N 37 5GP N2 HN21 sing N N 38 5GP N2 HN22 sing N N 39 5GP N3 C4 sing N N 40 ALA N CA sing N N 41 ALA N H sing N N 42 ALA N H2 sing N N 43 ALA CA C sing N N 44 ALA CA CB sing N N 45 ALA CA HA sing N N 46 ALA C O doub N N 47 ALA C OXT sing N N 48 ALA CB HB1 sing N N 49 ALA CB HB2 sing N N 50 ALA CB HB3 sing N N 51 ALA OXT HXT sing N N 52 AMP P O1P doub N N 53 AMP P O2P sing N N 54 AMP P O3P sing N N 55 AMP P "O5'" sing N N 56 AMP O2P HOP2 sing N N 57 AMP O3P HOP3 sing N N 58 AMP "O5'" "C5'" sing N N 59 AMP "C5'" "C4'" sing N N 60 AMP "C5'" "H5'1" sing N N 61 AMP "C5'" "H5'2" sing N N 62 AMP "C4'" "O4'" sing N N 63 AMP "C4'" "C3'" sing N N 64 AMP "C4'" "H4'" sing N N 65 AMP "O4'" "C1'" sing N N 66 AMP "C3'" "O3'" sing N N 67 AMP "C3'" "C2'" sing N N 68 AMP "C3'" "H3'" sing N N 69 AMP "O3'" "HO3'" sing N N 70 AMP "C2'" "O2'" sing N N 71 AMP "C2'" "C1'" sing N N 72 AMP "C2'" "H2'" sing N N 73 AMP "O2'" "HO2'" sing N N 74 AMP "C1'" N9 sing N N 75 AMP "C1'" "H1'" sing N N 76 AMP N9 C8 sing Y N 77 AMP N9 C4 sing Y N 78 AMP C8 N7 doub Y N 79 AMP C8 H8 sing N N 80 AMP N7 C5 sing Y N 81 AMP C5 C6 sing Y N 82 AMP C5 C4 doub Y N 83 AMP C6 N6 sing N N 84 AMP C6 N1 doub Y N 85 AMP N6 HN61 sing N N 86 AMP N6 HN62 sing N N 87 AMP N1 C2 sing Y N 88 AMP C2 N3 doub Y N 89 AMP C2 H2 sing N N 90 AMP N3 C4 sing Y N 91 ARG N CA sing N N 92 ARG N H sing N N 93 ARG N H2 sing N N 94 ARG CA C sing N N 95 ARG CA CB sing N N 96 ARG CA HA sing N N 97 ARG C O doub N N 98 ARG C OXT sing N N 99 ARG CB CG sing N N 100 ARG CB HB2 sing N N 101 ARG CB HB3 sing N N 102 ARG CG CD sing N N 103 ARG CG HG2 sing N N 104 ARG CG HG3 sing N N 105 ARG CD NE sing N N 106 ARG CD HD2 sing N N 107 ARG CD HD3 sing N N 108 ARG NE CZ sing N N 109 ARG NE HE sing N N 110 ARG CZ NH1 sing N N 111 ARG CZ NH2 doub N N 112 ARG NH1 HH11 sing N N 113 ARG NH1 HH12 sing N N 114 ARG NH2 HH21 sing N N 115 ARG NH2 HH22 sing N N 116 ARG OXT HXT sing N N 117 ASN N CA sing N N 118 ASN N H sing N N 119 ASN N H2 sing N N 120 ASN CA C sing N N 121 ASN CA CB sing N N 122 ASN CA HA sing N N 123 ASN C O doub N N 124 ASN C OXT sing N N 125 ASN CB CG sing N N 126 ASN CB HB2 sing N N 127 ASN CB HB3 sing N N 128 ASN CG OD1 doub N N 129 ASN CG ND2 sing N N 130 ASN ND2 HD21 sing N N 131 ASN ND2 HD22 sing N N 132 ASN OXT HXT sing N N 133 ASP N CA sing N N 134 ASP N H sing N N 135 ASP N H2 sing N N 136 ASP CA C sing N N 137 ASP CA CB sing N N 138 ASP CA HA sing N N 139 ASP C O doub N N 140 ASP C OXT sing N N 141 ASP CB CG sing N N 142 ASP CB HB2 sing N N 143 ASP CB HB3 sing N N 144 ASP CG OD1 doub N N 145 ASP CG OD2 sing N N 146 ASP OD2 HD2 sing N N 147 ASP OXT HXT sing N N 148 CYS N CA sing N N 149 CYS N H sing N N 150 CYS N H2 sing N N 151 CYS CA C sing N N 152 CYS CA CB sing N N 153 CYS CA HA sing N N 154 CYS C O doub N N 155 CYS C OXT sing N N 156 CYS CB SG sing N N 157 CYS CB HB2 sing N N 158 CYS CB HB3 sing N N 159 CYS SG HG sing N N 160 CYS OXT HXT sing N N 161 DA OP3 P sing N N 162 DA OP3 HOP3 sing N N 163 DA P OP1 doub N N 164 DA P OP2 sing N N 165 DA P "O5'" sing N N 166 DA OP2 HOP2 sing N N 167 DA "O5'" "C5'" sing N N 168 DA "C5'" "C4'" sing N N 169 DA "C5'" "H5'" sing N N 170 DA "C5'" "H5''" sing N N 171 DA "C4'" "O4'" sing N N 172 DA "C4'" "C3'" sing N N 173 DA "C4'" "H4'" sing N N 174 DA "O4'" "C1'" sing N N 175 DA "C3'" "O3'" sing N N 176 DA "C3'" "C2'" sing N N 177 DA "C3'" "H3'" sing N N 178 DA "O3'" "HO3'" sing N N 179 DA "C2'" "C1'" sing N N 180 DA "C2'" "H2'" sing N N 181 DA "C2'" "H2''" sing N N 182 DA "C1'" N9 sing N N 183 DA "C1'" "H1'" sing N N 184 DA N9 C8 sing Y N 185 DA N9 C4 sing Y N 186 DA C8 N7 doub Y N 187 DA C8 H8 sing N N 188 DA N7 C5 sing Y N 189 DA C5 C6 sing Y N 190 DA C5 C4 doub Y N 191 DA C6 N6 sing N N 192 DA C6 N1 doub Y N 193 DA N6 H61 sing N N 194 DA N6 H62 sing N N 195 DA N1 C2 sing Y N 196 DA C2 N3 doub Y N 197 DA C2 H2 sing N N 198 DA N3 C4 sing Y N 199 DC OP3 P sing N N 200 DC OP3 HOP3 sing N N 201 DC P OP1 doub N N 202 DC P OP2 sing N N 203 DC P "O5'" sing N N 204 DC OP2 HOP2 sing N N 205 DC "O5'" "C5'" sing N N 206 DC "C5'" "C4'" sing N N 207 DC "C5'" "H5'" sing N N 208 DC "C5'" "H5''" sing N N 209 DC "C4'" "O4'" sing N N 210 DC "C4'" "C3'" sing N N 211 DC "C4'" "H4'" sing N N 212 DC "O4'" "C1'" sing N N 213 DC "C3'" "O3'" sing N N 214 DC "C3'" "C2'" sing N N 215 DC "C3'" "H3'" sing N N 216 DC "O3'" "HO3'" sing N N 217 DC "C2'" "C1'" sing N N 218 DC "C2'" "H2'" sing N N 219 DC "C2'" "H2''" sing N N 220 DC "C1'" N1 sing N N 221 DC "C1'" "H1'" sing N N 222 DC N1 C2 sing N N 223 DC N1 C6 sing N N 224 DC C2 O2 doub N N 225 DC C2 N3 sing N N 226 DC N3 C4 doub N N 227 DC C4 N4 sing N N 228 DC C4 C5 sing N N 229 DC N4 H41 sing N N 230 DC N4 H42 sing N N 231 DC C5 C6 doub N N 232 DC C5 H5 sing N N 233 DC C6 H6 sing N N 234 DG OP3 P sing N N 235 DG OP3 HOP3 sing N N 236 DG P OP1 doub N N 237 DG P OP2 sing N N 238 DG P "O5'" sing N N 239 DG OP2 HOP2 sing N N 240 DG "O5'" "C5'" sing N N 241 DG "C5'" "C4'" sing N N 242 DG "C5'" "H5'" sing N N 243 DG "C5'" "H5''" sing N N 244 DG "C4'" "O4'" sing N N 245 DG "C4'" "C3'" sing N N 246 DG "C4'" "H4'" sing N N 247 DG "O4'" "C1'" sing N N 248 DG "C3'" "O3'" sing N N 249 DG "C3'" "C2'" sing N N 250 DG "C3'" "H3'" sing N N 251 DG "O3'" "HO3'" sing N N 252 DG "C2'" "C1'" sing N N 253 DG "C2'" "H2'" sing N N 254 DG "C2'" "H2''" sing N N 255 DG "C1'" N9 sing N N 256 DG "C1'" "H1'" sing N N 257 DG N9 C8 sing Y N 258 DG N9 C4 sing Y N 259 DG C8 N7 doub Y N 260 DG C8 H8 sing N N 261 DG N7 C5 sing Y N 262 DG C5 C6 sing N N 263 DG C5 C4 doub Y N 264 DG C6 O6 doub N N 265 DG C6 N1 sing N N 266 DG N1 C2 sing N N 267 DG N1 H1 sing N N 268 DG C2 N2 sing N N 269 DG C2 N3 doub N N 270 DG N2 H21 sing N N 271 DG N2 H22 sing N N 272 DG N3 C4 sing N N 273 DT OP3 P sing N N 274 DT OP3 HOP3 sing N N 275 DT P OP1 doub N N 276 DT P OP2 sing N N 277 DT P "O5'" sing N N 278 DT OP2 HOP2 sing N N 279 DT "O5'" "C5'" sing N N 280 DT "C5'" "C4'" sing N N 281 DT "C5'" "H5'" sing N N 282 DT "C5'" "H5''" sing N N 283 DT "C4'" "O4'" sing N N 284 DT "C4'" "C3'" sing N N 285 DT "C4'" "H4'" sing N N 286 DT "O4'" "C1'" sing N N 287 DT "C3'" "O3'" sing N N 288 DT "C3'" "C2'" sing N N 289 DT "C3'" "H3'" sing N N 290 DT "O3'" "HO3'" sing N N 291 DT "C2'" "C1'" sing N N 292 DT "C2'" "H2'" sing N N 293 DT "C2'" "H2''" sing N N 294 DT "C1'" N1 sing N N 295 DT "C1'" "H1'" sing N N 296 DT N1 C2 sing N N 297 DT N1 C6 sing N N 298 DT C2 O2 doub N N 299 DT C2 N3 sing N N 300 DT N3 C4 sing N N 301 DT N3 H3 sing N N 302 DT C4 O4 doub N N 303 DT C4 C5 sing N N 304 DT C5 C7 sing N N 305 DT C5 C6 doub N N 306 DT C7 H71 sing N N 307 DT C7 H72 sing N N 308 DT C7 H73 sing N N 309 DT C6 H6 sing N N 310 GLN N CA sing N N 311 GLN N H sing N N 312 GLN N H2 sing N N 313 GLN CA C sing N N 314 GLN CA CB sing N N 315 GLN CA HA sing N N 316 GLN C O doub N N 317 GLN C OXT sing N N 318 GLN CB CG sing N N 319 GLN CB HB2 sing N N 320 GLN CB HB3 sing N N 321 GLN CG CD sing N N 322 GLN CG HG2 sing N N 323 GLN CG HG3 sing N N 324 GLN CD OE1 doub N N 325 GLN CD NE2 sing N N 326 GLN NE2 HE21 sing N N 327 GLN NE2 HE22 sing N N 328 GLN OXT HXT sing N N 329 GLU N CA sing N N 330 GLU N H sing N N 331 GLU N H2 sing N N 332 GLU CA C sing N N 333 GLU CA CB sing N N 334 GLU CA HA sing N N 335 GLU C O doub N N 336 GLU C OXT sing N N 337 GLU CB CG sing N N 338 GLU CB HB2 sing N N 339 GLU CB HB3 sing N N 340 GLU CG CD sing N N 341 GLU CG HG2 sing N N 342 GLU CG HG3 sing N N 343 GLU CD OE1 doub N N 344 GLU CD OE2 sing N N 345 GLU OE2 HE2 sing N N 346 GLU OXT HXT sing N N 347 GLY N CA sing N N 348 GLY N H sing N N 349 GLY N H2 sing N N 350 GLY CA C sing N N 351 GLY CA HA2 sing N N 352 GLY CA HA3 sing N N 353 GLY C O doub N N 354 GLY C OXT sing N N 355 GLY OXT HXT sing N N 356 HIS N CA sing N N 357 HIS N H sing N N 358 HIS N H2 sing N N 359 HIS CA C sing N N 360 HIS CA CB sing N N 361 HIS CA HA sing N N 362 HIS C O doub N N 363 HIS C OXT sing N N 364 HIS CB CG sing N N 365 HIS CB HB2 sing N N 366 HIS CB HB3 sing N N 367 HIS CG ND1 sing Y N 368 HIS CG CD2 doub Y N 369 HIS ND1 CE1 doub Y N 370 HIS ND1 HD1 sing N N 371 HIS CD2 NE2 sing Y N 372 HIS CD2 HD2 sing N N 373 HIS CE1 NE2 sing Y N 374 HIS CE1 HE1 sing N N 375 HIS NE2 HE2 sing N N 376 HIS OXT HXT sing N N 377 HOH O H1 sing N N 378 HOH O H2 sing N N 379 ILE N CA sing N N 380 ILE N H sing N N 381 ILE N H2 sing N N 382 ILE CA C sing N N 383 ILE CA CB sing N N 384 ILE CA HA sing N N 385 ILE C O doub N N 386 ILE C OXT sing N N 387 ILE CB CG1 sing N N 388 ILE CB CG2 sing N N 389 ILE CB HB sing N N 390 ILE CG1 CD1 sing N N 391 ILE CG1 HG12 sing N N 392 ILE CG1 HG13 sing N N 393 ILE CG2 HG21 sing N N 394 ILE CG2 HG22 sing N N 395 ILE CG2 HG23 sing N N 396 ILE CD1 HD11 sing N N 397 ILE CD1 HD12 sing N N 398 ILE CD1 HD13 sing N N 399 ILE OXT HXT sing N N 400 LEU N CA sing N N 401 LEU N H sing N N 402 LEU N H2 sing N N 403 LEU CA C sing N N 404 LEU CA CB sing N N 405 LEU CA HA sing N N 406 LEU C O doub N N 407 LEU C OXT sing N N 408 LEU CB CG sing N N 409 LEU CB HB2 sing N N 410 LEU CB HB3 sing N N 411 LEU CG CD1 sing N N 412 LEU CG CD2 sing N N 413 LEU CG HG sing N N 414 LEU CD1 HD11 sing N N 415 LEU CD1 HD12 sing N N 416 LEU CD1 HD13 sing N N 417 LEU CD2 HD21 sing N N 418 LEU CD2 HD22 sing N N 419 LEU CD2 HD23 sing N N 420 LEU OXT HXT sing N N 421 LYS N CA sing N N 422 LYS N H sing N N 423 LYS N H2 sing N N 424 LYS CA C sing N N 425 LYS CA CB sing N N 426 LYS CA HA sing N N 427 LYS C O doub N N 428 LYS C OXT sing N N 429 LYS CB CG sing N N 430 LYS CB HB2 sing N N 431 LYS CB HB3 sing N N 432 LYS CG CD sing N N 433 LYS CG HG2 sing N N 434 LYS CG HG3 sing N N 435 LYS CD CE sing N N 436 LYS CD HD2 sing N N 437 LYS CD HD3 sing N N 438 LYS CE NZ sing N N 439 LYS CE HE2 sing N N 440 LYS CE HE3 sing N N 441 LYS NZ HZ1 sing N N 442 LYS NZ HZ2 sing N N 443 LYS NZ HZ3 sing N N 444 LYS OXT HXT sing N N 445 MET N CA sing N N 446 MET N H sing N N 447 MET N H2 sing N N 448 MET CA C sing N N 449 MET CA CB sing N N 450 MET CA HA sing N N 451 MET C O doub N N 452 MET C OXT sing N N 453 MET CB CG sing N N 454 MET CB HB2 sing N N 455 MET CB HB3 sing N N 456 MET CG SD sing N N 457 MET CG HG2 sing N N 458 MET CG HG3 sing N N 459 MET SD CE sing N N 460 MET CE HE1 sing N N 461 MET CE HE2 sing N N 462 MET CE HE3 sing N N 463 MET OXT HXT sing N N 464 PHE N CA sing N N 465 PHE N H sing N N 466 PHE N H2 sing N N 467 PHE CA C sing N N 468 PHE CA CB sing N N 469 PHE CA HA sing N N 470 PHE C O doub N N 471 PHE C OXT sing N N 472 PHE CB CG sing N N 473 PHE CB HB2 sing N N 474 PHE CB HB3 sing N N 475 PHE CG CD1 doub Y N 476 PHE CG CD2 sing Y N 477 PHE CD1 CE1 sing Y N 478 PHE CD1 HD1 sing N N 479 PHE CD2 CE2 doub Y N 480 PHE CD2 HD2 sing N N 481 PHE CE1 CZ doub Y N 482 PHE CE1 HE1 sing N N 483 PHE CE2 CZ sing Y N 484 PHE CE2 HE2 sing N N 485 PHE CZ HZ sing N N 486 PHE OXT HXT sing N N 487 PO4 P O1 doub N N 488 PO4 P O2 sing N N 489 PO4 P O3 sing N N 490 PO4 P O4 sing N N 491 PRO N CA sing N N 492 PRO N CD sing N N 493 PRO N H sing N N 494 PRO CA C sing N N 495 PRO CA CB sing N N 496 PRO CA HA sing N N 497 PRO C O doub N N 498 PRO C OXT sing N N 499 PRO CB CG sing N N 500 PRO CB HB2 sing N N 501 PRO CB HB3 sing N N 502 PRO CG CD sing N N 503 PRO CG HG2 sing N N 504 PRO CG HG3 sing N N 505 PRO CD HD2 sing N N 506 PRO CD HD3 sing N N 507 PRO OXT HXT sing N N 508 SER N CA sing N N 509 SER N H sing N N 510 SER N H2 sing N N 511 SER CA C sing N N 512 SER CA CB sing N N 513 SER CA HA sing N N 514 SER C O doub N N 515 SER C OXT sing N N 516 SER CB OG sing N N 517 SER CB HB2 sing N N 518 SER CB HB3 sing N N 519 SER OG HG sing N N 520 SER OXT HXT sing N N 521 THR N CA sing N N 522 THR N H sing N N 523 THR N H2 sing N N 524 THR CA C sing N N 525 THR CA CB sing N N 526 THR CA HA sing N N 527 THR C O doub N N 528 THR C OXT sing N N 529 THR CB OG1 sing N N 530 THR CB CG2 sing N N 531 THR CB HB sing N N 532 THR OG1 HG1 sing N N 533 THR CG2 HG21 sing N N 534 THR CG2 HG22 sing N N 535 THR CG2 HG23 sing N N 536 THR OXT HXT sing N N 537 TRP N CA sing N N 538 TRP N H sing N N 539 TRP N H2 sing N N 540 TRP CA C sing N N 541 TRP CA CB sing N N 542 TRP CA HA sing N N 543 TRP C O doub N N 544 TRP C OXT sing N N 545 TRP CB CG sing N N 546 TRP CB HB2 sing N N 547 TRP CB HB3 sing N N 548 TRP CG CD1 doub Y N 549 TRP CG CD2 sing Y N 550 TRP CD1 NE1 sing Y N 551 TRP CD1 HD1 sing N N 552 TRP CD2 CE2 doub Y N 553 TRP CD2 CE3 sing Y N 554 TRP NE1 CE2 sing Y N 555 TRP NE1 HE1 sing N N 556 TRP CE2 CZ2 sing Y N 557 TRP CE3 CZ3 doub Y N 558 TRP CE3 HE3 sing N N 559 TRP CZ2 CH2 doub Y N 560 TRP CZ2 HZ2 sing N N 561 TRP CZ3 CH2 sing Y N 562 TRP CZ3 HZ3 sing N N 563 TRP CH2 HH2 sing N N 564 TRP OXT HXT sing N N 565 TYR N CA sing N N 566 TYR N H sing N N 567 TYR N H2 sing N N 568 TYR CA C sing N N 569 TYR CA CB sing N N 570 TYR CA HA sing N N 571 TYR C O doub N N 572 TYR C OXT sing N N 573 TYR CB CG sing N N 574 TYR CB HB2 sing N N 575 TYR CB HB3 sing N N 576 TYR CG CD1 doub Y N 577 TYR CG CD2 sing Y N 578 TYR CD1 CE1 sing Y N 579 TYR CD1 HD1 sing N N 580 TYR CD2 CE2 doub Y N 581 TYR CD2 HD2 sing N N 582 TYR CE1 CZ doub Y N 583 TYR CE1 HE1 sing N N 584 TYR CE2 CZ sing Y N 585 TYR CE2 HE2 sing N N 586 TYR CZ OH sing N N 587 TYR OH HH sing N N 588 TYR OXT HXT sing N N 589 VAL N CA sing N N 590 VAL N H sing N N 591 VAL N H2 sing N N 592 VAL CA C sing N N 593 VAL CA CB sing N N 594 VAL CA HA sing N N 595 VAL C O doub N N 596 VAL C OXT sing N N 597 VAL CB CG1 sing N N 598 VAL CB CG2 sing N N 599 VAL CB HB sing N N 600 VAL CG1 HG11 sing N N 601 VAL CG1 HG12 sing N N 602 VAL CG1 HG13 sing N N 603 VAL CG2 HG21 sing N N 604 VAL CG2 HG22 sing N N 605 VAL CG2 HG23 sing N N 606 VAL OXT HXT sing N N 607 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4K9B 'double helix' 4K9B 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DA 2 1_555 C DT 17 1_555 0.350 -0.497 -0.261 -9.689 -18.354 -7.575 1 D_DA2:DT17_E D 2 ? E 17 ? 20 1 1 B DA 3 1_555 C DT 16 1_555 -0.240 -0.419 -0.019 -5.560 -13.395 -3.988 2 D_DA3:DT16_E D 3 ? E 16 ? 20 1 1 B DT 4 1_555 C DA 15 1_555 0.087 -0.132 0.127 -6.854 -10.601 -4.232 3 D_DT4:DA15_E D 4 ? E 15 ? 20 1 1 B DT 5 1_555 C DA 14 1_555 -0.338 -0.194 0.035 -14.290 -4.698 3.552 4 D_DT5:DA14_E D 5 ? E 14 ? 20 1 1 B DG 6 1_555 C DC 13 1_555 0.269 -0.266 0.191 -4.696 -9.294 7.583 5 D_DG6:DC13_E D 6 ? E 13 ? 19 1 1 B DC 7 1_555 C DG 12 1_555 -0.364 -0.086 -0.148 1.826 -7.125 4.941 6 D_DC7:DG12_E D 7 ? E 12 ? 19 1 1 B DC 8 1_555 C DG 11 1_555 -0.195 -0.169 -0.266 13.638 0.949 2.114 7 D_DC8:DG11_E D 8 ? E 11 ? 19 1 1 B DG 9 1_555 C DC 10 1_555 -0.238 -0.086 -0.394 3.836 -14.256 2.701 8 D_DG9:DC10_E D 9 ? E 10 ? 19 1 1 B DA 10 1_555 C DT 9 1_555 0.226 -0.133 -0.231 6.314 -6.711 0.123 9 D_DA10:DT9_E D 10 ? E 9 ? 20 1 1 B DA 11 1_555 C DT 8 1_555 0.667 -0.222 -0.302 6.932 -12.824 3.752 10 D_DA11:DT8_E D 11 ? E 8 ? 20 1 1 B DG 12 1_555 C DC 7 1_555 0.013 -0.035 0.074 0.418 -10.887 8.295 11 D_DG12:DC7_E D 12 ? E 7 ? 19 1 1 B DA 13 1_555 C DT 6 1_555 0.267 -0.040 0.014 2.394 -8.359 8.671 12 D_DA13:DT6_E D 13 ? E 6 ? 20 1 1 B DC 14 1_555 C DG 5 1_555 -0.035 -0.361 -0.178 9.765 -3.298 -2.608 13 D_DC14:DG5_E D 14 ? E 5 ? 19 1 1 B DG 15 1_555 C DC 4 1_555 0.787 -0.420 0.984 19.274 -17.324 -2.372 14 D_DG15:DC4_E D 15 ? E 4 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DA 2 1_555 C DT 17 1_555 B DA 3 1_555 C DT 16 1_555 -0.204 -0.235 3.236 -3.906 6.490 27.683 -1.918 -0.457 3.101 13.252 7.976 28.681 1 DD_DA2DA3:DT16DT17_EE D 2 ? E 17 ? D 3 ? E 16 ? 1 B DA 3 1_555 C DT 16 1_555 B DT 4 1_555 C DA 15 1_555 -0.404 -0.676 3.370 -0.468 -4.672 35.759 -0.401 0.584 3.433 -7.568 0.758 36.056 2 DD_DA3DT4:DA15DT16_EE D 3 ? E 16 ? D 4 ? E 15 ? 1 B DT 4 1_555 C DA 15 1_555 B DT 5 1_555 C DA 14 1_555 1.121 0.156 3.470 3.336 1.225 37.218 0.069 -1.276 3.557 1.915 -5.213 37.381 3 DD_DT4DT5:DA14DA15_EE D 4 ? E 15 ? D 5 ? E 14 ? 1 B DT 5 1_555 C DA 14 1_555 B DG 6 1_555 C DC 13 1_555 -0.292 1.028 3.212 -2.289 5.021 35.687 0.944 0.146 3.333 8.132 3.708 36.097 4 DD_DT5DG6:DC13DA14_EE D 5 ? E 14 ? D 6 ? E 13 ? 1 B DG 6 1_555 C DC 13 1_555 B DC 7 1_555 C DG 12 1_555 0.121 -0.210 3.123 3.247 8.472 24.478 -2.660 0.572 2.882 19.161 -7.343 26.081 5 DD_DG6DC7:DG12DC13_EE D 6 ? E 13 ? D 7 ? E 12 ? 1 B DC 7 1_555 C DG 12 1_555 B DC 8 1_555 C DG 11 1_555 0.161 0.280 3.168 0.066 12.367 26.404 -2.125 -0.305 2.996 25.379 -0.136 29.110 6 DD_DC7DC8:DG11DG12_EE D 7 ? E 12 ? D 8 ? E 11 ? 1 B DC 8 1_555 C DG 11 1_555 B DG 9 1_555 C DC 10 1_555 -0.493 0.921 3.695 -0.379 5.806 40.722 0.587 0.654 3.790 8.292 0.541 41.118 7 DD_DC8DG9:DC10DG11_EE D 8 ? E 11 ? D 9 ? E 10 ? 1 B DG 9 1_555 C DC 10 1_555 B DA 10 1_555 C DT 9 1_555 -0.366 0.358 3.155 -2.610 5.274 39.865 -0.061 0.244 3.192 7.685 3.803 40.279 8 DD_DG9DA10:DT9DC10_EE D 9 ? E 10 ? D 10 ? E 9 ? 1 B DA 10 1_555 C DT 9 1_555 B DA 11 1_555 C DT 8 1_555 0.692 0.254 3.400 -0.481 12.994 30.898 -1.826 -1.286 3.232 23.146 0.857 33.462 9 DD_DA10DA11:DT8DT9_EE D 10 ? E 9 ? D 11 ? E 8 ? 1 B DA 11 1_555 C DT 8 1_555 B DG 12 1_555 C DC 7 1_555 -0.564 0.162 3.330 -7.500 3.004 37.462 -0.144 -0.116 3.379 4.612 11.514 38.293 10 DD_DA11DG12:DC7DT8_EE D 11 ? E 8 ? D 12 ? E 7 ? 1 B DG 12 1_555 C DC 7 1_555 B DA 13 1_555 C DT 6 1_555 -0.322 -0.130 3.209 0.238 4.091 35.907 -0.775 0.551 3.173 6.609 -0.385 36.132 11 DD_DG12DA13:DT6DC7_EE D 12 ? E 7 ? D 13 ? E 6 ? 1 B DA 13 1_555 C DT 6 1_555 B DC 14 1_555 C DG 5 1_555 -0.394 -0.119 3.155 0.313 5.620 26.756 -1.594 0.909 3.061 11.976 -0.667 27.331 12 DD_DA13DC14:DG5DT6_EE D 13 ? E 6 ? D 14 ? E 5 ? 1 B DC 14 1_555 C DG 5 1_555 B DG 15 1_555 C DC 4 1_555 0.389 0.358 3.221 -7.298 2.547 38.853 0.236 -1.411 3.117 3.784 10.841 39.586 13 DD_DC14DG15:DC4DG5_EE D 14 ? E 5 ? D 15 ? E 4 ? # _atom_sites.entry_id 4K9B _atom_sites.fract_transf_matrix[1][1] 0.011722 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010175 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007690 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S ZN # loop_