HEADER TRANSFERASE/DNA 19-APR-13 4K9B TITLE STRUCTURE OF TERNARY COMPLEX OF CGAS WITH DSDNA AND BOUND C[G(2 ,5 ) TITLE 2 PA(3 ,5 )P] COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC GMP-AMP SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, UNP RESIDUES 147-507; COMPND 5 SYNONYM: CGAMP SYNTHASE, CGAS, M-CGAS, MAB-21 DOMAIN-CONTAINING COMPND 6 PROTEIN 1; COMPND 7 EC: 2.7.7.-; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA-F; COMPND 11 CHAIN: D; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA-R; COMPND 15 CHAIN: E; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MB21D1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 OTHER_DETAILS: THIS SEQUENCE WAS SYNTHESIZED BY REGULAR PROTOCOL; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: THIS SEQUENCE WAS SYNTHESIZED BY REGULAR PROTOCOL KEYWDS NUCLEOTIDYLTRANSFERASE FOLD, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.GAO,Y.WU,D.J.PATEL REVDAT 3 28-FEB-24 4K9B 1 REMARK SEQADV LINK REVDAT 2 28-AUG-13 4K9B 1 JRNL REVDAT 1 15-MAY-13 4K9B 0 JRNL AUTH P.GAO,M.ASCANO,Y.WU,W.BARCHET,B.L.GAFFNEY,T.ZILLINGER, JRNL AUTH 2 A.A.SERGANOV,Y.LIU,R.A.JONES,G.HARTMANN,T.TUSCHL,D.J.PATEL JRNL TITL CYCLIC [G(2',5')PA(3',5')P] IS THE METAZOAN SECOND MESSENGER JRNL TITL 2 PRODUCED BY DNA-ACTIVATED CYCLIC GMP-AMP SYNTHASE. JRNL REF CELL(CAMBRIDGE,MASS.) V. 153 1094 2013 JRNL REFN ISSN 0092-8674 JRNL PMID 23647843 JRNL DOI 10.1016/J.CELL.2013.04.046 REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 25950 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.710 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.6631 - 5.4437 0.99 1811 152 0.1753 0.2040 REMARK 3 2 5.4437 - 4.3222 1.00 1753 146 0.1387 0.1984 REMARK 3 3 4.3222 - 3.7762 1.00 1734 145 0.1507 0.1768 REMARK 3 4 3.7762 - 3.4311 1.00 1709 142 0.1565 0.1932 REMARK 3 5 3.4311 - 3.1853 1.00 1708 143 0.1692 0.2076 REMARK 3 6 3.1853 - 2.9975 1.00 1725 144 0.1995 0.2517 REMARK 3 7 2.9975 - 2.8474 1.00 1697 142 0.2000 0.2432 REMARK 3 8 2.8474 - 2.7235 1.00 1689 141 0.1950 0.2681 REMARK 3 9 2.7235 - 2.6187 1.00 1692 141 0.1962 0.2383 REMARK 3 10 2.6187 - 2.5283 1.00 1684 141 0.1848 0.2817 REMARK 3 11 2.5283 - 2.4493 1.00 1691 141 0.1881 0.2837 REMARK 3 12 2.4493 - 2.3793 1.00 1699 141 0.2023 0.2606 REMARK 3 13 2.3793 - 2.3166 1.00 1681 141 0.2249 0.2644 REMARK 3 14 2.3166 - 2.2601 1.00 1677 140 0.2452 0.3307 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3706 REMARK 3 ANGLE : 1.933 5114 REMARK 3 CHIRALITY : 0.149 555 REMARK 3 PLANARITY : 0.004 539 REMARK 3 DIHEDRAL : 20.378 1465 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 149 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): 183.0612 319.2490 170.7980 REMARK 3 T TENSOR REMARK 3 T11: 0.2758 T22: 0.2174 REMARK 3 T33: 0.4399 T12: -0.1183 REMARK 3 T13: 0.0349 T23: 0.0460 REMARK 3 L TENSOR REMARK 3 L11: 2.0195 L22: 2.3563 REMARK 3 L33: 7.2086 L12: -0.9343 REMARK 3 L13: -0.5327 L23: 0.2088 REMARK 3 S TENSOR REMARK 3 S11: 0.2098 S12: 0.0680 S13: 0.3599 REMARK 3 S21: 0.0408 S22: 0.0704 S23: 0.1284 REMARK 3 S31: -1.2731 S32: -0.4562 S33: -0.1651 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 219 ) REMARK 3 ORIGIN FOR THE GROUP (A): 185.4193 309.0271 161.9726 REMARK 3 T TENSOR REMARK 3 T11: 0.2666 T22: 0.2079 REMARK 3 T33: 0.3025 T12: -0.0252 REMARK 3 T13: 0.0125 T23: 0.0827 REMARK 3 L TENSOR REMARK 3 L11: 2.9524 L22: 4.9686 REMARK 3 L33: 8.4600 L12: -0.0803 REMARK 3 L13: -0.6621 L23: 4.4573 REMARK 3 S TENSOR REMARK 3 S11: 0.0310 S12: 0.2721 S13: 0.0498 REMARK 3 S21: -0.2216 S22: -0.0609 S23: -0.0002 REMARK 3 S31: -0.3478 S32: -0.0139 S33: 0.0558 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 220 THROUGH 376 ) REMARK 3 ORIGIN FOR THE GROUP (A): 192.6127 300.4706 161.5935 REMARK 3 T TENSOR REMARK 3 T11: 0.2706 T22: 0.3162 REMARK 3 T33: 0.3019 T12: 0.0199 REMARK 3 T13: 0.0798 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 1.5824 L22: 2.4522 REMARK 3 L33: 1.8183 L12: 0.7993 REMARK 3 L13: -0.3594 L23: -1.2562 REMARK 3 S TENSOR REMARK 3 S11: 0.0094 S12: 0.2206 S13: -0.1306 REMARK 3 S21: -0.3684 S22: -0.1725 S23: -0.4640 REMARK 3 S31: 0.0056 S32: 0.4248 S33: 0.1267 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 377 THROUGH 506 ) REMARK 3 ORIGIN FOR THE GROUP (A): 193.0083 303.9679 185.8648 REMARK 3 T TENSOR REMARK 3 T11: 0.2133 T22: 0.3724 REMARK 3 T33: 0.3081 T12: -0.0781 REMARK 3 T13: 0.0018 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 2.5560 L22: 2.4511 REMARK 3 L33: 2.3960 L12: -0.0220 REMARK 3 L13: 0.1988 L23: 1.0005 REMARK 3 S TENSOR REMARK 3 S11: 0.0636 S12: -0.4008 S13: 0.1234 REMARK 3 S21: 0.1208 S22: 0.1184 S23: -0.4699 REMARK 3 S31: -0.1471 S32: 0.6599 S33: -0.1023 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 169.0731 314.6758 168.6682 REMARK 3 T TENSOR REMARK 3 T11: 0.5561 T22: 0.3239 REMARK 3 T33: 0.3809 T12: 0.0190 REMARK 3 T13: 0.0784 T23: 0.0879 REMARK 3 L TENSOR REMARK 3 L11: 5.8287 L22: 3.7077 REMARK 3 L33: 2.8707 L12: 0.4850 REMARK 3 L13: -1.0700 L23: 0.1939 REMARK 3 S TENSOR REMARK 3 S11: 0.2400 S12: 0.7437 S13: 0.4585 REMARK 3 S21: -0.5169 S22: 0.2444 S23: -0.0075 REMARK 3 S31: -1.2916 S32: -0.2889 S33: -0.2178 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 4 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 167.3470 313.1241 169.8164 REMARK 3 T TENSOR REMARK 3 T11: 0.3956 T22: 0.4533 REMARK 3 T33: 0.3718 T12: -0.0437 REMARK 3 T13: 0.0421 T23: 0.1400 REMARK 3 L TENSOR REMARK 3 L11: 5.5874 L22: 6.9987 REMARK 3 L33: 7.0864 L12: 0.4624 REMARK 3 L13: 0.8949 L23: 1.9848 REMARK 3 S TENSOR REMARK 3 S11: 0.0509 S12: 0.1259 S13: 0.3902 REMARK 3 S21: 0.2203 S22: 0.1612 S23: 0.5477 REMARK 3 S31: 0.0921 S32: -1.2245 S33: -0.0986 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4K9B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000079053. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25950 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.260 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 0.2 M MGCL2, 30% PEG300, REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.65550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.13900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.01600 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.65550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.13900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.01600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.65550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.13900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.01600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.65550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.13900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.01600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 773 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 780 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 146 REMARK 465 PRO A 147 REMARK 465 ASP A 148 REMARK 465 ARG A 241 REMARK 465 ILE A 242 REMARK 465 PRO A 243 REMARK 465 LEU A 507 REMARK 465 DA D 16 REMARK 465 DA D 17 REMARK 465 DT E 1 REMARK 465 DT E 2 REMARK 465 DT E 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 244 CG CD NE CZ NH1 NH2 REMARK 470 DC E 4 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC D 8 O4' - C1' - N1 ANGL. DEV. = 5.1 DEGREES REMARK 500 DG E 11 O4' - C1' - N9 ANGL. DEV. = -5.4 DEGREES REMARK 500 DG E 11 N9 - C4 - C5 ANGL. DEV. = -2.5 DEGREES REMARK 500 DA E 14 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT E 17 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 185 -56.64 -136.28 REMARK 500 GLU A 186 49.11 -81.85 REMARK 500 SER A 207 -56.81 70.12 REMARK 500 TYR A 229 -126.91 61.69 REMARK 500 TRP A 331 -74.41 -121.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 GTP AND ATP WAS ADDED TO THE CRYSTALLIZATION CONDITION AND A C[G(2', REMARK 600 5')PA(3',5')P LIGAND WAS OBSERVED WHICH HAS BEEN REPRESENTED AS G REMARK 600 AND A WITH A 2' TO 5' AND A 3' TO 5' LINK REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 378 NE2 REMARK 620 2 CYS A 384 SG 113.7 REMARK 620 3 CYS A 385 SG 103.9 131.0 REMARK 620 4 CYS A 392 SG 97.8 100.0 104.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE G A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE A A 604 DBREF 4K9B A 147 507 UNP Q8C6L5 CGAS_MOUSE 147 507 DBREF 4K9B D 1 17 PDB 4K9B 4K9B 1 17 DBREF 4K9B E 1 17 PDB 4K9B 4K9B 1 17 SEQADV 4K9B SER A 146 UNP Q8C6L5 EXPRESSION TAG SEQRES 1 A 362 SER PRO ASP LYS LEU LYS LYS VAL LEU ASP LYS LEU ARG SEQRES 2 A 362 LEU LYS ARG LYS ASP ILE SER GLU ALA ALA GLU THR VAL SEQRES 3 A 362 ASN LYS VAL VAL GLU ARG LEU LEU ARG ARG MET GLN LYS SEQRES 4 A 362 ARG GLU SER GLU PHE LYS GLY VAL GLU GLN LEU ASN THR SEQRES 5 A 362 GLY SER TYR TYR GLU HIS VAL LYS ILE SER ALA PRO ASN SEQRES 6 A 362 GLU PHE ASP VAL MET PHE LYS LEU GLU VAL PRO ARG ILE SEQRES 7 A 362 GLU LEU GLN GLU TYR TYR GLU THR GLY ALA PHE TYR LEU SEQRES 8 A 362 VAL LYS PHE LYS ARG ILE PRO ARG GLY ASN PRO LEU SER SEQRES 9 A 362 HIS PHE LEU GLU GLY GLU VAL LEU SER ALA THR LYS MET SEQRES 10 A 362 LEU SER LYS PHE ARG LYS ILE ILE LYS GLU GLU VAL LYS SEQRES 11 A 362 GLU ILE LYS ASP ILE ASP VAL SER VAL GLU LYS GLU LYS SEQRES 12 A 362 PRO GLY SER PRO ALA VAL THR LEU LEU ILE ARG ASN PRO SEQRES 13 A 362 GLU GLU ILE SER VAL ASP ILE ILE LEU ALA LEU GLU SER SEQRES 14 A 362 LYS GLY SER TRP PRO ILE SER THR LYS GLU GLY LEU PRO SEQRES 15 A 362 ILE GLN GLY TRP LEU GLY THR LYS VAL ARG THR ASN LEU SEQRES 16 A 362 ARG ARG GLU PRO PHE TYR LEU VAL PRO LYS ASN ALA LYS SEQRES 17 A 362 ASP GLY ASN SER PHE GLN GLY GLU THR TRP ARG LEU SER SEQRES 18 A 362 PHE SER HIS THR GLU LYS TYR ILE LEU ASN ASN HIS GLY SEQRES 19 A 362 ILE GLU LYS THR CYS CYS GLU SER SER GLY ALA LYS CYS SEQRES 20 A 362 CYS ARG LYS GLU CYS LEU LYS LEU MET LYS TYR LEU LEU SEQRES 21 A 362 GLU GLN LEU LYS LYS GLU PHE GLN GLU LEU ASP ALA PHE SEQRES 22 A 362 CYS SER TYR HIS VAL LYS THR ALA ILE PHE HIS MET TRP SEQRES 23 A 362 THR GLN ASP PRO GLN ASP SER GLN TRP ASP PRO ARG ASN SEQRES 24 A 362 LEU SER SER CYS PHE ASP LYS LEU LEU ALA PHE PHE LEU SEQRES 25 A 362 GLU CYS LEU ARG THR GLU LYS LEU ASP HIS TYR PHE ILE SEQRES 26 A 362 PRO LYS PHE ASN LEU PHE SER GLN GLU LEU ILE ASP ARG SEQRES 27 A 362 LYS SER LYS GLU PHE LEU SER LYS LYS ILE GLU TYR GLU SEQRES 28 A 362 ARG ASN ASN GLY PHE PRO ILE PHE ASP LYS LEU SEQRES 1 D 17 DA DA DA DT DT DG DC DC DG DA DA DG DA SEQRES 2 D 17 DC DG DA DA SEQRES 1 E 17 DT DT DT DC DG DT DC DT DT DC DG DG DC SEQRES 2 E 17 DA DA DT DT HET ZN A 601 1 HET PO4 A 602 5 HET G A 603 23 HET A A 604 22 HETNAM ZN ZINC ION HETNAM PO4 PHOSPHATE ION HETNAM G GUANOSINE-5'-MONOPHOSPHATE HETNAM A ADENOSINE-5'-MONOPHOSPHATE FORMUL 4 ZN ZN 2+ FORMUL 5 PO4 O4 P 3- FORMUL 6 G C10 H14 N5 O8 P FORMUL 7 A C10 H14 N5 O7 P FORMUL 8 HOH *165(H2 O) HELIX 1 1 LYS A 149 ARG A 158 1 10 HELIX 2 2 LYS A 160 GLN A 183 1 24 HELIX 3 3 SER A 258 GLU A 276 1 19 HELIX 4 4 PRO A 319 LYS A 323 5 5 HELIX 5 5 GLY A 333 ARG A 342 1 10 HELIX 6 6 PHE A 367 ASN A 377 1 11 HELIX 7 7 CYS A 393 PHE A 412 1 20 HELIX 8 8 GLN A 413 ASP A 416 5 4 HELIX 9 9 CYS A 419 ASP A 434 1 16 HELIX 10 10 GLN A 436 ARG A 443 5 8 HELIX 11 11 ASN A 444 THR A 462 1 19 HELIX 12 12 ASP A 482 ASN A 499 1 18 HELIX 13 13 PHE A 501 LYS A 506 5 6 SHEET 1 A 7 GLU A 193 THR A 197 0 SHEET 2 A 7 GLU A 211 GLU A 219 -1 O LYS A 217 N GLU A 193 SHEET 3 A 7 GLU A 303 SER A 314 1 O ALA A 311 N LEU A 218 SHEET 4 A 7 PHE A 345 VAL A 348 -1 O LEU A 347 N LEU A 312 SHEET 5 A 7 TRP A 363 SER A 366 -1 O ARG A 364 N VAL A 348 SHEET 6 A 7 PHE A 234 PHE A 239 -1 N TYR A 235 O TRP A 363 SHEET 7 A 7 ILE A 223 GLU A 227 -1 N GLN A 226 O LEU A 236 SHEET 1 B 5 GLU A 193 THR A 197 0 SHEET 2 B 5 GLU A 211 GLU A 219 -1 O LYS A 217 N GLU A 193 SHEET 3 B 5 GLU A 303 SER A 314 1 O ALA A 311 N LEU A 218 SHEET 4 B 5 ALA A 293 ARG A 299 -1 N LEU A 296 O VAL A 306 SHEET 5 B 5 ASP A 281 VAL A 284 -1 N SER A 283 O LEU A 297 SHEET 1 C 2 LEU A 252 GLU A 253 0 SHEET 2 C 2 VAL A 256 LEU A 257 -1 O VAL A 256 N GLU A 253 SHEET 1 D 2 ALA A 352 ASP A 354 0 SHEET 2 D 2 SER A 357 GLN A 359 -1 O GLN A 359 N ALA A 352 LINK O2' G A 603 P A A 604 1555 1555 1.58 LINK P G A 603 O3' A A 604 1555 1555 1.59 LINK NE2 HIS A 378 ZN ZN A 601 1555 1555 2.13 LINK SG CYS A 384 ZN ZN A 601 1555 1555 2.37 LINK SG CYS A 385 ZN ZN A 601 1555 1555 2.37 LINK SG CYS A 392 ZN ZN A 601 1555 1555 2.39 CISPEP 1 LYS A 184 ARG A 185 0 2.90 CISPEP 2 ASN A 300 PRO A 301 0 2.65 SITE 1 AC1 4 HIS A 378 CYS A 384 CYS A 385 CYS A 392 SITE 1 AC2 7 HIS A 203 HOH A 793 HOH A 813 DG D 9 SITE 2 AC2 7 DA D 10 DC E 10 DG E 11 SITE 1 AC3 9 ASP A 213 LYS A 288 GLY A 290 SER A 291 SITE 2 AC3 9 ASP A 307 ILE A 309 LYS A 350 ARG A 364 SITE 3 AC3 9 A A 604 SITE 1 AC4 4 ARG A 364 CYS A 419 TYR A 421 G A 603 CRYST1 85.311 98.278 130.032 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011722 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010175 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007690 0.00000