HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 21-APR-13 4K9U TITLE COMPLEX OF HUMAN CYP3A4 WITH A DESOXYRITONAVIR ANALOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450 3A4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1,8-CINEOLE 2-EXO-MONOOXYGENASE, ALBENDAZOLE MONOOXYGENASE, COMPND 5 ALBENDAZOLE SULFOXIDASE, CYPIIIA3, CYPIIIA4, CYTOCHROME P450 3A3, COMPND 6 CYTOCHROME P450 HLP, CYTOCHROME P450 NF-25, CYTOCHROME P450-PCN1, COMPND 7 NIFEDIPINE OXIDASE, QUININE 3-MONOOXYGENASE, TAUROCHENODEOXYCHOLATE COMPND 8 6-ALPHA-HYDROXYLASE; COMPND 9 EC: 1.14.13.-, 1.14.13.157, 1.14.13.32, 1.14.13.67, 1.14.13.97; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 STRAIN: HUMAN; SOURCE 6 GENE: CYP3A3, CYP3A4; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PCWORI KEYWDS CYTOCHROME P450 3A4, ALPHA-BETA PROTEIN, CYTOCHROME P450 FOLD, KEYWDS 2 MONOOXYGENASE, CYTOCHROME P450 REDUCTASE, ENDOPLASMIC RETICULUM, KEYWDS 3 OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR I.F.SEVRIOUKOVA,T.L.POULOS REVDAT 6 20-SEP-23 4K9U 1 REMARK SEQADV REVDAT 5 25-OCT-17 4K9U 1 REMARK REVDAT 4 29-OCT-14 4K9U 1 AUTHOR REVDAT 3 17-JUL-13 4K9U 1 JRNL REVDAT 2 26-JUN-13 4K9U 1 JRNL REVDAT 1 19-JUN-13 4K9U 0 JRNL AUTH I.F.SEVRIOUKOVA,T.L.POULOS JRNL TITL DISSECTING CYTOCHROME P450 3A4-LIGAND INTERACTIONS USING JRNL TITL 2 RITONAVIR ANALOGUES. JRNL REF BIOCHEMISTRY V. 52 4474 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 23746300 JRNL DOI 10.1021/BI4005396 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 11312 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 572 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 763 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 30 REMARK 3 BIN FREE R VALUE : 0.3690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3613 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 117 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 99.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.467 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.395 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 45.505 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3834 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5200 ; 2.020 ; 2.025 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 447 ; 6.410 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;37.179 ;24.038 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 677 ;20.528 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;20.098 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 578 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2852 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 496 REMARK 3 RESIDUE RANGE : A 601 A 603 REMARK 3 ORIGIN FOR THE GROUP (A): 19.3878 26.4031 13.7016 REMARK 3 T TENSOR REMARK 3 T11: 0.1860 T22: 0.2631 REMARK 3 T33: 0.1730 T12: 0.0349 REMARK 3 T13: 0.0389 T23: 0.0313 REMARK 3 L TENSOR REMARK 3 L11: 2.0463 L22: 5.5300 REMARK 3 L33: 2.3911 L12: 1.7943 REMARK 3 L13: -0.4160 L23: -1.2636 REMARK 3 S TENSOR REMARK 3 S11: -0.1688 S12: 0.0245 S13: -0.2290 REMARK 3 S21: -0.7128 S22: 0.0246 S23: -0.1215 REMARK 3 S31: 0.4696 S32: 0.1846 S33: 0.1442 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4K9U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079072. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : YALE MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11886 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 49.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.55100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3NXU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, SODIUM MALONATE, PH 5.5, REMARK 280 MICROBATCH UNDER OIL, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.76500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.94000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.08000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.76500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.94000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.08000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.76500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.94000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.08000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.76500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.94000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.08000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMERIC ASSEMBLY CONFIRMED BY GEL FILTRATION (REFERENCE: REMARK 300 SEVRIOUKOVA I.F. AND POULOS T.L., PNAS 2010, 107, 18422-18427) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 21 REMARK 465 ALA A 22 REMARK 465 TYR A 23 REMARK 465 LEU A 24 REMARK 465 TYR A 25 REMARK 465 GLY A 26 REMARK 465 LEU A 210 REMARK 465 LEU A 211 REMARK 465 ARG A 212 REMARK 465 PHE A 213 REMARK 465 ASP A 214 REMARK 465 PHE A 215 REMARK 465 THR A 264 REMARK 465 GLN A 265 REMARK 465 LYS A 266 REMARK 465 HIS A 267 REMARK 465 ARG A 268 REMARK 465 VAL A 269 REMARK 465 SER A 281 REMARK 465 LYS A 282 REMARK 465 GLU A 283 REMARK 465 THR A 284 REMARK 465 GLU A 285 REMARK 465 SER A 286 REMARK 465 HIS A 287 REMARK 465 LYS A 288 REMARK 465 ASP A 497 REMARK 465 GLY A 498 REMARK 465 THR A 499 REMARK 465 VAL A 500 REMARK 465 SER A 501 REMARK 465 GLY A 502 REMARK 465 ALA A 503 REMARK 465 HIS A 504 REMARK 465 HIS A 505 REMARK 465 HIS A 506 REMARK 465 HIS A 507 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 28 -14.87 -42.24 REMARK 500 PHE A 46 -59.82 66.46 REMARK 500 VAL A 95 -65.55 -104.43 REMARK 500 PHE A 102 67.88 -108.47 REMARK 500 ASP A 123 -116.61 60.19 REMARK 500 PRO A 135 2.42 -64.24 REMARK 500 PHE A 137 78.52 -102.95 REMARK 500 SER A 139 -65.49 -18.87 REMARK 500 PRO A 169 135.55 -18.33 REMARK 500 THR A 187 -69.73 -92.77 REMARK 500 SER A 195 -2.77 -50.53 REMARK 500 VAL A 225 -80.33 -69.77 REMARK 500 VAL A 240 1.95 -62.42 REMARK 500 ARG A 243 47.88 -72.89 REMARK 500 GLU A 244 -51.78 -133.32 REMARK 500 PHE A 248 -70.23 -53.73 REMARK 500 LEU A 261 45.99 -75.26 REMARK 500 GLU A 262 -53.41 -135.34 REMARK 500 PHE A 271 -71.13 -57.07 REMARK 500 GLN A 279 34.76 -90.92 REMARK 500 TYR A 307 -76.78 -78.87 REMARK 500 ASN A 341 34.07 86.69 REMARK 500 ILE A 369 -14.36 -40.90 REMARK 500 ASN A 384 47.37 38.96 REMARK 500 ASN A 441 -179.78 -62.42 REMARK 500 GLN A 461 25.06 -72.08 REMARK 500 ASN A 462 29.80 179.23 REMARK 500 CYS A 468 -156.74 -127.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 601 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 442 SG REMARK 620 2 HEM A 601 NA 108.7 REMARK 620 3 HEM A 601 NB 94.4 84.3 REMARK 620 4 HEM A 601 NC 104.5 146.7 90.5 REMARK 620 5 HEM A 601 ND 101.2 87.0 163.9 89.4 REMARK 620 6 5AW A 602 N30 171.8 69.6 77.5 77.1 86.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5AW A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5AW A 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NXU RELATED DB: PDB REMARK 900 RELATED ID: 4I4H RELATED DB: PDB REMARK 900 RELATED ID: 4I4G RELATED DB: PDB REMARK 900 RELATED ID: 4K9T RELATED DB: PDB REMARK 900 RELATED ID: 4K9V RELATED DB: PDB REMARK 900 RELATED ID: 4K9W RELATED DB: PDB REMARK 900 RELATED ID: 4K9X RELATED DB: PDB DBREF 4K9U A 21 503 UNP P08684 CP3A4_HUMAN 1 503 SEQADV 4K9U A UNP P08684 LEU 3 DELETION SEQADV 4K9U A UNP P08684 ILE 4 DELETION SEQADV 4K9U A UNP P08684 PRO 5 DELETION SEQADV 4K9U A UNP P08684 ASP 6 DELETION SEQADV 4K9U A UNP P08684 LEU 7 DELETION SEQADV 4K9U A UNP P08684 ALA 8 DELETION SEQADV 4K9U A UNP P08684 MET 9 DELETION SEQADV 4K9U A UNP P08684 GLU 10 DELETION SEQADV 4K9U A UNP P08684 THR 11 DELETION SEQADV 4K9U A UNP P08684 TRP 12 DELETION SEQADV 4K9U A UNP P08684 LEU 13 DELETION SEQADV 4K9U A UNP P08684 LEU 14 DELETION SEQADV 4K9U A UNP P08684 LEU 15 DELETION SEQADV 4K9U A UNP P08684 ALA 16 DELETION SEQADV 4K9U A UNP P08684 VAL 17 DELETION SEQADV 4K9U A UNP P08684 SER 18 DELETION SEQADV 4K9U A UNP P08684 LEU 19 DELETION SEQADV 4K9U A UNP P08684 VAL 20 DELETION SEQADV 4K9U A UNP P08684 LEU 21 DELETION SEQADV 4K9U A UNP P08684 LEU 22 DELETION SEQADV 4K9U HIS A 504 UNP P08684 EXPRESSION TAG SEQADV 4K9U HIS A 505 UNP P08684 EXPRESSION TAG SEQADV 4K9U HIS A 506 UNP P08684 EXPRESSION TAG SEQADV 4K9U HIS A 507 UNP P08684 EXPRESSION TAG SEQRES 1 A 487 MET ALA TYR LEU TYR GLY THR HIS SER HIS GLY LEU PHE SEQRES 2 A 487 LYS LYS LEU GLY ILE PRO GLY PRO THR PRO LEU PRO PHE SEQRES 3 A 487 LEU GLY ASN ILE LEU SER TYR HIS LYS GLY PHE CYS MET SEQRES 4 A 487 PHE ASP MET GLU CYS HIS LYS LYS TYR GLY LYS VAL TRP SEQRES 5 A 487 GLY PHE TYR ASP GLY GLN GLN PRO VAL LEU ALA ILE THR SEQRES 6 A 487 ASP PRO ASP MET ILE LYS THR VAL LEU VAL LYS GLU CYS SEQRES 7 A 487 TYR SER VAL PHE THR ASN ARG ARG PRO PHE GLY PRO VAL SEQRES 8 A 487 GLY PHE MET LYS SER ALA ILE SER ILE ALA GLU ASP GLU SEQRES 9 A 487 GLU TRP LYS ARG LEU ARG SER LEU LEU SER PRO THR PHE SEQRES 10 A 487 THR SER GLY LYS LEU LYS GLU MET VAL PRO ILE ILE ALA SEQRES 11 A 487 GLN TYR GLY ASP VAL LEU VAL ARG ASN LEU ARG ARG GLU SEQRES 12 A 487 ALA GLU THR GLY LYS PRO VAL THR LEU LYS ASP VAL PHE SEQRES 13 A 487 GLY ALA TYR SER MET ASP VAL ILE THR SER THR SER PHE SEQRES 14 A 487 GLY VAL ASN ILE ASP SER LEU ASN ASN PRO GLN ASP PRO SEQRES 15 A 487 PHE VAL GLU ASN THR LYS LYS LEU LEU ARG PHE ASP PHE SEQRES 16 A 487 LEU ASP PRO PHE PHE LEU SER ILE THR VAL PHE PRO PHE SEQRES 17 A 487 LEU ILE PRO ILE LEU GLU VAL LEU ASN ILE CYS VAL PHE SEQRES 18 A 487 PRO ARG GLU VAL THR ASN PHE LEU ARG LYS SER VAL LYS SEQRES 19 A 487 ARG MET LYS GLU SER ARG LEU GLU ASP THR GLN LYS HIS SEQRES 20 A 487 ARG VAL ASP PHE LEU GLN LEU MET ILE ASP SER GLN ASN SEQRES 21 A 487 SER LYS GLU THR GLU SER HIS LYS ALA LEU SER ASP LEU SEQRES 22 A 487 GLU LEU VAL ALA GLN SER ILE ILE PHE ILE PHE ALA GLY SEQRES 23 A 487 TYR GLU THR THR SER SER VAL LEU SER PHE ILE MET TYR SEQRES 24 A 487 GLU LEU ALA THR HIS PRO ASP VAL GLN GLN LYS LEU GLN SEQRES 25 A 487 GLU GLU ILE ASP ALA VAL LEU PRO ASN LYS ALA PRO PRO SEQRES 26 A 487 THR TYR ASP THR VAL LEU GLN MET GLU TYR LEU ASP MET SEQRES 27 A 487 VAL VAL ASN GLU THR LEU ARG LEU PHE PRO ILE ALA MET SEQRES 28 A 487 ARG LEU GLU ARG VAL CYS LYS LYS ASP VAL GLU ILE ASN SEQRES 29 A 487 GLY MET PHE ILE PRO LYS GLY VAL VAL VAL MET ILE PRO SEQRES 30 A 487 SER TYR ALA LEU HIS ARG ASP PRO LYS TYR TRP THR GLU SEQRES 31 A 487 PRO GLU LYS PHE LEU PRO GLU ARG PHE SER LYS LYS ASN SEQRES 32 A 487 LYS ASP ASN ILE ASP PRO TYR ILE TYR THR PRO PHE GLY SEQRES 33 A 487 SER GLY PRO ARG ASN CYS ILE GLY MET ARG PHE ALA LEU SEQRES 34 A 487 MET ASN MET LYS LEU ALA LEU ILE ARG VAL LEU GLN ASN SEQRES 35 A 487 PHE SER PHE LYS PRO CYS LYS GLU THR GLN ILE PRO LEU SEQRES 36 A 487 LYS LEU SER LEU GLY GLY LEU LEU GLN PRO GLU LYS PRO SEQRES 37 A 487 VAL VAL LEU LYS VAL GLU SER ARG ASP GLY THR VAL SER SEQRES 38 A 487 GLY ALA HIS HIS HIS HIS HET HEM A 601 43 HET 5AW A 602 37 HET 5AW A 603 37 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM 5AW N~2~-(METHYL{[2-(PROPAN-2-YL)-1,3-THIAZOL-4- HETNAM 2 5AW YL]METHYL}CARBAMOYL)-N-[(2S,5S)-5-{[(1,3-THIAZOL-5- HETNAM 3 5AW YLMETHOXY)CARBONYL]AMINO}HEXAN-2-YL]-D-VALINAMIDE HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 5AW 2(C25 H40 N6 O4 S2) HELIX 1 1 GLY A 31 LEU A 36 1 6 HELIX 2 2 ASN A 49 LYS A 55 5 7 HELIX 3 3 GLY A 56 GLY A 69 1 14 HELIX 4 4 ASP A 86 VAL A 95 1 10 HELIX 5 5 VAL A 111 ALA A 121 5 11 HELIX 6 6 ASP A 123 SER A 134 1 12 HELIX 7 7 PRO A 135 PHE A 137 5 3 HELIX 8 8 THR A 138 GLU A 163 1 26 HELIX 9 9 LEU A 172 PHE A 189 1 18 HELIX 10 10 PHE A 203 LYS A 209 1 7 HELIX 11 11 ASP A 217 PHE A 226 1 10 HELIX 12 12 LEU A 229 ASN A 237 1 9 HELIX 13 13 GLU A 244 SER A 259 1 16 HELIX 14 14 PHE A 271 SER A 278 1 8 HELIX 15 15 SER A 291 HIS A 324 1 34 HELIX 16 16 HIS A 324 LEU A 339 1 16 HELIX 17 17 THR A 346 MET A 353 1 8 HELIX 18 18 MET A 353 PHE A 367 1 15 HELIX 19 19 PRO A 397 HIS A 402 1 6 HELIX 20 20 ARG A 403 TRP A 408 5 6 HELIX 21 21 LEU A 415 PHE A 419 5 5 HELIX 22 22 SER A 420 ASP A 425 1 6 HELIX 23 23 SER A 437 ASN A 441 5 5 HELIX 24 24 GLY A 444 GLN A 461 1 18 SHEET 1 A 4 VAL A 71 ASP A 76 0 SHEET 2 A 4 GLN A 79 ILE A 84 -1 O GLN A 79 N ASP A 76 SHEET 3 A 4 VAL A 393 ILE A 396 1 O MET A 395 N LEU A 82 SHEET 4 A 4 LEU A 373 VAL A 376 -1 N LEU A 373 O ILE A 396 SHEET 1 B 3 VAL A 170 THR A 171 0 SHEET 2 B 3 VAL A 490 GLU A 494 -1 O LEU A 491 N VAL A 170 SHEET 3 B 3 SER A 464 LYS A 466 -1 N LYS A 466 O LYS A 492 SHEET 1 C 2 VAL A 381 ILE A 383 0 SHEET 2 C 2 MET A 386 ILE A 388 -1 O ILE A 388 N VAL A 381 LINK SG CYS A 442 FE HEM A 601 1555 1555 2.18 LINK FE HEM A 601 N30 5AW A 602 1555 1555 2.36 CISPEP 1 ILE A 473 PRO A 474 0 -3.75 SITE 1 AC1 18 ARG A 105 ILE A 118 SER A 119 TRP A 126 SITE 2 AC1 18 ARG A 130 ALA A 305 THR A 309 LEU A 373 SITE 3 AC1 18 ARG A 375 PRO A 434 PHE A 435 GLY A 436 SITE 4 AC1 18 SER A 437 ARG A 440 ASN A 441 CYS A 442 SITE 5 AC1 18 GLY A 444 5AW A 602 SITE 1 AC2 11 LYS A 208 LYS A 209 PHE A 220 VAL A 240 SITE 2 AC2 11 ARG A 243 GLU A 244 PHE A 304 ALA A 305 SITE 3 AC2 11 THR A 309 HEM A 601 5AW A 603 SITE 1 AC3 10 PHE A 108 SER A 119 LEU A 216 ASP A 217 SITE 2 AC3 10 PHE A 304 GLU A 308 GLY A 481 LEU A 482 SITE 3 AC3 10 GLN A 484 5AW A 602 CRYST1 77.530 99.880 130.160 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012898 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010012 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007683 0.00000