HEADER OXIDOREDUCTASE 21-APR-13 4KA0 TITLE CRYSTAL STRUCTURE OF A PUTATIVE THIOL-DISULFIDE OXIDOREDUCTASE FROM TITLE 2 BACTEROIDES VULGATUS (TARGET NYSGRC-011676), SPACE GROUP P21221 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE THIOL-DISULFIDE OXIDOREDUCTASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 299-455; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES VULGATUS; SOURCE 3 ORGANISM_TAXID: 435590; SOURCE 4 STRAIN: ATCC 8482; SOURCE 5 GENE: BVU_2222; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS PUTATIVE DISULFIDE OXIDOREDUCTASE, NYSGRC, STRUCTURAL GENOMICS, NEW KEYWDS 2 YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM, PSI-BIOLOGY, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,Y.PATSKOVSKY,R.TORO,R.BHOSLE,B.HILLERICH,A.GIZZI, AUTHOR 2 S.GARFORTH,A.KAR,M.K.CHAN,J.LAFLUER,H.PATEL,B.MATIKAINEN,S.CHAMALA, AUTHOR 3 S.LIM,A.CELIKGIL,G.VILLEGAS,B.EVANS,J.LOVE,A.FISER,K.KHAFIZOV, AUTHOR 4 R.D.SEIDEL,J.B.BONANNO,R.N.ARMSTRONG,S.C.ALMO,NEW YORK STRUCTURAL AUTHOR 5 GENOMICS RESEARCH CONSORTIUM (NYSGRC) REVDAT 3 20-SEP-23 4KA0 1 REMARK SEQADV REVDAT 2 29-MAY-13 4KA0 1 REMARK REVDAT 1 22-MAY-13 4KA0 0 JRNL AUTH M.W.VETTING,Y.PATSKOVSKY,R.TORO,R.BHOSLE,B.HILLERICH, JRNL AUTH 2 A.GIZZI,S.GARFORTH,A.KAR,M.K.CHAN,J.LAFLUER,H.PATEL, JRNL AUTH 3 B.MATIKAINEN,S.CHAMALA,S.LIM,A.CELIKGIL,G.VILLEGAS,B.EVANS, JRNL AUTH 4 J.LOVE,A.FISER,K.KHAFIZOV,R.D.SEIDEL,J.B.BONANNO, JRNL AUTH 5 R.N.ARMSTRONG,S.C.ALMO, JRNL AUTH 6 NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE THIOL-DISULFIDE JRNL TITL 2 OXIDOREDUCTASE FROM BACTEROIDES VULGATUS (TARGET JRNL TITL 3 NYSGRC-011676), SPACE GROUP P21221 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 37016 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1848 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2561 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 128 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4512 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 185 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.32000 REMARK 3 B22 (A**2) : -2.41000 REMARK 3 B33 (A**2) : 0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.235 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.211 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.161 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.091 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4640 ; 0.016 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4450 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6315 ; 1.714 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10297 ; 0.839 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 561 ; 6.389 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 193 ;33.444 ;24.819 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 793 ;16.107 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;13.729 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 701 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5093 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 991 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2256 ; 3.225 ; 3.714 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2255 ; 3.224 ; 3.714 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2813 ; 4.452 ; 5.554 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KA0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000079078. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37055 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 90.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : 0.08400 REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.56500 REMARK 200 R SYM FOR SHELL (I) : 0.56500 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 2LJA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (10 MM HEPES, PH 7.8, 150 MM REMARK 280 NACL, 10% GLYCEROL); RESERVOIR (2000 MM AMMONIUM SULFATE, 100 MM REMARK 280 SODIUM CITRATE/ CITRIC ACID PH 5.5; CRYOPROTECTION (20% GLYCEROL) REMARK 280 , VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 35.52000 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.31500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 35.52000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.31500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 ASN A 4 REMARK 465 ALA A 5 REMARK 465 ASP A 6 REMARK 465 PHE A 7 REMARK 465 ALA A 8 REMARK 465 THR A 9 REMARK 465 GLU A 10 REMARK 465 ILE A 11 REMARK 465 GLU A 12 REMARK 465 GLY A 13 REMARK 465 LYS A 14 REMARK 465 ILE A 15 REMARK 465 VAL A 16 REMARK 465 GLN A 17 REMARK 465 GLU A 161 REMARK 465 GLY A 162 REMARK 465 HIS A 163 REMARK 465 HIS A 164 REMARK 465 HIS A 165 REMARK 465 HIS A 166 REMARK 465 HIS A 167 REMARK 465 HIS A 168 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LEU B 3 REMARK 465 ASN B 4 REMARK 465 ALA B 5 REMARK 465 ASP B 6 REMARK 465 PHE B 7 REMARK 465 ALA B 8 REMARK 465 THR B 9 REMARK 465 GLU B 10 REMARK 465 ILE B 11 REMARK 465 GLU B 12 REMARK 465 GLY B 13 REMARK 465 LYS B 14 REMARK 465 ILE B 15 REMARK 465 VAL B 16 REMARK 465 GLN B 17 REMARK 465 ALA B 18 REMARK 465 ASN B 159 REMARK 465 LYS B 160 REMARK 465 GLU B 161 REMARK 465 GLY B 162 REMARK 465 HIS B 163 REMARK 465 HIS B 164 REMARK 465 HIS B 165 REMARK 465 HIS B 166 REMARK 465 HIS B 167 REMARK 465 HIS B 168 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 LEU C 3 REMARK 465 ASN C 4 REMARK 465 ALA C 5 REMARK 465 ASP C 6 REMARK 465 PHE C 7 REMARK 465 ALA C 8 REMARK 465 THR C 9 REMARK 465 GLU C 10 REMARK 465 ILE C 11 REMARK 465 GLU C 12 REMARK 465 GLY C 13 REMARK 465 LYS C 14 REMARK 465 ILE C 15 REMARK 465 VAL C 16 REMARK 465 GLN C 17 REMARK 465 ASN C 159 REMARK 465 LYS C 160 REMARK 465 GLU C 161 REMARK 465 GLY C 162 REMARK 465 HIS C 163 REMARK 465 HIS C 164 REMARK 465 HIS C 165 REMARK 465 HIS C 166 REMARK 465 HIS C 167 REMARK 465 HIS C 168 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 LEU D 3 REMARK 465 ASN D 4 REMARK 465 ALA D 5 REMARK 465 ASP D 6 REMARK 465 PHE D 7 REMARK 465 ALA D 8 REMARK 465 THR D 9 REMARK 465 GLU D 10 REMARK 465 ILE D 11 REMARK 465 GLU D 12 REMARK 465 GLY D 13 REMARK 465 LYS D 14 REMARK 465 ILE D 15 REMARK 465 VAL D 16 REMARK 465 GLN D 17 REMARK 465 ASN D 159 REMARK 465 LYS D 160 REMARK 465 GLU D 161 REMARK 465 GLY D 162 REMARK 465 HIS D 163 REMARK 465 HIS D 164 REMARK 465 HIS D 165 REMARK 465 HIS D 166 REMARK 465 HIS D 167 REMARK 465 HIS D 168 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 31 NE2 HIS B 41 1.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 59 CA - CB - SG ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP B 132 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 138 -61.09 -101.86 REMARK 500 LYS B 46 125.04 -38.21 REMARK 500 VAL D 114 -31.31 -34.12 REMARK 500 PHE D 135 35.53 70.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-011676 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 4K9Z RELATED DB: PDB DBREF 4KA0 A 4 160 UNP A6L2G8 A6L2G8_BACV8 299 455 DBREF 4KA0 B 4 160 UNP A6L2G8 A6L2G8_BACV8 299 455 DBREF 4KA0 C 4 160 UNP A6L2G8 A6L2G8_BACV8 299 455 DBREF 4KA0 D 4 160 UNP A6L2G8 A6L2G8_BACV8 299 455 SEQADV 4KA0 MET A 1 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 SER A 2 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 LEU A 3 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 GLU A 161 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 GLY A 162 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 HIS A 163 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 HIS A 164 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 HIS A 165 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 HIS A 166 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 HIS A 167 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 HIS A 168 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 MET B 1 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 SER B 2 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 LEU B 3 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 GLU B 161 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 GLY B 162 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 HIS B 163 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 HIS B 164 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 HIS B 165 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 HIS B 166 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 HIS B 167 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 HIS B 168 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 MET C 1 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 SER C 2 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 LEU C 3 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 GLU C 161 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 GLY C 162 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 HIS C 163 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 HIS C 164 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 HIS C 165 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 HIS C 166 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 HIS C 167 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 HIS C 168 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 MET D 1 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 SER D 2 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 LEU D 3 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 GLU D 161 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 GLY D 162 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 HIS D 163 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 HIS D 164 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 HIS D 165 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 HIS D 166 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 HIS D 167 UNP A6L2G8 EXPRESSION TAG SEQADV 4KA0 HIS D 168 UNP A6L2G8 EXPRESSION TAG SEQRES 1 A 168 MET SER LEU ASN ALA ASP PHE ALA THR GLU ILE GLU GLY SEQRES 2 A 168 LYS ILE VAL GLN ALA SER LYS LEU LEU PRO GLY GLN PRO SEQRES 3 A 168 ALA ILE ASP PHE GLU MET LEU ASP VAL GLU GLY ASN VAL SEQRES 4 A 168 LYS HIS LEU ALA ASP PHE LYS GLY LYS VAL ILE TYR ILE SEQRES 5 A 168 ASP LEU TRP ALA THR TRP CYS GLY PRO CYS ILE GLN GLU SEQRES 6 A 168 SER PRO ALA PHE GLU ALA LEU GLY LYS LYS TYR VAL GLY SEQRES 7 A 168 LYS ASP ILE VAL PHE LEU PRO VAL SER THR ASP THR THR SEQRES 8 A 168 THR LYS PRO TRP LEU ARG TYR LEU ASP GLY HIS LYS LYS SEQRES 9 A 168 GLU LEU THR GLN TYR HIS SER ASN ASP VAL ALA LEU LYS SEQRES 10 A 168 GLU SER TRP ALA ILE MET TYR ILE PRO ARG PHE ILE LEU SEQRES 11 A 168 ILE ASP LYS ASP PHE ASN ILE VAL ASN ALA TYR ALA PRO SEQRES 12 A 168 ARG PRO SER SER GLU GLU ILE GLY THR LEU ILE ASP SER SEQRES 13 A 168 VAL LEU ASN LYS GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 168 MET SER LEU ASN ALA ASP PHE ALA THR GLU ILE GLU GLY SEQRES 2 B 168 LYS ILE VAL GLN ALA SER LYS LEU LEU PRO GLY GLN PRO SEQRES 3 B 168 ALA ILE ASP PHE GLU MET LEU ASP VAL GLU GLY ASN VAL SEQRES 4 B 168 LYS HIS LEU ALA ASP PHE LYS GLY LYS VAL ILE TYR ILE SEQRES 5 B 168 ASP LEU TRP ALA THR TRP CYS GLY PRO CYS ILE GLN GLU SEQRES 6 B 168 SER PRO ALA PHE GLU ALA LEU GLY LYS LYS TYR VAL GLY SEQRES 7 B 168 LYS ASP ILE VAL PHE LEU PRO VAL SER THR ASP THR THR SEQRES 8 B 168 THR LYS PRO TRP LEU ARG TYR LEU ASP GLY HIS LYS LYS SEQRES 9 B 168 GLU LEU THR GLN TYR HIS SER ASN ASP VAL ALA LEU LYS SEQRES 10 B 168 GLU SER TRP ALA ILE MET TYR ILE PRO ARG PHE ILE LEU SEQRES 11 B 168 ILE ASP LYS ASP PHE ASN ILE VAL ASN ALA TYR ALA PRO SEQRES 12 B 168 ARG PRO SER SER GLU GLU ILE GLY THR LEU ILE ASP SER SEQRES 13 B 168 VAL LEU ASN LYS GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 C 168 MET SER LEU ASN ALA ASP PHE ALA THR GLU ILE GLU GLY SEQRES 2 C 168 LYS ILE VAL GLN ALA SER LYS LEU LEU PRO GLY GLN PRO SEQRES 3 C 168 ALA ILE ASP PHE GLU MET LEU ASP VAL GLU GLY ASN VAL SEQRES 4 C 168 LYS HIS LEU ALA ASP PHE LYS GLY LYS VAL ILE TYR ILE SEQRES 5 C 168 ASP LEU TRP ALA THR TRP CYS GLY PRO CYS ILE GLN GLU SEQRES 6 C 168 SER PRO ALA PHE GLU ALA LEU GLY LYS LYS TYR VAL GLY SEQRES 7 C 168 LYS ASP ILE VAL PHE LEU PRO VAL SER THR ASP THR THR SEQRES 8 C 168 THR LYS PRO TRP LEU ARG TYR LEU ASP GLY HIS LYS LYS SEQRES 9 C 168 GLU LEU THR GLN TYR HIS SER ASN ASP VAL ALA LEU LYS SEQRES 10 C 168 GLU SER TRP ALA ILE MET TYR ILE PRO ARG PHE ILE LEU SEQRES 11 C 168 ILE ASP LYS ASP PHE ASN ILE VAL ASN ALA TYR ALA PRO SEQRES 12 C 168 ARG PRO SER SER GLU GLU ILE GLY THR LEU ILE ASP SER SEQRES 13 C 168 VAL LEU ASN LYS GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 D 168 MET SER LEU ASN ALA ASP PHE ALA THR GLU ILE GLU GLY SEQRES 2 D 168 LYS ILE VAL GLN ALA SER LYS LEU LEU PRO GLY GLN PRO SEQRES 3 D 168 ALA ILE ASP PHE GLU MET LEU ASP VAL GLU GLY ASN VAL SEQRES 4 D 168 LYS HIS LEU ALA ASP PHE LYS GLY LYS VAL ILE TYR ILE SEQRES 5 D 168 ASP LEU TRP ALA THR TRP CYS GLY PRO CYS ILE GLN GLU SEQRES 6 D 168 SER PRO ALA PHE GLU ALA LEU GLY LYS LYS TYR VAL GLY SEQRES 7 D 168 LYS ASP ILE VAL PHE LEU PRO VAL SER THR ASP THR THR SEQRES 8 D 168 THR LYS PRO TRP LEU ARG TYR LEU ASP GLY HIS LYS LYS SEQRES 9 D 168 GLU LEU THR GLN TYR HIS SER ASN ASP VAL ALA LEU LYS SEQRES 10 D 168 GLU SER TRP ALA ILE MET TYR ILE PRO ARG PHE ILE LEU SEQRES 11 D 168 ILE ASP LYS ASP PHE ASN ILE VAL ASN ALA TYR ALA PRO SEQRES 12 D 168 ARG PRO SER SER GLU GLU ILE GLY THR LEU ILE ASP SER SEQRES 13 D 168 VAL LEU ASN LYS GLU GLY HIS HIS HIS HIS HIS HIS HET CL B 201 1 HETNAM CL CHLORIDE ION FORMUL 5 CL CL 1- FORMUL 6 HOH *185(H2 O) HELIX 1 1 ALA A 18 LEU A 22 5 5 HELIX 2 2 ALA A 43 LYS A 46 5 4 HELIX 3 3 CYS A 59 GLU A 65 1 7 HELIX 4 4 GLU A 65 TYR A 76 1 12 HELIX 5 5 THR A 91 HIS A 102 1 12 HELIX 6 6 ASP A 113 GLU A 118 1 6 HELIX 7 7 SER A 147 LYS A 160 1 14 HELIX 8 8 ALA B 43 LYS B 46 5 4 HELIX 9 9 CYS B 59 GLN B 64 1 6 HELIX 10 10 GLU B 65 TYR B 76 1 12 HELIX 11 11 THR B 91 HIS B 102 1 12 HELIX 12 12 ASP B 113 SER B 119 1 7 HELIX 13 13 GLU B 149 LEU B 158 1 10 HELIX 14 14 ALA C 18 LEU C 22 5 5 HELIX 15 15 ALA C 43 LYS C 46 5 4 HELIX 16 16 CYS C 59 TYR C 76 1 18 HELIX 17 17 THR C 91 HIS C 102 1 12 HELIX 18 18 ASP C 113 SER C 119 1 7 HELIX 19 19 SER C 147 LEU C 158 1 12 HELIX 20 20 ALA D 18 LEU D 22 5 5 HELIX 21 21 ALA D 43 LYS D 46 5 4 HELIX 22 22 CYS D 59 GLU D 65 1 7 HELIX 23 23 GLU D 65 TYR D 76 1 12 HELIX 24 24 THR D 91 HIS D 102 1 12 HELIX 25 25 VAL D 114 SER D 119 1 6 HELIX 26 26 SER D 147 LEU D 158 1 12 SHEET 1 A 7 VAL A 39 HIS A 41 0 SHEET 2 A 7 GLU A 31 ASP A 34 -1 N MET A 32 O LYS A 40 SHEET 3 A 7 TYR A 109 HIS A 110 -1 O HIS A 110 N LEU A 33 SHEET 4 A 7 ILE A 81 SER A 87 1 N PRO A 85 O TYR A 109 SHEET 5 A 7 VAL A 49 TRP A 55 1 N ASP A 53 O VAL A 86 SHEET 6 A 7 ARG A 127 ILE A 131 -1 O ARG A 127 N LEU A 54 SHEET 7 A 7 ILE A 137 ASN A 139 -1 O ASN A 139 N LEU A 130 SHEET 1 B 7 VAL B 39 HIS B 41 0 SHEET 2 B 7 GLU B 31 ASP B 34 -1 N MET B 32 O LYS B 40 SHEET 3 B 7 TYR B 109 HIS B 110 -1 O HIS B 110 N LEU B 33 SHEET 4 B 7 ILE B 81 SER B 87 1 N SER B 87 O TYR B 109 SHEET 5 B 7 VAL B 49 TRP B 55 1 N ASP B 53 O VAL B 86 SHEET 6 B 7 ARG B 127 ILE B 131 -1 O ARG B 127 N LEU B 54 SHEET 7 B 7 ILE B 137 ASN B 139 -1 O VAL B 138 N LEU B 130 SHEET 1 C 7 VAL C 39 HIS C 41 0 SHEET 2 C 7 GLU C 31 ASP C 34 -1 N MET C 32 O LYS C 40 SHEET 3 C 7 TYR C 109 HIS C 110 -1 O HIS C 110 N LEU C 33 SHEET 4 C 7 ILE C 81 SER C 87 1 N PRO C 85 O TYR C 109 SHEET 5 C 7 VAL C 49 TRP C 55 1 N VAL C 49 O VAL C 82 SHEET 6 C 7 ARG C 127 ILE C 131 -1 O ILE C 131 N ILE C 50 SHEET 7 C 7 ILE C 137 ASN C 139 -1 O VAL C 138 N LEU C 130 SHEET 1 D 7 VAL D 39 HIS D 41 0 SHEET 2 D 7 GLU D 31 ASP D 34 -1 N MET D 32 O LYS D 40 SHEET 3 D 7 TYR D 109 HIS D 110 -1 O HIS D 110 N LEU D 33 SHEET 4 D 7 ILE D 81 SER D 87 1 N SER D 87 O TYR D 109 SHEET 5 D 7 VAL D 49 TRP D 55 1 N ASP D 53 O VAL D 86 SHEET 6 D 7 ARG D 127 ILE D 131 -1 O ILE D 129 N ILE D 52 SHEET 7 D 7 ILE D 137 ASN D 139 -1 O VAL D 138 N LEU D 130 SSBOND 1 CYS A 59 CYS A 62 1555 1555 2.15 SSBOND 2 CYS B 59 CYS B 62 1555 1555 2.19 SSBOND 3 CYS C 59 CYS C 62 1555 1555 2.15 SSBOND 4 CYS D 59 CYS D 62 1555 1555 2.16 CISPEP 1 ILE A 125 PRO A 126 0 -1.97 CISPEP 2 ILE B 125 PRO B 126 0 10.02 CISPEP 3 ILE C 125 PRO C 126 0 8.90 CISPEP 4 ILE D 125 PRO D 126 0 -3.52 SITE 1 AC1 5 ASN B 139 ALA B 140 TYR B 141 HOH B 344 SITE 2 AC1 5 ASN D 139 CRYST1 71.040 90.510 96.630 90.00 90.00 90.00 P 21 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014077 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011048 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010349 0.00000