HEADER OXIDOREDUCTASE 22-APR-13 4KA5 OBSLTE 07-SEP-16 4KA5 5SYH TITLE STRUCTURE OF D141A VARIANT OF B. PSEUDOMALLEI KATG COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATALASE-PEROXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 15-728; COMPND 5 SYNONYM: CP, PEROXIDASE/CATALASE; COMPND 6 EC: 1.11.1.21; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI; SOURCE 3 ORGANISM_TAXID: 272560; SOURCE 4 STRAIN: K96243; SOURCE 5 GENE: BPSL2865, KATG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: UM262; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PKS KEYWDS CATALASE-PEROXIDASE, KATG, D141A VARIANT, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.C.LOEWEN REVDAT 3 07-SEP-16 4KA5 1 OBSLTE REVDAT 2 09-APR-14 4KA5 1 JRNL REVDAT 1 19-MAR-14 4KA5 0 JRNL AUTH P.VIDOSSICH,P.C.LOEWEN,X.CARPENA,G.FIORIN,I.FITA,C.ROVIRA JRNL TITL STRUCTURE OF D141A VARIANT OF B. PSEUDOMALLEI KATG JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 228125 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 11385 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 15312 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 851 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 11016 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 123 REMARK 3 SOLVENT ATOMS : 1045 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.80000 REMARK 3 B22 (A**2) : 1.59000 REMARK 3 B33 (A**2) : -0.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.074 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.045 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.603 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 11471 ; 0.023 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 10671 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 15635 ; 2.091 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 24441 ; 1.495 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1436 ; 6.097 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 538 ;35.462 ;23.643 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1743 ;12.513 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 88 ;15.057 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1650 ; 0.160 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 13317 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 2795 ; 0.012 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 2 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 35 110 B 35 110 3420 0.100 0.050 REMARK 3 2 A 112 748 B 112 748 37859 0.070 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 748 REMARK 3 ORIGIN FOR THE GROUP (A): -24.3574 -61.3606 -21.4393 REMARK 3 T TENSOR REMARK 3 T11: 0.0370 T22: 0.0035 REMARK 3 T33: 0.0247 T12: -0.0015 REMARK 3 T13: 0.0047 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.0147 L22: 0.0644 REMARK 3 L33: 0.0924 L12: -0.0146 REMARK 3 L13: -0.0182 L23: 0.0437 REMARK 3 S TENSOR REMARK 3 S11: 0.0066 S12: 0.0046 S13: -0.0122 REMARK 3 S21: 0.0011 S22: -0.0078 S23: -0.0047 REMARK 3 S31: 0.0143 S32: -0.0006 S33: 0.0012 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 35 B 748 REMARK 3 ORIGIN FOR THE GROUP (A): -9.2749 -32.5876 5.1864 REMARK 3 T TENSOR REMARK 3 T11: 0.0419 T22: 0.0029 REMARK 3 T33: 0.0238 T12: -0.0041 REMARK 3 T13: -0.0039 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.0737 L22: 0.0212 REMARK 3 L33: 0.0467 L12: -0.0103 REMARK 3 L13: 0.0133 L23: -0.0152 REMARK 3 S TENSOR REMARK 3 S11: -0.0102 S12: -0.0090 S13: 0.0037 REMARK 3 S21: -0.0001 S22: 0.0040 S23: -0.0157 REMARK 3 S31: -0.0057 S32: 0.0025 S33: 0.0061 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4KA5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-13. REMARK 100 THE RCSB ID CODE IS RCSB079083. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 228217 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 95.139 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.40300 REMARK 200 R SYM FOR SHELL (I) : 0.40300 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC 5.7.0029 REMARK 200 STARTING MODEL: PDB ENTRY 1MWV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 4000, 20% MPD, 0.1 M SODIUM REMARK 280 CITRATE, PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 50.38500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.32500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.72500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 87.32500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 50.38500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.72500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -178.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 35 CG OD1 ND2 REMARK 470 ASN B 35 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2192 O HOH B 2456 1.51 REMARK 500 CH2 TOX B 111 CE1 TYR B 238 1.68 REMARK 500 CH2 TOX A 111 CE1 TYR A 238 1.77 REMARK 500 CE2 TYR B 238 SD MET B 264 1.83 REMARK 500 CE2 TYR A 238 SD MET A 264 1.87 REMARK 500 O HOH B 2323 O HOH B 2460 1.93 REMARK 500 OD1 ASP B 512 O HOH B 2355 1.95 REMARK 500 O HOH A 1336 O HOH A 1390 2.00 REMARK 500 O HOH A 1211 O HOH A 1327 2.01 REMARK 500 O HOH A 1067 O HOH A 1240 2.05 REMARK 500 OE1 GLU B 410 O HOH B 2267 2.16 REMARK 500 O HOH A 1145 O HOH A 1148 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 512 CG ASP A 512 OD2 0.155 REMARK 500 ARG A 532 NE ARG A 532 CZ -0.079 REMARK 500 GLU A 595 CD GLU A 595 OE2 0.079 REMARK 500 GLN A 725 CG GLN A 725 CD 0.145 REMARK 500 ASP B 512 CB ASP B 512 CG 0.166 REMARK 500 ASP B 512 CG ASP B 512 OD2 0.149 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 161 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASP A 268 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 393 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 393 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 TYR A 434 CB - CG - CD1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 504 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP A 512 CB - CG - OD1 ANGL. DEV. = -9.8 DEGREES REMARK 500 ASP A 512 CB - CG - OD2 ANGL. DEV. = 9.2 DEGREES REMARK 500 ASP A 587 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG A 730 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 149 NE - CZ - NH1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG B 149 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP B 268 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 TYR B 434 CB - CG - CD1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ASP B 512 CB - CG - OD1 ANGL. DEV. = -9.1 DEGREES REMARK 500 ASP B 512 CB - CG - OD2 ANGL. DEV. = 9.3 DEGREES REMARK 500 VAL B 633 CG1 - CB - CG2 ANGL. DEV. = -11.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 95 76.05 -157.96 REMARK 500 PHE A 99 13.38 55.78 REMARK 500 ARG A 314 -128.87 52.04 REMARK 500 THR A 323 -70.37 -126.58 REMARK 500 LYS A 365 91.66 7.94 REMARK 500 GLN A 517 72.64 55.84 REMARK 500 TRP B 95 77.99 -161.90 REMARK 500 PHE B 99 14.49 59.53 REMARK 500 TYR B 238 -68.92 -123.82 REMARK 500 ARG B 314 -125.72 50.85 REMARK 500 THR B 323 -72.07 -120.68 REMARK 500 GLN B 517 64.46 60.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 364 LYS A 365 134.42 REMARK 500 GLY A 366 ALA A 367 137.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 801 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B2222 O REMARK 620 2 GLY B 124 O 108.9 REMARK 620 3 HOH B2240 O 92.5 79.5 REMARK 620 4 GLY B 122 O 106.7 102.2 158.7 REMARK 620 5 SER B 494 O 85.6 159.8 86.0 86.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 801 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 124 O REMARK 620 2 HOH A1043 O 111.2 REMARK 620 3 GLY A 122 O 101.0 107.8 REMARK 620 4 SER A 494 O 157.6 84.7 88.3 REMARK 620 5 HOH A1110 O 80.3 91.2 158.6 83.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 803 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 279 NE2 REMARK 620 2 HEM B 803 NA 91.9 REMARK 620 3 HEM B 803 NB 89.9 90.1 REMARK 620 4 HEM B 803 NC 92.9 175.2 89.4 REMARK 620 5 HEM B 803 ND 94.1 90.3 175.9 89.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 804 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 279 NE2 REMARK 620 2 HEM A 804 NA 92.2 REMARK 620 3 HEM A 804 NB 87.9 89.8 REMARK 620 4 HEM A 804 NC 92.3 175.4 89.7 REMARK 620 5 HEM A 804 ND 96.1 90.5 175.9 89.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 805 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KA6 RELATED DB: PDB DBREF 4KA5 A 35 748 UNP Q939D2 KATG_BURPS 15 728 DBREF 4KA5 B 35 748 UNP Q939D2 KATG_BURPS 15 728 SEQADV 4KA5 ALA A 141 UNP Q939D2 ASP 121 ENGINEERED MUTATION SEQADV 4KA5 ALA B 141 UNP Q939D2 ASP 121 ENGINEERED MUTATION SEQRES 1 A 714 ASN GLY THR SER ASN ARG ASP TRP TRP PRO ASN GLN LEU SEQRES 2 A 714 ASP LEU SER ILE LEU HIS ARG HIS SER SER LEU SER ASP SEQRES 3 A 714 PRO MET GLY LYS ASP PHE ASN TYR ALA GLN ALA PHE GLU SEQRES 4 A 714 LYS LEU ASP LEU ALA ALA VAL LYS ARG ASP LEU HIS ALA SEQRES 5 A 714 LEU MET THR THR SER GLN ASP TRP TRP PRO ALA ASP PHE SEQRES 6 A 714 GLY HIS TYR GLY GLY LEU PHE ILE ARG MET ALA TOX HIS SEQRES 7 A 714 SER ALA GLY THR TYR ARG THR ALA ASP GLY ARG GLY GLY SEQRES 8 A 714 ALA GLY GLU GLY GLN GLN ARG PHE ALA PRO LEU ASN SER SEQRES 9 A 714 TRP PRO ALA ASN ALA ASN LEU ASP LYS ALA ARG ARG LEU SEQRES 10 A 714 LEU TRP PRO ILE LYS GLN LYS TYR GLY ARG ALA ILE SER SEQRES 11 A 714 TRP ALA ASP LEU LEU ILE LEU THR GLY ASN VAL ALA LEU SEQRES 12 A 714 GLU SER MET GLY PHE LYS THR PHE GLY PHE ALA GLY GLY SEQRES 13 A 714 ARG ALA ASP THR TRP GLU PRO GLU ASP VAL TYR TRP GLY SEQRES 14 A 714 SER GLU LYS ILE TRP LEU GLU LEU SER GLY GLY PRO ASN SEQRES 15 A 714 SER ARG TYR SER GLY ASP ARG GLN LEU GLU ASN PRO LEU SEQRES 16 A 714 ALA ALA VAL GLN MET GLY LEU ILE TYR VAL ASN PRO GLU SEQRES 17 A 714 GLY PRO ASP GLY ASN PRO ASP PRO VAL ALA ALA ALA ARG SEQRES 18 A 714 ASP ILE ARG ASP THR PHE ALA ARG MET ALA MET ASN ASP SEQRES 19 A 714 GLU GLU THR VAL ALA LEU ILE ALA GLY GLY HIS THR PHE SEQRES 20 A 714 GLY LYS THR HIS GLY ALA GLY PRO ALA SER ASN VAL GLY SEQRES 21 A 714 ALA GLU PRO GLU ALA ALA GLY ILE GLU ALA GLN GLY LEU SEQRES 22 A 714 GLY TRP LYS SER ALA TYR ARG THR GLY LYS GLY ALA ASP SEQRES 23 A 714 ALA ILE THR SER GLY LEU GLU VAL THR TRP THR THR THR SEQRES 24 A 714 PRO THR GLN TRP SER HIS ASN PHE PHE GLU ASN LEU PHE SEQRES 25 A 714 GLY TYR GLU TRP GLU LEU THR LYS SER PRO ALA GLY ALA SEQRES 26 A 714 HIS GLN TRP VAL ALA LYS GLY ALA ASP ALA VAL ILE PRO SEQRES 27 A 714 ASP ALA PHE ASP PRO SER LYS LYS HIS ARG PRO THR MET SEQRES 28 A 714 LEU THR THR ASP LEU SER LEU ARG PHE ASP PRO ALA TYR SEQRES 29 A 714 GLU LYS ILE SER ARG ARG PHE HIS GLU ASN PRO GLU GLN SEQRES 30 A 714 PHE ALA ASP ALA PHE ALA ARG ALA TRP PHE LYS LEU THR SEQRES 31 A 714 HIS ARG ASP MET GLY PRO ARG ALA ARG TYR LEU GLY PRO SEQRES 32 A 714 GLU VAL PRO ALA GLU VAL LEU LEU TRP GLN ASP PRO ILE SEQRES 33 A 714 PRO ALA VAL ASP HIS PRO LEU ILE ASP ALA ALA ASP ALA SEQRES 34 A 714 ALA GLU LEU LYS ALA LYS VAL LEU ALA SER GLY LEU THR SEQRES 35 A 714 VAL SER GLN LEU VAL SER THR ALA TRP ALA ALA ALA SER SEQRES 36 A 714 THR PHE ARG GLY SER ASP LYS ARG GLY GLY ALA ASN GLY SEQRES 37 A 714 ALA ARG ILE ARG LEU ALA PRO GLN LYS ASP TRP GLU ALA SEQRES 38 A 714 ASN GLN PRO GLU GLN LEU ALA ALA VAL LEU GLU THR LEU SEQRES 39 A 714 GLU ALA ILE ARG THR ALA PHE ASN GLY ALA GLN ARG GLY SEQRES 40 A 714 GLY LYS GLN VAL SER LEU ALA ASP LEU ILE VAL LEU ALA SEQRES 41 A 714 GLY CYS ALA GLY VAL GLU GLN ALA ALA LYS ASN ALA GLY SEQRES 42 A 714 HIS ALA VAL THR VAL PRO PHE ALA PRO GLY ARG ALA ASP SEQRES 43 A 714 ALA SER GLN GLU GLN THR ASP VAL GLU SER MET ALA VAL SEQRES 44 A 714 LEU GLU PRO VAL ALA ASP GLY PHE ARG ASN TYR LEU LYS SEQRES 45 A 714 GLY LYS TYR ARG VAL PRO ALA GLU VAL LEU LEU VAL ASP SEQRES 46 A 714 LYS ALA GLN LEU LEU THR LEU SER ALA PRO GLU MET THR SEQRES 47 A 714 VAL LEU LEU GLY GLY LEU ARG VAL LEU GLY ALA ASN VAL SEQRES 48 A 714 GLY GLN SER ARG HIS GLY VAL PHE THR ALA ARG GLU GLN SEQRES 49 A 714 ALA LEU THR ASN ASP PHE PHE VAL ASN LEU LEU ASP MET SEQRES 50 A 714 GLY THR GLU TRP LYS PRO THR ALA ALA ASP ALA ASP VAL SEQRES 51 A 714 PHE GLU GLY ARG ASP ARG ALA THR GLY GLU LEU LYS TRP SEQRES 52 A 714 THR GLY THR ARG VAL ASP LEU VAL PHE GLY SER HIS SER SEQRES 53 A 714 GLN LEU ARG ALA LEU ALA GLU VAL TYR GLY SER ALA ASP SEQRES 54 A 714 ALA GLN GLU LYS PHE VAL ARG ASP PHE VAL ALA VAL TRP SEQRES 55 A 714 ASN LYS VAL MET ASN LEU ASP ARG PHE ASP LEU ALA SEQRES 1 B 714 ASN GLY THR SER ASN ARG ASP TRP TRP PRO ASN GLN LEU SEQRES 2 B 714 ASP LEU SER ILE LEU HIS ARG HIS SER SER LEU SER ASP SEQRES 3 B 714 PRO MET GLY LYS ASP PHE ASN TYR ALA GLN ALA PHE GLU SEQRES 4 B 714 LYS LEU ASP LEU ALA ALA VAL LYS ARG ASP LEU HIS ALA SEQRES 5 B 714 LEU MET THR THR SER GLN ASP TRP TRP PRO ALA ASP PHE SEQRES 6 B 714 GLY HIS TYR GLY GLY LEU PHE ILE ARG MET ALA TOX HIS SEQRES 7 B 714 SER ALA GLY THR TYR ARG THR ALA ASP GLY ARG GLY GLY SEQRES 8 B 714 ALA GLY GLU GLY GLN GLN ARG PHE ALA PRO LEU ASN SER SEQRES 9 B 714 TRP PRO ALA ASN ALA ASN LEU ASP LYS ALA ARG ARG LEU SEQRES 10 B 714 LEU TRP PRO ILE LYS GLN LYS TYR GLY ARG ALA ILE SER SEQRES 11 B 714 TRP ALA ASP LEU LEU ILE LEU THR GLY ASN VAL ALA LEU SEQRES 12 B 714 GLU SER MET GLY PHE LYS THR PHE GLY PHE ALA GLY GLY SEQRES 13 B 714 ARG ALA ASP THR TRP GLU PRO GLU ASP VAL TYR TRP GLY SEQRES 14 B 714 SER GLU LYS ILE TRP LEU GLU LEU SER GLY GLY PRO ASN SEQRES 15 B 714 SER ARG TYR SER GLY ASP ARG GLN LEU GLU ASN PRO LEU SEQRES 16 B 714 ALA ALA VAL GLN MET GLY LEU ILE TYR VAL ASN PRO GLU SEQRES 17 B 714 GLY PRO ASP GLY ASN PRO ASP PRO VAL ALA ALA ALA ARG SEQRES 18 B 714 ASP ILE ARG ASP THR PHE ALA ARG MET ALA MET ASN ASP SEQRES 19 B 714 GLU GLU THR VAL ALA LEU ILE ALA GLY GLY HIS THR PHE SEQRES 20 B 714 GLY LYS THR HIS GLY ALA GLY PRO ALA SER ASN VAL GLY SEQRES 21 B 714 ALA GLU PRO GLU ALA ALA GLY ILE GLU ALA GLN GLY LEU SEQRES 22 B 714 GLY TRP LYS SER ALA TYR ARG THR GLY LYS GLY ALA ASP SEQRES 23 B 714 ALA ILE THR SER GLY LEU GLU VAL THR TRP THR THR THR SEQRES 24 B 714 PRO THR GLN TRP SER HIS ASN PHE PHE GLU ASN LEU PHE SEQRES 25 B 714 GLY TYR GLU TRP GLU LEU THR LYS SER PRO ALA GLY ALA SEQRES 26 B 714 HIS GLN TRP VAL ALA LYS GLY ALA ASP ALA VAL ILE PRO SEQRES 27 B 714 ASP ALA PHE ASP PRO SER LYS LYS HIS ARG PRO THR MET SEQRES 28 B 714 LEU THR THR ASP LEU SER LEU ARG PHE ASP PRO ALA TYR SEQRES 29 B 714 GLU LYS ILE SER ARG ARG PHE HIS GLU ASN PRO GLU GLN SEQRES 30 B 714 PHE ALA ASP ALA PHE ALA ARG ALA TRP PHE LYS LEU THR SEQRES 31 B 714 HIS ARG ASP MET GLY PRO ARG ALA ARG TYR LEU GLY PRO SEQRES 32 B 714 GLU VAL PRO ALA GLU VAL LEU LEU TRP GLN ASP PRO ILE SEQRES 33 B 714 PRO ALA VAL ASP HIS PRO LEU ILE ASP ALA ALA ASP ALA SEQRES 34 B 714 ALA GLU LEU LYS ALA LYS VAL LEU ALA SER GLY LEU THR SEQRES 35 B 714 VAL SER GLN LEU VAL SER THR ALA TRP ALA ALA ALA SER SEQRES 36 B 714 THR PHE ARG GLY SER ASP LYS ARG GLY GLY ALA ASN GLY SEQRES 37 B 714 ALA ARG ILE ARG LEU ALA PRO GLN LYS ASP TRP GLU ALA SEQRES 38 B 714 ASN GLN PRO GLU GLN LEU ALA ALA VAL LEU GLU THR LEU SEQRES 39 B 714 GLU ALA ILE ARG THR ALA PHE ASN GLY ALA GLN ARG GLY SEQRES 40 B 714 GLY LYS GLN VAL SER LEU ALA ASP LEU ILE VAL LEU ALA SEQRES 41 B 714 GLY CYS ALA GLY VAL GLU GLN ALA ALA LYS ASN ALA GLY SEQRES 42 B 714 HIS ALA VAL THR VAL PRO PHE ALA PRO GLY ARG ALA ASP SEQRES 43 B 714 ALA SER GLN GLU GLN THR ASP VAL GLU SER MET ALA VAL SEQRES 44 B 714 LEU GLU PRO VAL ALA ASP GLY PHE ARG ASN TYR LEU LYS SEQRES 45 B 714 GLY LYS TYR ARG VAL PRO ALA GLU VAL LEU LEU VAL ASP SEQRES 46 B 714 LYS ALA GLN LEU LEU THR LEU SER ALA PRO GLU MET THR SEQRES 47 B 714 VAL LEU LEU GLY GLY LEU ARG VAL LEU GLY ALA ASN VAL SEQRES 48 B 714 GLY GLN SER ARG HIS GLY VAL PHE THR ALA ARG GLU GLN SEQRES 49 B 714 ALA LEU THR ASN ASP PHE PHE VAL ASN LEU LEU ASP MET SEQRES 50 B 714 GLY THR GLU TRP LYS PRO THR ALA ALA ASP ALA ASP VAL SEQRES 51 B 714 PHE GLU GLY ARG ASP ARG ALA THR GLY GLU LEU LYS TRP SEQRES 52 B 714 THR GLY THR ARG VAL ASP LEU VAL PHE GLY SER HIS SER SEQRES 53 B 714 GLN LEU ARG ALA LEU ALA GLU VAL TYR GLY SER ALA ASP SEQRES 54 B 714 ALA GLN GLU LYS PHE VAL ARG ASP PHE VAL ALA VAL TRP SEQRES 55 B 714 ASN LYS VAL MET ASN LEU ASP ARG PHE ASP LEU ALA MODRES 4KA5 TOX A 111 TRP 1-HYDROPEROXY-L-TRYPTOPHAN MODRES 4KA5 TOX B 111 TRP 1-HYDROPEROXY-L-TRYPTOPHAN HET TOX A 111 16 HET TOX B 111 16 HET NA A 801 1 HET CL A 802 1 HET CL A 803 1 HET HEM A 804 43 HET MPD A 805 8 HET MPD A 806 8 HET NA B 801 1 HET CL B 802 1 HET HEM B 803 43 HET MPD B 804 8 HET MPD B 805 8 HETNAM TOX 1-HYDROPEROXY-L-TRYPTOPHAN HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN HEM HEME FORMUL 1 TOX 2(C11 H12 N2 O4) FORMUL 3 NA 2(NA 1+) FORMUL 4 CL 3(CL 1-) FORMUL 6 HEM 2(C34 H32 FE N4 O4) FORMUL 7 MPD 4(C6 H14 O2) FORMUL 14 HOH *1045(H2 O) HELIX 1 1 SER A 38 TRP A 43 1 6 HELIX 2 2 ASP A 48 HIS A 53 5 6 HELIX 3 3 SER A 56 ASP A 60 5 5 HELIX 4 4 ASN A 67 LEU A 75 1 9 HELIX 5 5 ASP A 76 THR A 89 1 14 HELIX 6 6 ALA A 97 HIS A 101 5 5 HELIX 7 7 TYR A 102 GLY A 115 1 14 HELIX 8 8 GLY A 129 PHE A 133 5 5 HELIX 9 9 PRO A 135 ALA A 143 5 9 HELIX 10 10 ASN A 144 LEU A 152 1 9 HELIX 11 11 LEU A 152 GLY A 160 1 9 HELIX 12 12 ARG A 161 ILE A 163 5 3 HELIX 13 13 SER A 164 MET A 180 1 17 HELIX 14 14 GLY A 243 ASN A 247 5 5 HELIX 15 15 ASP A 249 ARG A 263 1 15 HELIX 16 16 ASN A 267 HIS A 279 1 13 HELIX 17 17 PRO A 289 VAL A 293 5 5 HELIX 18 18 GLU A 296 ALA A 300 5 5 HELIX 19 19 GLY A 301 GLN A 305 5 5 HELIX 20 20 LYS A 317 ALA A 321 5 5 HELIX 21 21 HIS A 339 TYR A 348 1 10 HELIX 22 22 LEU A 386 ASP A 395 1 10 HELIX 23 23 ASP A 395 ASN A 408 1 14 HELIX 24 24 ASN A 408 ARG A 426 1 19 HELIX 25 25 PRO A 430 TYR A 434 5 5 HELIX 26 26 LEU A 444 ASP A 448 5 5 HELIX 27 27 ASP A 459 SER A 473 1 15 HELIX 28 28 THR A 476 SER A 489 1 14 HELIX 29 29 ALA A 503 LEU A 507 5 5 HELIX 30 30 PRO A 509 ASN A 516 5 8 HELIX 31 31 GLN A 517 ALA A 538 1 22 HELIX 32 32 SER A 546 ALA A 566 1 21 HELIX 33 33 SER A 582 THR A 586 5 5 HELIX 34 34 ASP A 587 ALA A 592 1 6 HELIX 35 35 VAL A 593 GLU A 595 5 3 HELIX 36 36 GLY A 600 ASN A 603 5 4 HELIX 37 37 PRO A 612 LEU A 624 1 13 HELIX 38 38 SER A 627 GLY A 642 1 16 HELIX 39 39 ASN A 644 SER A 648 5 5 HELIX 40 40 ASN A 662 LEU A 669 1 8 HELIX 41 41 ARG A 701 VAL A 705 1 5 HELIX 42 42 PHE A 706 SER A 708 5 3 HELIX 43 43 HIS A 709 GLY A 720 1 12 HELIX 44 44 ALA A 724 ASN A 741 1 18 HELIX 45 45 ARG A 744 ALA A 748 5 5 HELIX 46 46 SER B 38 TRP B 43 1 6 HELIX 47 47 ASP B 48 HIS B 53 5 6 HELIX 48 48 ASN B 67 LYS B 74 1 8 HELIX 49 49 ASP B 76 MET B 88 1 13 HELIX 50 50 ALA B 97 HIS B 101 5 5 HELIX 51 51 TYR B 102 GLY B 115 1 14 HELIX 52 52 GLY B 129 PHE B 133 5 5 HELIX 53 53 PRO B 135 ALA B 143 5 9 HELIX 54 54 ASN B 144 LEU B 152 1 9 HELIX 55 55 LEU B 152 GLY B 160 1 9 HELIX 56 56 ARG B 161 ILE B 163 5 3 HELIX 57 57 SER B 164 MET B 180 1 17 HELIX 58 58 GLY B 243 ASN B 247 5 5 HELIX 59 59 ASP B 249 ARG B 263 1 15 HELIX 60 60 ASN B 267 HIS B 279 1 13 HELIX 61 61 PRO B 289 VAL B 293 5 5 HELIX 62 62 GLU B 296 ALA B 300 5 5 HELIX 63 63 GLY B 301 GLN B 305 5 5 HELIX 64 64 LYS B 317 ALA B 321 5 5 HELIX 65 65 HIS B 339 TYR B 348 1 10 HELIX 66 66 LEU B 386 ASP B 395 1 10 HELIX 67 67 ASP B 395 ASN B 408 1 14 HELIX 68 68 ASN B 408 ARG B 426 1 19 HELIX 69 69 PRO B 430 TYR B 434 5 5 HELIX 70 70 LEU B 444 ASP B 448 5 5 HELIX 71 71 ASP B 459 SER B 473 1 15 HELIX 72 72 THR B 476 SER B 489 1 14 HELIX 73 73 ALA B 503 LEU B 507 5 5 HELIX 74 74 PRO B 509 ASN B 516 5 8 HELIX 75 75 GLN B 517 ALA B 538 1 22 HELIX 76 76 SER B 546 ALA B 566 1 21 HELIX 77 77 SER B 582 THR B 586 5 5 HELIX 78 78 ASP B 587 ALA B 592 1 6 HELIX 79 79 VAL B 593 GLU B 595 5 3 HELIX 80 80 GLY B 600 ASN B 603 5 4 HELIX 81 81 PRO B 612 LEU B 624 1 13 HELIX 82 82 SER B 627 GLY B 642 1 16 HELIX 83 83 ASN B 644 SER B 648 5 5 HELIX 84 84 ASN B 662 LEU B 669 1 8 HELIX 85 85 ARG B 701 VAL B 705 1 5 HELIX 86 86 PHE B 706 SER B 708 5 3 HELIX 87 87 HIS B 709 GLY B 720 1 12 HELIX 88 88 ALA B 724 ASN B 741 1 18 HELIX 89 89 ARG B 744 ALA B 748 5 5 SHEET 1 A 2 TYR A 219 SER A 220 0 SHEET 2 A 2 GLN A 224 LEU A 225 -1 O GLN A 224 N SER A 220 SHEET 1 B 3 GLU A 351 LYS A 354 0 SHEET 2 B 3 HIS A 360 VAL A 363 -1 O GLN A 361 N THR A 353 SHEET 3 B 3 THR A 384 MET A 385 -1 O MET A 385 N TRP A 362 SHEET 1 C 2 ILE A 371 PRO A 372 0 SHEET 2 C 2 LYS A 380 HIS A 381 -1 O HIS A 381 N ILE A 371 SHEET 1 D 2 ALA A 598 ASP A 599 0 SHEET 2 D 2 TYR A 604 LEU A 605 -1 O TYR A 604 N ASP A 599 SHEET 1 E 3 THR A 673 PRO A 677 0 SHEET 2 E 3 VAL A 684 ASP A 689 -1 O ARG A 688 N GLU A 674 SHEET 3 E 3 LEU A 695 THR A 700 -1 O TRP A 697 N GLY A 687 SHEET 1 F 2 TYR B 219 SER B 220 0 SHEET 2 F 2 GLN B 224 LEU B 225 -1 O GLN B 224 N SER B 220 SHEET 1 G 3 TRP B 350 LYS B 354 0 SHEET 2 G 3 HIS B 360 ALA B 364 -1 O GLN B 361 N THR B 353 SHEET 3 G 3 THR B 384 MET B 385 -1 O MET B 385 N TRP B 362 SHEET 1 H 2 ILE B 371 PRO B 372 0 SHEET 2 H 2 LYS B 380 HIS B 381 -1 O HIS B 381 N ILE B 371 SHEET 1 I 2 ALA B 598 ASP B 599 0 SHEET 2 I 2 TYR B 604 LEU B 605 -1 O TYR B 604 N ASP B 599 SHEET 1 J 3 THR B 673 PRO B 677 0 SHEET 2 J 3 VAL B 684 ASP B 689 -1 O ARG B 688 N GLU B 674 SHEET 3 J 3 LEU B 695 THR B 700 -1 O GLY B 699 N PHE B 685 LINK C ALA A 110 N TOX A 111 1555 1555 1.42 LINK C ALA B 110 N TOX B 111 1555 1555 1.37 LINK NA NA B 801 O HOH B2222 1555 1555 2.31 LINK O GLY A 124 NA NA A 801 1555 1555 2.34 LINK O GLY B 124 NA NA B 801 1555 1555 2.34 LINK NA NA A 801 O HOH A1043 1555 1555 2.37 LINK O GLY A 122 NA NA A 801 1555 1555 2.38 LINK NA NA B 801 O HOH B2240 1555 1555 2.39 LINK O GLY B 122 NA NA B 801 1555 1555 2.40 LINK O SER A 494 NA NA A 801 1555 1555 2.42 LINK NA NA A 801 O HOH A1110 1555 1555 2.44 LINK O SER B 494 NA NA B 801 1555 1555 2.46 LINK C TOX A 111 N HIS A 112 1555 1555 1.45 LINK C TOX B 111 N HIS B 112 1555 1555 1.49 LINK NE2 HIS B 279 FE HEM B 803 1555 1555 2.25 LINK NE2 HIS A 279 FE HEM A 804 1555 1555 2.28 CISPEP 1 ALA A 134 PRO A 135 0 1.57 CISPEP 2 ASN A 227 PRO A 228 0 10.72 CISPEP 3 ALA A 508 PRO A 509 0 -1.99 CISPEP 4 ALA B 134 PRO B 135 0 0.94 CISPEP 5 ASN B 227 PRO B 228 0 8.61 CISPEP 6 ALA B 508 PRO B 509 0 -2.87 SITE 1 AC1 6 GLY A 122 ARG A 123 GLY A 124 SER A 494 SITE 2 AC1 6 HOH A1043 HOH A1110 SITE 1 AC2 5 GLY A 124 GLU A 198 VAL A 200 HOH A1033 SITE 2 AC2 5 HOH A1043 SITE 1 AC3 3 GLY A 63 ARG A 161 LYS B 727 SITE 1 AC4 19 GLY A 104 LEU A 105 TOX A 111 VAL A 239 SITE 2 AC4 19 PRO A 241 LEU A 274 ILE A 275 GLY A 278 SITE 3 AC4 19 HIS A 279 GLY A 282 LYS A 283 THR A 284 SITE 4 AC4 19 HIS A 285 THR A 323 SER A 324 TRP A 420 SITE 5 AC4 19 HOH A 909 HOH A 912 HOH A1004 SITE 1 AC5 3 PRO A 154 LYS A 158 HOH A 915 SITE 1 AC6 6 GLY B 122 ARG B 123 GLY B 124 SER B 494 SITE 2 AC6 6 HOH B2222 HOH B2240 SITE 1 AC7 5 GLY B 124 GLU B 198 VAL B 200 HOH B2013 SITE 2 AC7 5 HOH B2222 SITE 1 AC8 20 GLY B 104 LEU B 105 ILE B 107 TOX B 111 SITE 2 AC8 20 VAL B 239 LEU B 274 ILE B 275 GLY B 278 SITE 3 AC8 20 HIS B 279 GLY B 282 LYS B 283 THR B 284 SITE 4 AC8 20 HIS B 285 THR B 323 SER B 324 THR B 388 SITE 5 AC8 20 TRP B 420 HOH B2001 HOH B2002 HOH B2085 SITE 1 AC9 4 ALA B 143 THR B 323 SER B 324 HOH B2329 SITE 1 BC1 2 ASP B 83 HOH B2096 CRYST1 100.770 113.450 174.650 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009924 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008814 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005726 0.00000