HEADER HYDROLASE 22-APR-13 4KA8 TITLE STRUCTURE OF ORGANELLAR OLIGOPEPTIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: OLIGOPEPTIDASE A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS, THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PROTEASE, MITOCHONDRIA, CHLOROPLAST, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.P.-A.BERNTSSON,B.KMIEC,P.F.TEIXEIRA,L.M.SVENSSON,A.BAKALI,E.GLASER, AUTHOR 2 P.STENMARK REVDAT 3 20-MAR-24 4KA8 1 REMARK SEQADV LINK REVDAT 2 17-OCT-18 4KA8 1 JRNL REVDAT 1 18-SEP-13 4KA8 0 JRNL AUTH B.KMIEC,P.F.TEIXEIRA,R.P.BERNTSSON,M.W.MURCHA,R.M.BRANCA, JRNL AUTH 2 J.D.RADOMILJAC,J.REGBERG,L.M.SVENSSON,A.BAKALI,U.LANGEL, JRNL AUTH 3 J.LEHTIO,J.WHELAN,P.STENMARK,E.GLASER JRNL TITL ORGANELLAR OLIGOPEPTIDASE (OOP) PROVIDES A COMPLEMENTARY JRNL TITL 2 PATHWAY FOR TARGETING PEPTIDE DEGRADATION IN MITOCHONDRIA JRNL TITL 3 AND CHLOROPLASTS. JRNL REF PROC. NATL. ACAD. SCI. V. 110 E3761 2013 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 24043784 JRNL DOI 10.1073/PNAS.1307637110 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 76325 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3811 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5271 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.3170 REMARK 3 BIN FREE R VALUE SET COUNT : 275 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5536 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 376 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.57000 REMARK 3 B22 (A**2) : 3.29000 REMARK 3 B33 (A**2) : -2.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.131 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.122 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.403 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5806 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5506 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7874 ; 1.366 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12730 ; 0.803 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 720 ; 5.584 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 275 ;33.782 ;24.109 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1013 ;14.396 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;16.157 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 849 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6589 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1309 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 91 A 785 REMARK 3 ORIGIN FOR THE GROUP (A): 30.2777 6.7079 147.2600 REMARK 3 T TENSOR REMARK 3 T11: 0.0704 T22: 0.0071 REMARK 3 T33: 0.0865 T12: -0.0079 REMARK 3 T13: 0.0091 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.2560 L22: 0.1290 REMARK 3 L33: 0.4607 L12: 0.0434 REMARK 3 L13: -0.0681 L23: -0.0921 REMARK 3 S TENSOR REMARK 3 S11: -0.0412 S12: -0.0148 S13: -0.0325 REMARK 3 S21: -0.0009 S22: 0.0098 S23: -0.0041 REMARK 3 S31: 0.0405 S32: -0.0433 S33: 0.0314 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 4KA8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079086. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76412 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.806 REMARK 200 RESOLUTION RANGE LOW (A) : 80.586 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04200 REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.43500 REMARK 200 R SYM FOR SHELL (I) : 0.43500 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 5000 MME, 0.1M BIS-TRIS REMARK 280 -PROPANE, 0.2M NA-MALONATE, PH 6.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.90850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.45400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.66950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.45400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.90850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.66950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 78 REMARK 465 PRO A 79 REMARK 465 LEU A 80 REMARK 465 GLY A 81 REMARK 465 SER A 82 REMARK 465 ALA A 83 REMARK 465 ALA A 84 REMARK 465 ALA A 85 REMARK 465 VAL A 86 REMARK 465 GLU A 87 REMARK 465 SER A 88 REMARK 465 VAL A 89 REMARK 465 VAL A 90 REMARK 465 ALA A 786 REMARK 465 ALA A 787 REMARK 465 SER A 788 REMARK 465 ALA A 789 REMARK 465 SER A 790 REMARK 465 ALA A 791 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 91 OG REMARK 470 ASP A 92 CG OD1 OD2 REMARK 470 ASN A 303 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 614 OE1 GLU A 632 1.96 REMARK 500 NH1 ARG A 528 OD1 ASP A 585 2.05 REMARK 500 O HOH A 1174 O HOH A 1181 2.11 REMARK 500 O HOH A 949 O HOH A 1239 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 92 -32.20 69.96 REMARK 500 LEU A 146 -67.70 -133.32 REMARK 500 LYS A 171 51.84 -152.34 REMARK 500 LYS A 278 -33.29 -33.44 REMARK 500 SER A 298 12.18 -69.08 REMARK 500 HIS A 301 81.77 3.35 REMARK 500 ASN A 308 -53.40 -150.37 REMARK 500 SER A 425 64.17 -162.59 REMARK 500 ARG A 512 63.57 -150.19 REMARK 500 GLU A 515 -3.91 -141.89 REMARK 500 VAL A 525 -62.27 -101.54 REMARK 500 GLU A 596 127.89 -38.93 REMARK 500 THR A 665 -75.58 -125.98 REMARK 500 ALA A 706 44.50 -146.32 REMARK 500 THR A 751 -84.65 -122.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 806 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 379 O REMARK 620 2 LYS A 382 O 91.7 REMARK 620 3 ALA A 384 O 107.1 97.7 REMARK 620 4 HOH A1038 O 164.1 84.0 88.6 REMARK 620 5 HOH A1082 O 80.6 84.8 171.8 83.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 571 NE2 REMARK 620 2 HIS A 575 NE2 106.8 REMARK 620 3 GLU A 601 OE1 94.9 106.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 807 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KA7 RELATED DB: PDB REMARK 900 STRUCTURE OF AN INACTIVE VERSION OF THIS PROTEIN TOGETHER WITH AN REMARK 900 ENDOGENOUS LIGAND DBREF 4KA8 A 83 791 UNP Q9LSL3 Q9LSL3_ARATH 6 714 SEQADV 4KA8 GLY A 78 UNP Q9LSL3 EXPRESSION TAG SEQADV 4KA8 PRO A 79 UNP Q9LSL3 EXPRESSION TAG SEQADV 4KA8 LEU A 80 UNP Q9LSL3 EXPRESSION TAG SEQADV 4KA8 GLY A 81 UNP Q9LSL3 EXPRESSION TAG SEQADV 4KA8 SER A 82 UNP Q9LSL3 EXPRESSION TAG SEQRES 1 A 714 GLY PRO LEU GLY SER ALA ALA ALA VAL GLU SER VAL VAL SEQRES 2 A 714 SER ASP GLU THR LEU SER SER ASN PRO LEU LEU GLN ASP SEQRES 3 A 714 PHE ASP PHE PRO PRO PHE ASP SER VAL ASP ALA SER HIS SEQRES 4 A 714 VAL ARG PRO GLY ILE ARG ALA LEU LEU GLN HIS LEU GLU SEQRES 5 A 714 ALA GLU LEU GLU GLU LEU GLU LYS SER VAL GLU PRO THR SEQRES 6 A 714 TRP PRO LYS LEU VAL GLU PRO LEU GLU LYS ILE VAL ASP SEQRES 7 A 714 ARG LEU THR VAL VAL TRP GLY MET ILE ASN HIS LEU LYS SEQRES 8 A 714 ALA VAL LYS ASP THR PRO GLU LEU ARG ALA ALA ILE GLU SEQRES 9 A 714 ASP VAL GLN PRO GLU LYS VAL LYS PHE GLN LEU ARG LEU SEQRES 10 A 714 GLY GLN SER LYS PRO ILE TYR ASN ALA PHE LYS ALA ILE SEQRES 11 A 714 ARG GLU SER PRO ASP TRP SER SER LEU SER GLU ALA ARG SEQRES 12 A 714 GLN ARG LEU VAL GLU ALA GLN ILE LYS GLU ALA VAL LEU SEQRES 13 A 714 ILE GLY ILE ALA LEU ASP ASP GLU LYS ARG GLU GLU PHE SEQRES 14 A 714 ASN LYS ILE GLU GLN GLU LEU GLU LYS LEU SER HIS LYS SEQRES 15 A 714 PHE SER GLU ASN VAL LEU ASP ALA THR LYS LYS PHE GLU SEQRES 16 A 714 LYS LEU ILE THR ASP LYS LYS GLU ILE GLU GLY LEU PRO SEQRES 17 A 714 PRO SER ALA LEU GLY LEU PHE ALA GLN ALA ALA VAL SER SEQRES 18 A 714 LYS GLY HIS GLU ASN ALA THR ALA GLU ASN GLY PRO TRP SEQRES 19 A 714 ILE ILE THR LEU ASP ALA PRO SER TYR LEU PRO VAL MET SEQRES 20 A 714 GLN HIS ALA LYS ASN ARG ALA LEU ARG GLU GLU VAL TYR SEQRES 21 A 714 ARG ALA TYR LEU SER ARG ALA SER SER GLY ASP LEU ASP SEQRES 22 A 714 ASN THR ALA ILE ILE ASP GLN ILE LEU LYS LEU ARG LEU SEQRES 23 A 714 GLU LYS ALA LYS LEU LEU GLY TYR ASN ASN TYR ALA GLU SEQRES 24 A 714 VAL SER MET ALA MET LYS MET ALA THR VAL GLU LYS ALA SEQRES 25 A 714 ALA GLU LEU LEU GLU LYS LEU ARG SER ALA SER TRP ASP SEQRES 26 A 714 ALA ALA VAL GLN ASP MET GLU ASP LEU LYS SER PHE ALA SEQRES 27 A 714 LYS ASN GLN GLY ALA ALA GLU SER ASP SER MET THR HIS SEQRES 28 A 714 TRP ASP THR THR PHE TRP SER GLU ARG LEU ARG GLU SER SEQRES 29 A 714 LYS TYR ASP ILE ASN GLU GLU GLU LEU ARG PRO TYR PHE SEQRES 30 A 714 SER LEU PRO LYS VAL MET ASP GLY LEU PHE SER LEU ALA SEQRES 31 A 714 LYS THR LEU PHE GLY ILE ASP ILE GLU PRO ALA ASP GLY SEQRES 32 A 714 LEU ALA PRO VAL TRP ASN ASN ASP VAL ARG PHE TYR ARG SEQRES 33 A 714 VAL LYS ASP SER SER GLY ASN PRO ILE ALA TYR PHE TYR SEQRES 34 A 714 PHE ASP PRO TYR SER ARG PRO SER GLU LYS ARG GLY GLY SEQRES 35 A 714 ALA TRP MET ASP GLU VAL VAL SER ARG SER ARG VAL MET SEQRES 36 A 714 ALA GLN LYS GLY SER SER VAL ARG LEU PRO VAL ALA HIS SEQRES 37 A 714 MET VAL CYS ASN GLN THR PRO PRO VAL GLY ASP LYS PRO SEQRES 38 A 714 SER LEU MET THR PHE ARG GLU VAL GLU THR VAL PHE HIS SEQRES 39 A 714 GLU PHE GLY HIS ALA LEU GLN HIS MET LEU THR LYS GLN SEQRES 40 A 714 ASP GLU GLY LEU VAL ALA GLY ILE ARG ASN ILE GLU TRP SEQRES 41 A 714 ASP ALA VAL GLU LEU PRO SER GLN PHE MET GLU ASN TRP SEQRES 42 A 714 CYS TYR HIS ARG ASP THR LEU MET SER ILE ALA LYS HIS SEQRES 43 A 714 TYR GLU THR GLY GLU THR LEU PRO GLU GLU VAL TYR LYS SEQRES 44 A 714 LYS LEU LEU ALA ALA ARG THR PHE ARG ALA GLY SER PHE SEQRES 45 A 714 SER LEU ARG GLN LEU LYS PHE ALA SER VAL ASP LEU GLU SEQRES 46 A 714 LEU HIS THR LYS TYR VAL PRO GLY GLY PRO GLU SER ILE SEQRES 47 A 714 TYR ASP VAL ASP GLN ARG VAL SER VAL LYS THR GLN VAL SEQRES 48 A 714 ILE PRO PRO LEU PRO GLU ASP ARG PHE LEU CYS SER PHE SEQRES 49 A 714 SER HIS ILE PHE ALA GLY GLY TYR ALA ALA GLY TYR TYR SEQRES 50 A 714 SER TYR LYS TRP ALA GLU VAL LEU SER ALA ASP ALA PHE SEQRES 51 A 714 SER ALA PHE GLU ASP ALA GLY LEU ASP ASP ILE LYS ALA SEQRES 52 A 714 VAL LYS GLU THR GLY GLN ARG PHE ARG ASN THR ILE LEU SEQRES 53 A 714 ALA LEU GLY GLY GLY LYS ALA PRO LEU LYS VAL PHE VAL SEQRES 54 A 714 GLU PHE ARG GLY ARG GLU PRO SER PRO GLU PRO LEU LEU SEQRES 55 A 714 ARG HIS ASN GLY LEU LEU ALA ALA SER ALA SER ALA HET ZN A 801 1 HET GOL A 802 6 HET GOL A 803 6 HET GOL A 804 6 HET GOL A 805 6 HET NA A 806 1 HET CL A 807 1 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 GOL 4(C3 H8 O3) FORMUL 7 NA NA 1+ FORMUL 8 CL CL 1- FORMUL 9 HOH *376(H2 O) HELIX 1 1 THR A 94 GLN A 102 5 9 HELIX 2 2 ASP A 113 SER A 115 5 3 HELIX 3 3 HIS A 116 VAL A 139 1 24 HELIX 4 4 LEU A 146 LYS A 171 1 26 HELIX 5 5 THR A 173 GLN A 196 1 24 HELIX 6 6 SER A 197 GLU A 209 1 13 HELIX 7 7 ASP A 212 LEU A 216 5 5 HELIX 8 8 SER A 217 ILE A 234 1 18 HELIX 9 9 ASP A 239 PHE A 271 1 33 HELIX 10 10 ASP A 277 GLU A 282 5 6 HELIX 11 11 PRO A 285 SER A 298 1 14 HELIX 12 12 ASP A 316 ALA A 327 1 12 HELIX 13 13 ASN A 329 SER A 342 1 14 HELIX 14 14 SER A 346 ASP A 350 5 5 HELIX 15 15 ASN A 351 LEU A 369 1 19 HELIX 16 16 ASN A 373 ALA A 380 1 8 HELIX 17 17 THR A 385 GLN A 418 1 34 HELIX 18 18 GLY A 419 SER A 425 5 7 HELIX 19 19 THR A 427 ASP A 444 1 18 HELIX 20 20 ASN A 446 ARG A 451 1 6 HELIX 21 21 PRO A 452 PHE A 454 5 3 HELIX 22 22 SER A 455 GLY A 472 1 18 HELIX 23 23 THR A 562 LEU A 581 1 20 HELIX 24 24 GLU A 586 ALA A 590 5 5 HELIX 25 25 GLU A 596 VAL A 600 5 5 HELIX 26 26 GLU A 601 ASN A 609 1 9 HELIX 27 27 TRP A 610 TYR A 612 5 3 HELIX 28 28 HIS A 613 ALA A 621 1 9 HELIX 29 29 PRO A 631 ALA A 641 1 11 HELIX 30 30 ARG A 642 PHE A 644 5 3 HELIX 31 31 ARG A 645 HIS A 664 1 20 HELIX 32 32 SER A 674 GLN A 687 1 14 HELIX 33 33 ARG A 696 SER A 700 5 5 HELIX 34 34 PHE A 701 ALA A 706 1 6 HELIX 35 35 TYR A 714 GLY A 734 1 21 HELIX 36 36 ASP A 737 THR A 751 1 15 HELIX 37 37 ALA A 760 GLY A 770 1 11 HELIX 38 38 PRO A 775 ASN A 782 1 8 SHEET 1 A 2 LYS A 273 ILE A 275 0 SHEET 2 A 2 TRP A 311 ILE A 313 -1 O TRP A 311 N ILE A 275 SHEET 1 B 5 ASP A 474 PRO A 477 0 SHEET 2 B 5 ARG A 490 LYS A 495 -1 O ARG A 493 N GLU A 476 SHEET 3 B 5 PRO A 501 TYR A 510 -1 O ILE A 502 N VAL A 494 SHEET 4 B 5 VAL A 543 GLN A 550 1 O ALA A 544 N TYR A 506 SHEET 5 B 5 TRP A 521 VAL A 526 -1 N ASP A 523 O HIS A 545 LINK O MET A 379 NA NA A 806 1555 1555 2.31 LINK O LYS A 382 NA NA A 806 1555 1555 2.32 LINK O ALA A 384 NA NA A 806 1555 1555 2.36 LINK NE2 HIS A 571 ZN ZN A 801 1555 1555 2.09 LINK NE2 HIS A 575 ZN ZN A 801 1555 1555 2.17 LINK OE1 GLU A 601 ZN ZN A 801 1555 1555 1.96 LINK NA NA A 806 O HOH A1038 1555 1555 2.24 LINK NA NA A 806 O HOH A1082 1555 1555 2.50 SITE 1 AC1 4 HIS A 571 HIS A 575 GLU A 601 SER A 604 SITE 1 AC2 8 PRO A 141 THR A 142 LEU A 216 ALA A 478 SITE 2 AC2 8 ASP A 479 LEU A 481 ARG A 493 HOH A1051 SITE 1 AC3 7 GLN A 605 ASN A 609 ARG A 642 GLU A 720 SITE 2 AC3 7 HOH A 917 HOH A1000 HOH A1250 SITE 1 AC4 9 ASP A 105 PHE A 106 SER A 215 TYR A 504 SITE 2 AC4 9 ARG A 540 LEU A 541 VAL A 543 HOH A 930 SITE 3 AC4 9 HOH A1215 SITE 1 AC5 2 LEU A 392 TRP A 718 SITE 1 AC6 5 MET A 379 LYS A 382 ALA A 384 HOH A1038 SITE 2 AC6 5 HOH A1082 SITE 1 AC7 3 GLN A 196 ARG A 243 HOH A1103 CRYST1 71.817 101.339 132.908 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013924 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009868 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007524 0.00000