HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 22-APR-13 4KAK TITLE CRYSTAL STRUCTURE OF HUMAN DIHYDROFOLATE REDUCTASE COMPLEXED WITH TITLE 2 NADPH AND 6-ETHYL-5-[(3S)-3-[3-METHOXY-5-(PYRIDINE-4-YL)PHENYL]BUT-1- TITLE 3 YN-1-YL]PYRIMIDINE-2,4-DIAMINE (UCP1006) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.5.1.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 STRAIN: RP11-399L5; SOURCE 6 GENE: DHFR, HUDHFR; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET41A(+) KEYWDS OXIDOREDUCTASE, 5, 6, 7, 8-TETRAHYDROFOLATE; NADP+; 7, 8- KEYWDS 2 DIHYDROFOLATE, HYDRIDE SHIFT, OXIDOREDUCTASE-OXIDOREDUCTASE KEYWDS 3 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.M.LAMB,A.C.ANDERSON REVDAT 4 20-SEP-23 4KAK 1 REMARK LINK REVDAT 3 20-NOV-13 4KAK 1 HET HETATM HETNAM REMARK REVDAT 2 30-OCT-13 4KAK 1 JRNL REVDAT 1 09-OCT-13 4KAK 0 JRNL AUTH K.M.LAMB,N.G-DAYANANDAN,D.L.WRIGHT,A.C.ANDERSON JRNL TITL ELUCIDATING FEATURES THAT DRIVE THE DESIGN OF SELECTIVE JRNL TITL 2 ANTIFOLATES USING CRYSTAL STRUCTURES OF HUMAN DIHYDROFOLATE JRNL TITL 3 REDUCTASE. JRNL REF BIOCHEMISTRY V. 52 7318 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 24053334 JRNL DOI 10.1021/BI400852H REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 36923 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1845 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.0823 - 4.2295 0.98 2816 147 0.1716 0.1885 REMARK 3 2 4.2295 - 3.3583 0.99 2722 160 0.1666 0.2153 REMARK 3 3 3.3583 - 2.9341 1.00 2706 158 0.2185 0.2860 REMARK 3 4 2.9341 - 2.6660 1.00 2692 142 0.2490 0.3038 REMARK 3 5 2.6660 - 2.4750 1.00 2701 139 0.2503 0.3096 REMARK 3 6 2.4750 - 2.3291 1.00 2698 149 0.2562 0.3172 REMARK 3 7 2.3291 - 2.2125 0.99 2675 150 0.2742 0.3351 REMARK 3 8 2.2125 - 2.1162 1.00 2712 131 0.2709 0.3076 REMARK 3 9 2.1162 - 2.0347 1.00 2665 129 0.2737 0.3336 REMARK 3 10 2.0347 - 1.9645 1.00 2706 122 0.3078 0.4351 REMARK 3 11 1.9645 - 1.9031 1.00 2691 130 0.3102 0.3314 REMARK 3 12 1.9031 - 1.8487 0.99 2655 136 0.3310 0.3792 REMARK 3 13 1.8487 - 1.8001 1.00 2639 152 0.3318 0.3869 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KAK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079098. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : STRUCTURESTUDIO REMARK 200 DATA SCALING SOFTWARE : STRUCTURESTUDIO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37016 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 46.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.950 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.88 REMARK 200 R MERGE FOR SHELL (I) : 0.49200 REMARK 200 R SYM FOR SHELL (I) : 0.55400 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER FOR MR REMARK 200 STARTING MODEL: 2C2S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL PH 7.4, 0.2M LITHIUM REMARK 280 SULFATE, 30% (W/V) PEG 4000, 8% (V/V) ETHANOL, 11MM CACL2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.01950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.01950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.03850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.81700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.03850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.81700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.01950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.03850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.81700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 48.01950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.03850 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 46.81700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 346 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 405 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 110 -95.71 -91.78 REMARK 500 ASP A 110 -94.05 -91.78 REMARK 500 MET A 139 47.70 -89.20 REMARK 500 ASP B 110 -97.78 -89.14 REMARK 500 MET B 139 49.74 -89.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 206 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 3 OG REMARK 620 2 ASN A 5 OD1 124.5 REMARK 620 3 HOH A 381 O 86.5 97.0 REMARK 620 4 HOH A 438 O 121.7 110.8 104.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 207 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 383 O REMARK 620 2 GLU B 183 OE1 79.1 REMARK 620 3 HOH B 388 O 153.2 104.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 205 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG B 32 O REMARK 620 2 HOH B 390 O 138.8 REMARK 620 3 HOH B 428 O 95.2 98.6 REMARK 620 4 HOH B 438 O 88.8 122.1 109.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 206 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE B 138 O REMARK 620 2 HOH B 317 O 131.1 REMARK 620 3 HOH B 380 O 108.6 105.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 06U A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 06U B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 207 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KBN RELATED DB: PDB REMARK 900 RELATED ID: 4KD7 RELATED DB: PDB REMARK 900 RELATED ID: 4KEB RELATED DB: PDB REMARK 900 RELATED ID: 4KFJ RELATED DB: PDB DBREF 4KAK A 1 186 UNP P00374 DYR_HUMAN 2 187 DBREF 4KAK B 1 186 UNP P00374 DYR_HUMAN 2 187 SEQRES 1 A 186 VAL GLY SER LEU ASN CYS ILE VAL ALA VAL SER GLN ASN SEQRES 2 A 186 MET GLY ILE GLY LYS ASN GLY ASP LEU PRO TRP PRO PRO SEQRES 3 A 186 LEU ARG ASN GLU PHE ARG TYR PHE GLN ARG MET THR THR SEQRES 4 A 186 THR SER SER VAL GLU GLY LYS GLN ASN LEU VAL ILE MET SEQRES 5 A 186 GLY LYS LYS THR TRP PHE SER ILE PRO GLU LYS ASN ARG SEQRES 6 A 186 PRO LEU LYS GLY ARG ILE ASN LEU VAL LEU SER ARG GLU SEQRES 7 A 186 LEU LYS GLU PRO PRO GLN GLY ALA HIS PHE LEU SER ARG SEQRES 8 A 186 SER LEU ASP ASP ALA LEU LYS LEU THR GLU GLN PRO GLU SEQRES 9 A 186 LEU ALA ASN LYS VAL ASP MET VAL TRP ILE VAL GLY GLY SEQRES 10 A 186 SER SER VAL TYR LYS GLU ALA MET ASN HIS PRO GLY HIS SEQRES 11 A 186 LEU LYS LEU PHE VAL THR ARG ILE MET GLN ASP PHE GLU SEQRES 12 A 186 SER ASP THR PHE PHE PRO GLU ILE ASP LEU GLU LYS TYR SEQRES 13 A 186 LYS LEU LEU PRO GLU TYR PRO GLY VAL LEU SER ASP VAL SEQRES 14 A 186 GLN GLU GLU LYS GLY ILE LYS TYR LYS PHE GLU VAL TYR SEQRES 15 A 186 GLU LYS ASN ASP SEQRES 1 B 186 VAL GLY SER LEU ASN CYS ILE VAL ALA VAL SER GLN ASN SEQRES 2 B 186 MET GLY ILE GLY LYS ASN GLY ASP LEU PRO TRP PRO PRO SEQRES 3 B 186 LEU ARG ASN GLU PHE ARG TYR PHE GLN ARG MET THR THR SEQRES 4 B 186 THR SER SER VAL GLU GLY LYS GLN ASN LEU VAL ILE MET SEQRES 5 B 186 GLY LYS LYS THR TRP PHE SER ILE PRO GLU LYS ASN ARG SEQRES 6 B 186 PRO LEU LYS GLY ARG ILE ASN LEU VAL LEU SER ARG GLU SEQRES 7 B 186 LEU LYS GLU PRO PRO GLN GLY ALA HIS PHE LEU SER ARG SEQRES 8 B 186 SER LEU ASP ASP ALA LEU LYS LEU THR GLU GLN PRO GLU SEQRES 9 B 186 LEU ALA ASN LYS VAL ASP MET VAL TRP ILE VAL GLY GLY SEQRES 10 B 186 SER SER VAL TYR LYS GLU ALA MET ASN HIS PRO GLY HIS SEQRES 11 B 186 LEU LYS LEU PHE VAL THR ARG ILE MET GLN ASP PHE GLU SEQRES 12 B 186 SER ASP THR PHE PHE PRO GLU ILE ASP LEU GLU LYS TYR SEQRES 13 B 186 LYS LEU LEU PRO GLU TYR PRO GLY VAL LEU SER ASP VAL SEQRES 14 B 186 GLN GLU GLU LYS GLY ILE LYS TYR LYS PHE GLU VAL TYR SEQRES 15 B 186 GLU LYS ASN ASP HET NDP A 201 48 HET 06U A 202 28 HET EOH A 203 3 HET EOH A 204 3 HET EOH A 205 3 HET CA A 206 1 HET NDP B 201 48 HET 06U B 202 28 HET EOH B 203 3 HET EOH B 204 3 HET CA B 205 1 HET CA B 206 1 HET CA B 207 1 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM 06U 6-ETHYL-5-{(3R)-3-[3-METHOXY-5-(PYRIDIN-4-YL) HETNAM 2 06U PHENYL]BUT-1-YN-1-YL}PYRIMIDINE-2,4-DIAMINE HETNAM EOH ETHANOL HETNAM CA CALCIUM ION FORMUL 3 NDP 2(C21 H30 N7 O17 P3) FORMUL 4 06U 2(C22 H23 N5 O) FORMUL 5 EOH 5(C2 H6 O) FORMUL 8 CA 4(CA 2+) FORMUL 16 HOH *347(H2 O) HELIX 1 1 LEU A 27 THR A 40 1 14 HELIX 2 2 LYS A 54 ILE A 60 1 7 HELIX 3 3 PRO A 61 ARG A 65 5 5 HELIX 4 4 SER A 92 THR A 100 1 9 HELIX 5 5 GLY A 117 ASN A 126 1 10 HELIX 6 6 LEU B 27 THR B 40 1 14 HELIX 7 7 GLY B 53 ILE B 60 1 8 HELIX 8 8 PRO B 61 ARG B 65 5 5 HELIX 9 9 SER B 92 THR B 100 1 9 HELIX 10 10 GLY B 117 ASN B 126 1 10 SHEET 1 A 8 PHE A 88 SER A 90 0 SHEET 2 A 8 ILE A 71 LEU A 75 1 N VAL A 74 O PHE A 88 SHEET 3 A 8 GLN A 47 GLY A 53 1 N VAL A 50 O ILE A 71 SHEET 4 A 8 VAL A 109 ILE A 114 1 O TRP A 113 N LEU A 49 SHEET 5 A 8 SER A 3 VAL A 10 1 N ASN A 5 O ILE A 114 SHEET 6 A 8 HIS A 130 ILE A 138 1 O PHE A 134 N CYS A 6 SHEET 7 A 8 ILE A 175 LYS A 184 -1 O LYS A 178 N ARG A 137 SHEET 8 A 8 LYS A 157 LEU A 158 -1 N LYS A 157 O GLU A 183 SHEET 1 B 8 PHE A 88 SER A 90 0 SHEET 2 B 8 ILE A 71 LEU A 75 1 N VAL A 74 O PHE A 88 SHEET 3 B 8 GLN A 47 GLY A 53 1 N VAL A 50 O ILE A 71 SHEET 4 B 8 VAL A 109 ILE A 114 1 O TRP A 113 N LEU A 49 SHEET 5 B 8 SER A 3 VAL A 10 1 N ASN A 5 O ILE A 114 SHEET 6 B 8 HIS A 130 ILE A 138 1 O PHE A 134 N CYS A 6 SHEET 7 B 8 ILE A 175 LYS A 184 -1 O LYS A 178 N ARG A 137 SHEET 8 B 8 GLN A 170 GLU A 172 -1 N GLN A 170 O TYR A 177 SHEET 1 C 2 GLY A 15 GLY A 17 0 SHEET 2 C 2 THR A 146 PHE A 147 -1 O THR A 146 N ILE A 16 SHEET 1 D 8 PHE B 88 SER B 90 0 SHEET 2 D 8 ILE B 71 LEU B 75 1 N VAL B 74 O PHE B 88 SHEET 3 D 8 GLN B 47 MET B 52 1 N MET B 52 O LEU B 75 SHEET 4 D 8 VAL B 109 ILE B 114 1 O TRP B 113 N LEU B 49 SHEET 5 D 8 SER B 3 VAL B 10 1 N ASN B 5 O ILE B 114 SHEET 6 D 8 HIS B 130 ILE B 138 1 O PHE B 134 N CYS B 6 SHEET 7 D 8 ILE B 175 LYS B 184 -1 O TYR B 182 N LEU B 133 SHEET 8 D 8 LYS B 157 LEU B 158 -1 N LYS B 157 O GLU B 183 SHEET 1 E 8 PHE B 88 SER B 90 0 SHEET 2 E 8 ILE B 71 LEU B 75 1 N VAL B 74 O PHE B 88 SHEET 3 E 8 GLN B 47 MET B 52 1 N MET B 52 O LEU B 75 SHEET 4 E 8 VAL B 109 ILE B 114 1 O TRP B 113 N LEU B 49 SHEET 5 E 8 SER B 3 VAL B 10 1 N ASN B 5 O ILE B 114 SHEET 6 E 8 HIS B 130 ILE B 138 1 O PHE B 134 N CYS B 6 SHEET 7 E 8 ILE B 175 LYS B 184 -1 O TYR B 182 N LEU B 133 SHEET 8 E 8 GLN B 170 GLU B 172 -1 N GLN B 170 O TYR B 177 SHEET 1 F 2 GLY B 15 GLY B 17 0 SHEET 2 F 2 THR B 146 PHE B 147 -1 O THR B 146 N ILE B 16 LINK OG SER A 3 CA CA A 206 1555 1555 2.54 LINK OD1 ASN A 5 CA CA A 206 1555 1555 2.77 LINK CA CA A 206 O HOH A 381 1555 1555 2.47 LINK CA CA A 206 O HOH A 438 1555 1555 2.80 LINK O HOH A 383 CA CA B 207 1555 1555 2.62 LINK O ARG B 32 CA CA B 205 1555 1555 2.92 LINK O ILE B 138 CA CA B 206 1555 1555 2.94 LINK OE1 GLU B 183 CA CA B 207 1555 1555 2.71 LINK CA CA B 205 O HOH B 390 1555 1555 2.55 LINK CA CA B 205 O HOH B 428 1555 1555 2.83 LINK CA CA B 205 O HOH B 438 1555 1555 2.87 LINK CA CA B 206 O HOH B 317 1555 1555 2.59 LINK CA CA B 206 O HOH B 380 1555 1555 2.60 LINK CA CA B 207 O HOH B 388 1555 1555 2.53 CISPEP 1 ARG A 65 PRO A 66 0 -6.15 CISPEP 2 GLY A 116 GLY A 117 0 5.09 CISPEP 3 ARG B 65 PRO B 66 0 -6.45 CISPEP 4 GLY B 116 GLY B 117 0 2.24 SITE 1 AC1 29 VAL A 8 ALA A 9 ILE A 16 GLY A 17 SITE 2 AC1 29 GLY A 20 ASP A 21 LEU A 22 GLY A 53 SITE 3 AC1 29 LYS A 54 LYS A 55 THR A 56 SER A 59 SITE 4 AC1 29 LEU A 75 SER A 76 ARG A 77 GLU A 78 SITE 5 AC1 29 ARG A 91 VAL A 115 GLY A 117 SER A 118 SITE 6 AC1 29 SER A 119 VAL A 120 TYR A 121 GLU A 123 SITE 7 AC1 29 THR A 146 06U A 202 HOH A 326 HOH A 372 SITE 8 AC1 29 HOH A 416 SITE 1 AC2 16 ILE A 7 VAL A 8 ALA A 9 ASP A 21 SITE 2 AC2 16 GLU A 30 PHE A 31 PHE A 34 SER A 59 SITE 3 AC2 16 PRO A 61 ASN A 64 LEU A 67 VAL A 115 SITE 4 AC2 16 TYR A 121 THR A 136 NDP A 201 HOH A 454 SITE 1 AC3 5 ASP A 21 LEU A 22 TRP A 24 HOH A 380 SITE 2 AC3 5 GLU B 161 SITE 1 AC4 2 GLY A 2 GLU B 171 SITE 1 AC5 3 GLN A 47 LYS A 68 GLY A 69 SITE 1 AC6 5 SER A 3 ASN A 5 LYS A 132 HOH A 381 SITE 2 AC6 5 HOH A 438 SITE 1 AC7 30 VAL B 8 ALA B 9 ILE B 16 GLY B 17 SITE 2 AC7 30 GLY B 20 ASP B 21 TRP B 24 GLY B 53 SITE 3 AC7 30 LYS B 54 LYS B 55 THR B 56 SER B 59 SITE 4 AC7 30 LEU B 75 SER B 76 ARG B 77 GLU B 78 SITE 5 AC7 30 ARG B 91 VAL B 115 GLY B 117 SER B 118 SITE 6 AC7 30 SER B 119 VAL B 120 GLU B 123 THR B 146 SITE 7 AC7 30 06U B 202 HOH B 309 HOH B 320 HOH B 395 SITE 8 AC7 30 HOH B 409 HOH B 414 SITE 1 AC8 13 ILE B 7 VAL B 8 ALA B 9 ASP B 21 SITE 2 AC8 13 GLU B 30 PHE B 31 PHE B 34 SER B 59 SITE 3 AC8 13 PRO B 61 ASN B 64 VAL B 115 THR B 136 SITE 4 AC8 13 NDP B 201 SITE 1 AC9 3 LYS A 157 PRO B 61 GLU B 62 SITE 1 BC1 2 GLU A 62 LYS B 157 SITE 1 BC2 4 ARG B 32 HOH B 390 HOH B 428 HOH B 438 SITE 1 BC3 6 VAL B 10 GLN B 12 ARG B 137 ILE B 138 SITE 2 BC3 6 HOH B 317 HOH B 380 SITE 1 BC4 6 PRO A 25 LYS A 173 HOH A 383 TYR B 162 SITE 2 BC4 6 GLU B 183 HOH B 388 CRYST1 88.077 93.634 96.039 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011354 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010680 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010412 0.00000