HEADER TRANSFERASE 23-APR-13 4KAV TITLE CRYSTAL STRUCTURE OF THE SOLUBLE DOMAIN OF LIPOOLIGOSACCHARIDE TITLE 2 PHOSPHOETHANOLAMINE TRANSFERASE A FROM NEISSERIA MENINGITIDIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: YHBX/YHJW/YIJP/YJDB FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PERIPLASMIC SOLUBLE DOMAIN (UNP RESIDUES 210-544); COMPND 5 EC: 3.1.3.27; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS; SOURCE 3 ORGANISM_TAXID: 122586; SOURCE 4 STRAIN: NMB; SOURCE 5 GENE: LPTA, NMB1638; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCMK527 KEYWDS ENDOTOXIN BIOSYNTHESIS, LPTA, PHOSPHOETHANOLAMINE TRANSFERASE, KEYWDS 2 POLYMYXIN RESISTANCE, HYDROLASE, PHOSPHOTRANSFERASE, PHOSPHOTRANSFER KEYWDS 3 REACTION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.VRIELINK,C.WANTY REVDAT 3 15-NOV-17 4KAV 1 REMARK REVDAT 2 23-OCT-13 4KAV 1 JRNL REVDAT 1 24-JUL-13 4KAV 0 JRNL AUTH C.WANTY,A.ANANDAN,S.PIEK,J.WALSHE,J.GANGULY,R.W.CARLSON, JRNL AUTH 2 K.A.STUBBS,C.M.KAHLER,A.VRIELINK JRNL TITL THE STRUCTURE OF THE NEISSERIAL LIPOOLIGOSACCHARIDE JRNL TITL 2 PHOSPHOETHANOLAMINE TRANSFERASE A (LPTA) REQUIRED FOR JRNL TITL 3 RESISTANCE TO POLYMYXIN. JRNL REF J.MOL.BIOL. V. 425 3389 2013 JRNL REFN ISSN 0022-2836 JRNL PMID 23810904 JRNL DOI 10.1016/J.JMB.2013.06.029 REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 3 NUMBER OF REFLECTIONS : 49289 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.118 REMARK 3 R VALUE (WORKING SET) : 0.116 REMARK 3 FREE R VALUE : 0.157 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 2653 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.2569 - 3.8139 0.99 2791 143 0.1276 0.1312 REMARK 3 2 3.8139 - 3.0310 0.98 2793 127 0.1201 0.1485 REMARK 3 3 3.0310 - 2.6490 0.98 2754 148 0.1268 0.1566 REMARK 3 4 2.6490 - 2.4073 0.98 2752 149 0.1135 0.1624 REMARK 3 5 2.4073 - 2.2350 0.98 2745 149 0.1051 0.1430 REMARK 3 6 2.2350 - 2.1034 0.97 2734 149 0.1037 0.1461 REMARK 3 7 2.1034 - 1.9982 0.97 2735 142 0.1062 0.1547 REMARK 3 8 1.9982 - 1.9113 0.97 2706 146 0.1013 0.1486 REMARK 3 9 1.9113 - 1.8378 0.96 2703 156 0.1045 0.1668 REMARK 3 10 1.8378 - 1.7744 0.96 2689 154 0.1050 0.1479 REMARK 3 11 1.7744 - 1.7190 0.96 2682 162 0.1006 0.1639 REMARK 3 12 1.7190 - 1.6699 0.96 2655 145 0.0991 0.1492 REMARK 3 13 1.6699 - 1.6259 0.95 2701 155 0.1046 0.1745 REMARK 3 14 1.6259 - 1.5863 0.95 2703 150 0.1052 0.1701 REMARK 3 15 1.5863 - 1.5502 0.95 2635 141 0.1118 0.1772 REMARK 3 16 1.5502 - 1.5172 0.95 2682 134 0.1174 0.1869 REMARK 3 17 1.5172 - 1.4869 0.86 2421 116 0.1334 0.1896 REMARK 3 18 1.4869 - 1.4589 0.69 1947 104 0.1592 0.1928 REMARK 3 19 1.4589 - 1.4328 0.51 1430 83 0.2560 0.3113 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.75240 REMARK 3 B22 (A**2) : 0.44660 REMARK 3 B33 (A**2) : 0.30590 REMARK 3 B12 (A**2) : -1.44260 REMARK 3 B13 (A**2) : -0.91000 REMARK 3 B23 (A**2) : 1.04710 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.026 2993 REMARK 3 ANGLE : 1.411 4103 REMARK 3 CHIRALITY : 0.083 450 REMARK 3 PLANARITY : 0.007 543 REMARK 3 DIHEDRAL : 14.462 1150 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 210:227) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0652 -2.5937 -20.4402 REMARK 3 T TENSOR REMARK 3 T11: 0.0977 T22: 0.1052 REMARK 3 T33: 0.0700 T12: 0.0023 REMARK 3 T13: -0.0092 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 0.8803 L22: 5.8481 REMARK 3 L33: 1.4322 L12: -1.2653 REMARK 3 L13: 0.6096 L23: -1.5927 REMARK 3 S TENSOR REMARK 3 S11: 0.1663 S12: 0.0377 S13: -0.0754 REMARK 3 S21: -0.6683 S22: -0.1877 S23: -0.0870 REMARK 3 S31: 0.2108 S32: 0.1591 S33: 0.0294 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 228:296) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3670 -0.7678 2.6190 REMARK 3 T TENSOR REMARK 3 T11: 0.0178 T22: 0.0217 REMARK 3 T33: 0.0251 T12: -0.0051 REMARK 3 T13: 0.0018 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.3954 L22: 0.2380 REMARK 3 L33: 0.8580 L12: 0.0230 REMARK 3 L13: 0.0421 L23: -0.1730 REMARK 3 S TENSOR REMARK 3 S11: -0.0070 S12: 0.0067 S13: -0.0107 REMARK 3 S21: 0.0102 S22: 0.0126 S23: 0.0227 REMARK 3 S31: 0.0493 S32: -0.0910 S33: 0.0018 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 297:305) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5500 -14.8148 -12.5881 REMARK 3 T TENSOR REMARK 3 T11: 0.1043 T22: 0.1036 REMARK 3 T33: 0.1612 T12: 0.0459 REMARK 3 T13: 0.0377 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 6.5437 L22: 4.9956 REMARK 3 L33: 4.5583 L12: -0.4669 REMARK 3 L13: -0.5274 L23: -0.4542 REMARK 3 S TENSOR REMARK 3 S11: -0.0138 S12: -0.3395 S13: -0.7947 REMARK 3 S21: 0.1766 S22: -0.0015 S23: 0.2512 REMARK 3 S31: 0.4000 S32: 0.1330 S33: 0.0084 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 306:343) REMARK 3 ORIGIN FOR THE GROUP (A): 18.8484 0.1757 -4.9393 REMARK 3 T TENSOR REMARK 3 T11: 0.0304 T22: 0.0835 REMARK 3 T33: 0.0484 T12: -0.0004 REMARK 3 T13: 0.0079 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 1.1708 L22: 0.3377 REMARK 3 L33: 2.0637 L12: 0.1367 REMARK 3 L13: 0.9942 L23: 0.2187 REMARK 3 S TENSOR REMARK 3 S11: 0.0740 S12: 0.0225 S13: -0.1084 REMARK 3 S21: 0.0192 S22: 0.0155 S23: -0.0649 REMARK 3 S31: 0.1064 S32: 0.3000 S33: -0.0583 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 344:356) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8707 4.1426 13.6405 REMARK 3 T TENSOR REMARK 3 T11: 0.0768 T22: 0.0986 REMARK 3 T33: 0.0625 T12: -0.0160 REMARK 3 T13: -0.0178 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 5.2491 L22: 4.0017 REMARK 3 L33: 2.3937 L12: -0.7104 REMARK 3 L13: 0.5095 L23: 0.9159 REMARK 3 S TENSOR REMARK 3 S11: -0.0527 S12: -0.1832 S13: -0.0166 REMARK 3 S21: 0.3693 S22: 0.0532 S23: -0.2383 REMARK 3 S31: 0.0235 S32: 0.3061 S33: -0.0159 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 357:371) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0193 13.3395 -3.0108 REMARK 3 T TENSOR REMARK 3 T11: 0.0748 T22: 0.0783 REMARK 3 T33: 0.0699 T12: -0.0347 REMARK 3 T13: -0.0050 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.2815 L22: 1.3466 REMARK 3 L33: 5.2979 L12: -0.4879 REMARK 3 L13: 1.1288 L23: -2.5797 REMARK 3 S TENSOR REMARK 3 S11: -0.0802 S12: 0.0736 S13: 0.0613 REMARK 3 S21: -0.0123 S22: -0.1404 S23: -0.1827 REMARK 3 S31: -0.1723 S32: 0.3261 S33: 0.1703 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 372:432) REMARK 3 ORIGIN FOR THE GROUP (A): 11.4045 -0.1101 18.0979 REMARK 3 T TENSOR REMARK 3 T11: 0.0327 T22: 0.0311 REMARK 3 T33: 0.0213 T12: 0.0002 REMARK 3 T13: -0.0128 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.5288 L22: 0.4116 REMARK 3 L33: 1.3213 L12: 0.2060 REMARK 3 L13: -0.3742 L23: -0.0712 REMARK 3 S TENSOR REMARK 3 S11: -0.0008 S12: -0.1062 S13: -0.0295 REMARK 3 S21: 0.0919 S22: -0.0419 S23: -0.0433 REMARK 3 S31: 0.0503 S32: 0.0757 S33: 0.0173 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 433:462) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2907 4.0441 5.3425 REMARK 3 T TENSOR REMARK 3 T11: 0.0143 T22: -0.0128 REMARK 3 T33: 0.0013 T12: -0.0106 REMARK 3 T13: 0.0128 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.6747 L22: 1.8420 REMARK 3 L33: 1.4234 L12: -0.2598 REMARK 3 L13: 0.2888 L23: -0.4786 REMARK 3 S TENSOR REMARK 3 S11: 0.0383 S12: -0.0227 S13: 0.0150 REMARK 3 S21: 0.1715 S22: -0.0317 S23: 0.1331 REMARK 3 S31: -0.1052 S32: -0.0203 S33: -0.0539 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 463:481) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7047 -12.0012 8.9034 REMARK 3 T TENSOR REMARK 3 T11: 0.0967 T22: 0.0539 REMARK 3 T33: 0.0407 T12: -0.0155 REMARK 3 T13: -0.0001 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 1.4777 L22: 1.7250 REMARK 3 L33: 1.0194 L12: 0.0011 REMARK 3 L13: 0.2650 L23: 0.1757 REMARK 3 S TENSOR REMARK 3 S11: 0.0852 S12: 0.0062 S13: -0.1675 REMARK 3 S21: -0.0650 S22: -0.0102 S23: 0.1186 REMARK 3 S31: 0.3220 S32: -0.0294 S33: -0.0670 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 482:502) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1677 12.5781 -3.5442 REMARK 3 T TENSOR REMARK 3 T11: 0.0235 T22: 0.0265 REMARK 3 T33: 0.0549 T12: 0.0185 REMARK 3 T13: 0.0033 T23: 0.0394 REMARK 3 L TENSOR REMARK 3 L11: 0.6305 L22: 0.8773 REMARK 3 L33: 1.8992 L12: 0.0123 REMARK 3 L13: -0.2094 L23: -0.2853 REMARK 3 S TENSOR REMARK 3 S11: 0.0136 S12: 0.1280 S13: 0.1187 REMARK 3 S21: -0.0384 S22: 0.0257 S23: 0.1858 REMARK 3 S31: -0.0830 S32: -0.2570 S33: -0.1340 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 503:523) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7906 0.4889 -6.4991 REMARK 3 T TENSOR REMARK 3 T11: 0.0127 T22: 0.0607 REMARK 3 T33: 0.0428 T12: -0.0061 REMARK 3 T13: -0.0121 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 0.9057 L22: 0.7847 REMARK 3 L33: 1.0933 L12: -0.3522 REMARK 3 L13: -0.2780 L23: 0.0662 REMARK 3 S TENSOR REMARK 3 S11: 0.0186 S12: -0.0078 S13: 0.0318 REMARK 3 S21: -0.0205 S22: 0.0375 S23: 0.0532 REMARK 3 S31: -0.0814 S32: -0.1145 S33: -0.0447 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 524:543) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2583 1.5834 -13.8495 REMARK 3 T TENSOR REMARK 3 T11: 0.0667 T22: 0.1041 REMARK 3 T33: 0.0473 T12: -0.0118 REMARK 3 T13: -0.0234 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 2.5211 L22: 2.5069 REMARK 3 L33: 2.5813 L12: -0.2876 REMARK 3 L13: -0.7033 L23: 0.9800 REMARK 3 S TENSOR REMARK 3 S11: -0.0015 S12: 0.2238 S13: 0.0479 REMARK 3 S21: -0.2217 S22: 0.0101 S23: 0.1016 REMARK 3 S31: -0.0299 S32: -0.1709 S33: -0.0042 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KAV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000079108. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5-8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97884, 0.9686 REMARK 200 MONOCHROMATOR : UNDULATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49289 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.433 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: (23 26% PEG 8K, 100 MM AMMONIUM REMARK 280 SULFATE, 100 MM HEPES), 15 MM N-DODECYL-N,N-DIMETHYLAMINE- N- REMARK 280 OXIDE (DDAO), PH 7.5-8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 544 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1085 O HOH A 1153 1.83 REMARK 500 O HOH A 1189 O HOH A 1190 1.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 224 59.67 -117.87 REMARK 500 ALA A 227 -91.56 -29.48 REMARK 500 THR A 241 -19.67 68.41 REMARK 500 SER A 325 -6.74 73.63 REMARK 500 ASP A 403 51.31 -101.33 REMARK 500 ASP A 403 51.31 -103.77 REMARK 500 HIS A 453 175.31 178.94 REMARK 500 LEU A 464 -146.14 55.54 REMARK 500 HIS A 465 -147.24 -139.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PO4 A 603 O1 REMARK 620 2 GLU A 240 OE1 118.3 REMARK 620 3 ASP A 452 OD2 114.6 115.6 REMARK 620 4 HIS A 453 NE2 105.8 101.6 96.7 REMARK 620 5 TPO A 280 O2P 40.9 80.3 153.1 101.2 REMARK 620 6 TPO A 280 OG1 29.1 129.7 87.1 120.7 66.6 REMARK 620 7 GLU A 240 OE2 96.8 54.9 85.6 153.7 87.1 85.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 602 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 303 NE2 REMARK 620 2 SER A 210 N 105.0 REMARK 620 3 ASN A 211 N 112.8 78.7 REMARK 620 4 ASN A 211 OD1 82.5 159.7 80.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 605 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 729 O REMARK 620 2 PHE A 291 O 80.9 REMARK 620 3 HOH A 701 O 83.2 159.7 REMARK 620 4 SER A 289 O 102.2 99.0 96.7 REMARK 620 5 HOH A 711 O 97.4 81.8 87.7 160.3 REMARK 620 6 CYS A 286 O 172.7 94.2 100.3 83.8 76.5 REMARK 620 7 CYS A 286 O 173.7 93.9 100.9 82.1 78.2 1.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 604 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 854 O REMARK 620 2 GLU A 393 O 122.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 606 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 940 O REMARK 620 2 GLU A 352 OE2 86.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DDQ A 607 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KAY RELATED DB: PDB DBREF 4KAV A 210 544 UNP Q7DD94 Q7DD94_NEIMB 210 544 SEQRES 1 A 335 SER ASN ILE PRO TYR THR GLN LEU ASP MSE ALA VAL VAL SEQRES 2 A 335 GLN ASN ARG PRO ALA GLY SER LEU ARG ARG PHE VAL VAL SEQRES 3 A 335 LEU VAL VAL GLY GLU THR THR ARG ALA ALA ASN TRP GLY SEQRES 4 A 335 LEU ASN GLY TYR SER ARG GLN THR THR PRO LEU LEU ALA SEQRES 5 A 335 ALA ARG GLY ASP GLU ILE VAL ASN PHE PRO GLN VAL ARG SEQRES 6 A 335 SER CYS GLY THR SER TPO ALA HIS SER LEU PRO CYS MSE SEQRES 7 A 335 PHE SER THR PHE ASP ARG THR ASP TYR ASP GLU ILE LYS SEQRES 8 A 335 ALA GLU HIS GLN ASP ASN LEU LEU ASP ILE VAL GLN ARG SEQRES 9 A 335 ALA GLY VAL GLU VAL THR TRP LEU GLU ASN ASP SER GLY SEQRES 10 A 335 CYS LYS GLY VAL CYS GLY LYS VAL PRO ASN THR ASP VAL SEQRES 11 A 335 THR SER LEU ASN LEU PRO GLU TYR CYS ARG ASN GLY GLU SEQRES 12 A 335 CYS LEU ASP ASN ILE LEU LEU THR LYS PHE ASP GLU VAL SEQRES 13 A 335 LEU ASN LYS ASN ASP LYS ASP ALA VAL LEU ILE LEU HIS SEQRES 14 A 335 THR ILE GLY SER HIS GLY PRO THR TYR TYR GLU ARG TYR SEQRES 15 A 335 THR GLU ALA GLU ARG LYS PHE THR PRO THR CYS ASP THR SEQRES 16 A 335 ASN GLU ILE ASN LYS CYS THR ARG ALA THR LEU VAL ASN SEQRES 17 A 335 THR TYR ASP ASN THR VAL LEU TYR VAL ASP GLN PHE ILE SEQRES 18 A 335 ASP LYS VAL ILE ARG LYS LEU GLU ASN ARG ASP ASP LEU SEQRES 19 A 335 GLU SER VAL VAL HIS TYR VAL SER ASP HIS GLY GLU SER SEQRES 20 A 335 LEU GLY GLU ASN GLY MSE TYR LEU HIS ALA ALA PRO TYR SEQRES 21 A 335 ALA ILE ALA PRO SER GLY GLN THR HIS ILE PRO MSE VAL SEQRES 22 A 335 MSE TRP PHE SER LYS ALA PHE ARG GLN HIS GLY GLY ILE SEQRES 23 A 335 ASP PHE GLN CYS LEU LYS GLN LYS ALA ALA GLU ASN GLU SEQRES 24 A 335 TYR SER HIS ASP HIS TYR PHE SER THR VAL LEU GLY LEU SEQRES 25 A 335 MSE ASP ILE SER ASN SER GLN THR TYR ARG LYS GLU MSE SEQRES 26 A 335 ASP ILE LEU ALA ALA CYS ARG ARG PRO ARG MODRES 4KAV MSE A 219 MET SELENOMETHIONINE MODRES 4KAV TPO A 280 THR PHOSPHOTHREONINE MODRES 4KAV MSE A 287 MET SELENOMETHIONINE MODRES 4KAV MSE A 462 MET SELENOMETHIONINE MODRES 4KAV MSE A 481 MET SELENOMETHIONINE MODRES 4KAV MSE A 483 MET SELENOMETHIONINE MODRES 4KAV MSE A 522 MET SELENOMETHIONINE MODRES 4KAV MSE A 534 MET SELENOMETHIONINE HET MSE A 219 31 HET TPO A 280 30 HET MSE A 287 17 HET MSE A 462 34 HET MSE A 481 17 HET MSE A 483 34 HET MSE A 522 34 HET MSE A 534 34 HET ZN A 601 1 HET CU A 602 1 HET PO4 A 603 5 HET NA A 604 1 HET MG A 605 1 HET NA A 606 1 HET DDQ A 607 82 HETNAM MSE SELENOMETHIONINE HETNAM TPO PHOSPHOTHREONINE HETNAM ZN ZINC ION HETNAM CU COPPER (II) ION HETNAM PO4 PHOSPHATE ION HETNAM NA SODIUM ION HETNAM MG MAGNESIUM ION HETNAM DDQ DECYLAMINE-N,N-DIMETHYL-N-OXIDE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 1 TPO C4 H10 N O6 P FORMUL 2 ZN ZN 2+ FORMUL 3 CU CU 2+ FORMUL 4 PO4 O4 P 3- FORMUL 5 NA 2(NA 1+) FORMUL 6 MG MG 2+ FORMUL 8 DDQ C12 H27 N O FORMUL 9 HOH *493(H2 O) HELIX 1 1 ARG A 243 GLY A 251 5 9 HELIX 2 2 THR A 257 ARG A 263 1 7 HELIX 3 3 SER A 279 PHE A 288 1 10 HELIX 4 4 ASP A 292 TYR A 296 5 5 HELIX 5 5 ASP A 297 HIS A 303 1 7 HELIX 6 6 ASN A 306 ALA A 314 1 9 HELIX 7 7 THR A 340 ASN A 343 5 4 HELIX 8 8 ASP A 355 THR A 360 5 6 HELIX 9 9 LYS A 361 ASN A 367 1 7 HELIX 10 10 THR A 386 TYR A 391 5 6 HELIX 11 11 THR A 392 ARG A 396 5 5 HELIX 12 12 GLU A 406 CYS A 410 5 5 HELIX 13 13 THR A 411 GLU A 438 1 28 HELIX 14 14 GLU A 459 GLY A 461 5 3 HELIX 15 15 PRO A 468 ALA A 472 5 5 HELIX 16 16 PRO A 473 HIS A 478 1 6 HELIX 17 17 SER A 486 GLY A 493 1 8 HELIX 18 18 ASP A 496 ASN A 507 1 12 HELIX 19 19 HIS A 513 MSE A 522 1 10 HELIX 20 20 ARG A 531 ASP A 535 5 5 HELIX 21 21 LEU A 537 ARG A 541 5 5 SHEET 1 A 2 VAL A 222 GLN A 223 0 SHEET 2 A 2 ILE A 524 SER A 525 -1 O SER A 525 N VAL A 222 SHEET 1 B 7 ILE A 267 ASN A 269 0 SHEET 2 B 7 MSE A 481 PHE A 485 -1 O MSE A 483 N VAL A 268 SHEET 3 B 7 GLU A 444 SER A 451 -1 N TYR A 449 O VAL A 482 SHEET 4 B 7 ARG A 232 GLY A 239 1 N VAL A 237 O HIS A 448 SHEET 5 B 7 ALA A 373 HIS A 378 1 O LEU A 375 N VAL A 234 SHEET 6 B 7 GLU A 317 GLU A 322 1 N LEU A 321 O ILE A 376 SHEET 7 B 7 ASN A 336 ASP A 338 1 O THR A 337 N GLU A 322 SHEET 1 C 2 VAL A 273 ARG A 274 0 SHEET 2 C 2 TYR A 509 SER A 510 1 O TYR A 509 N ARG A 274 SHEET 1 D 2 CYS A 348 ARG A 349 0 SHEET 2 D 2 GLU A 352 CYS A 353 -1 O GLU A 352 N ARG A 349 SHEET 1 E 2 SER A 456 LEU A 457 0 SHEET 2 E 2 TYR A 463 LEU A 464 -1 O LEU A 464 N SER A 456 SSBOND 1 CYS A 276 CYS A 286 1555 1555 2.07 SSBOND 2 CYS A 327 CYS A 331 1555 1555 2.06 SSBOND 3 CYS A 348 CYS A 353 1555 1555 2.04 SSBOND 4 CYS A 402 CYS A 410 1555 1555 1.96 SSBOND 5 CYS A 499 CYS A 540 1555 1555 2.09 LINK C ASP A 218 N MSE A 219 1555 1555 1.32 LINK C MSE A 219 N ALA A 220 1555 1555 1.33 LINK C SER A 279 N ATPO A 280 1555 1555 1.34 LINK C SER A 279 N BTPO A 280 1555 1555 1.31 LINK C ATPO A 280 N ALA A 281 1555 1555 1.32 LINK C BTPO A 280 N ALA A 281 1555 1555 1.34 LINK C ACYS A 286 N MSE A 287 1555 1555 1.33 LINK C BCYS A 286 N MSE A 287 1555 1555 1.32 LINK C MSE A 287 N PHE A 288 1555 1555 1.33 LINK C GLY A 461 N AMSE A 462 1555 1555 1.33 LINK C GLY A 461 N BMSE A 462 1555 1555 1.34 LINK C AMSE A 462 N TYR A 463 1555 1555 1.33 LINK C BMSE A 462 N TYR A 463 1555 1555 1.33 LINK C PRO A 480 N MSE A 481 1555 1555 1.33 LINK C MSE A 481 N VAL A 482 1555 1555 1.33 LINK C VAL A 482 N AMSE A 483 1555 1555 1.32 LINK C VAL A 482 N BMSE A 483 1555 1555 1.33 LINK C AMSE A 483 N TRP A 484 1555 1555 1.32 LINK C BMSE A 483 N TRP A 484 1555 1555 1.33 LINK C LEU A 521 N AMSE A 522 1555 1555 1.33 LINK C LEU A 521 N BMSE A 522 1555 1555 1.33 LINK C AMSE A 522 N ASP A 523 1555 1555 1.33 LINK C BMSE A 522 N ASP A 523 1555 1555 1.33 LINK C GLU A 533 N AMSE A 534 1555 1555 1.33 LINK C GLU A 533 N BMSE A 534 1555 1555 1.33 LINK C AMSE A 534 N ASP A 535 1555 1555 1.34 LINK C BMSE A 534 N ASP A 535 1555 1555 1.32 LINK ZN ZN A 601 O1 CPO4 A 603 1555 1555 1.84 LINK OE1 GLU A 240 ZN ZN A 601 1555 1555 2.02 LINK OD2 ASP A 452 ZN ZN A 601 1555 1555 2.03 LINK NE2 HIS A 453 ZN ZN A 601 1555 1555 2.06 LINK NE2 HIS A 303 CU CU A 602 1555 1555 2.11 LINK N SER A 210 CU CU A 602 1555 1555 2.15 LINK N ASN A 211 CU CU A 602 1555 1555 2.16 LINK OD1BASN A 211 CU CU A 602 1555 1555 2.25 LINK O2PBTPO A 280 ZN ZN A 601 1555 1555 2.26 LINK OG1BTPO A 280 ZN ZN A 601 1555 1555 2.29 LINK MG MG A 605 O HOH A 729 1555 1555 2.31 LINK O PHE A 291 MG MG A 605 1555 1555 2.34 LINK MG MG A 605 O HOH A 701 1555 1555 2.37 LINK O SER A 289 MG MG A 605 1555 1555 2.40 LINK MG MG A 605 O HOH A 711 1555 1555 2.43 LINK NA NA A 604 O HOH A 854 1555 1555 2.44 LINK OE2 GLU A 240 ZN ZN A 601 1555 1555 2.50 LINK NA NA A 606 O HOH A 940 1555 1555 2.52 LINK OE2 GLU A 352 NA NA A 606 1555 1555 2.58 LINK O ACYS A 286 MG MG A 605 1555 1555 2.64 LINK O GLU A 393 NA NA A 604 1555 1555 2.68 LINK O BCYS A 286 MG MG A 605 1555 1555 2.72 CISPEP 1 GLY A 384 PRO A 385 0 5.11 CISPEP 2 THR A 399 PRO A 400 0 -6.04 CISPEP 3 THR A 399 PRO A 400 0 2.05 SITE 1 AC1 5 GLU A 240 TPO A 280 ASP A 452 HIS A 453 SITE 2 AC1 5 PO4 A 603 SITE 1 AC2 4 SER A 210 ASN A 211 HIS A 303 HIS A 492 SITE 1 AC3 11 GLU A 240 HIS A 383 ASP A 452 HIS A 453 SITE 2 AC3 11 HIS A 465 ZN A 601 HOH A 759 HOH A 871 SITE 3 AC3 11 HOH A 943 HOH A 995 HOH A1118 SITE 1 AC4 4 GLU A 393 ARG A 396 HOH A 735 HOH A 854 SITE 1 AC5 6 CYS A 286 SER A 289 PHE A 291 HOH A 701 SITE 2 AC5 6 HOH A 711 HOH A 729 SITE 1 AC6 5 GLU A 352 HIS A 383 GLY A 384 ARG A 390 SITE 2 AC6 5 HOH A 940 SITE 1 AC7 12 LEU A 230 THR A 294 ASP A 295 ASN A 367 SITE 2 AC7 12 ASP A 370 PRO A 400 THR A 411 THR A 414 SITE 3 AC7 12 HOH A 724 HOH A 741 HOH A 822 HOH A1156 CRYST1 43.696 44.923 50.179 70.26 69.36 61.13 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022885 -0.012618 -0.006171 0.00000 SCALE2 0.000000 0.025420 -0.005310 0.00000 SCALE3 0.000000 0.000000 0.021755 0.00000