HEADER OXIDOREDUCTASE 25-APR-13 4KDE TITLE CRYSTAL STRUCTURE OF THE APO FORM OF THERMUS THERMOPHILUS MALATE TITLE 2 DEHYDROGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: MALATE DEHYDROGENASE; COMPND 5 EC: 1.1.1.37; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 GENE: MDH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(ED3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET-21 KEYWDS DEHYDROGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.-H.HSU,C.-H.HONG,Y.-Y.CHANG REVDAT 2 28-FEB-24 4KDE 1 SEQADV REVDAT 1 05-FEB-14 4KDE 0 JRNL AUTH C.H.HUNG,T.S.HWANG,Y.Y.CHANG,H.R.LUO,S.P.WU,C.H.HSU JRNL TITL CRYSTAL STRUCTURES AND MOLECULAR DYNAMICS SIMULATIONS OF JRNL TITL 2 THERMOPHILIC MALATE DEHYDROGENASE REVEAL CRITICAL LOOP JRNL TITL 3 MOTION FOR CO-SUBSTRATE BINDING. JRNL REF PLOS ONE V. 8 83091 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 24386145 JRNL DOI 10.1371/JOURNAL.PONE.0083091 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 67995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.940 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.8631 - 4.3284 0.99 4972 150 0.1510 0.1686 REMARK 3 2 4.3284 - 3.4376 1.00 4785 146 0.1268 0.1508 REMARK 3 3 3.4376 - 3.0037 1.00 4762 144 0.1430 0.1341 REMARK 3 4 3.0037 - 2.7293 1.00 4736 144 0.1473 0.1747 REMARK 3 5 2.7293 - 2.5338 1.00 4703 142 0.1464 0.1699 REMARK 3 6 2.5338 - 2.3845 1.00 4712 143 0.1446 0.1787 REMARK 3 7 2.3845 - 2.2652 1.00 4693 142 0.1426 0.1754 REMARK 3 8 2.2652 - 2.1666 1.00 4683 142 0.1422 0.1746 REMARK 3 9 2.1666 - 2.0832 1.00 4669 142 0.1380 0.1754 REMARK 3 10 2.0832 - 2.0113 1.00 4692 142 0.1454 0.1895 REMARK 3 11 2.0113 - 1.9485 1.00 4656 141 0.1490 0.1771 REMARK 3 12 1.9485 - 1.8928 1.00 4663 141 0.1484 0.2147 REMARK 3 13 1.8928 - 1.8430 1.00 4658 142 0.1584 0.2264 REMARK 3 14 1.8430 - 1.7980 0.99 4611 139 0.1681 0.1862 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5117 REMARK 3 ANGLE : 1.050 6925 REMARK 3 CHIRALITY : 0.071 783 REMARK 3 PLANARITY : 0.005 907 REMARK 3 DIHEDRAL : 13.127 1913 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.4892 35.1260 14.8794 REMARK 3 T TENSOR REMARK 3 T11: 0.0741 T22: 0.0454 REMARK 3 T33: 0.0722 T12: 0.0037 REMARK 3 T13: 0.0057 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 1.9847 L22: 1.3894 REMARK 3 L33: 1.0635 L12: 0.1690 REMARK 3 L13: 0.2855 L23: 0.2521 REMARK 3 S TENSOR REMARK 3 S11: 0.0236 S12: -0.0058 S13: 0.1757 REMARK 3 S21: 0.0047 S22: -0.0230 S23: 0.0296 REMARK 3 S31: -0.0466 S32: -0.0307 S33: -0.0109 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 87 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.5800 27.9275 20.7414 REMARK 3 T TENSOR REMARK 3 T11: 0.1661 T22: 0.2018 REMARK 3 T33: 0.1987 T12: 0.0164 REMARK 3 T13: 0.0405 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 3.3624 L22: 2.0748 REMARK 3 L33: 2.4875 L12: 0.5506 REMARK 3 L13: -0.4451 L23: 0.1686 REMARK 3 S TENSOR REMARK 3 S11: 0.0438 S12: -0.5206 S13: -0.1026 REMARK 3 S21: 0.5154 S22: 0.0022 S23: 0.4365 REMARK 3 S31: -0.0311 S32: -0.3358 S33: 0.0307 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 120 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1923 13.6314 8.7643 REMARK 3 T TENSOR REMARK 3 T11: 0.0803 T22: 0.0900 REMARK 3 T33: 0.0527 T12: -0.0025 REMARK 3 T13: -0.0051 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 0.9392 L22: 1.8918 REMARK 3 L33: 0.7760 L12: -0.4334 REMARK 3 L13: 0.0568 L23: 0.0247 REMARK 3 S TENSOR REMARK 3 S11: 0.0403 S12: 0.0885 S13: -0.0516 REMARK 3 S21: -0.0936 S22: -0.0542 S23: 0.0307 REMARK 3 S31: 0.0738 S32: -0.0219 S33: 0.0317 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 205 THROUGH 254 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4998 8.5202 16.0501 REMARK 3 T TENSOR REMARK 3 T11: 0.0686 T22: 0.0577 REMARK 3 T33: 0.0778 T12: 0.0159 REMARK 3 T13: 0.0022 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.6423 L22: 1.2268 REMARK 3 L33: 1.1236 L12: 0.2701 REMARK 3 L13: 0.2073 L23: -0.2064 REMARK 3 S TENSOR REMARK 3 S11: 0.0511 S12: -0.0279 S13: -0.0918 REMARK 3 S21: 0.0446 S22: -0.0392 S23: -0.0105 REMARK 3 S31: 0.1492 S32: 0.0453 S33: -0.0134 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 255 THROUGH 300 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6650 12.6964 0.3048 REMARK 3 T TENSOR REMARK 3 T11: 0.1198 T22: 0.0695 REMARK 3 T33: 0.0523 T12: 0.0038 REMARK 3 T13: -0.0148 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.8367 L22: 1.7838 REMARK 3 L33: 1.1781 L12: 0.1981 REMARK 3 L13: 0.3421 L23: 0.1225 REMARK 3 S TENSOR REMARK 3 S11: -0.0467 S12: 0.1760 S13: 0.0359 REMARK 3 S21: -0.2741 S22: 0.0536 S23: 0.0458 REMARK 3 S31: 0.0735 S32: -0.0070 S33: 0.0041 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 301 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.0589 11.8785 11.2311 REMARK 3 T TENSOR REMARK 3 T11: 0.1060 T22: 0.1646 REMARK 3 T33: 0.1553 T12: -0.0427 REMARK 3 T13: -0.0158 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 2.3903 L22: 3.7270 REMARK 3 L33: 1.2113 L12: -1.7059 REMARK 3 L13: -0.1430 L23: 0.1815 REMARK 3 S TENSOR REMARK 3 S11: -0.0294 S12: -0.0937 S13: -0.0891 REMARK 3 S21: 0.1220 S22: -0.0203 S23: 0.5060 REMARK 3 S31: 0.0522 S32: -0.1784 S33: -0.0211 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2447 14.8739 22.8585 REMARK 3 T TENSOR REMARK 3 T11: 0.0861 T22: 0.0666 REMARK 3 T33: 0.0738 T12: 0.0316 REMARK 3 T13: -0.0152 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 2.0753 L22: 1.7327 REMARK 3 L33: 1.4943 L12: 0.4244 REMARK 3 L13: 0.2633 L23: 0.1897 REMARK 3 S TENSOR REMARK 3 S11: 0.0466 S12: -0.0525 S13: -0.0633 REMARK 3 S21: 0.0460 S22: 0.0258 S23: -0.0761 REMARK 3 S31: 0.1622 S32: 0.1220 S33: -0.0429 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 87 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2822 22.0139 41.5614 REMARK 3 T TENSOR REMARK 3 T11: 0.3967 T22: 0.2791 REMARK 3 T33: 0.1601 T12: 0.0813 REMARK 3 T13: -0.0409 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 5.2214 L22: 4.0339 REMARK 3 L33: 6.6060 L12: 0.4652 REMARK 3 L13: -0.8762 L23: 1.5198 REMARK 3 S TENSOR REMARK 3 S11: -0.1032 S12: -0.8120 S13: 0.1650 REMARK 3 S21: 1.2288 S22: 0.2075 S23: 0.1737 REMARK 3 S31: -0.0538 S32: 0.0242 S33: -0.0328 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 120 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.6994 24.2130 29.9644 REMARK 3 T TENSOR REMARK 3 T11: 0.1013 T22: 0.2071 REMARK 3 T33: 0.1651 T12: 0.0191 REMARK 3 T13: -0.0414 T23: -0.0267 REMARK 3 L TENSOR REMARK 3 L11: 3.1812 L22: 3.0963 REMARK 3 L33: 2.4223 L12: -0.6262 REMARK 3 L13: 1.2634 L23: -0.3580 REMARK 3 S TENSOR REMARK 3 S11: -0.0574 S12: -0.1924 S13: -0.0250 REMARK 3 S21: 0.2596 S22: 0.1325 S23: -0.4635 REMARK 3 S31: 0.0867 S32: 0.4080 S33: 0.0015 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 157 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8424 43.6891 18.7390 REMARK 3 T TENSOR REMARK 3 T11: 0.1059 T22: 0.0921 REMARK 3 T33: 0.0747 T12: -0.0428 REMARK 3 T13: 0.0326 T23: -0.0423 REMARK 3 L TENSOR REMARK 3 L11: 4.7381 L22: 4.4085 REMARK 3 L33: 1.5097 L12: -1.0154 REMARK 3 L13: 0.4986 L23: -1.2505 REMARK 3 S TENSOR REMARK 3 S11: 0.0163 S12: 0.1472 S13: 0.0883 REMARK 3 S21: -0.2074 S22: 0.1387 S23: 0.1201 REMARK 3 S31: -0.2126 S32: 0.1403 S33: -0.1089 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 185 THROUGH 267 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4011 41.9560 23.4039 REMARK 3 T TENSOR REMARK 3 T11: 0.1117 T22: 0.1093 REMARK 3 T33: 0.0947 T12: -0.0308 REMARK 3 T13: 0.0144 T23: -0.0240 REMARK 3 L TENSOR REMARK 3 L11: 1.1792 L22: 1.1225 REMARK 3 L33: 0.7725 L12: -0.0033 REMARK 3 L13: -0.2112 L23: 0.6223 REMARK 3 S TENSOR REMARK 3 S11: 0.0343 S12: -0.0508 S13: 0.1493 REMARK 3 S21: -0.0797 S22: 0.0586 S23: -0.1254 REMARK 3 S31: -0.1405 S32: 0.1603 S33: -0.0709 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 268 THROUGH 300 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.7518 37.7025 23.8440 REMARK 3 T TENSOR REMARK 3 T11: 0.0740 T22: 0.2362 REMARK 3 T33: 0.2454 T12: -0.0198 REMARK 3 T13: 0.0067 T23: -0.0934 REMARK 3 L TENSOR REMARK 3 L11: 2.2530 L22: 2.5999 REMARK 3 L33: 1.9966 L12: 1.8896 REMARK 3 L13: 0.7562 L23: 1.1009 REMARK 3 S TENSOR REMARK 3 S11: 0.1125 S12: -0.0576 S13: -0.0573 REMARK 3 S21: -0.0642 S22: 0.2605 S23: -0.5319 REMARK 3 S31: -0.0616 S32: 0.4608 S33: -0.2287 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 301 THROUGH 329 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.0344 38.3849 39.2956 REMARK 3 T TENSOR REMARK 3 T11: 0.2245 T22: 0.3648 REMARK 3 T33: 0.2645 T12: -0.0107 REMARK 3 T13: -0.0923 T23: -0.1293 REMARK 3 L TENSOR REMARK 3 L11: 1.9397 L22: 5.3995 REMARK 3 L33: 2.8745 L12: -1.0685 REMARK 3 L13: 0.7849 L23: -2.3344 REMARK 3 S TENSOR REMARK 3 S11: 0.0168 S12: -0.3563 S13: -0.0441 REMARK 3 S21: 0.6985 S22: 0.1537 S23: -0.5378 REMARK 3 S31: -0.0578 S32: 0.3253 S33: -0.1244 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KDE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079197. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67995 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.798 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : 0.06100 REMARK 200 FOR THE DATA SET : 27.7130 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.30100 REMARK 200 R SYM FOR SHELL (I) : 0.30100 REMARK 200 FOR SHELL : 6.110 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22.5% PEG 4000, 1.0M TRIS-HCL, 0.2M REMARK 280 MGCL2, PH 8.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.58650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.05850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.00300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.05850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.58650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.00300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 332 REMARK 465 ALA A 333 REMARK 465 LEU A 334 REMARK 465 GLU A 335 REMARK 465 HIS A 336 REMARK 465 HIS A 337 REMARK 465 HIS A 338 REMARK 465 HIS A 339 REMARK 465 HIS A 340 REMARK 465 HIS A 341 REMARK 465 LEU B 330 REMARK 465 ALA B 331 REMARK 465 ALA B 332 REMARK 465 ALA B 333 REMARK 465 LEU B 334 REMARK 465 GLU B 335 REMARK 465 HIS B 336 REMARK 465 HIS B 337 REMARK 465 HIS B 338 REMARK 465 HIS B 339 REMARK 465 HIS B 340 REMARK 465 HIS B 341 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 804 O HOH A 809 1.88 REMARK 500 OE1 GLU B 308 O HOH B 731 1.90 REMARK 500 O HOH A 808 O HOH A 812 1.94 REMARK 500 N GLY A 146 O HOH A 791 1.94 REMARK 500 OD2 ASP A 288 O HOH A 794 1.97 REMARK 500 O HOH B 755 O HOH B 780 1.98 REMARK 500 O HOH B 756 O HOH B 763 2.03 REMARK 500 ND2 ASN B 131 O HOH B 736 2.04 REMARK 500 O HOH A 823 O HOH B 775 2.06 REMARK 500 OD1 ASP A 176 O HOH A 795 2.12 REMARK 500 NE ARG B 6 O HOH B 742 2.14 REMARK 500 O SER A 19 O HOH A 784 2.15 REMARK 500 O HOH B 753 O HOH B 760 2.16 REMARK 500 O HOH B 766 O HOH B 780 2.17 REMARK 500 O HOH A 802 O HOH A 818 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 272 19.40 59.07 REMARK 500 ALA B 144 69.31 -117.35 REMARK 500 LEU B 254 -79.13 -94.76 REMARK 500 REMARK 500 REMARK: NULL DBREF 4KDE A 1 327 UNP P10584 MDH_THETH 1 327 DBREF 4KDE B 1 327 UNP P10584 MDH_THETH 1 327 SEQADV 4KDE ARG A 328 UNP P10584 EXPRESSION TAG SEQADV 4KDE LYS A 329 UNP P10584 EXPRESSION TAG SEQADV 4KDE LEU A 330 UNP P10584 EXPRESSION TAG SEQADV 4KDE ALA A 331 UNP P10584 EXPRESSION TAG SEQADV 4KDE ALA A 332 UNP P10584 EXPRESSION TAG SEQADV 4KDE ALA A 333 UNP P10584 EXPRESSION TAG SEQADV 4KDE LEU A 334 UNP P10584 EXPRESSION TAG SEQADV 4KDE GLU A 335 UNP P10584 EXPRESSION TAG SEQADV 4KDE HIS A 336 UNP P10584 EXPRESSION TAG SEQADV 4KDE HIS A 337 UNP P10584 EXPRESSION TAG SEQADV 4KDE HIS A 338 UNP P10584 EXPRESSION TAG SEQADV 4KDE HIS A 339 UNP P10584 EXPRESSION TAG SEQADV 4KDE HIS A 340 UNP P10584 EXPRESSION TAG SEQADV 4KDE HIS A 341 UNP P10584 EXPRESSION TAG SEQADV 4KDE ARG B 328 UNP P10584 EXPRESSION TAG SEQADV 4KDE LYS B 329 UNP P10584 EXPRESSION TAG SEQADV 4KDE LEU B 330 UNP P10584 EXPRESSION TAG SEQADV 4KDE ALA B 331 UNP P10584 EXPRESSION TAG SEQADV 4KDE ALA B 332 UNP P10584 EXPRESSION TAG SEQADV 4KDE ALA B 333 UNP P10584 EXPRESSION TAG SEQADV 4KDE LEU B 334 UNP P10584 EXPRESSION TAG SEQADV 4KDE GLU B 335 UNP P10584 EXPRESSION TAG SEQADV 4KDE HIS B 336 UNP P10584 EXPRESSION TAG SEQADV 4KDE HIS B 337 UNP P10584 EXPRESSION TAG SEQADV 4KDE HIS B 338 UNP P10584 EXPRESSION TAG SEQADV 4KDE HIS B 339 UNP P10584 EXPRESSION TAG SEQADV 4KDE HIS B 340 UNP P10584 EXPRESSION TAG SEQADV 4KDE HIS B 341 UNP P10584 EXPRESSION TAG SEQRES 1 A 341 MET LYS ALA PRO VAL ARG VAL ALA VAL THR GLY ALA ALA SEQRES 2 A 341 GLY GLN ILE GLY TYR SER LEU LEU PHE ARG ILE ALA ALA SEQRES 3 A 341 GLY GLU MET LEU GLY LYS ASP GLN PRO VAL ILE LEU GLN SEQRES 4 A 341 LEU LEU GLU ILE PRO GLN ALA MET LYS ALA LEU GLU GLY SEQRES 5 A 341 VAL VAL MET GLU LEU GLU ASP CYS ALA PHE PRO LEU LEU SEQRES 6 A 341 ALA GLY LEU GLU ALA THR ASP ASP PRO LYS VAL ALA PHE SEQRES 7 A 341 LYS ASP ALA ASP TYR ALA LEU LEU VAL GLY ALA ALA PRO SEQRES 8 A 341 ARG LYS ALA GLY MET GLU ARG ARG ASP LEU LEU GLN VAL SEQRES 9 A 341 ASN GLY LYS ILE PHE THR GLU GLN GLY ARG ALA LEU ALA SEQRES 10 A 341 GLU VAL ALA LYS LYS ASP VAL LYS VAL LEU VAL VAL GLY SEQRES 11 A 341 ASN PRO ALA ASN THR ASN ALA LEU ILE ALA TYR LYS ASN SEQRES 12 A 341 ALA PRO GLY LEU ASN PRO ARG ASN PHE THR ALA MET THR SEQRES 13 A 341 ARG LEU ASP HIS ASN ARG ALA LYS ALA GLN LEU ALA LYS SEQRES 14 A 341 LYS THR GLY THR GLY VAL ASP ARG ILE ARG ARG MET THR SEQRES 15 A 341 VAL TRP GLY ASN HIS SER SER THR MET PHE PRO ASP LEU SEQRES 16 A 341 PHE HIS ALA GLU VAL ASP GLY ARG PRO ALA LEU GLU LEU SEQRES 17 A 341 VAL ASP MET GLU TRP TYR GLU LYS VAL PHE ILE PRO THR SEQRES 18 A 341 VAL ALA GLN ARG GLY ALA ALA ILE ILE GLN ALA ARG GLY SEQRES 19 A 341 ALA SER SER ALA ALA SER ALA ALA ASN ALA ALA ILE GLU SEQRES 20 A 341 HIS ILE ARG ASP TRP ALA LEU GLY THR PRO GLU GLY ASP SEQRES 21 A 341 TRP VAL SER MET ALA VAL PRO SER GLN GLY GLU TYR GLY SEQRES 22 A 341 ILE PRO GLU GLY ILE VAL TYR SER PHE PRO VAL THR ALA SEQRES 23 A 341 LYS ASP GLY ALA TYR ARG VAL VAL GLU GLY LEU GLU ILE SEQRES 24 A 341 ASN GLU PHE ALA ARG LYS ARG MET GLU ILE THR ALA GLN SEQRES 25 A 341 GLU LEU LEU ASP GLU MET GLU GLN VAL LYS ALA LEU GLY SEQRES 26 A 341 LEU ILE ARG LYS LEU ALA ALA ALA LEU GLU HIS HIS HIS SEQRES 27 A 341 HIS HIS HIS SEQRES 1 B 341 MET LYS ALA PRO VAL ARG VAL ALA VAL THR GLY ALA ALA SEQRES 2 B 341 GLY GLN ILE GLY TYR SER LEU LEU PHE ARG ILE ALA ALA SEQRES 3 B 341 GLY GLU MET LEU GLY LYS ASP GLN PRO VAL ILE LEU GLN SEQRES 4 B 341 LEU LEU GLU ILE PRO GLN ALA MET LYS ALA LEU GLU GLY SEQRES 5 B 341 VAL VAL MET GLU LEU GLU ASP CYS ALA PHE PRO LEU LEU SEQRES 6 B 341 ALA GLY LEU GLU ALA THR ASP ASP PRO LYS VAL ALA PHE SEQRES 7 B 341 LYS ASP ALA ASP TYR ALA LEU LEU VAL GLY ALA ALA PRO SEQRES 8 B 341 ARG LYS ALA GLY MET GLU ARG ARG ASP LEU LEU GLN VAL SEQRES 9 B 341 ASN GLY LYS ILE PHE THR GLU GLN GLY ARG ALA LEU ALA SEQRES 10 B 341 GLU VAL ALA LYS LYS ASP VAL LYS VAL LEU VAL VAL GLY SEQRES 11 B 341 ASN PRO ALA ASN THR ASN ALA LEU ILE ALA TYR LYS ASN SEQRES 12 B 341 ALA PRO GLY LEU ASN PRO ARG ASN PHE THR ALA MET THR SEQRES 13 B 341 ARG LEU ASP HIS ASN ARG ALA LYS ALA GLN LEU ALA LYS SEQRES 14 B 341 LYS THR GLY THR GLY VAL ASP ARG ILE ARG ARG MET THR SEQRES 15 B 341 VAL TRP GLY ASN HIS SER SER THR MET PHE PRO ASP LEU SEQRES 16 B 341 PHE HIS ALA GLU VAL ASP GLY ARG PRO ALA LEU GLU LEU SEQRES 17 B 341 VAL ASP MET GLU TRP TYR GLU LYS VAL PHE ILE PRO THR SEQRES 18 B 341 VAL ALA GLN ARG GLY ALA ALA ILE ILE GLN ALA ARG GLY SEQRES 19 B 341 ALA SER SER ALA ALA SER ALA ALA ASN ALA ALA ILE GLU SEQRES 20 B 341 HIS ILE ARG ASP TRP ALA LEU GLY THR PRO GLU GLY ASP SEQRES 21 B 341 TRP VAL SER MET ALA VAL PRO SER GLN GLY GLU TYR GLY SEQRES 22 B 341 ILE PRO GLU GLY ILE VAL TYR SER PHE PRO VAL THR ALA SEQRES 23 B 341 LYS ASP GLY ALA TYR ARG VAL VAL GLU GLY LEU GLU ILE SEQRES 24 B 341 ASN GLU PHE ALA ARG LYS ARG MET GLU ILE THR ALA GLN SEQRES 25 B 341 GLU LEU LEU ASP GLU MET GLU GLN VAL LYS ALA LEU GLY SEQRES 26 B 341 LEU ILE ARG LYS LEU ALA ALA ALA LEU GLU HIS HIS HIS SEQRES 27 B 341 HIS HIS HIS FORMUL 3 HOH *846(H2 O) HELIX 1 1 GLY A 14 ALA A 26 1 13 HELIX 2 2 ILE A 43 GLN A 45 5 3 HELIX 3 3 ALA A 46 ASP A 59 1 14 HELIX 4 4 ASP A 73 PHE A 78 1 6 HELIX 5 5 GLU A 97 ALA A 120 1 24 HELIX 6 6 PRO A 132 ASN A 143 1 12 HELIX 7 7 ASN A 148 ARG A 150 5 3 HELIX 8 8 THR A 156 GLY A 172 1 17 HELIX 9 9 GLY A 174 ASP A 176 5 3 HELIX 10 10 LEU A 206 LEU A 208 5 3 HELIX 11 11 ASP A 210 VAL A 217 1 8 HELIX 12 12 VAL A 217 GLY A 234 1 18 HELIX 13 13 SER A 237 GLY A 255 1 19 HELIX 14 14 GLY A 270 ILE A 274 5 5 HELIX 15 15 ASN A 300 LEU A 324 1 25 HELIX 16 16 GLY B 14 ALA B 26 1 13 HELIX 17 17 ILE B 43 GLN B 45 5 3 HELIX 18 18 ALA B 46 ASP B 59 1 14 HELIX 19 19 ASP B 73 PHE B 78 1 6 HELIX 20 20 GLU B 97 ALA B 120 1 24 HELIX 21 21 PRO B 132 ASN B 143 1 12 HELIX 22 22 ASN B 148 ARG B 150 5 3 HELIX 23 23 THR B 156 GLY B 172 1 17 HELIX 24 24 GLY B 174 ASP B 176 5 3 HELIX 25 25 LEU B 206 LEU B 208 5 3 HELIX 26 26 ASP B 210 VAL B 217 1 8 HELIX 27 27 VAL B 217 GLY B 234 1 18 HELIX 28 28 SER B 237 LEU B 254 1 18 HELIX 29 29 GLY B 270 ILE B 274 5 5 HELIX 30 30 ASN B 300 LEU B 324 1 25 SHEET 1 A 6 LEU A 65 THR A 71 0 SHEET 2 A 6 VAL A 36 LEU A 41 1 N LEU A 40 O GLU A 69 SHEET 3 A 6 VAL A 5 VAL A 9 1 N VAL A 7 O ILE A 37 SHEET 4 A 6 TYR A 83 LEU A 86 1 O LEU A 85 N ALA A 8 SHEET 5 A 6 LYS A 125 VAL A 128 1 O LEU A 127 N LEU A 86 SHEET 6 A 6 PHE A 152 ALA A 154 1 O THR A 153 N VAL A 128 SHEET 1 B 3 ILE A 178 ARG A 179 0 SHEET 2 B 3 GLU A 199 VAL A 200 -1 O GLU A 199 N ARG A 179 SHEET 3 B 3 ARG A 203 PRO A 204 -1 O ARG A 203 N VAL A 200 SHEET 1 C 2 THR A 182 TRP A 184 0 SHEET 2 C 2 PHE A 192 ASP A 194 -1 O ASP A 194 N THR A 182 SHEET 1 D 3 VAL A 262 PRO A 267 0 SHEET 2 D 3 VAL A 279 LYS A 287 -1 O VAL A 284 N VAL A 262 SHEET 3 D 3 ALA A 290 VAL A 293 -1 O ALA A 290 N LYS A 287 SHEET 1 E 6 LEU B 65 THR B 71 0 SHEET 2 E 6 VAL B 36 LEU B 41 1 N LEU B 40 O GLU B 69 SHEET 3 E 6 VAL B 5 VAL B 9 1 N VAL B 7 O ILE B 37 SHEET 4 E 6 TYR B 83 LEU B 86 1 O TYR B 83 N ALA B 8 SHEET 5 E 6 LYS B 125 VAL B 128 1 O LEU B 127 N LEU B 86 SHEET 6 E 6 PHE B 152 ALA B 154 1 O THR B 153 N VAL B 128 SHEET 1 F 3 ILE B 178 ARG B 179 0 SHEET 2 F 3 GLU B 199 VAL B 200 -1 O GLU B 199 N ARG B 179 SHEET 3 F 3 ARG B 203 PRO B 204 -1 O ARG B 203 N VAL B 200 SHEET 1 G 2 THR B 182 TRP B 184 0 SHEET 2 G 2 PHE B 192 ASP B 194 -1 O ASP B 194 N THR B 182 SHEET 1 H 3 VAL B 262 PRO B 267 0 SHEET 2 H 3 VAL B 279 LYS B 287 -1 O VAL B 284 N VAL B 262 SHEET 3 H 3 ALA B 290 VAL B 293 -1 O ALA B 290 N LYS B 287 CISPEP 1 ASN A 131 PRO A 132 0 -6.61 CISPEP 2 ASN B 131 PRO B 132 0 -7.84 CRYST1 71.173 86.006 118.117 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014050 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011627 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008466 0.00000