HEADER SIGNALING PROTEIN/HYDROLASE 25-APR-13 4KDI TITLE CRYSTAL STRUCTURE OF P97/VCP N IN COMPLEX WITH OTU1 UBXL COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N DOMAIN (RESIDUES 21-185); COMPND 5 SYNONYM: TER ATPASE, 15S MG(2+)-ATPASE P97 SUBUNIT, VALOSIN- COMPND 6 CONTAINING PROTEIN, VCP; COMPND 7 EC: 3.6.4.6; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: UBIQUITIN THIOESTERASE OTU1; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: UBX-LIKE DOMAIN (RESIDUES 1-73); COMPND 13 SYNONYM: OTU DOMAIN-CONTAINING PROTEIN 1; COMPND 14 EC: 3.4.19.12; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VCP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 559292; SOURCE 15 STRAIN: ATCC 204508 / S288C; SOURCE 16 GENE: OTU1, YFL044C; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 19 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3); SOURCE 20 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 21 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS AAA ATPASE, PROTEIN-PROTEIN COMPLEX, UBX-LIKE DOMAIN, PROTEIN KEYWDS 2 BINDING, BETA-BARREL, BETA-GRASP, SIGNALING PROTEIN-HYDROLASE KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.J.KIM,E.E.KIM REVDAT 3 28-FEB-24 4KDI 1 SEQADV REVDAT 2 21-MAY-14 4KDI 1 JRNL REVDAT 1 19-MAR-14 4KDI 0 JRNL AUTH S.J.KIM,J.CHO,E.J.SONG,S.J.KIM,H.M.KIM,K.E.LEE,S.W.SUH, JRNL AUTH 2 E.E.KIM JRNL TITL STRUCTURAL BASIS FOR OVARIAN TUMOR DOMAIN-CONTAINING PROTEIN JRNL TITL 2 1 (OTU1) BINDING TO P97/VALOSIN-CONTAINING PROTEIN (VCP). JRNL REF J.BIOL.CHEM. V. 289 12264 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24610782 JRNL DOI 10.1074/JBC.M113.523936 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 42901 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2284 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2885 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.4010 REMARK 3 BIN FREE R VALUE SET COUNT : 145 REMARK 3 BIN FREE R VALUE : 0.4130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3665 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 198 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.12000 REMARK 3 B22 (A**2) : 1.19000 REMARK 3 B33 (A**2) : -2.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.154 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.132 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.375 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3713 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5014 ; 1.926 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 457 ; 6.826 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 174 ;37.536 ;24.368 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 701 ;17.512 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;16.182 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 586 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2750 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2303 ; 1.350 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3763 ; 2.313 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1410 ; 3.316 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1251 ; 5.469 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 185 REMARK 3 ORIGIN FOR THE GROUP (A): 20.1575 44.8397 37.0083 REMARK 3 T TENSOR REMARK 3 T11: 0.1437 T22: 0.1310 REMARK 3 T33: 0.1465 T12: -0.0101 REMARK 3 T13: 0.0301 T23: 0.0622 REMARK 3 L TENSOR REMARK 3 L11: 0.6516 L22: 0.7117 REMARK 3 L33: 1.1473 L12: -0.5289 REMARK 3 L13: 0.7334 L23: -0.3690 REMARK 3 S TENSOR REMARK 3 S11: -0.0451 S12: 0.0036 S13: 0.0116 REMARK 3 S21: -0.0988 S22: -0.0254 S23: -0.0821 REMARK 3 S31: -0.1141 S32: 0.0053 S33: 0.0705 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 22 B 187 REMARK 3 ORIGIN FOR THE GROUP (A): 1.7866 50.1517 5.0373 REMARK 3 T TENSOR REMARK 3 T11: 0.2306 T22: 0.1872 REMARK 3 T33: 0.1326 T12: 0.1375 REMARK 3 T13: -0.0330 T23: -0.0324 REMARK 3 L TENSOR REMARK 3 L11: 0.3215 L22: 0.0839 REMARK 3 L33: 2.9089 L12: -0.1514 REMARK 3 L13: 0.0715 L23: 0.0149 REMARK 3 S TENSOR REMARK 3 S11: 0.1688 S12: -0.0031 S13: -0.0633 REMARK 3 S21: -0.0635 S22: -0.0004 S23: 0.0621 REMARK 3 S31: 0.4234 S32: 0.3273 S33: -0.1684 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 73 REMARK 3 ORIGIN FOR THE GROUP (A): 17.4844 66.0749 47.9888 REMARK 3 T TENSOR REMARK 3 T11: 0.4182 T22: 0.0535 REMARK 3 T33: 0.1006 T12: 0.0712 REMARK 3 T13: -0.1560 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 2.2332 L22: 3.1767 REMARK 3 L33: 1.6890 L12: -2.0531 REMARK 3 L13: 1.4644 L23: -2.3152 REMARK 3 S TENSOR REMARK 3 S11: -0.5379 S12: -0.3014 S13: 0.1452 REMARK 3 S21: 0.6604 S22: 0.2545 S23: -0.3675 REMARK 3 S31: -0.4699 S32: -0.1734 S33: 0.2833 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D -1 D 73 REMARK 3 ORIGIN FOR THE GROUP (A): -0.9864 65.6016 -14.9418 REMARK 3 T TENSOR REMARK 3 T11: 0.1050 T22: 0.2105 REMARK 3 T33: 0.1074 T12: 0.0350 REMARK 3 T13: -0.0305 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 0.5139 L22: 1.7742 REMARK 3 L33: 0.3891 L12: 0.1120 REMARK 3 L13: -0.0823 L23: 0.7500 REMARK 3 S TENSOR REMARK 3 S11: -0.0497 S12: 0.0728 S13: 0.0546 REMARK 3 S21: 0.0648 S22: -0.0151 S23: 0.1904 REMARK 3 S31: 0.0257 S32: 0.0536 S33: 0.0648 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4KDI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079201. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97951 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46883 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : 0.08900 REMARK 200 FOR THE DATA SET : 25.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.38500 REMARK 200 R SYM FOR SHELL (I) : 0.38500 REMARK 200 FOR SHELL : 2.631 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 2000, 10% TACSIMATE, PH 5.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.40950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.76750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.30450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.76750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.40950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.30450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 465 HIS A 6 REMARK 465 MET A 7 REMARK 465 ALA A 8 REMARK 465 SER A 9 REMARK 465 MET A 10 REMARK 465 THR A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 GLN A 14 REMARK 465 GLN A 15 REMARK 465 MET A 16 REMARK 465 GLY A 17 REMARK 465 ARG A 18 REMARK 465 GLY A 19 REMARK 465 SER A 20 REMARK 465 ASP A 121 REMARK 465 THR A 122 REMARK 465 VAL A 123 REMARK 465 GLU A 124 REMARK 465 GLY A 125 REMARK 465 ILE A 126 REMARK 465 THR A 127 REMARK 465 GLY A 128 REMARK 465 GLY A 186 REMARK 465 GLU A 187 REMARK 465 PRO A 188 REMARK 465 ILE A 189 REMARK 465 LYS A 190 REMARK 465 ARG A 191 REMARK 465 GLU A 192 REMARK 465 ASP A 193 REMARK 465 GLU A 194 REMARK 465 GLU A 195 REMARK 465 GLU A 196 REMARK 465 GLY B 4 REMARK 465 SER B 5 REMARK 465 HIS B 6 REMARK 465 MET B 7 REMARK 465 ALA B 8 REMARK 465 SER B 9 REMARK 465 MET B 10 REMARK 465 THR B 11 REMARK 465 GLY B 12 REMARK 465 GLY B 13 REMARK 465 GLN B 14 REMARK 465 GLN B 15 REMARK 465 MET B 16 REMARK 465 GLY B 17 REMARK 465 ARG B 18 REMARK 465 GLY B 19 REMARK 465 SER B 20 REMARK 465 ASN B 21 REMARK 465 PRO B 188 REMARK 465 ILE B 189 REMARK 465 LYS B 190 REMARK 465 ARG B 191 REMARK 465 GLU B 192 REMARK 465 ASP B 193 REMARK 465 GLU B 194 REMARK 465 GLU B 195 REMARK 465 GLU B 196 REMARK 465 GLY C -16 REMARK 465 SER C -15 REMARK 465 HIS C -14 REMARK 465 MET C -13 REMARK 465 ALA C -12 REMARK 465 SER C -11 REMARK 465 MET C -10 REMARK 465 THR C -9 REMARK 465 GLY C -8 REMARK 465 GLY C -7 REMARK 465 GLN C -6 REMARK 465 GLN C -5 REMARK 465 MET C -4 REMARK 465 GLY C -3 REMARK 465 ARG C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 GLY C 49 REMARK 465 GLU C 50 REMARK 465 ASP C 51 REMARK 465 ALA C 52 REMARK 465 SER C 53 REMARK 465 LEU C 54 REMARK 465 GLY C 55 REMARK 465 GLY D -16 REMARK 465 SER D -15 REMARK 465 HIS D -14 REMARK 465 MET D -13 REMARK 465 ALA D -12 REMARK 465 SER D -11 REMARK 465 MET D -10 REMARK 465 THR D -9 REMARK 465 GLY D -8 REMARK 465 GLY D -7 REMARK 465 GLN D -6 REMARK 465 GLN D -5 REMARK 465 MET D -4 REMARK 465 GLY D -3 REMARK 465 ARG D -2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 64 -0.15 82.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 62 LYS A 63 141.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KDL RELATED DB: PDB DBREF 4KDI A 21 196 UNP P55072 TERA_HUMAN 21 196 DBREF 4KDI B 21 196 UNP P55072 TERA_HUMAN 21 196 DBREF 4KDI C 1 73 UNP P43558 OTU1_YEAST 1 73 DBREF 4KDI D 1 73 UNP P43558 OTU1_YEAST 1 73 SEQADV 4KDI GLY A 4 UNP P55072 EXPRESSION TAG SEQADV 4KDI SER A 5 UNP P55072 EXPRESSION TAG SEQADV 4KDI HIS A 6 UNP P55072 EXPRESSION TAG SEQADV 4KDI MET A 7 UNP P55072 EXPRESSION TAG SEQADV 4KDI ALA A 8 UNP P55072 EXPRESSION TAG SEQADV 4KDI SER A 9 UNP P55072 EXPRESSION TAG SEQADV 4KDI MET A 10 UNP P55072 EXPRESSION TAG SEQADV 4KDI THR A 11 UNP P55072 EXPRESSION TAG SEQADV 4KDI GLY A 12 UNP P55072 EXPRESSION TAG SEQADV 4KDI GLY A 13 UNP P55072 EXPRESSION TAG SEQADV 4KDI GLN A 14 UNP P55072 EXPRESSION TAG SEQADV 4KDI GLN A 15 UNP P55072 EXPRESSION TAG SEQADV 4KDI MET A 16 UNP P55072 EXPRESSION TAG SEQADV 4KDI GLY A 17 UNP P55072 EXPRESSION TAG SEQADV 4KDI ARG A 18 UNP P55072 EXPRESSION TAG SEQADV 4KDI GLY A 19 UNP P55072 EXPRESSION TAG SEQADV 4KDI SER A 20 UNP P55072 EXPRESSION TAG SEQADV 4KDI GLY B 4 UNP P55072 EXPRESSION TAG SEQADV 4KDI SER B 5 UNP P55072 EXPRESSION TAG SEQADV 4KDI HIS B 6 UNP P55072 EXPRESSION TAG SEQADV 4KDI MET B 7 UNP P55072 EXPRESSION TAG SEQADV 4KDI ALA B 8 UNP P55072 EXPRESSION TAG SEQADV 4KDI SER B 9 UNP P55072 EXPRESSION TAG SEQADV 4KDI MET B 10 UNP P55072 EXPRESSION TAG SEQADV 4KDI THR B 11 UNP P55072 EXPRESSION TAG SEQADV 4KDI GLY B 12 UNP P55072 EXPRESSION TAG SEQADV 4KDI GLY B 13 UNP P55072 EXPRESSION TAG SEQADV 4KDI GLN B 14 UNP P55072 EXPRESSION TAG SEQADV 4KDI GLN B 15 UNP P55072 EXPRESSION TAG SEQADV 4KDI MET B 16 UNP P55072 EXPRESSION TAG SEQADV 4KDI GLY B 17 UNP P55072 EXPRESSION TAG SEQADV 4KDI ARG B 18 UNP P55072 EXPRESSION TAG SEQADV 4KDI GLY B 19 UNP P55072 EXPRESSION TAG SEQADV 4KDI SER B 20 UNP P55072 EXPRESSION TAG SEQADV 4KDI GLY C -16 UNP P43558 EXPRESSION TAG SEQADV 4KDI SER C -15 UNP P43558 EXPRESSION TAG SEQADV 4KDI HIS C -14 UNP P43558 EXPRESSION TAG SEQADV 4KDI MET C -13 UNP P43558 EXPRESSION TAG SEQADV 4KDI ALA C -12 UNP P43558 EXPRESSION TAG SEQADV 4KDI SER C -11 UNP P43558 EXPRESSION TAG SEQADV 4KDI MET C -10 UNP P43558 EXPRESSION TAG SEQADV 4KDI THR C -9 UNP P43558 EXPRESSION TAG SEQADV 4KDI GLY C -8 UNP P43558 EXPRESSION TAG SEQADV 4KDI GLY C -7 UNP P43558 EXPRESSION TAG SEQADV 4KDI GLN C -6 UNP P43558 EXPRESSION TAG SEQADV 4KDI GLN C -5 UNP P43558 EXPRESSION TAG SEQADV 4KDI MET C -4 UNP P43558 EXPRESSION TAG SEQADV 4KDI GLY C -3 UNP P43558 EXPRESSION TAG SEQADV 4KDI ARG C -2 UNP P43558 EXPRESSION TAG SEQADV 4KDI GLY C -1 UNP P43558 EXPRESSION TAG SEQADV 4KDI SER C 0 UNP P43558 EXPRESSION TAG SEQADV 4KDI GLY D -16 UNP P43558 EXPRESSION TAG SEQADV 4KDI SER D -15 UNP P43558 EXPRESSION TAG SEQADV 4KDI HIS D -14 UNP P43558 EXPRESSION TAG SEQADV 4KDI MET D -13 UNP P43558 EXPRESSION TAG SEQADV 4KDI ALA D -12 UNP P43558 EXPRESSION TAG SEQADV 4KDI SER D -11 UNP P43558 EXPRESSION TAG SEQADV 4KDI MET D -10 UNP P43558 EXPRESSION TAG SEQADV 4KDI THR D -9 UNP P43558 EXPRESSION TAG SEQADV 4KDI GLY D -8 UNP P43558 EXPRESSION TAG SEQADV 4KDI GLY D -7 UNP P43558 EXPRESSION TAG SEQADV 4KDI GLN D -6 UNP P43558 EXPRESSION TAG SEQADV 4KDI GLN D -5 UNP P43558 EXPRESSION TAG SEQADV 4KDI MET D -4 UNP P43558 EXPRESSION TAG SEQADV 4KDI GLY D -3 UNP P43558 EXPRESSION TAG SEQADV 4KDI ARG D -2 UNP P43558 EXPRESSION TAG SEQADV 4KDI GLY D -1 UNP P43558 EXPRESSION TAG SEQADV 4KDI SER D 0 UNP P43558 EXPRESSION TAG SEQRES 1 A 193 GLY SER HIS MET ALA SER MET THR GLY GLY GLN GLN MET SEQRES 2 A 193 GLY ARG GLY SER ASN ARG PRO ASN ARG LEU ILE VAL ASP SEQRES 3 A 193 GLU ALA ILE ASN GLU ASP ASN SER VAL VAL SER LEU SER SEQRES 4 A 193 GLN PRO LYS MET ASP GLU LEU GLN LEU PHE ARG GLY ASP SEQRES 5 A 193 THR VAL LEU LEU LYS GLY LYS LYS ARG ARG GLU ALA VAL SEQRES 6 A 193 CYS ILE VAL LEU SER ASP ASP THR CYS SER ASP GLU LYS SEQRES 7 A 193 ILE ARG MET ASN ARG VAL VAL ARG ASN ASN LEU ARG VAL SEQRES 8 A 193 ARG LEU GLY ASP VAL ILE SER ILE GLN PRO CYS PRO ASP SEQRES 9 A 193 VAL LYS TYR GLY LYS ARG ILE HIS VAL LEU PRO ILE ASP SEQRES 10 A 193 ASP THR VAL GLU GLY ILE THR GLY ASN LEU PHE GLU VAL SEQRES 11 A 193 TYR LEU LYS PRO TYR PHE LEU GLU ALA TYR ARG PRO ILE SEQRES 12 A 193 ARG LYS GLY ASP ILE PHE LEU VAL ARG GLY GLY MET ARG SEQRES 13 A 193 ALA VAL GLU PHE LYS VAL VAL GLU THR ASP PRO SER PRO SEQRES 14 A 193 TYR CYS ILE VAL ALA PRO ASP THR VAL ILE HIS CYS GLU SEQRES 15 A 193 GLY GLU PRO ILE LYS ARG GLU ASP GLU GLU GLU SEQRES 1 B 193 GLY SER HIS MET ALA SER MET THR GLY GLY GLN GLN MET SEQRES 2 B 193 GLY ARG GLY SER ASN ARG PRO ASN ARG LEU ILE VAL ASP SEQRES 3 B 193 GLU ALA ILE ASN GLU ASP ASN SER VAL VAL SER LEU SER SEQRES 4 B 193 GLN PRO LYS MET ASP GLU LEU GLN LEU PHE ARG GLY ASP SEQRES 5 B 193 THR VAL LEU LEU LYS GLY LYS LYS ARG ARG GLU ALA VAL SEQRES 6 B 193 CYS ILE VAL LEU SER ASP ASP THR CYS SER ASP GLU LYS SEQRES 7 B 193 ILE ARG MET ASN ARG VAL VAL ARG ASN ASN LEU ARG VAL SEQRES 8 B 193 ARG LEU GLY ASP VAL ILE SER ILE GLN PRO CYS PRO ASP SEQRES 9 B 193 VAL LYS TYR GLY LYS ARG ILE HIS VAL LEU PRO ILE ASP SEQRES 10 B 193 ASP THR VAL GLU GLY ILE THR GLY ASN LEU PHE GLU VAL SEQRES 11 B 193 TYR LEU LYS PRO TYR PHE LEU GLU ALA TYR ARG PRO ILE SEQRES 12 B 193 ARG LYS GLY ASP ILE PHE LEU VAL ARG GLY GLY MET ARG SEQRES 13 B 193 ALA VAL GLU PHE LYS VAL VAL GLU THR ASP PRO SER PRO SEQRES 14 B 193 TYR CYS ILE VAL ALA PRO ASP THR VAL ILE HIS CYS GLU SEQRES 15 B 193 GLY GLU PRO ILE LYS ARG GLU ASP GLU GLU GLU SEQRES 1 C 90 GLY SER HIS MET ALA SER MET THR GLY GLY GLN GLN MET SEQRES 2 C 90 GLY ARG GLY SER MET LYS LEU LYS VAL THR GLY ALA GLY SEQRES 3 C 90 ILE ASN GLN VAL VAL THR LEU LYS GLN ASP ALA THR LEU SEQRES 4 C 90 ASN ASP LEU ILE GLU HIS ILE ASN VAL ASP VAL LYS THR SEQRES 5 C 90 MET ARG PHE GLY TYR PRO PRO GLN ARG ILE ASN LEU GLN SEQRES 6 C 90 GLY GLU ASP ALA SER LEU GLY GLN THR GLN LEU ASP GLU SEQRES 7 C 90 LEU GLY ILE ASN SER GLY GLU LYS ILE THR ILE GLU SEQRES 1 D 90 GLY SER HIS MET ALA SER MET THR GLY GLY GLN GLN MET SEQRES 2 D 90 GLY ARG GLY SER MET LYS LEU LYS VAL THR GLY ALA GLY SEQRES 3 D 90 ILE ASN GLN VAL VAL THR LEU LYS GLN ASP ALA THR LEU SEQRES 4 D 90 ASN ASP LEU ILE GLU HIS ILE ASN VAL ASP VAL LYS THR SEQRES 5 D 90 MET ARG PHE GLY TYR PRO PRO GLN ARG ILE ASN LEU GLN SEQRES 6 D 90 GLY GLU ASP ALA SER LEU GLY GLN THR GLN LEU ASP GLU SEQRES 7 D 90 LEU GLY ILE ASN SER GLY GLU LYS ILE THR ILE GLU FORMUL 5 HOH *198(H2 O) HELIX 1 1 SER A 42 GLN A 50 1 9 HELIX 2 2 ASN A 85 LEU A 92 1 8 HELIX 3 3 LEU A 130 TYR A 134 1 5 HELIX 4 4 TYR A 134 LEU A 140 1 7 HELIX 5 5 SER B 42 LEU B 49 1 8 HELIX 6 6 ASN B 85 LEU B 92 1 8 HELIX 7 7 ASN B 129 TYR B 134 1 6 HELIX 8 8 TYR B 134 LEU B 140 1 7 HELIX 9 9 THR C 21 ILE C 29 1 9 HELIX 10 10 GLN C 58 GLY C 63 1 6 HELIX 11 11 THR D 21 ILE D 29 1 9 HELIX 12 12 ASP D 51 GLN D 56 1 6 HELIX 13 13 LEU D 59 GLY D 63 5 5 SHEET 1 A 7 ARG A 25 ASP A 29 0 SHEET 2 A 7 LYS A 81 ARG A 83 1 O ILE A 82 N ASP A 29 SHEET 3 A 7 VAL A 38 LEU A 41 -1 N SER A 40 O ARG A 83 SHEET 4 A 7 GLU A 66 SER A 73 1 O LEU A 72 N LEU A 41 SHEET 5 A 7 THR A 56 LYS A 60 -1 N VAL A 57 O CYS A 69 SHEET 6 A 7 VAL A 99 PRO A 104 -1 O GLN A 103 N LEU A 58 SHEET 7 A 7 ARG A 25 ASP A 29 -1 N LEU A 26 O ILE A 100 SHEET 1 B 5 ILE A 151 VAL A 154 0 SHEET 2 B 5 VAL A 161 ASP A 169 -1 O VAL A 161 N VAL A 154 SHEET 3 B 5 ARG A 113 PRO A 118 -1 N LEU A 117 O LYS A 164 SHEET 4 B 5 VAL A 181 CYS A 184 1 O HIS A 183 N ILE A 114 SHEET 5 B 5 ASP B 121 THR B 122 -1 O ASP B 121 N ILE A 182 SHEET 1 C 2 ARG A 144 ARG A 147 0 SHEET 2 C 2 TYR A 173 VAL A 176 -1 O VAL A 176 N ARG A 144 SHEET 1 D 7 ARG B 25 GLU B 30 0 SHEET 2 D 7 LYS B 81 MET B 84 1 O ILE B 82 N ASP B 29 SHEET 3 D 7 VAL B 38 LEU B 41 -1 N SER B 40 O ARG B 83 SHEET 4 D 7 GLU B 66 SER B 73 1 O ILE B 70 N VAL B 39 SHEET 5 D 7 THR B 56 LYS B 60 -1 N LEU B 59 O ALA B 67 SHEET 6 D 7 VAL B 99 PRO B 104 -1 O GLN B 103 N LEU B 58 SHEET 7 D 7 ARG B 25 GLU B 30 -1 N LEU B 26 O ILE B 100 SHEET 1 E 4 ILE B 151 GLY B 156 0 SHEET 2 E 4 ARG B 159 ASP B 169 -1 O PHE B 163 N PHE B 152 SHEET 3 E 4 ARG B 113 PRO B 118 -1 N LEU B 117 O LYS B 164 SHEET 4 E 4 VAL B 181 CYS B 184 1 O HIS B 183 N ILE B 114 SHEET 1 F 2 ARG B 144 ARG B 147 0 SHEET 2 F 2 TYR B 173 VAL B 176 -1 O VAL B 176 N ARG B 144 SHEET 1 G 5 ILE C 10 VAL C 14 0 SHEET 2 G 5 LEU C 3 GLY C 7 -1 N LEU C 3 O VAL C 14 SHEET 3 G 5 GLU C 68 GLU C 73 1 O ILE C 70 N LYS C 4 SHEET 4 G 5 THR C 35 PHE C 38 -1 N ARG C 37 O THR C 71 SHEET 5 G 5 GLN C 43 ASN C 46 -1 O ILE C 45 N MET C 36 SHEET 1 H 5 ILE D 10 LYS D 17 0 SHEET 2 H 5 SER D 0 GLY D 7 -1 N LEU D 3 O VAL D 14 SHEET 3 H 5 LYS D 69 GLU D 73 1 O ILE D 70 N LYS D 4 SHEET 4 H 5 THR D 35 PHE D 38 -1 N ARG D 37 O THR D 71 SHEET 5 H 5 GLN D 43 ASN D 46 -1 O GLN D 43 N PHE D 38 CISPEP 1 ASP A 169 PRO A 170 0 2.72 CISPEP 2 SER A 171 PRO A 172 0 3.43 CISPEP 3 ASP B 169 PRO B 170 0 -4.16 CISPEP 4 SER B 171 PRO B 172 0 -2.75 CISPEP 5 TYR C 40 PRO C 41 0 -7.94 CISPEP 6 TYR D 40 PRO D 41 0 -1.70 CRYST1 42.819 88.609 143.535 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023354 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011286 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006967 0.00000