HEADER SIGNALING PROTEIN/HYDROLASE 25-APR-13 4KDL TITLE CRYSTAL STRUCTURE OF P97/VCP N IN COMPLEX WITH OTU1 UBXL COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N DOMAIN (RESIDUES 23-196); COMPND 5 SYNONYM: TER ATPASE, 15S MG(2+)-ATPASE P97 SUBUNIT, VALOSIN- COMPND 6 CONTAINING PROTEIN, VCP; COMPND 7 EC: 3.6.4.6; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: UBIQUITIN THIOESTERASE OTU1; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: UBX-LIKE DOMAIN (RESIDUES 1-73); COMPND 13 SYNONYM: OTU DOMAIN-CONTAINING PROTEIN 1; COMPND 14 EC: 3.4.19.12; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VCP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 559292; SOURCE 15 STRAIN: ATCC 204508 / S288C; SOURCE 16 GENE: OTU1, YFL044C; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 19 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3); SOURCE 20 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 21 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS AAA ATPASE, UBX-LIKE DOMAIN, PROTEIN BINDING, PROTEIN-PROTEIN KEYWDS 2 COMPLEX, BETA-BARREL, BETA-GRASP, SIGNALING PROTEIN-HYDROLASE KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.J.KIM,E.E.KIM REVDAT 3 20-SEP-23 4KDL 1 SEQADV REVDAT 2 21-MAY-14 4KDL 1 JRNL REVDAT 1 19-MAR-14 4KDL 0 JRNL AUTH S.J.KIM,J.CHO,E.J.SONG,S.J.KIM,H.M.KIM,K.E.LEE,S.W.SUH, JRNL AUTH 2 E.E.KIM JRNL TITL STRUCTURAL BASIS FOR OVARIAN TUMOR DOMAIN-CONTAINING PROTEIN JRNL TITL 2 1 (OTU1) BINDING TO P97/VALOSIN-CONTAINING PROTEIN (VCP). JRNL REF J.BIOL.CHEM. V. 289 12264 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24610782 JRNL DOI 10.1074/JBC.M113.523936 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 26125 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1394 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1790 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE SET COUNT : 101 REMARK 3 BIN FREE R VALUE : 0.2310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1924 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 271 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.30000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : -0.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.120 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.115 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.962 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1949 ; 0.026 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2632 ; 2.145 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 240 ; 6.050 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;34.026 ;24.615 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 370 ;14.430 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;16.131 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 307 ; 0.173 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1445 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1211 ; 1.513 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1980 ; 2.661 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 738 ; 4.159 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 652 ; 6.994 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 196 REMARK 3 ORIGIN FOR THE GROUP (A): 15.6882 7.4816 -16.8695 REMARK 3 T TENSOR REMARK 3 T11: 0.0200 T22: 0.0400 REMARK 3 T33: 0.0392 T12: 0.0108 REMARK 3 T13: 0.0025 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 0.5136 L22: 0.9886 REMARK 3 L33: 0.5916 L12: 0.3343 REMARK 3 L13: -0.0763 L23: -0.1045 REMARK 3 S TENSOR REMARK 3 S11: -0.0295 S12: 0.0598 S13: 0.0131 REMARK 3 S21: -0.0203 S22: -0.0365 S23: 0.0491 REMARK 3 S31: 0.0321 S32: -0.0493 S33: 0.0660 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 73 REMARK 3 ORIGIN FOR THE GROUP (A): 16.3894 2.5420 8.9839 REMARK 3 T TENSOR REMARK 3 T11: 0.1091 T22: 0.0575 REMARK 3 T33: 0.0371 T12: 0.0185 REMARK 3 T13: 0.0162 T23: 0.0421 REMARK 3 L TENSOR REMARK 3 L11: 0.6694 L22: 0.8065 REMARK 3 L33: 3.3755 L12: 0.0146 REMARK 3 L13: -0.6369 L23: 0.6299 REMARK 3 S TENSOR REMARK 3 S11: -0.2445 S12: -0.0345 S13: -0.0053 REMARK 3 S21: 0.0056 S22: 0.0215 S23: 0.0540 REMARK 3 S31: 0.1637 S32: 0.3605 S33: 0.2230 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4KDL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079204. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97951 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27896 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : 0.09100 REMARK 200 FOR THE DATA SET : 23.8140 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 9.30 REMARK 200 R MERGE FOR SHELL (I) : 0.25200 REMARK 200 R SYM FOR SHELL (I) : 0.25200 REMARK 200 FOR SHELL : 8.750 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1E32 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG 4000, 0.1 M SODIUM ACETATE, PH REMARK 280 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.80200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.95750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.40150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.95750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.80200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.40150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 465 HIS A 6 REMARK 465 MET A 7 REMARK 465 ALA A 8 REMARK 465 SER A 9 REMARK 465 MET A 10 REMARK 465 THR A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 GLN A 14 REMARK 465 GLN A 15 REMARK 465 MET A 16 REMARK 465 GLY A 17 REMARK 465 ARG A 18 REMARK 465 GLY A 19 REMARK 465 SER A 20 REMARK 465 ASN A 21 REMARK 465 ARG A 22 REMARK 465 GLY B -16 REMARK 465 SER B -15 REMARK 465 HIS B -14 REMARK 465 MET B -13 REMARK 465 ALA B -12 REMARK 465 SER B -11 REMARK 465 MET B -10 REMARK 465 THR B -9 REMARK 465 GLY B -8 REMARK 465 GLY B -7 REMARK 465 GLN B -6 REMARK 465 GLN B -5 REMARK 465 MET B -4 REMARK 465 GLY B -3 REMARK 465 ARG B -2 REMARK 465 GLY B -1 REMARK 465 GLN B 48 REMARK 465 GLY B 49 REMARK 465 GLU B 50 REMARK 465 ASP B 51 REMARK 465 ALA B 52 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 32 -78.68 -104.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KDI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF P97/VCP N IN COMPLEX WITH OTU1 UBXL DBREF 4KDL A 21 196 UNP P55072 TERA_HUMAN 21 196 DBREF 4KDL B 1 73 UNP P43558 OTU1_YEAST 1 73 SEQADV 4KDL GLY A 4 UNP P55072 EXPRESSION TAG SEQADV 4KDL SER A 5 UNP P55072 EXPRESSION TAG SEQADV 4KDL HIS A 6 UNP P55072 EXPRESSION TAG SEQADV 4KDL MET A 7 UNP P55072 EXPRESSION TAG SEQADV 4KDL ALA A 8 UNP P55072 EXPRESSION TAG SEQADV 4KDL SER A 9 UNP P55072 EXPRESSION TAG SEQADV 4KDL MET A 10 UNP P55072 EXPRESSION TAG SEQADV 4KDL THR A 11 UNP P55072 EXPRESSION TAG SEQADV 4KDL GLY A 12 UNP P55072 EXPRESSION TAG SEQADV 4KDL GLY A 13 UNP P55072 EXPRESSION TAG SEQADV 4KDL GLN A 14 UNP P55072 EXPRESSION TAG SEQADV 4KDL GLN A 15 UNP P55072 EXPRESSION TAG SEQADV 4KDL MET A 16 UNP P55072 EXPRESSION TAG SEQADV 4KDL GLY A 17 UNP P55072 EXPRESSION TAG SEQADV 4KDL ARG A 18 UNP P55072 EXPRESSION TAG SEQADV 4KDL GLY A 19 UNP P55072 EXPRESSION TAG SEQADV 4KDL SER A 20 UNP P55072 EXPRESSION TAG SEQADV 4KDL GLY B -16 UNP P43558 EXPRESSION TAG SEQADV 4KDL SER B -15 UNP P43558 EXPRESSION TAG SEQADV 4KDL HIS B -14 UNP P43558 EXPRESSION TAG SEQADV 4KDL MET B -13 UNP P43558 EXPRESSION TAG SEQADV 4KDL ALA B -12 UNP P43558 EXPRESSION TAG SEQADV 4KDL SER B -11 UNP P43558 EXPRESSION TAG SEQADV 4KDL MET B -10 UNP P43558 EXPRESSION TAG SEQADV 4KDL THR B -9 UNP P43558 EXPRESSION TAG SEQADV 4KDL GLY B -8 UNP P43558 EXPRESSION TAG SEQADV 4KDL GLY B -7 UNP P43558 EXPRESSION TAG SEQADV 4KDL GLN B -6 UNP P43558 EXPRESSION TAG SEQADV 4KDL GLN B -5 UNP P43558 EXPRESSION TAG SEQADV 4KDL MET B -4 UNP P43558 EXPRESSION TAG SEQADV 4KDL GLY B -3 UNP P43558 EXPRESSION TAG SEQADV 4KDL ARG B -2 UNP P43558 EXPRESSION TAG SEQADV 4KDL GLY B -1 UNP P43558 EXPRESSION TAG SEQADV 4KDL SER B 0 UNP P43558 EXPRESSION TAG SEQRES 1 A 193 GLY SER HIS MET ALA SER MET THR GLY GLY GLN GLN MET SEQRES 2 A 193 GLY ARG GLY SER ASN ARG PRO ASN ARG LEU ILE VAL ASP SEQRES 3 A 193 GLU ALA ILE ASN GLU ASP ASN SER VAL VAL SER LEU SER SEQRES 4 A 193 GLN PRO LYS MET ASP GLU LEU GLN LEU PHE ARG GLY ASP SEQRES 5 A 193 THR VAL LEU LEU LYS GLY LYS LYS ARG ARG GLU ALA VAL SEQRES 6 A 193 CYS ILE VAL LEU SER ASP ASP THR CYS SER ASP GLU LYS SEQRES 7 A 193 ILE ARG MET ASN ARG VAL VAL ARG ASN ASN LEU ARG VAL SEQRES 8 A 193 ARG LEU GLY ASP VAL ILE SER ILE GLN PRO CYS PRO ASP SEQRES 9 A 193 VAL LYS TYR GLY LYS ARG ILE HIS VAL LEU PRO ILE ASP SEQRES 10 A 193 ASP THR VAL GLU GLY ILE THR GLY ASN LEU PHE GLU VAL SEQRES 11 A 193 TYR LEU LYS PRO TYR PHE LEU GLU ALA TYR ARG PRO ILE SEQRES 12 A 193 ARG LYS GLY ASP ILE PHE LEU VAL ARG GLY GLY MET ARG SEQRES 13 A 193 ALA VAL GLU PHE LYS VAL VAL GLU THR ASP PRO SER PRO SEQRES 14 A 193 TYR CYS ILE VAL ALA PRO ASP THR VAL ILE HIS CYS GLU SEQRES 15 A 193 GLY GLU PRO ILE LYS ARG GLU ASP GLU GLU GLU SEQRES 1 B 90 GLY SER HIS MET ALA SER MET THR GLY GLY GLN GLN MET SEQRES 2 B 90 GLY ARG GLY SER MET LYS LEU LYS VAL THR GLY ALA GLY SEQRES 3 B 90 ILE ASN GLN VAL VAL THR LEU LYS GLN ASP ALA THR LEU SEQRES 4 B 90 ASN ASP LEU ILE GLU HIS ILE ASN VAL ASP VAL LYS THR SEQRES 5 B 90 MET ARG PHE GLY TYR PRO PRO GLN ARG ILE ASN LEU GLN SEQRES 6 B 90 GLY GLU ASP ALA SER LEU GLY GLN THR GLN LEU ASP GLU SEQRES 7 B 90 LEU GLY ILE ASN SER GLY GLU LYS ILE THR ILE GLU FORMUL 3 HOH *271(H2 O) HELIX 1 1 SER A 42 LEU A 49 1 8 HELIX 2 2 ASN A 85 LEU A 92 1 8 HELIX 3 3 ILE A 119 GLU A 124 1 6 HELIX 4 4 ASN A 129 TYR A 134 1 6 HELIX 5 5 TYR A 134 LEU A 140 1 7 HELIX 6 6 LYS A 190 GLU A 194 5 5 HELIX 7 7 THR B 21 ILE B 29 1 9 HELIX 8 8 SER B 53 THR B 57 5 5 HELIX 9 9 LEU B 59 GLY B 63 5 5 SHEET 1 A 7 ARG A 25 ASP A 29 0 SHEET 2 A 7 LYS A 81 ARG A 83 1 O ILE A 82 N ASP A 29 SHEET 3 A 7 VAL A 38 LEU A 41 -1 N SER A 40 O ARG A 83 SHEET 4 A 7 GLU A 66 SER A 73 1 O LEU A 72 N VAL A 39 SHEET 5 A 7 THR A 56 LYS A 60 -1 N LEU A 59 O ALA A 67 SHEET 6 A 7 VAL A 99 PRO A 104 -1 O GLN A 103 N LEU A 58 SHEET 7 A 7 ARG A 25 ASP A 29 -1 N LEU A 26 O ILE A 100 SHEET 1 B 4 ILE A 151 VAL A 154 0 SHEET 2 B 4 VAL A 161 ASP A 169 -1 O PHE A 163 N PHE A 152 SHEET 3 B 4 ARG A 113 PRO A 118 -1 N LEU A 117 O LYS A 164 SHEET 4 B 4 VAL A 181 HIS A 183 1 O VAL A 181 N ILE A 114 SHEET 1 C 2 ARG A 144 ARG A 147 0 SHEET 2 C 2 TYR A 173 VAL A 176 -1 O CYS A 174 N ILE A 146 SHEET 1 D 5 ILE B 10 LEU B 16 0 SHEET 2 D 5 MET B 1 GLY B 7 -1 N LEU B 3 O VAL B 14 SHEET 3 D 5 GLU B 68 GLU B 73 1 O ILE B 70 N LYS B 4 SHEET 4 D 5 THR B 35 PHE B 38 -1 N ARG B 37 O THR B 71 SHEET 5 D 5 GLN B 43 ASN B 46 -1 O GLN B 43 N PHE B 38 CISPEP 1 ASP A 169 PRO A 170 0 2.15 CISPEP 2 SER A 171 PRO A 172 0 2.14 CISPEP 3 TYR B 40 PRO B 41 0 -6.24 CRYST1 43.604 60.803 111.915 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022934 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016447 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008935 0.00000