HEADER HYDROLASE 29-APR-13 4KGA TITLE CRYSTAL STRUCTURE OF KALLIKREIN-RELATED PEPTIDASE 4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: KALLIKREIN-4; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RELATED PEPTIDASE 4, UNP RESIDUES 31-253; COMPND 5 SYNONYM: ENAMEL MATRIX SERINE PROTEINASE 1, KALLIKREIN-LIKE PROTEIN COMPND 6 1, KLK-L1, PROSTASE, SERINE PROTEASE 17; COMPND 7 EC: 3.4.21.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KLK4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET12A-PROPSA-HK4 KEYWDS KLK4, KALLIKREIN-4, SERINE PROTEASE, PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR O.V.ILYICHOVA,J.E.SWEDBERG,S.J.DE VEER,K.C.SIT,J.M.HARRIS,A.M.BUCKLE REVDAT 5 08-NOV-23 4KGA 1 REMARK LINK REVDAT 4 15-NOV-17 4KGA 1 REMARK REVDAT 3 02-NOV-16 4KGA 1 JRNL REVDAT 2 09-MAR-16 4KGA 1 ATOM REVDAT 1 30-APR-14 4KGA 0 JRNL AUTH B.T.RILEY,O.ILYICHOVA,M.G.S.COSTA,B.T.POREBSKI,S.J.DE VEER, JRNL AUTH 2 J.E.SWEDBERG,I.KASS,J.M.HARRIS,D.E.HOKE,A.M.BUCKLE JRNL TITL DIRECT AND INDIRECT MECHANISMS OF KLK4 INHIBITION REVEALED JRNL TITL 2 BY STRUCTURE AND DYNAMICS JRNL REF SCI REP V. 6 35385 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27767076 JRNL DOI 10.1038/SREP35385 REMARK 2 REMARK 2 RESOLUTION. 2.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.950 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 17689 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 898 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.6652 - 4.2153 1.00 2908 148 0.1746 0.1979 REMARK 3 2 4.2153 - 3.3460 1.00 2801 154 0.1833 0.2394 REMARK 3 3 3.3460 - 2.9231 1.00 2754 154 0.2549 0.3152 REMARK 3 4 2.9231 - 2.6559 1.00 2805 140 0.2832 0.3461 REMARK 3 5 2.6559 - 2.4655 1.00 2769 134 0.3067 0.3389 REMARK 3 6 2.4655 - 2.3202 1.00 2754 168 0.3454 0.4061 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3307 REMARK 3 ANGLE : 0.905 4498 REMARK 3 CHIRALITY : 0.034 516 REMARK 3 PLANARITY : 0.004 585 REMARK 3 DIHEDRAL : 13.027 1145 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 17:67) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9342 -40.3139 16.4876 REMARK 3 T TENSOR REMARK 3 T11: 0.5211 T22: 0.5352 REMARK 3 T33: 0.1716 T12: 0.1318 REMARK 3 T13: -0.1390 T23: 0.0514 REMARK 3 L TENSOR REMARK 3 L11: 4.2748 L22: 3.8424 REMARK 3 L33: 2.8047 L12: 0.6200 REMARK 3 L13: 1.4579 L23: 1.7200 REMARK 3 S TENSOR REMARK 3 S11: -0.3354 S12: -1.3440 S13: -0.0379 REMARK 3 S21: 1.4041 S22: 0.2387 S23: 0.6038 REMARK 3 S31: -0.2028 S32: -0.3217 S33: 0.1806 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 68:90) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7173 -40.1650 21.1653 REMARK 3 T TENSOR REMARK 3 T11: 0.6209 T22: 0.8721 REMARK 3 T33: 0.3987 T12: 0.1533 REMARK 3 T13: -0.1518 T23: 0.0182 REMARK 3 L TENSOR REMARK 3 L11: 0.4842 L22: 2.6679 REMARK 3 L33: 2.3983 L12: 0.2022 REMARK 3 L13: -0.1463 L23: 1.7593 REMARK 3 S TENSOR REMARK 3 S11: 0.0954 S12: -0.9670 S13: -0.3667 REMARK 3 S21: 0.1530 S22: 0.1122 S23: -0.3895 REMARK 3 S31: -0.2631 S32: -0.4017 S33: -0.0526 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 91:160) REMARK 3 ORIGIN FOR THE GROUP (A): 24.9737 -38.0696 10.3919 REMARK 3 T TENSOR REMARK 3 T11: 0.4629 T22: 0.4669 REMARK 3 T33: 0.2680 T12: 0.0432 REMARK 3 T13: -0.1561 T23: -0.0424 REMARK 3 L TENSOR REMARK 3 L11: 3.2077 L22: 2.4107 REMARK 3 L33: 1.7821 L12: -0.2744 REMARK 3 L13: 0.2713 L23: -0.7404 REMARK 3 S TENSOR REMARK 3 S11: -0.2885 S12: -0.2918 S13: 0.5832 REMARK 3 S21: 0.2459 S22: 0.0395 S23: -0.0544 REMARK 3 S31: -0.0132 S32: -0.1836 S33: 0.2347 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 161:209) REMARK 3 ORIGIN FOR THE GROUP (A): 34.0769 -39.0028 4.6776 REMARK 3 T TENSOR REMARK 3 T11: 0.3239 T22: 0.2977 REMARK 3 T33: 0.3862 T12: 0.0029 REMARK 3 T13: -0.1181 T23: 0.0598 REMARK 3 L TENSOR REMARK 3 L11: 5.2805 L22: 2.6246 REMARK 3 L33: 1.6152 L12: -0.8680 REMARK 3 L13: -0.6548 L23: 0.8144 REMARK 3 S TENSOR REMARK 3 S11: -0.0692 S12: -0.3269 S13: 0.0859 REMARK 3 S21: 0.1967 S22: -0.0927 S23: -0.2936 REMARK 3 S31: -0.1641 S32: 0.3259 S33: 0.0374 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 210:239) REMARK 3 ORIGIN FOR THE GROUP (A): 26.5557 -41.6973 3.3632 REMARK 3 T TENSOR REMARK 3 T11: 0.2951 T22: 0.1817 REMARK 3 T33: 0.2956 T12: 0.0306 REMARK 3 T13: -0.0963 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 4.6214 L22: 3.4208 REMARK 3 L33: 2.3933 L12: 0.6231 REMARK 3 L13: -1.4333 L23: 0.1828 REMARK 3 S TENSOR REMARK 3 S11: 0.4614 S12: 0.5634 S13: -0.1496 REMARK 3 S21: 0.0170 S22: -0.2466 S23: -0.0262 REMARK 3 S31: 0.0308 S32: 0.1498 S33: 0.1120 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 17:54) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9943 -30.1100 -8.7912 REMARK 3 T TENSOR REMARK 3 T11: 0.5380 T22: 0.4467 REMARK 3 T33: 0.6052 T12: -0.0344 REMARK 3 T13: 0.1018 T23: -0.1155 REMARK 3 L TENSOR REMARK 3 L11: 2.3482 L22: 5.8619 REMARK 3 L33: 1.8526 L12: 1.0880 REMARK 3 L13: 0.0520 L23: -0.0647 REMARK 3 S TENSOR REMARK 3 S11: -0.4417 S12: 0.8823 S13: -0.7619 REMARK 3 S21: -1.4417 S22: 0.1474 S23: -0.6099 REMARK 3 S31: 0.0622 S32: 0.1378 S33: 0.2715 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 55:81) REMARK 3 ORIGIN FOR THE GROUP (A): -10.8736 -30.9064 -12.5937 REMARK 3 T TENSOR REMARK 3 T11: 0.6829 T22: 0.5859 REMARK 3 T33: 0.6469 T12: 0.0788 REMARK 3 T13: -0.0940 T23: -0.0997 REMARK 3 L TENSOR REMARK 3 L11: 0.4676 L22: 7.8505 REMARK 3 L33: 2.3062 L12: -1.3552 REMARK 3 L13: -1.0310 L23: 3.6903 REMARK 3 S TENSOR REMARK 3 S11: 0.2063 S12: 0.6407 S13: -0.1012 REMARK 3 S21: -1.4809 S22: -0.4037 S23: 0.0505 REMARK 3 S31: -0.4543 S32: -0.4873 S33: 0.0574 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 82:160) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7895 -27.4611 -2.8285 REMARK 3 T TENSOR REMARK 3 T11: 0.2505 T22: 0.2601 REMARK 3 T33: 0.4053 T12: -0.0090 REMARK 3 T13: 0.0676 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 3.6454 L22: 5.7133 REMARK 3 L33: 1.3545 L12: 0.9224 REMARK 3 L13: 0.3181 L23: 0.7065 REMARK 3 S TENSOR REMARK 3 S11: -0.0936 S12: 0.4444 S13: -0.4666 REMARK 3 S21: -0.3799 S22: -0.0266 S23: -0.0938 REMARK 3 S31: 0.0920 S32: -0.0149 S33: 0.1431 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 161:239) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1939 -20.6391 3.8379 REMARK 3 T TENSOR REMARK 3 T11: 0.3357 T22: 0.2987 REMARK 3 T33: 0.3526 T12: 0.0076 REMARK 3 T13: 0.0267 T23: 0.0812 REMARK 3 L TENSOR REMARK 3 L11: 3.3455 L22: 5.3926 REMARK 3 L33: 1.2345 L12: 0.9569 REMARK 3 L13: 0.9537 L23: 1.4436 REMARK 3 S TENSOR REMARK 3 S11: 0.0126 S12: 0.0010 S13: -0.1844 REMARK 3 S21: 0.2359 S22: -0.2431 S23: -0.1533 REMARK 3 S31: -0.1084 S32: 0.0879 S33: 0.1674 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KGA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079301. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95368 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17693 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.320 REMARK 200 RESOLUTION RANGE LOW (A) : 70.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : 0.09600 REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.79100 REMARK 200 R SYM FOR SHELL (I) : 0.79100 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2BDG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MM NICL2, 100MM TRIS, 20% PEG2000 , REMARK 280 PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 74A REMARK 465 ASP A 75 REMARK 465 GLU B 74 REMARK 465 ALA B 74A REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 20 CG CD OE1 OE2 REMARK 470 VAL A 34 CG1 CG2 REMARK 470 GLU A 36 CG CD OE1 OE2 REMARK 470 ASN A 37 CG OD1 ND2 REMARK 470 GLU A 38 CG CD OE1 OE2 REMARK 470 GLU A 74 CG CD OE1 OE2 REMARK 470 GLN A 76 CG CD OE1 NE2 REMARK 470 GLU A 84 CD OE1 OE2 REMARK 470 GLU A 93 OE1 OE2 REMARK 470 ARG A 96 CD NE CZ NH1 NH2 REMARK 470 GLU A 110 CD OE1 OE2 REMARK 470 SER A 113 OG REMARK 470 ASP A 116 OD1 OD2 REMARK 470 ARG A 119 CD NE CZ NH1 NH2 REMARK 470 ARG A 150 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 166 CG CD OE1 OE2 REMARK 470 ASN A 192 CG OD1 ND2 REMARK 470 LYS A 240 CE NZ REMARK 470 GLU B 36 CG CD OE1 OE2 REMARK 470 ASN B 37 CG OD1 ND2 REMARK 470 GLU B 38 CG CD OE1 OE2 REMARK 470 GLN B 50 CG CD OE1 NE2 REMARK 470 LEU B 73 CG CD1 CD2 REMARK 470 ASP B 75 CG OD1 OD2 REMARK 470 GLU B 84 CG CD OE1 OE2 REMARK 470 GLU B 93 OE1 OE2 REMARK 470 GLU B 110 CG CD OE1 OE2 REMARK 470 SER B 113 OG REMARK 470 ARG B 119 NE CZ NH1 NH2 REMARK 470 THR B 130 OG1 CG2 REMARK 470 LEU B 144 CG CD1 CD2 REMARK 470 ARG B 150 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 166 CG CD OE1 OE2 REMARK 470 ASN B 192 CG OD1 ND2 REMARK 470 LYS B 240 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 191 CB CYS A 220 1.79 REMARK 500 OD1 ASP B 21 NE2 GLN B 156 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 27 76.90 -117.89 REMARK 500 HIS A 71 -59.54 -145.77 REMARK 500 LEU A 99 -4.22 75.87 REMARK 500 SER A 115 -143.74 -136.04 REMARK 500 GLN B 27 76.26 -118.05 REMARK 500 HIS B 71 -57.93 -143.88 REMARK 500 LEU B 99 -3.04 75.99 REMARK 500 SER B 115 -143.61 -136.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 301 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 25 NE2 REMARK 620 2 GLU A 77 OE2 73.0 REMARK 620 3 GLU A 77 OE1 108.4 62.3 REMARK 620 4 HOH A 405 O 172.4 114.1 74.0 REMARK 620 5 HOH A 416 O 84.3 111.9 162.1 95.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 302 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 57 NE2 REMARK 620 2 SER A 195 OG 99.2 REMARK 620 3 HOH A 427 O 141.2 71.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 302 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 25 NE2 REMARK 620 2 GLU B 77 OE2 83.6 REMARK 620 3 GLU B 77 OE1 133.6 59.6 REMARK 620 4 HOH B 417 O 100.2 89.5 106.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 301 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 57 NE2 REMARK 620 2 SER B 195 OG 82.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BDG RELATED DB: PDB REMARK 900 RELATED ID: 2BDI RELATED DB: PDB REMARK 900 RELATED ID: 2BDH RELATED DB: PDB REMARK 900 RELATED ID: 4KEL RELATED DB: PDB REMARK 900 RELATED ID: 4K8Y RELATED DB: PDB REMARK 900 RELATED ID: 4K1E RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS SEQUENCE IS NATURAL VARIANT (VARIANT RS2569527) DBREF 4KGA A 16 244 UNP Q9Y5K2 KLK4_HUMAN 31 253 DBREF 4KGA B 16 244 UNP Q9Y5K2 KLK4_HUMAN 31 253 SEQADV 4KGA GLN A 186A UNP Q9Y5K2 HIS 197 SEE REMARK 999 SEQADV 4KGA GLN B 186A UNP Q9Y5K2 HIS 197 SEE REMARK 999 SEQRES 1 A 223 ILE ILE ASN GLY GLU ASP CYS SER PRO HIS SER GLN PRO SEQRES 2 A 223 TRP GLN ALA ALA LEU VAL MET GLU ASN GLU LEU PHE CYS SEQRES 3 A 223 SER GLY VAL LEU VAL HIS PRO GLN TRP VAL LEU SER ALA SEQRES 4 A 223 ALA HIS CYS PHE GLN ASN SER TYR THR ILE GLY LEU GLY SEQRES 5 A 223 LEU HIS SER LEU GLU ALA ASP GLN GLU PRO GLY SER GLN SEQRES 6 A 223 MET VAL GLU ALA SER LEU SER VAL ARG HIS PRO GLU TYR SEQRES 7 A 223 ASN ARG PRO LEU LEU ALA ASN ASP LEU MET LEU ILE LYS SEQRES 8 A 223 LEU ASP GLU SER VAL SER GLU SER ASP THR ILE ARG SER SEQRES 9 A 223 ILE SER ILE ALA SER GLN CYS PRO THR ALA GLY ASN SER SEQRES 10 A 223 CYS LEU VAL SER GLY TRP GLY LEU LEU ALA ASN GLY ARG SEQRES 11 A 223 MET PRO THR VAL LEU GLN CYS VAL ASN VAL SER VAL VAL SEQRES 12 A 223 SER GLU GLU VAL CYS SER LYS LEU TYR ASP PRO LEU TYR SEQRES 13 A 223 HIS PRO SER MET PHE CYS ALA GLY GLY GLY GLN ASP GLN SEQRES 14 A 223 LYS ASP SER CYS ASN GLY ASP SER GLY GLY PRO LEU ILE SEQRES 15 A 223 CYS ASN GLY TYR LEU GLN GLY LEU VAL SER PHE GLY LYS SEQRES 16 A 223 ALA PRO CYS GLY GLN VAL GLY VAL PRO GLY VAL TYR THR SEQRES 17 A 223 ASN LEU CYS LYS PHE THR GLU TRP ILE GLU LYS THR VAL SEQRES 18 A 223 GLN ALA SEQRES 1 B 223 ILE ILE ASN GLY GLU ASP CYS SER PRO HIS SER GLN PRO SEQRES 2 B 223 TRP GLN ALA ALA LEU VAL MET GLU ASN GLU LEU PHE CYS SEQRES 3 B 223 SER GLY VAL LEU VAL HIS PRO GLN TRP VAL LEU SER ALA SEQRES 4 B 223 ALA HIS CYS PHE GLN ASN SER TYR THR ILE GLY LEU GLY SEQRES 5 B 223 LEU HIS SER LEU GLU ALA ASP GLN GLU PRO GLY SER GLN SEQRES 6 B 223 MET VAL GLU ALA SER LEU SER VAL ARG HIS PRO GLU TYR SEQRES 7 B 223 ASN ARG PRO LEU LEU ALA ASN ASP LEU MET LEU ILE LYS SEQRES 8 B 223 LEU ASP GLU SER VAL SER GLU SER ASP THR ILE ARG SER SEQRES 9 B 223 ILE SER ILE ALA SER GLN CYS PRO THR ALA GLY ASN SER SEQRES 10 B 223 CYS LEU VAL SER GLY TRP GLY LEU LEU ALA ASN GLY ARG SEQRES 11 B 223 MET PRO THR VAL LEU GLN CYS VAL ASN VAL SER VAL VAL SEQRES 12 B 223 SER GLU GLU VAL CYS SER LYS LEU TYR ASP PRO LEU TYR SEQRES 13 B 223 HIS PRO SER MET PHE CYS ALA GLY GLY GLY GLN ASP GLN SEQRES 14 B 223 LYS ASP SER CYS ASN GLY ASP SER GLY GLY PRO LEU ILE SEQRES 15 B 223 CYS ASN GLY TYR LEU GLN GLY LEU VAL SER PHE GLY LYS SEQRES 16 B 223 ALA PRO CYS GLY GLN VAL GLY VAL PRO GLY VAL TYR THR SEQRES 17 B 223 ASN LEU CYS LYS PHE THR GLU TRP ILE GLU LYS THR VAL SEQRES 18 B 223 GLN ALA HET NI A 301 1 HET NI A 302 1 HET EDO A 303 4 HET NI B 301 1 HET NI B 302 1 HET EDO B 303 4 HETNAM NI NICKEL (II) ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NI 4(NI 2+) FORMUL 5 EDO 2(C2 H6 O2) FORMUL 9 HOH *56(H2 O) HELIX 1 1 ALA A 55 PHE A 59 5 5 HELIX 2 2 SER A 164 TYR A 172 1 9 HELIX 3 3 PHE A 234 ALA A 244 1 11 HELIX 4 4 ALA B 55 PHE B 59 5 5 HELIX 5 5 SER B 164 TYR B 172 1 9 HELIX 6 6 PHE B 234 ALA B 244 1 11 SHEET 1 A 7 GLU A 20 ASP A 21 0 SHEET 2 A 7 GLN A 156 SER A 161 -1 O CYS A 157 N GLU A 20 SHEET 3 A 7 SER A 135 GLY A 140 -1 N CYS A 136 O VAL A 160 SHEET 4 A 7 PRO A 198 CYS A 201 -1 O ILE A 200 N LEU A 137 SHEET 5 A 7 TYR A 208 PHE A 215 -1 O GLN A 210 N LEU A 199 SHEET 6 A 7 GLY A 226 ASN A 230 -1 O VAL A 227 N PHE A 215 SHEET 7 A 7 MET A 180 ALA A 183 -1 N PHE A 181 O TYR A 228 SHEET 1 B 7 GLN A 81 ALA A 85 0 SHEET 2 B 7 TYR A 63 LEU A 67 -1 N TYR A 63 O ALA A 85 SHEET 3 B 7 GLN A 30 MET A 35 -1 N ALA A 32 O GLY A 66 SHEET 4 B 7 GLU A 38 HIS A 48 -1 O GLU A 38 N MET A 35 SHEET 5 B 7 TRP A 51 SER A 54 -1 O LEU A 53 N VAL A 45 SHEET 6 B 7 MET A 104 LYS A 107 -1 O ILE A 106 N VAL A 52 SHEET 7 B 7 LEU A 87 ARG A 90 -1 N LEU A 87 O LYS A 107 SHEET 1 C 7 GLU B 20 ASP B 21 0 SHEET 2 C 7 GLN B 156 SER B 161 -1 O CYS B 157 N GLU B 20 SHEET 3 C 7 SER B 135 GLY B 140 -1 N CYS B 136 O VAL B 160 SHEET 4 C 7 PRO B 198 CYS B 201 -1 O ILE B 200 N LEU B 137 SHEET 5 C 7 TYR B 208 PHE B 215 -1 O GLN B 210 N LEU B 199 SHEET 6 C 7 GLY B 226 ASN B 230 -1 O VAL B 227 N PHE B 215 SHEET 7 C 7 MET B 180 ALA B 183 -1 N PHE B 181 O TYR B 228 SHEET 1 D 7 MET B 82 ALA B 85 0 SHEET 2 D 7 TYR B 63 GLY B 66 -1 N ILE B 65 O VAL B 83 SHEET 3 D 7 GLN B 30 MET B 35 -1 N ALA B 32 O GLY B 66 SHEET 4 D 7 GLU B 38 HIS B 48 -1 O GLU B 38 N MET B 35 SHEET 5 D 7 TRP B 51 SER B 54 -1 O LEU B 53 N VAL B 45 SHEET 6 D 7 MET B 104 LYS B 107 -1 O ILE B 106 N VAL B 52 SHEET 7 D 7 LEU B 87 ARG B 90 -1 N LEU B 87 O LYS B 107 SSBOND 1 CYS A 22 CYS A 157 1555 1555 2.03 SSBOND 2 CYS A 42 CYS A 58 1555 1555 2.03 SSBOND 3 CYS A 128 CYS A 232 1555 1555 2.03 SSBOND 4 CYS A 136 CYS A 201 1555 1555 2.03 SSBOND 5 CYS A 168 CYS A 182 1555 1555 2.03 SSBOND 6 CYS A 191 CYS A 220 1555 1555 2.04 SSBOND 7 CYS B 22 CYS B 157 1555 1555 2.03 SSBOND 8 CYS B 42 CYS B 58 1555 1555 2.03 SSBOND 9 CYS B 128 CYS B 232 1555 1555 2.03 SSBOND 10 CYS B 136 CYS B 201 1555 1555 2.03 SSBOND 11 CYS B 168 CYS B 182 1555 1555 2.03 SSBOND 12 CYS B 191 CYS B 220 1555 1555 2.03 LINK NE2 HIS A 25 NI NI A 301 1555 1555 2.31 LINK NE2 HIS A 57 NI NI A 302 1555 1555 1.99 LINK OE2 GLU A 77 NI NI A 301 1555 1555 1.89 LINK OE1 GLU A 77 NI NI A 301 1555 1555 2.30 LINK OG SER A 195 NI NI A 302 1555 1555 2.03 LINK NI NI A 301 O HOH A 405 1555 1555 1.90 LINK NI NI A 301 O HOH A 416 1555 1555 1.94 LINK NI NI A 302 O HOH A 427 1555 1555 1.97 LINK NE2 HIS B 25 NI NI B 302 1555 1555 1.94 LINK NE2 HIS B 57 NI NI B 301 1555 1555 2.57 LINK OE2 GLU B 77 NI NI B 302 1555 1555 2.09 LINK OE1 GLU B 77 NI NI B 302 1555 1555 2.31 LINK OG SER B 195 NI NI B 301 1555 1555 2.03 LINK NI NI B 302 O HOH B 417 1555 1555 1.99 CISPEP 1 ARG A 96 PRO A 97 0 3.44 CISPEP 2 ASP A 173 PRO A 174 0 4.32 CISPEP 3 ALA A 218 PRO A 219 0 2.17 CISPEP 4 ARG B 96 PRO B 97 0 2.67 CISPEP 5 ASP B 173 PRO B 174 0 3.77 CISPEP 6 ALA B 218 PRO B 219 0 1.14 SITE 1 AC1 4 HIS A 25 GLU A 77 HOH A 405 HOH A 416 SITE 1 AC2 6 HIS A 57 GLN A 186A SER A 195 SER A 214 SITE 2 AC2 6 HOH A 415 HOH A 427 SITE 1 AC3 3 HIS B 57 GLN B 186A SER B 195 SITE 1 AC4 4 HIS B 25 GLU B 77 HOH B 416 HOH B 417 SITE 1 AC5 2 LYS B 217 VAL B 222 CRYST1 99.308 99.308 41.019 90.00 90.00 90.00 P 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010070 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010070 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024379 0.00000