HEADER TRANSFERASE 29-APR-13 4KGB TITLE STRUCTURE OF SUCCINYL-COA: 3-KETOACID COA TRANSFERASE FROM DROSOPHILA TITLE 2 MELANOGASTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCCINYL-COA:3-KETOACID-COENZYME A TRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 34-516; COMPND 5 EC: 2.8.3.5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: CG1140, DMEL_CG1140; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: HT-PET28A KEYWDS PROTEIN FOLD, KETONE BODY CATABOLIC PROCESS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.C.WANG,Z.B.SHI,M.ZHANG REVDAT 2 08-NOV-23 4KGB 1 REMARK SEQADV REVDAT 1 23-OCT-13 4KGB 0 JRNL AUTH M.ZHANG,H.Y.XU,Y.C.WANG,Z.B.SHI,N.N.ZHANG JRNL TITL STRUCTURE OF SUCCINYL-COA:3-KETOACID COA TRANSFERASE FROM JRNL TITL 2 DROSOPHILA MELANOGASTER. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 69 1089 2013 JRNL REFN ESSN 1744-3091 JRNL PMID 24100554 JRNL DOI 10.1107/S1744309113024986 REMARK 2 REMARK 2 RESOLUTION. 2.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 27129 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1447 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.64 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.71 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1842 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 116 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6867 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 59 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.67000 REMARK 3 B22 (A**2) : 3.96000 REMARK 3 B33 (A**2) : -3.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.355 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.232 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.975 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.887 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6979 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6880 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9439 ; 1.677 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15853 ; 1.048 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 922 ; 7.070 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 257 ;40.569 ;25.292 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1192 ;18.204 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;17.809 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1097 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7916 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1423 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 34 515 B 34 515 27510 0.09 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KGB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079302. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28630 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.640 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.33800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB CODE 1OOY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM SULFATE, 0.1M BIS-TRIS PH REMARK 280 5.5, 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.31900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.22850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.96050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.22850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.31900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.96050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 30 REMARK 465 ALA A 31 REMARK 465 MET A 32 REMARK 465 ALA A 33 REMARK 465 LYS A 282 REMARK 465 ASP A 283 REMARK 465 PRO A 284 REMARK 465 SER A 285 REMARK 465 LYS A 286 REMARK 465 PRO A 287 REMARK 465 ALA A 288 REMARK 465 PRO A 289 REMARK 465 PRO A 290 REMARK 465 PRO A 291 REMARK 465 ILE A 411 REMARK 465 PRO A 412 REMARK 465 GLY A 413 REMARK 465 LYS A 414 REMARK 465 LEU A 415 REMARK 465 GLY A 418 REMARK 465 VAL A 516 REMARK 465 GLY B 30 REMARK 465 ALA B 31 REMARK 465 MET B 32 REMARK 465 ALA B 33 REMARK 465 LYS B 170 REMARK 465 ASP B 171 REMARK 465 GLU B 280 REMARK 465 PRO B 281 REMARK 465 LYS B 282 REMARK 465 ASP B 283 REMARK 465 PRO B 284 REMARK 465 SER B 285 REMARK 465 LYS B 286 REMARK 465 PRO B 287 REMARK 465 ALA B 288 REMARK 465 PRO B 289 REMARK 465 PRO B 290 REMARK 465 ILE B 411 REMARK 465 PRO B 412 REMARK 465 GLY B 413 REMARK 465 LYS B 414 REMARK 465 LEU B 415 REMARK 465 VAL B 416 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 89 CG OD1 OD2 REMARK 470 GLU A 112 CG CD OE1 OE2 REMARK 470 GLU A 280 CG CD OE1 OE2 REMARK 470 ASN A 292 CG OD1 ND2 REMARK 470 TRP A 409 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 409 CZ3 CH2 REMARK 470 MET A 410 CG SD CE REMARK 470 VAL A 416 CG1 CG2 REMARK 470 MET A 419 CG SD CE REMARK 470 GLU B 38 CG CD OE1 OE2 REMARK 470 GLU B 112 CG CD OE1 OE2 REMARK 470 GLU B 124 CG CD OE1 OE2 REMARK 470 LYS B 173 CG CD CE NZ REMARK 470 GLU B 179 CG CD OE1 OE2 REMARK 470 ARG B 272 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 273 CG1 CG2 REMARK 470 LYS B 331 CG CD CE NZ REMARK 470 LYS B 352 CG CD CE NZ REMARK 470 ASP B 380 CG OD1 OD2 REMARK 470 ASP B 405 CG OD1 OD2 REMARK 470 LYS B 417 CG CD CE NZ REMARK 470 GLU B 475 CG CD OE1 OE2 REMARK 470 VAL B 516 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 146 OG SER A 196 1.96 REMARK 500 O ILE B 146 OG SER B 196 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 358 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 112 -36.19 115.82 REMARK 500 GLU A 122 -9.78 -59.58 REMARK 500 LYS A 173 104.22 85.57 REMARK 500 LYS A 219 -127.80 57.55 REMARK 500 ASN A 223 -115.01 33.72 REMARK 500 ASN A 408 -153.61 -126.99 REMARK 500 TRP A 409 -128.56 73.07 REMARK 500 THR A 498 104.07 68.51 REMARK 500 GLU B 122 -9.61 -59.52 REMARK 500 LYS B 219 -128.47 58.80 REMARK 500 ARG B 222 -70.54 -55.60 REMARK 500 ASN B 223 -118.90 34.52 REMARK 500 LYS B 331 -64.04 -8.26 REMARK 500 ASN B 408 43.18 -168.86 REMARK 500 ARG B 442 -66.74 72.95 REMARK 500 SER B 445 86.29 65.31 REMARK 500 PRO B 515 154.55 -49.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 34 LYS A 35 -144.73 REMARK 500 ASP A 171 GLY A 172 -124.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 601 DBREF 4KGB A 34 516 UNP Q9W058 Q9W058_DROME 34 516 DBREF 4KGB B 34 516 UNP Q9W058 Q9W058_DROME 34 516 SEQADV 4KGB GLY A 30 UNP Q9W058 EXPRESSION TAG SEQADV 4KGB ALA A 31 UNP Q9W058 EXPRESSION TAG SEQADV 4KGB MET A 32 UNP Q9W058 EXPRESSION TAG SEQADV 4KGB ALA A 33 UNP Q9W058 EXPRESSION TAG SEQADV 4KGB GLY B 30 UNP Q9W058 EXPRESSION TAG SEQADV 4KGB ALA B 31 UNP Q9W058 EXPRESSION TAG SEQADV 4KGB MET B 32 UNP Q9W058 EXPRESSION TAG SEQADV 4KGB ALA B 33 UNP Q9W058 EXPRESSION TAG SEQRES 1 A 487 GLY ALA MET ALA GLY LYS ILE TYR GLU SER ALA ILE ASP SEQRES 2 A 487 ALA VAL ALA ASP VAL GLN ASP GLY ALA GLN ILE LEU PHE SEQRES 3 A 487 GLY GLY PHE GLY ILE CYS GLY ILE PRO GLU LYS MET ILE SEQRES 4 A 487 ASN ALA LEU LYS GLN LYS GLY VAL LYS ASN ILE THR GLY SEQRES 5 A 487 VAL SER ASN ASN GLY GLY VAL ASP ASP THR GLY LEU GLY SEQRES 6 A 487 VAL LEU ILE LYS GLN LYS GLN VAL SER LYS VAL ILE GLY SEQRES 7 A 487 SER TYR VAL GLY GLU ASN THR GLU LEU VAL ARG GLN TYR SEQRES 8 A 487 LEU GLU GLY GLU LEU ALA VAL GLU LEU THR PRO GLN GLY SEQRES 9 A 487 THR LEU ALA GLU LYS ILE ARG ALA GLY GLY ALA GLY ILE SEQRES 10 A 487 PRO ALA PHE TYR THR PRO THR GLY TYR ALA THR LEU VAL SEQRES 11 A 487 GLN GLU GLY GLY ALA PRO ILE LYS TYR SER LYS ASP GLY SEQRES 12 A 487 LYS VAL GLU ILE SER SER GLU LYS LYS PRO VAL LYS GLU SEQRES 13 A 487 PHE ASN GLY LYS ASN TYR VAL MET GLU GLU SER ILE PHE SEQRES 14 A 487 ALA ASP PHE ALA PHE VAL LYS ALA GLN LYS ALA ASP PRO SEQRES 15 A 487 LEU GLY ASN LEU VAL PHE ASN LYS ALA ALA ARG ASN PHE SEQRES 16 A 487 ASN ALA PRO MET CYS ARG ALA ALA LYS ILE THR VAL ALA SEQRES 17 A 487 GLU VAL GLU GLU ILE VAL PRO ILE GLY ALA LEU SER PRO SEQRES 18 A 487 ASP GLU ILE HIS VAL PRO GLY ILE TYR ILE ASN ARG ILE SEQRES 19 A 487 PHE LYS GLY THR ASN TYR ASN LYS ARG VAL GLU ARG LEU SEQRES 20 A 487 ARG ILE THR GLU PRO LYS ASP PRO SER LYS PRO ALA PRO SEQRES 21 A 487 PRO PRO ASN PRO ALA GLN VAL LEU ARG GLU ARG ILE ALA SEQRES 22 A 487 ARG ARG VAL ALA LEU GLU PHE HIS ASP GLY MET TYR ALA SEQRES 23 A 487 ASN LEU GLY ILE GLY ILE PRO VAL LEU SER SER ASN TYR SEQRES 24 A 487 ILE PRO LYS GLY MET ASN VAL MET LEU GLN SER GLU ASN SEQRES 25 A 487 GLY ILE LEU GLY LEU GLY PRO PHE PRO THR LYS ASP LYS SEQRES 26 A 487 VAL ASP PRO ASP LEU ILE ASN ALA GLY LYS GLU SER VAL SEQRES 27 A 487 THR VAL VAL PRO GLY ALA SER TYR PHE GLY SER ASP ASP SEQRES 28 A 487 SER PHE ALA MET ILE ARG GLY GLY HIS VAL ASP ILE THR SEQRES 29 A 487 ILE LEU GLY ALA MET GLU VAL SER ALA THR GLY ASP LEU SEQRES 30 A 487 ALA ASN TRP MET ILE PRO GLY LYS LEU VAL LYS GLY MET SEQRES 31 A 487 GLY GLY ALA MET ASP LEU VAL ALA ALA PRO GLY THR LYS SEQRES 32 A 487 VAL ILE ILE THR MET GLU HIS ASN ALA ARG ASP GLY SER SEQRES 33 A 487 PRO LYS ILE LEU ASP THR CYS SER LEU PRO LEU THR GLY SEQRES 34 A 487 LYS GLY VAL ILE ASP MET ILE ILE SER GLU LYS ALA VAL SEQRES 35 A 487 PHE THR VAL GLU LYS GLY VAL GLY LEU THR LEU ILE GLU SEQRES 36 A 487 VAL ALA GLU GLY TYR THR VAL ASP ASP ILE ILE ALA SER SEQRES 37 A 487 THR GLY ALA LYS PHE THR VAL SER PRO ASN LEU LYS LYS SEQRES 38 A 487 MET GLY GLN ILE PRO VAL SEQRES 1 B 487 GLY ALA MET ALA GLY LYS ILE TYR GLU SER ALA ILE ASP SEQRES 2 B 487 ALA VAL ALA ASP VAL GLN ASP GLY ALA GLN ILE LEU PHE SEQRES 3 B 487 GLY GLY PHE GLY ILE CYS GLY ILE PRO GLU LYS MET ILE SEQRES 4 B 487 ASN ALA LEU LYS GLN LYS GLY VAL LYS ASN ILE THR GLY SEQRES 5 B 487 VAL SER ASN ASN GLY GLY VAL ASP ASP THR GLY LEU GLY SEQRES 6 B 487 VAL LEU ILE LYS GLN LYS GLN VAL SER LYS VAL ILE GLY SEQRES 7 B 487 SER TYR VAL GLY GLU ASN THR GLU LEU VAL ARG GLN TYR SEQRES 8 B 487 LEU GLU GLY GLU LEU ALA VAL GLU LEU THR PRO GLN GLY SEQRES 9 B 487 THR LEU ALA GLU LYS ILE ARG ALA GLY GLY ALA GLY ILE SEQRES 10 B 487 PRO ALA PHE TYR THR PRO THR GLY TYR ALA THR LEU VAL SEQRES 11 B 487 GLN GLU GLY GLY ALA PRO ILE LYS TYR SER LYS ASP GLY SEQRES 12 B 487 LYS VAL GLU ILE SER SER GLU LYS LYS PRO VAL LYS GLU SEQRES 13 B 487 PHE ASN GLY LYS ASN TYR VAL MET GLU GLU SER ILE PHE SEQRES 14 B 487 ALA ASP PHE ALA PHE VAL LYS ALA GLN LYS ALA ASP PRO SEQRES 15 B 487 LEU GLY ASN LEU VAL PHE ASN LYS ALA ALA ARG ASN PHE SEQRES 16 B 487 ASN ALA PRO MET CYS ARG ALA ALA LYS ILE THR VAL ALA SEQRES 17 B 487 GLU VAL GLU GLU ILE VAL PRO ILE GLY ALA LEU SER PRO SEQRES 18 B 487 ASP GLU ILE HIS VAL PRO GLY ILE TYR ILE ASN ARG ILE SEQRES 19 B 487 PHE LYS GLY THR ASN TYR ASN LYS ARG VAL GLU ARG LEU SEQRES 20 B 487 ARG ILE THR GLU PRO LYS ASP PRO SER LYS PRO ALA PRO SEQRES 21 B 487 PRO PRO ASN PRO ALA GLN VAL LEU ARG GLU ARG ILE ALA SEQRES 22 B 487 ARG ARG VAL ALA LEU GLU PHE HIS ASP GLY MET TYR ALA SEQRES 23 B 487 ASN LEU GLY ILE GLY ILE PRO VAL LEU SER SER ASN TYR SEQRES 24 B 487 ILE PRO LYS GLY MET ASN VAL MET LEU GLN SER GLU ASN SEQRES 25 B 487 GLY ILE LEU GLY LEU GLY PRO PHE PRO THR LYS ASP LYS SEQRES 26 B 487 VAL ASP PRO ASP LEU ILE ASN ALA GLY LYS GLU SER VAL SEQRES 27 B 487 THR VAL VAL PRO GLY ALA SER TYR PHE GLY SER ASP ASP SEQRES 28 B 487 SER PHE ALA MET ILE ARG GLY GLY HIS VAL ASP ILE THR SEQRES 29 B 487 ILE LEU GLY ALA MET GLU VAL SER ALA THR GLY ASP LEU SEQRES 30 B 487 ALA ASN TRP MET ILE PRO GLY LYS LEU VAL LYS GLY MET SEQRES 31 B 487 GLY GLY ALA MET ASP LEU VAL ALA ALA PRO GLY THR LYS SEQRES 32 B 487 VAL ILE ILE THR MET GLU HIS ASN ALA ARG ASP GLY SER SEQRES 33 B 487 PRO LYS ILE LEU ASP THR CYS SER LEU PRO LEU THR GLY SEQRES 34 B 487 LYS GLY VAL ILE ASP MET ILE ILE SER GLU LYS ALA VAL SEQRES 35 B 487 PHE THR VAL GLU LYS GLY VAL GLY LEU THR LEU ILE GLU SEQRES 36 B 487 VAL ALA GLU GLY TYR THR VAL ASP ASP ILE ILE ALA SER SEQRES 37 B 487 THR GLY ALA LYS PHE THR VAL SER PRO ASN LEU LYS LYS SEQRES 38 B 487 MET GLY GLN ILE PRO VAL HET SO4 B 601 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *59(H2 O) HELIX 1 1 SER A 39 VAL A 44 1 6 HELIX 2 2 PRO A 64 GLY A 75 1 12 HELIX 3 3 LEU A 93 GLN A 99 1 7 HELIX 4 4 ASN A 113 GLU A 122 1 10 HELIX 5 5 PRO A 131 ALA A 144 1 14 HELIX 6 6 THR A 157 GLY A 162 1 6 HELIX 7 7 ASN A 218 ASN A 223 5 6 HELIX 8 8 PHE A 224 CYS A 229 1 6 HELIX 9 9 PRO A 256 ILE A 260 5 5 HELIX 10 10 PRO A 293 ALA A 306 1 14 HELIX 11 11 LEU A 307 PHE A 309 5 3 HELIX 12 12 GLY A 320 SER A 325 1 6 HELIX 13 13 SER A 326 ILE A 329 5 4 HELIX 14 14 THR A 351 VAL A 355 5 5 HELIX 15 15 GLY A 377 GLY A 387 1 11 HELIX 16 16 GLY A 421 ALA A 428 1 8 HELIX 17 17 THR A 490 SER A 497 1 8 HELIX 18 18 SER B 39 VAL B 44 1 6 HELIX 19 19 PRO B 64 GLY B 75 1 12 HELIX 20 20 LEU B 93 GLN B 99 1 7 HELIX 21 21 ASN B 113 GLU B 122 1 10 HELIX 22 22 PRO B 131 ALA B 144 1 14 HELIX 23 23 THR B 157 GLY B 162 1 6 HELIX 24 24 ASN B 218 ASN B 223 5 6 HELIX 25 25 PHE B 224 CYS B 229 1 6 HELIX 26 26 PRO B 256 ILE B 260 5 5 HELIX 27 27 ASN B 292 ALA B 306 1 15 HELIX 28 28 LEU B 307 PHE B 309 5 3 HELIX 29 29 GLY B 320 SER B 325 1 6 HELIX 30 30 SER B 326 ILE B 329 5 4 HELIX 31 31 THR B 351 VAL B 355 5 5 HELIX 32 32 GLY B 377 GLY B 387 1 11 HELIX 33 33 GLY B 421 ALA B 428 1 8 HELIX 34 34 THR B 490 SER B 497 1 8 SHEET 1 A 8 LYS A 35 ILE A 36 0 SHEET 2 A 8 ARG A 262 LYS A 265 1 O ILE A 263 N LYS A 35 SHEET 3 A 8 ALA A 232 VAL A 239 1 N VAL A 239 O PHE A 264 SHEET 4 A 8 ALA A 199 LYS A 205 1 N ALA A 202 O VAL A 236 SHEET 5 A 8 GLN A 52 PHE A 55 1 N LEU A 54 O PHE A 203 SHEET 6 A 8 ILE A 79 VAL A 82 1 O VAL A 82 N ILE A 53 SHEET 7 A 8 VAL A 102 GLY A 107 1 O LYS A 104 N GLY A 81 SHEET 8 A 8 ALA A 126 LEU A 129 1 O ALA A 126 N SER A 103 SHEET 1 B 3 ALA A 148 THR A 151 0 SHEET 2 B 3 LYS A 189 GLU A 195 -1 O VAL A 192 N THR A 151 SHEET 3 B 3 VAL A 183 PHE A 186 -1 N PHE A 186 O LYS A 189 SHEET 1 C 2 PRO A 165 TYR A 168 0 SHEET 2 C 2 VAL A 174 SER A 177 -1 O GLU A 175 N LYS A 167 SHEET 1 D 3 LEU A 215 VAL A 216 0 SHEET 2 D 3 LYS A 208 ALA A 209 -1 N LYS A 208 O VAL A 216 SHEET 3 D 3 GLU A 241 ILE A 242 1 O GLU A 241 N ALA A 209 SHEET 1 E10 VAL A 369 TYR A 375 0 SHEET 2 E10 ILE A 343 LEU A 346 -1 N LEU A 344 O SER A 374 SHEET 3 E10 VAL A 335 SER A 339 -1 N SER A 339 O ILE A 343 SHEET 4 E10 MET A 313 LEU A 317 1 N ALA A 315 O GLN A 338 SHEET 5 E10 ILE A 392 LEU A 395 1 O ILE A 394 N ASN A 316 SHEET 6 E10 LYS A 432 THR A 436 1 O THR A 436 N LEU A 395 SHEET 7 E10 MET A 464 ILE A 466 1 O MET A 464 N ILE A 435 SHEET 8 E10 ALA A 470 GLU A 475 -1 O PHE A 472 N ILE A 465 SHEET 9 E10 GLY A 479 VAL A 485 -1 O ILE A 483 N VAL A 471 SHEET 10 E10 THR A 503 LYS A 510 1 O SER A 505 N LEU A 482 SHEET 1 F 4 ILE A 448 LEU A 449 0 SHEET 2 F 4 GLU A 399 SER A 401 1 N VAL A 400 O LEU A 449 SHEET 3 F 4 LEU A 406 ALA A 407 -1 O ALA A 407 N GLU A 399 SHEET 4 F 4 LEU A 456 GLY A 458 -1 O THR A 457 N LEU A 406 SHEET 1 G 2 ASN A 440 ALA A 441 0 SHEET 2 G 2 SER A 445 PRO A 446 -1 O SER A 445 N ALA A 441 SHEET 1 H 7 ALA B 126 LEU B 129 0 SHEET 2 H 7 VAL B 102 GLY B 107 1 N VAL B 105 O GLU B 128 SHEET 3 H 7 ILE B 79 VAL B 82 1 N GLY B 81 O LYS B 104 SHEET 4 H 7 GLN B 52 PHE B 55 1 N ILE B 53 O VAL B 82 SHEET 5 H 7 ALA B 199 LYS B 205 1 O PHE B 203 N LEU B 54 SHEET 6 H 7 ALA B 232 VAL B 239 1 O VAL B 236 N ALA B 202 SHEET 7 H 7 ARG B 262 LYS B 265 1 O ARG B 262 N ALA B 237 SHEET 1 I 3 ALA B 148 THR B 151 0 SHEET 2 I 3 LYS B 189 GLU B 195 -1 O VAL B 192 N THR B 151 SHEET 3 I 3 VAL B 183 PHE B 186 -1 N PHE B 186 O LYS B 189 SHEET 1 J 2 PRO B 165 TYR B 168 0 SHEET 2 J 2 VAL B 174 SER B 177 -1 O GLU B 175 N LYS B 167 SHEET 1 K 3 LEU B 215 VAL B 216 0 SHEET 2 K 3 LYS B 208 ALA B 209 -1 N LYS B 208 O VAL B 216 SHEET 3 K 3 GLU B 241 ILE B 242 1 O GLU B 241 N ALA B 209 SHEET 1 L10 VAL B 369 TYR B 375 0 SHEET 2 L10 ILE B 343 LEU B 346 -1 N LEU B 344 O SER B 374 SHEET 3 L10 VAL B 335 SER B 339 -1 N SER B 339 O ILE B 343 SHEET 4 L10 MET B 313 LEU B 317 1 N ALA B 315 O GLN B 338 SHEET 5 L10 ILE B 392 LEU B 395 1 O ILE B 394 N ASN B 316 SHEET 6 L10 LYS B 432 THR B 436 1 O LYS B 432 N THR B 393 SHEET 7 L10 MET B 464 ILE B 466 1 O MET B 464 N ILE B 435 SHEET 8 L10 ALA B 470 GLU B 475 -1 O PHE B 472 N ILE B 465 SHEET 9 L10 GLY B 479 VAL B 485 -1 O ILE B 483 N VAL B 471 SHEET 10 L10 THR B 503 LYS B 510 1 O SER B 505 N LEU B 482 SHEET 1 M 3 LEU B 406 ALA B 407 0 SHEET 2 M 3 GLU B 399 SER B 401 -1 N GLU B 399 O ALA B 407 SHEET 3 M 3 ILE B 448 LEU B 449 1 O LEU B 449 N VAL B 400 CISPEP 1 GLY A 172 LYS A 173 0 2.30 CISPEP 2 LYS A 331 GLY A 332 0 -5.43 CISPEP 3 VAL A 416 LYS A 417 0 -7.30 CISPEP 4 GLY A 420 GLY A 421 0 -7.89 CISPEP 5 GLY B 172 LYS B 173 0 -9.09 CISPEP 6 PRO B 291 ASN B 292 0 6.94 CISPEP 7 GLY B 444 SER B 445 0 24.11 SITE 1 AC1 2 PRO B 429 GLY B 430 CRYST1 76.638 101.921 122.457 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013048 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009812 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008166 0.00000