HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 30-APR-13 4KH9 TITLE CRYSTAL STRUCTURE OF A DUF4785 FAMILY PROTEIN (LPG0956) FROM TITLE 2 LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA STR. PHILADELPHIA 1 AT 2.00 TITLE 3 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 272624; SOURCE 4 STRAIN: PHILADELPHIA 1; SOURCE 5 GENE: LPG0956, YP_094990.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS THREE DOMAINS PROTEIN, PF16024 FAMILY, DUF4785, STRUCTURAL GENOMICS, KEYWDS 2 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI-BIOLOGY, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 4KH9 1 REMARK SEQADV LINK REVDAT 4 24-JAN-18 4KH9 1 JRNL REVDAT 3 15-NOV-17 4KH9 1 REMARK REVDAT 2 24-DEC-14 4KH9 1 TITLE REVDAT 1 03-JUL-13 4KH9 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN (LPG0956) FROM JRNL TITL 2 LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA STR. PHILADELPHIA JRNL TITL 3 1 AT 2.00 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 3 NUMBER OF REFLECTIONS : 47471 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2410 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.05 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.50 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3569 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2098 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3394 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE : 0.2266 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 175 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5743 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 242 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.65050 REMARK 3 B22 (A**2) : 0.95600 REMARK 3 B33 (A**2) : 0.69450 REMARK 3 B12 (A**2) : 3.23430 REMARK 3 B13 (A**2) : 1.38330 REMARK 3 B23 (A**2) : 0.44650 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.298 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5949 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8070 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2824 ; 4.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 167 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 848 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5949 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 785 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6479 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.10 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.82 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.51 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|0 - 390} REMARK 3 ORIGIN FOR THE GROUP (A): 19.6606 6.0958 8.8178 REMARK 3 T TENSOR REMARK 3 T11: -0.0810 T22: -0.0857 REMARK 3 T33: -0.0232 T12: -0.0078 REMARK 3 T13: 0.0337 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.3638 L22: 0.4243 REMARK 3 L33: 0.9788 L12: 0.1210 REMARK 3 L13: 0.3335 L23: 0.1211 REMARK 3 S TENSOR REMARK 3 S11: -0.0282 S12: -0.0584 S13: -0.0238 REMARK 3 S21: 0.0385 S22: 0.0199 S23: 0.0132 REMARK 3 S31: 0.0132 S32: 0.0793 S33: 0.0083 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {B|0 - 389} REMARK 3 ORIGIN FOR THE GROUP (A): 9.5502 36.8555 6.8890 REMARK 3 T TENSOR REMARK 3 T11: -0.1029 T22: -0.0661 REMARK 3 T33: -0.0131 T12: -0.0109 REMARK 3 T13: -0.0606 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 0.3277 L22: 0.6383 REMARK 3 L33: 0.6805 L12: 0.0982 REMARK 3 L13: -0.4367 L23: 0.1108 REMARK 3 S TENSOR REMARK 3 S11: -0.0394 S12: -0.0066 S13: 0.0151 REMARK 3 S21: 0.0113 S22: 0.0030 S23: 0.0056 REMARK 3 S31: -0.0288 S32: -0.0343 S33: 0.0364 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 3.NCS RESTRAINTS WERE IMPOSED BY AUTOBUSTER'S LSSR REMARK 3 PROCEDURE (-AUTONCS). 4. CALCIUM, PEG (PEG AND 1PE) ARE PRESENT REMARK 3 IN CRYSTALLIZATION/CRYO CONDITIONS. REMARK 4 REMARK 4 4KH9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079336. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.83 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97867 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING); REMARK 200 SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE JULY 4, 2012 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47483 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 45.537 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.3 REMARK 200 DATA REDUNDANCY : 3.660 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.65500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.160 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CALCIUM ACETATE, 10.0% REMARK 280 POLYETHYLENE GLYCOL 8000, 0.1M IMIDAZOLE PH 7.83, NANODROP, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 52 REMARK 465 PRO A 53 REMARK 465 LEU A 54 REMARK 465 ASN A 55 REMARK 465 ASN A 56 REMARK 465 LYS A 322 REMARK 465 ASN A 323 REMARK 465 GLY A 324 REMARK 465 HIS A 354 REMARK 465 ASN A 355 REMARK 465 GLN A 356 REMARK 465 VAL A 391 REMARK 465 ASP A 392 REMARK 465 THR B 50 REMARK 465 ASN B 51 REMARK 465 GLU B 52 REMARK 465 PRO B 53 REMARK 465 LEU B 54 REMARK 465 ASN B 55 REMARK 465 ASN B 56 REMARK 465 ASN B 57 REMARK 465 ILE B 58 REMARK 465 GLY B 324 REMARK 465 LYS B 325 REMARK 465 LEU B 390 REMARK 465 VAL B 391 REMARK 465 ASP B 392 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 51 CG OD1 ND2 REMARK 470 ASN A 57 CG OD1 ND2 REMARK 470 ASN A 131 CG OD1 ND2 REMARK 470 ILE A 207 CG1 CG2 CD1 REMARK 470 LYS A 297 CG CD CE NZ REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 ILE B 207 CG1 CG2 CD1 REMARK 470 SER B 295 OG REMARK 470 LYS B 297 CG CD CE NZ REMARK 470 ASN B 323 CG OD1 ND2 REMARK 470 GLN B 383 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 299 99.71 -62.64 REMARK 500 LEU B 299 98.40 -59.36 REMARK 500 GLN B 356 63.59 38.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 214 OD2 REMARK 620 2 ASP A 214 OD1 42.2 REMARK 620 3 HOH A 533 O 143.3 117.1 REMARK 620 4 HOH B 693 O 90.7 112.0 124.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 45 OD1 REMARK 620 2 ASP B 45 OD2 51.7 REMARK 620 3 HOH B 620 O 82.8 81.9 REMARK 620 4 HOH B 697 O 75.4 126.9 87.8 REMARK 620 5 HOH B 698 O 154.3 154.0 98.0 78.9 REMARK 620 6 HOH B 720 O 124.3 75.0 107.0 155.9 80.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 214 OD2 REMARK 620 2 ASP B 214 OD1 49.3 REMARK 620 3 HOH B 631 O 87.8 95.0 REMARK 620 4 HOH B 702 O 88.5 108.8 144.8 REMARK 620 5 HOH B 703 O 164.1 124.2 78.0 107.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE B 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-418834 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (20-392) WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 4KH9 A 20 392 UNP Q5ZWX8 Q5ZWX8_LEGPH 20 392 DBREF 4KH9 B 20 392 UNP Q5ZWX8 Q5ZWX8_LEGPH 20 392 SEQADV 4KH9 GLY A 0 UNP Q5ZWX8 EXPRESSION TAG SEQADV 4KH9 GLY B 0 UNP Q5ZWX8 EXPRESSION TAG SEQRES 1 A 374 GLY PHE THR LEU PRO ARG GLN PRO THR LYS ALA TYR GLU SEQRES 2 A 374 CYS GLU ASN CYS SER GLN LEU SER ARG GLU ASN LEU HIS SEQRES 3 A 374 ASP LYS TRP GLU ILE THR ASN GLU PRO LEU ASN ASN ASN SEQRES 4 A 374 ILE SER ASN VAL ARG ARG SER TYR GLY TYR LYS GLU ARG SEQRES 5 A 374 ILE SER LEU GLU GLN LEU GLN ARG GLY VAL ILE ILE SER SEQRES 6 A 374 THR LEU ALA PRO GLY ALA VAL VAL ARG ILE THR PRO LEU SEQRES 7 A 374 GLN ASN LYS SER ILE PRO GLU LEU LEU ILE LYS THR PRO SEQRES 8 A 374 LYS ASN GLN LEU LEU PRO LEU LYS GLU ALA SER SER LEU SEQRES 9 A 374 TYR ASN GLN ASP ASP GLU VAL GLY ASN ASN PRO LEU ALA SEQRES 10 A 374 ILE THR LYS HIS GLN ALA MSE LEU GLN ILE LYS PRO GLU SEQRES 11 A 374 LEU GLY TYR GLY LYS PHE ILE LEU LYS SER LYS ASP ILE SEQRES 12 A 374 THR ASN LYS TYR ALA ASP ALA TYR MSE ILE SER VAL LEU SEQRES 13 A 374 ASP LYS PHE SER ILE THR TYR LEU GLU VAL GLU THR ASP SEQRES 14 A 374 SER LEU HIS TYR GLN TYR GLY ASP LYS LEU LYS ALA THR SEQRES 15 A 374 ILE SER LEU HIS ASN ASP ILE THR GLU TYR ASP VAL ASN SEQRES 16 A 374 ASP VAL ASP ALA ARG LEU VAL GLY PRO LYS GLY GLN VAL SEQRES 17 A 374 ILE SER LEU ASN LEU THR LYS LEU LYS SER ASN VAL PHE SEQRES 18 A 374 GLU GLY THR ALA THR LEU ASP SER GLU LEU ASN ASP ARG SEQRES 19 A 374 GLY GLU ASN TRP TYR LEU GLU THR ASP VAL GLN THR GLU SEQRES 20 A 374 TYR GLY GLN GLU ILE ILE ARG ARG SER GLY HIS THR ALA SEQRES 21 A 374 PHE SER TYR SER ILE PRO SER ALA SER LEU MSE ASN VAL SEQRES 22 A 374 LYS LYS LEU SER SER LYS PRO LEU THR PHE VAL VAL THR SEQRES 23 A 374 VAL ASP VAL ALA THR ALA SER ARG TYR ALA LEU GLN SER SEQRES 24 A 374 VAL LEU PHE GLN LYS ASN GLY LYS GLY GLU ALA ARG PRO SEQRES 25 A 374 ILE GLN THR SER GLN ARG ALA GLN TRP LEU GLU PRO GLY SEQRES 26 A 374 LYS HIS VAL LEU GLN PHE THR PHE ASP ASN HIS ASN GLN SEQRES 27 A 374 LEU SER ASP ASP ASN LEU TYR LEU GLY TYR LEU ARG LEU SEQRES 28 A 374 ILE ASP TYR GLY GLN LEU LYS THR VAL TYR GLN TYR ASN SEQRES 29 A 374 GLN PRO VAL LYS LEU SER GLN LEU VAL ASP SEQRES 1 B 374 GLY PHE THR LEU PRO ARG GLN PRO THR LYS ALA TYR GLU SEQRES 2 B 374 CYS GLU ASN CYS SER GLN LEU SER ARG GLU ASN LEU HIS SEQRES 3 B 374 ASP LYS TRP GLU ILE THR ASN GLU PRO LEU ASN ASN ASN SEQRES 4 B 374 ILE SER ASN VAL ARG ARG SER TYR GLY TYR LYS GLU ARG SEQRES 5 B 374 ILE SER LEU GLU GLN LEU GLN ARG GLY VAL ILE ILE SER SEQRES 6 B 374 THR LEU ALA PRO GLY ALA VAL VAL ARG ILE THR PRO LEU SEQRES 7 B 374 GLN ASN LYS SER ILE PRO GLU LEU LEU ILE LYS THR PRO SEQRES 8 B 374 LYS ASN GLN LEU LEU PRO LEU LYS GLU ALA SER SER LEU SEQRES 9 B 374 TYR ASN GLN ASP ASP GLU VAL GLY ASN ASN PRO LEU ALA SEQRES 10 B 374 ILE THR LYS HIS GLN ALA MSE LEU GLN ILE LYS PRO GLU SEQRES 11 B 374 LEU GLY TYR GLY LYS PHE ILE LEU LYS SER LYS ASP ILE SEQRES 12 B 374 THR ASN LYS TYR ALA ASP ALA TYR MSE ILE SER VAL LEU SEQRES 13 B 374 ASP LYS PHE SER ILE THR TYR LEU GLU VAL GLU THR ASP SEQRES 14 B 374 SER LEU HIS TYR GLN TYR GLY ASP LYS LEU LYS ALA THR SEQRES 15 B 374 ILE SER LEU HIS ASN ASP ILE THR GLU TYR ASP VAL ASN SEQRES 16 B 374 ASP VAL ASP ALA ARG LEU VAL GLY PRO LYS GLY GLN VAL SEQRES 17 B 374 ILE SER LEU ASN LEU THR LYS LEU LYS SER ASN VAL PHE SEQRES 18 B 374 GLU GLY THR ALA THR LEU ASP SER GLU LEU ASN ASP ARG SEQRES 19 B 374 GLY GLU ASN TRP TYR LEU GLU THR ASP VAL GLN THR GLU SEQRES 20 B 374 TYR GLY GLN GLU ILE ILE ARG ARG SER GLY HIS THR ALA SEQRES 21 B 374 PHE SER TYR SER ILE PRO SER ALA SER LEU MSE ASN VAL SEQRES 22 B 374 LYS LYS LEU SER SER LYS PRO LEU THR PHE VAL VAL THR SEQRES 23 B 374 VAL ASP VAL ALA THR ALA SER ARG TYR ALA LEU GLN SER SEQRES 24 B 374 VAL LEU PHE GLN LYS ASN GLY LYS GLY GLU ALA ARG PRO SEQRES 25 B 374 ILE GLN THR SER GLN ARG ALA GLN TRP LEU GLU PRO GLY SEQRES 26 B 374 LYS HIS VAL LEU GLN PHE THR PHE ASP ASN HIS ASN GLN SEQRES 27 B 374 LEU SER ASP ASP ASN LEU TYR LEU GLY TYR LEU ARG LEU SEQRES 28 B 374 ILE ASP TYR GLY GLN LEU LYS THR VAL TYR GLN TYR ASN SEQRES 29 B 374 GLN PRO VAL LYS LEU SER GLN LEU VAL ASP MODRES 4KH9 MSE A 142 MET SELENOMETHIONINE MODRES 4KH9 MSE A 170 MET SELENOMETHIONINE MODRES 4KH9 MSE A 289 MET SELENOMETHIONINE MODRES 4KH9 MSE B 142 MET SELENOMETHIONINE MODRES 4KH9 MSE B 170 MET SELENOMETHIONINE MODRES 4KH9 MSE B 289 MET SELENOMETHIONINE HET MSE A 142 8 HET MSE A 170 13 HET MSE A 289 8 HET MSE B 142 8 HET MSE B 170 8 HET MSE B 289 8 HET CA A 401 1 HET CA B 501 1 HET CA B 502 1 HET PEG B 503 7 HET 1PE B 504 16 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 CA 3(CA 2+) FORMUL 6 PEG C4 H10 O3 FORMUL 7 1PE C10 H22 O6 FORMUL 8 HOH *242(H2 O) HELIX 1 1 ASN A 34 LEU A 38 5 5 HELIX 2 2 LEU A 73 GLY A 79 1 7 HELIX 3 3 LYS A 117 SER A 120 5 4 HELIX 4 4 SER A 121 ASP A 126 1 6 HELIX 5 5 LYS A 146 GLY A 150 5 5 HELIX 6 6 SER A 358 ASN A 361 5 4 HELIX 7 7 SER A 388 LEU A 390 5 3 HELIX 8 8 ASN B 34 LEU B 38 5 5 HELIX 9 9 LEU B 73 GLY B 79 1 7 HELIX 10 10 LYS B 117 SER B 120 5 4 HELIX 11 11 SER B 121 ASP B 126 1 6 HELIX 12 12 LYS B 146 GLY B 150 5 5 HELIX 13 13 SER B 358 ASP B 360 5 3 SHEET 1 A 4 PHE A 20 THR A 21 0 SHEET 2 A 4 ALA A 286 SER A 295 -1 O VAL A 291 N PHE A 20 SHEET 3 A 4 LEU A 299 VAL A 307 -1 O THR A 300 N LEU A 294 SHEET 4 A 4 GLY A 343 PHE A 351 -1 O LEU A 347 N VAL A 303 SHEET 1 B 5 LEU A 43 TRP A 47 0 SHEET 2 B 5 ARG A 329 LEU A 340 -1 O GLN A 335 N ASP A 45 SHEET 3 B 5 SER A 311 GLN A 321 -1 N LEU A 319 O ILE A 331 SHEET 4 B 5 TYR A 363 ASP A 371 -1 O ARG A 368 N GLN A 316 SHEET 5 B 5 LYS A 376 TYR A 381 -1 O TYR A 379 N LEU A 369 SHEET 1 C 5 LEU A 43 TRP A 47 0 SHEET 2 C 5 ARG A 329 LEU A 340 -1 O GLN A 335 N ASP A 45 SHEET 3 C 5 SER A 311 GLN A 321 -1 N LEU A 319 O ILE A 331 SHEET 4 C 5 TYR A 363 ASP A 371 -1 O ARG A 368 N GLN A 316 SHEET 5 C 5 VAL A 385 LYS A 386 -1 O VAL A 385 N LEU A 364 SHEET 1 D 5 ARG A 62 SER A 64 0 SHEET 2 D 5 TYR A 181 THR A 186 -1 O LEU A 182 N SER A 64 SHEET 3 D 5 LYS A 196 HIS A 204 -1 O SER A 202 N GLU A 183 SHEET 4 D 5 VAL A 238 THR A 244 -1 O ALA A 243 N LEU A 197 SHEET 5 D 5 ASN A 230 LYS A 235 -1 N ASN A 230 O THR A 242 SHEET 1 E 4 GLY A 66 SER A 72 0 SHEET 2 E 4 ALA A 168 LEU A 174 -1 O ILE A 171 N GLU A 69 SHEET 3 E 4 VAL A 90 PRO A 95 -1 N VAL A 90 O LEU A 174 SHEET 4 E 4 ALA A 141 GLN A 144 -1 O ALA A 141 N ILE A 93 SHEET 1 F 4 VAL A 80 SER A 83 0 SHEET 2 F 4 LYS A 153 SER A 158 -1 O PHE A 154 N ILE A 82 SHEET 3 F 4 LEU A 104 LYS A 107 -1 N LEU A 105 O LYS A 157 SHEET 4 F 4 LEU A 113 PRO A 115 -1 O LEU A 114 N ILE A 106 SHEET 1 G 5 HIS A 190 GLN A 192 0 SHEET 2 G 5 GLU A 269 SER A 282 1 O SER A 280 N TYR A 191 SHEET 3 G 5 TRP A 256 TYR A 266 -1 N VAL A 262 O ARG A 273 SHEET 4 G 5 ASP A 214 VAL A 220 -1 N ARG A 218 O GLU A 259 SHEET 5 G 5 VAL A 226 SER A 228 -1 O ILE A 227 N LEU A 219 SHEET 1 H 4 PHE B 20 THR B 21 0 SHEET 2 H 4 ALA B 286 SER B 295 -1 O VAL B 291 N PHE B 20 SHEET 3 H 4 LEU B 299 VAL B 307 -1 O THR B 300 N LEU B 294 SHEET 4 H 4 GLY B 343 PHE B 351 -1 O LEU B 347 N VAL B 303 SHEET 1 I 5 LEU B 43 GLU B 48 0 SHEET 2 I 5 ALA B 328 LEU B 340 -1 O GLN B 335 N ASP B 45 SHEET 3 I 5 SER B 311 LYS B 322 -1 N LEU B 319 O ILE B 331 SHEET 4 I 5 LEU B 362 ASP B 371 -1 O ARG B 368 N GLN B 316 SHEET 5 I 5 LYS B 376 TYR B 381 -1 O VAL B 378 N LEU B 369 SHEET 1 J 5 LEU B 43 GLU B 48 0 SHEET 2 J 5 ALA B 328 LEU B 340 -1 O GLN B 335 N ASP B 45 SHEET 3 J 5 SER B 311 LYS B 322 -1 N LEU B 319 O ILE B 331 SHEET 4 J 5 LEU B 362 ASP B 371 -1 O ARG B 368 N GLN B 316 SHEET 5 J 5 VAL B 385 LYS B 386 -1 O VAL B 385 N LEU B 364 SHEET 1 K 5 VAL B 61 SER B 64 0 SHEET 2 K 5 TYR B 181 THR B 186 -1 O VAL B 184 N ARG B 62 SHEET 3 K 5 LYS B 196 HIS B 204 -1 O SER B 202 N GLU B 183 SHEET 4 K 5 VAL B 238 THR B 244 -1 O ALA B 243 N LEU B 197 SHEET 5 K 5 ASN B 230 LYS B 235 -1 N ASN B 230 O THR B 242 SHEET 1 L 4 GLY B 66 SER B 72 0 SHEET 2 L 4 ALA B 168 LEU B 174 -1 O VAL B 173 N TYR B 67 SHEET 3 L 4 VAL B 90 PRO B 95 -1 N VAL B 90 O LEU B 174 SHEET 4 L 4 ALA B 141 GLN B 144 -1 O ALA B 141 N ILE B 93 SHEET 1 M 4 VAL B 80 SER B 83 0 SHEET 2 M 4 LYS B 153 SER B 158 -1 O PHE B 154 N ILE B 82 SHEET 3 M 4 LEU B 104 LYS B 107 -1 N LEU B 105 O LYS B 157 SHEET 4 M 4 LEU B 113 PRO B 115 -1 O LEU B 114 N ILE B 106 SHEET 1 N 5 HIS B 190 GLN B 192 0 SHEET 2 N 5 GLU B 269 SER B 282 1 O SER B 280 N TYR B 191 SHEET 3 N 5 TRP B 256 TYR B 266 -1 N LEU B 258 O THR B 277 SHEET 4 N 5 ASP B 214 VAL B 220 -1 N ARG B 218 O GLU B 259 SHEET 5 N 5 VAL B 226 SER B 228 -1 O ILE B 227 N LEU B 219 SSBOND 1 CYS A 32 CYS A 35 1555 1555 2.64 SSBOND 2 CYS B 32 CYS B 35 1555 1555 2.64 LINK C ALA A 141 N MSE A 142 1555 1555 1.34 LINK C MSE A 142 N LEU A 143 1555 1555 1.33 LINK C TYR A 169 N MSE A 170 1555 1555 1.33 LINK C MSE A 170 N ILE A 171 1555 1555 1.33 LINK C LEU A 288 N MSE A 289 1555 1555 1.35 LINK C MSE A 289 N ASN A 290 1555 1555 1.33 LINK C ALA B 141 N MSE B 142 1555 1555 1.33 LINK C MSE B 142 N LEU B 143 1555 1555 1.33 LINK C TYR B 169 N MSE B 170 1555 1555 1.33 LINK C MSE B 170 N ILE B 171 1555 1555 1.33 LINK C LEU B 288 N MSE B 289 1555 1555 1.34 LINK C MSE B 289 N ASN B 290 1555 1555 1.34 LINK OD2 ASP A 214 CA CA A 401 1555 1555 2.95 LINK OD1 ASP A 214 CA CA A 401 1555 1555 3.14 LINK CA CA A 401 O HOH A 533 1555 1555 2.30 LINK CA CA A 401 O HOH B 693 1555 1555 2.87 LINK OD1 ASP B 45 CA CA B 501 1555 1555 2.50 LINK OD2 ASP B 45 CA CA B 501 1555 1555 2.56 LINK OD2 ASP B 214 CA CA B 502 1555 1555 2.59 LINK OD1 ASP B 214 CA CA B 502 1555 1555 2.71 LINK CA CA B 501 O HOH B 620 1555 1555 2.47 LINK CA CA B 501 O HOH B 697 1555 1555 2.45 LINK CA CA B 501 O HOH B 698 1555 1555 2.19 LINK CA CA B 501 O HOH B 720 1555 1555 2.44 LINK CA CA B 502 O HOH B 631 1555 1555 3.02 LINK CA CA B 502 O HOH B 702 1555 1555 2.69 LINK CA CA B 502 O HOH B 703 1555 1555 2.20 CISPEP 1 LYS A 297 PRO A 298 0 -1.45 CISPEP 2 LYS B 297 PRO B 298 0 -2.72 SITE 1 AC1 3 ASP A 214 HOH A 533 HOH B 693 SITE 1 AC2 6 LYS A 46 ASP B 45 HOH B 620 HOH B 697 SITE 2 AC2 6 HOH B 698 HOH B 720 SITE 1 AC3 4 ASP B 214 HOH B 631 HOH B 702 HOH B 703 SITE 1 AC4 4 ARG A 63 TYR A 181 LEU B 122 ASP B 126 SITE 1 AC5 12 TYR A 123 ARG B 62 SER B 64 TYR B 67 SITE 2 AC5 12 LYS B 68 SER B 172 VAL B 173 SER B 274 SITE 3 AC5 12 GLY B 275 HIS B 276 THR B 277 HOH B 603 CRYST1 53.807 62.975 70.632 64.13 82.94 67.17 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018585 -0.007824 0.001130 0.00000 SCALE2 0.000000 0.017229 -0.008087 0.00000 SCALE3 0.000000 0.000000 0.015759 0.00000