HEADER IMMUNE SYSTEM 01-MAY-13 4KHT TITLE TRIPLE HELIX BUNDLE OF GP41 COMPLEXED WITH FAB 8066 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GP41 HELIX; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 8066 HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 MOL_ID: 3; COMPND 9 MOLECULE: 8066 LIGHT CHAIN; COMPND 10 CHAIN: L SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS GP41 FAB IMMUNE SYSTEM, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.LI,A.GUSTCHINA,A.WLODAWER REVDAT 2 15-NOV-17 4KHT 1 AUTHOR REMARK REVDAT 1 12-MAR-14 4KHT 0 JRNL AUTH E.GUSTCHINA,M.LI,R.GHIRLANDO,P.SCHUCK,J.M.LOUIS,J.PIERSON, JRNL AUTH 2 P.RAO,S.SUBRAMANIAM,A.GUSTCHINA,G.M.CLORE,A.WLODAWER JRNL TITL COMPLEXES OF NEUTRALIZING AND NON-NEUTRALIZING AFFINITY JRNL TITL 2 MATURED FABS WITH A MIMETIC OF THE INTERNAL TRIMERIC JRNL TITL 3 COILED-COIL OF HIV-1 GP41. JRNL REF PLOS ONE V. 8 78187 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 24244293 JRNL DOI 10.1371/JOURNAL.PONE.0078187 REMARK 2 REMARK 2 RESOLUTION. 2.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 14212 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 716 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.5611 - 4.8137 1.00 3012 148 0.2116 0.2681 REMARK 3 2 4.8137 - 3.8223 1.00 2907 137 0.1857 0.2089 REMARK 3 3 3.8223 - 3.3395 1.00 2835 169 0.2154 0.2798 REMARK 3 4 3.3395 - 3.0344 0.98 2753 164 0.2627 0.3173 REMARK 3 5 3.0344 - 2.8170 0.70 1989 98 0.3213 0.4257 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 90.71 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -17.98220 REMARK 3 B22 (A**2) : -17.98220 REMARK 3 B33 (A**2) : 35.65950 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3774 REMARK 3 ANGLE : 1.337 5133 REMARK 3 CHIRALITY : 0.081 583 REMARK 3 PLANARITY : 0.007 659 REMARK 3 DIHEDRAL : 18.169 1352 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 2:26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.3389 24.3882 -41.0647 REMARK 3 T TENSOR REMARK 3 T11: 2.4864 T22: 2.9705 REMARK 3 T33: 0.6331 T12: 0.7102 REMARK 3 T13: 0.0107 T23: -0.4876 REMARK 3 L TENSOR REMARK 3 L11: 1.5608 L22: 0.1449 REMARK 3 L33: 1.8945 L12: -0.2639 REMARK 3 L13: 0.2144 L23: 0.3925 REMARK 3 S TENSOR REMARK 3 S11: 0.5717 S12: 1.5037 S13: -0.0376 REMARK 3 S21: 0.2570 S22: -1.3746 S23: 0.1379 REMARK 3 S31: 0.0444 S32: 0.2753 S33: -0.2769 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 27:67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.9462 29.2344 7.2308 REMARK 3 T TENSOR REMARK 3 T11: 0.8705 T22: 1.0041 REMARK 3 T33: 0.0466 T12: -0.1226 REMARK 3 T13: -0.0482 T23: 0.1045 REMARK 3 L TENSOR REMARK 3 L11: 1.6855 L22: 1.0801 REMARK 3 L33: 6.0823 L12: -0.4650 REMARK 3 L13: -1.3438 L23: 0.0633 REMARK 3 S TENSOR REMARK 3 S11: -0.8532 S12: 0.4162 S13: -0.0220 REMARK 3 S21: -0.6430 S22: -0.4315 S23: 0.9431 REMARK 3 S31: -0.3400 S32: -0.5399 S33: -0.0177 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN H AND RESID 3:119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.6838 26.5027 28.1294 REMARK 3 T TENSOR REMARK 3 T11: 0.3934 T22: 0.4609 REMARK 3 T33: 0.3503 T12: -0.0027 REMARK 3 T13: 0.0819 T23: -0.0344 REMARK 3 L TENSOR REMARK 3 L11: 7.1877 L22: 5.3541 REMARK 3 L33: 3.0979 L12: 0.8770 REMARK 3 L13: -0.3228 L23: -0.8270 REMARK 3 S TENSOR REMARK 3 S11: 0.1410 S12: -0.5868 S13: -0.4996 REMARK 3 S21: 0.1398 S22: -0.0527 S23: 0.7167 REMARK 3 S31: -0.1028 S32: 0.2389 S33: -0.0741 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN H AND RESID 143:220 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6809 17.1143 24.8663 REMARK 3 T TENSOR REMARK 3 T11: 1.0451 T22: 1.3618 REMARK 3 T33: 1.9533 T12: -0.1823 REMARK 3 T13: -0.1884 T23: 0.0290 REMARK 3 L TENSOR REMARK 3 L11: 3.2008 L22: 2.1463 REMARK 3 L33: 2.4349 L12: 0.6683 REMARK 3 L13: 0.9693 L23: 0.0229 REMARK 3 S TENSOR REMARK 3 S11: 0.3558 S12: 0.8285 S13: -0.3128 REMARK 3 S21: -0.4110 S22: 0.5825 S23: 1.9182 REMARK 3 S31: 0.6859 S32: -0.6841 S33: -0.5142 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN L AND RESID 2:109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.6969 44.5780 17.8718 REMARK 3 T TENSOR REMARK 3 T11: 0.7479 T22: 0.7370 REMARK 3 T33: 1.4545 T12: 0.1001 REMARK 3 T13: -0.0372 T23: 0.2450 REMARK 3 L TENSOR REMARK 3 L11: 3.8267 L22: 3.5010 REMARK 3 L33: 2.9100 L12: -2.3588 REMARK 3 L13: -1.1178 L23: -1.3662 REMARK 3 S TENSOR REMARK 3 S11: 0.0229 S12: 0.7608 S13: 1.8258 REMARK 3 S21: -0.4027 S22: 0.2704 S23: 1.4966 REMARK 3 S31: -0.7380 S32: -0.4137 S33: -0.2300 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN L AND RESID 110:210 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3493 28.7757 28.6333 REMARK 3 T TENSOR REMARK 3 T11: -0.1776 T22: 1.6684 REMARK 3 T33: 3.1486 T12: -0.1100 REMARK 3 T13: 0.1594 T23: 0.8269 REMARK 3 L TENSOR REMARK 3 L11: 0.9013 L22: 0.7752 REMARK 3 L33: 0.8770 L12: -0.6568 REMARK 3 L13: -0.2733 L23: -0.2083 REMARK 3 S TENSOR REMARK 3 S11: -0.4786 S12: 0.2801 S13: 0.1254 REMARK 3 S21: 0.2134 S22: 0.2489 S23: 1.5473 REMARK 3 S31: 0.3918 S32: -1.5668 S33: -0.2181 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KHT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079356. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14235 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 23.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 62.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.32800 REMARK 200 FOR SHELL : 2.080 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG4K, 20%ISOPROPRANOL, PH 5.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: NONAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 65160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -188.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 104.41600 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 52.20800 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 90.42691 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 GLN H 1 REMARK 465 VAL H 2 REMARK 465 SER H 135 REMARK 465 LYS H 136 REMARK 465 SER H 137 REMARK 465 THR H 138 REMARK 465 SER H 139 REMARK 465 LYS H 221 REMARK 465 SER H 222 REMARK 465 GLU H 223 REMARK 465 PHE H 224 REMARK 465 GLU H 225 REMARK 465 GLN H 226 REMARK 465 LYS H 227 REMARK 465 LEU H 228 REMARK 465 ILE H 229 REMARK 465 SER H 230 REMARK 465 GLU H 231 REMARK 465 GLU H 232 REMARK 465 ASP H 233 REMARK 465 LEU H 234 REMARK 465 ASN H 235 REMARK 465 GLY H 236 REMARK 465 ALA H 237 REMARK 465 PRO H 238 REMARK 465 HIS H 239 REMARK 465 HIS H 240 REMARK 465 HIS H 241 REMARK 465 HIS H 242 REMARK 465 HIS H 243 REMARK 465 HIS H 244 REMARK 465 ASP L 1 REMARK 465 THR L 211 REMARK 465 GLU L 212 REMARK 465 ALA L 213 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER H 120 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO L 7 OG1 THR L 103 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO H 52A C - N - CA ANGL. DEV. = 9.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 3 -178.14 -62.96 REMARK 500 ALA A 12 -70.58 -161.89 REMARK 500 ILE A 13 51.98 -91.23 REMARK 500 LYS A 21 28.69 -70.69 REMARK 500 LYS A 22 -20.61 -160.51 REMARK 500 GLU A 28 -6.59 -50.73 REMARK 500 SER H 84 70.41 45.53 REMARK 500 VAL H 118 76.73 -108.92 REMARK 500 ALA H 121 155.82 58.09 REMARK 500 ASP H 151 88.57 -1.29 REMARK 500 PRO H 154 -152.11 -113.77 REMARK 500 PRO H 156 -164.47 -103.73 REMARK 500 SER H 163 14.37 56.21 REMARK 500 ALA H 165 -88.65 -65.16 REMARK 500 THR H 167 -43.32 -133.24 REMARK 500 SER H 194 54.42 -93.95 REMARK 500 SER H 195 22.02 -174.76 REMARK 500 LEU H 196 -96.81 -61.09 REMARK 500 THR H 198 -54.23 -137.79 REMARK 500 ASP L 25 -41.71 -151.43 REMARK 500 ILE L 27 157.99 53.44 REMARK 500 PRO L 28 -94.25 -94.83 REMARK 500 SER L 66 81.19 -172.68 REMARK 500 MET L 93 -80.87 -61.44 REMARK 500 VAL L 95 27.66 42.81 REMARK 500 PRO L 111 102.03 -37.90 REMARK 500 ALA L 129 48.23 -100.08 REMARK 500 ALA L 132 74.72 -168.14 REMARK 500 LEU L 137 76.67 -119.67 REMARK 500 ASP L 153 -65.36 55.46 REMARK 500 SER L 154 -20.09 -159.21 REMARK 500 LYS L 158 -44.59 -145.44 REMARK 500 ASN L 172 -11.46 62.85 REMARK 500 PRO L 184 44.68 -67.00 REMARK 500 GLU L 185 -32.78 -154.53 REMARK 500 SER L 189 -49.74 -140.79 REMARK 500 ARG L 191 -119.10 -70.92 REMARK 500 CYS L 195 82.56 -173.64 REMARK 500 HIS L 199 62.93 -117.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MA9 RELATED DB: PDB REMARK 900 DIFFERENT HELIX BUNDLE REMARK 900 RELATED ID: 4KHX RELATED DB: PDB DBREF 4KHT A 1 67 PDB 4KHT 4KHT 1 67 DBREF 4KHT H 1 244 PDB 4KHT 4KHT 1 244 DBREF 4KHT L 1 213 PDB 4KHT 4KHT 1 213 SEQRES 1 A 67 GLY CYS CYS GLY GLY ILE LYS LYS GLU ILE GLU ALA ILE SEQRES 2 A 67 LYS LYS GLU GLN GLU ALA ILE LYS LYS LYS ILE GLU ALA SEQRES 3 A 67 ILE GLU LYS GLU LEU SER GLY ILE VAL GLN GLN GLN ASN SEQRES 4 A 67 ASN LEU LEU ARG ALA ILE GLU ALA GLN GLN HIS LEU LEU SEQRES 5 A 67 GLN LEU THR VAL TRP GLY ILE LYS GLN LEU GLN ALA ARG SEQRES 6 A 67 ILE LEU SEQRES 1 H 245 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 245 PRO GLY SER SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 245 GLY THR PHE ASN SER TYR ALA PHE SER TRP VAL ARG GLN SEQRES 4 H 245 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY SER ILE ILE SEQRES 5 H 245 PRO ILE PHE GLY THR THR ASN TYR ALA GLN LYS PHE GLN SEQRES 6 H 245 GLY ARG VAL THR ILE THR ALA ASP GLU SER THR SER THR SEQRES 7 H 245 ALA TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 H 245 ALA VAL TYR TYR CYS ALA ARG TYR PHE ASP THR TYR ASN SEQRES 9 H 245 ASN TYR GLY PHE ALA ASN TRP GLY GLN GLY THR LEU VAL SEQRES 10 H 245 THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE SEQRES 11 H 245 PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR SEQRES 12 H 245 ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU SEQRES 13 H 245 PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER SEQRES 14 H 245 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY SEQRES 15 H 245 LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SEQRES 16 H 245 SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS SEQRES 17 H 245 LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO SEQRES 18 H 245 LYS SER GLU PHE GLU GLN LYS LEU ILE SER GLU GLU ASP SEQRES 19 H 245 LEU ASN GLY ALA PRO HIS HIS HIS HIS HIS HIS SEQRES 1 L 213 ASP ILE GLU LEU THR GLN PRO PRO SER VAL SER VAL VAL SEQRES 2 L 213 PRO GLY GLN THR ALA ARG ILE SER CYS SER GLY ASP ASN SEQRES 3 L 213 ILE PRO TYR GLU TYR ALA SER TRP TYR GLN GLN LYS PRO SEQRES 4 L 213 GLY GLN ALA PRO VAL LEU VAL ILE TYR GLY ASP ASN ASN SEQRES 5 L 213 ARG PRO SER GLY ILE PRO GLU ARG PHE SER GLY SER ASN SEQRES 6 L 213 SER GLY ASN THR ALA THR LEU THR ILE SER GLY THR GLN SEQRES 7 L 213 ALA GLU ASP GLU ALA ASP TYR TYR CYS ALA SER TRP ASP SEQRES 8 L 213 SER MET THR VAL ASP GLY VAL PHE GLY GLY GLY THR LYS SEQRES 9 L 213 LEU THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SER VAL SEQRES 10 L 213 THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN ALA ASN SEQRES 11 L 213 LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE TYR PRO SEQRES 12 L 213 GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SER PRO SEQRES 13 L 213 VAL LYS ALA GLY VAL GLU THR THR THR PRO SER LYS GLN SEQRES 14 L 213 SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SER LEU SEQRES 15 L 213 THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SER CYS SEQRES 16 L 213 GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS THR VAL SEQRES 17 L 213 ALA PRO THR GLU ALA HELIX 1 1 GLY A 5 ILE A 10 1 6 HELIX 2 2 ALA A 26 ILE A 66 1 41 HELIX 3 3 THR H 28 TYR H 32 5 5 HELIX 4 4 GLN H 61 GLN H 64 5 4 HELIX 5 5 ARG H 86 THR H 90 5 5 HELIX 6 6 SER H 163 ALA H 165 5 3 HELIX 7 7 LYS H 208 ASN H 211 5 4 HELIX 8 8 SER L 123 ALA L 129 1 7 SHEET 1 A 4 LEU H 4 GLN H 6 0 SHEET 2 A 4 VAL H 18 ALA H 24 -1 O LYS H 23 N VAL H 5 SHEET 3 A 4 THR H 77 LEU H 82 -1 O ALA H 78 N CYS H 22 SHEET 4 A 4 VAL H 67 ASP H 72 -1 N THR H 70 O TYR H 79 SHEET 1 B 6 GLU H 10 VAL H 11 0 SHEET 2 B 6 THR H 114 THR H 117 1 O LEU H 115 N GLU H 10 SHEET 3 B 6 ALA H 91 TYR H 98 -1 N ALA H 91 O VAL H 116 SHEET 4 B 6 ALA H 33 GLN H 39 -1 N VAL H 37 O TYR H 94 SHEET 5 B 6 LEU H 45 ILE H 51 -1 O MET H 48 N TRP H 36 SHEET 6 B 6 THR H 57 TYR H 59 -1 O ASN H 58 N SER H 50 SHEET 1 C 4 GLU H 10 VAL H 11 0 SHEET 2 C 4 THR H 114 THR H 117 1 O LEU H 115 N GLU H 10 SHEET 3 C 4 ALA H 91 TYR H 98 -1 N ALA H 91 O VAL H 116 SHEET 4 C 4 ASN H 109 TRP H 110 -1 O ASN H 109 N ARG H 97 SHEET 1 D 4 SER H 127 PRO H 130 0 SHEET 2 D 4 ALA H 143 TYR H 152 -1 O LEU H 148 N PHE H 129 SHEET 3 D 4 TYR H 183 VAL H 191 -1 O VAL H 191 N ALA H 143 SHEET 4 D 4 VAL H 170 LEU H 177 -1 N PHE H 173 O SER H 186 SHEET 1 E 3 THR H 158 TRP H 161 0 SHEET 2 E 3 CYS H 203 HIS H 207 -1 O ASN H 204 N SER H 160 SHEET 3 E 3 THR H 212 VAL H 214 -1 O VAL H 214 N VAL H 205 SHEET 1 F 5 SER L 9 SER L 11 0 SHEET 2 F 5 THR L 103 THR L 106 1 O THR L 106 N VAL L 10 SHEET 3 F 5 ASP L 84 TRP L 90 -1 N TYR L 85 O THR L 103 SHEET 4 F 5 SER L 33 GLN L 37 -1 N SER L 33 O ALA L 88 SHEET 5 F 5 VAL L 44 TYR L 48 -1 O ILE L 47 N TRP L 34 SHEET 1 G 4 SER L 9 SER L 11 0 SHEET 2 G 4 THR L 103 THR L 106 1 O THR L 106 N VAL L 10 SHEET 3 G 4 ASP L 84 TRP L 90 -1 N TYR L 85 O THR L 103 SHEET 4 G 4 GLY L 97 PHE L 99 -1 O VAL L 98 N SER L 89 SHEET 1 H 3 ALA L 18 SER L 23 0 SHEET 2 H 3 THR L 69 ILE L 74 -1 O ALA L 70 N CYS L 22 SHEET 3 H 3 PHE L 61 SER L 66 -1 N SER L 64 O THR L 71 SHEET 1 I 4 LEU L 119 PHE L 120 0 SHEET 2 I 4 LEU L 134 CYS L 136 -1 O VAL L 135 N PHE L 120 SHEET 3 I 4 SER L 178 LEU L 180 -1 O SER L 178 N CYS L 136 SHEET 4 I 4 GLU L 162 THR L 163 -1 N GLU L 162 O TYR L 179 SHEET 1 J 2 SER L 139 PHE L 141 0 SHEET 2 J 2 TYR L 174 ALA L 175 -1 O TYR L 174 N PHE L 141 SHEET 1 K 4 SER L 155 PRO L 156 0 SHEET 2 K 4 THR L 147 ALA L 152 -1 O ALA L 152 N SER L 155 SHEET 3 K 4 TYR L 193 THR L 198 -1 O GLN L 196 N ALA L 149 SHEET 4 K 4 THR L 203 VAL L 204 -1 O VAL L 204 N VAL L 197 SSBOND 1 CYS A 2 CYS A 3 1555 2655 2.03 SSBOND 2 CYS H 22 CYS H 95 1555 1555 2.06 SSBOND 3 CYS H 147 CYS H 203 1555 1555 2.03 SSBOND 4 CYS L 22 CYS L 87 1555 1555 2.07 SSBOND 5 CYS L 136 CYS L 195 1555 1555 2.04 CISPEP 1 ALA H 121 SER H 122 0 -11.25 CISPEP 2 PHE H 153 PRO H 154 0 3.06 CISPEP 3 GLU H 155 PRO H 156 0 -4.80 CISPEP 4 GLY L 24 ASP L 25 0 -8.22 CISPEP 5 PRO L 28 TYR L 29 0 -1.42 CISPEP 6 GLY L 109 GLN L 110 0 -1.77 CISPEP 7 TYR L 142 PRO L 143 0 -2.65 CRYST1 104.416 104.416 97.127 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009577 0.005529 0.000000 0.00000 SCALE2 0.000000 0.011059 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010296 0.00000