HEADER TRANSFERASE/DNA 01-MAY-13 4KHW TITLE TERNARY COMPLEX OF RB69 MUTANT L415F WITH RIBONUCLEOTIDE AT -2 TITLE 2 POSITION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GP43; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA/RNA (5'-D(*AP*CP*AP*G)-R(P*G)- COMPND 10 D(P*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'); COMPND 11 CHAIN: T; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*CP*C)-3'); COMPND 15 CHAIN: P; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE RB69; SOURCE 3 ORGANISM_TAXID: 12353; SOURCE 4 GENE: 43; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES KEYWDS RIBONUCLEOTIDE, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.R.CLAUSEN,L.C.PEDERSEN REVDAT 3 28-FEB-24 4KHW 1 REMARK SEQADV LINK REVDAT 2 30-OCT-13 4KHW 1 JRNL REVDAT 1 09-OCT-13 4KHW 0 JRNL AUTH A.R.CLAUSEN,M.S.MURRAY,A.R.PASSER,L.C.PEDERSEN,T.A.KUNKEL JRNL TITL STRUCTURE-FUNCTION ANALYSIS OF RIBONUCLEOTIDE BYPASS BY B JRNL TITL 2 FAMILY DNA REPLICASES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 16802 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 24082122 JRNL DOI 10.1073/PNAS.1309119110 REMARK 2 REMARK 2 RESOLUTION. 2.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : LS_WUNIT_K1 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 44309 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 2413 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.6497 - 6.0923 0.99 2988 131 0.1539 0.1939 REMARK 3 2 6.0923 - 4.8375 1.00 2813 166 0.1327 0.1877 REMARK 3 3 4.8375 - 4.2266 1.00 2801 140 0.1157 0.1689 REMARK 3 4 4.2266 - 3.8404 1.00 2765 147 0.1290 0.1709 REMARK 3 5 3.8404 - 3.5652 0.99 2783 158 0.1505 0.2132 REMARK 3 6 3.5652 - 3.3551 0.99 2736 142 0.1576 0.2417 REMARK 3 7 3.3551 - 3.1871 0.99 2710 152 0.1779 0.2107 REMARK 3 8 3.1871 - 3.0484 0.99 2767 117 0.1950 0.2732 REMARK 3 9 3.0484 - 2.9311 0.99 2713 143 0.2099 0.2949 REMARK 3 10 2.9311 - 2.8300 0.99 2740 135 0.2165 0.2478 REMARK 3 11 2.8300 - 2.7415 0.99 2713 146 0.2248 0.2634 REMARK 3 12 2.7415 - 2.6631 0.99 2692 149 0.2400 0.3098 REMARK 3 13 2.6631 - 2.5930 0.99 2691 159 0.2371 0.2730 REMARK 3 14 2.5930 - 2.5298 0.98 2669 158 0.2464 0.2826 REMARK 3 15 2.5298 - 2.4723 0.98 2680 124 0.2588 0.3306 REMARK 3 16 2.4723 - 2.4197 0.98 2665 139 0.2651 0.2770 REMARK 3 17 2.4197 - 2.3713 0.76 2108 107 0.2827 0.3483 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 1.00 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.81060 REMARK 3 B22 (A**2) : -4.81290 REMARK 3 B33 (A**2) : 4.00230 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 8266 REMARK 3 ANGLE : 0.764 11381 REMARK 3 CHIRALITY : 0.052 1206 REMARK 3 PLANARITY : 0.003 1353 REMARK 3 DIHEDRAL : 11.451 2763 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:98) REMARK 3 ORIGIN FOR THE GROUP (A): 28.5979 63.0515 33.4564 REMARK 3 T TENSOR REMARK 3 T11: 0.2333 T22: 0.3125 REMARK 3 T33: 0.5861 T12: -0.0142 REMARK 3 T13: 0.0007 T23: 0.0740 REMARK 3 L TENSOR REMARK 3 L11: 0.4045 L22: 2.8687 REMARK 3 L33: 1.1440 L12: 0.4896 REMARK 3 L13: -0.2776 L23: -0.9132 REMARK 3 S TENSOR REMARK 3 S11: 0.0813 S12: 0.0127 S13: 0.0392 REMARK 3 S21: 0.2432 S22: -0.1712 S23: -0.5838 REMARK 3 S31: -0.1468 S32: 0.1367 S33: 0.0916 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 99:197) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4061 30.7242 51.9510 REMARK 3 T TENSOR REMARK 3 T11: 0.2716 T22: 0.2594 REMARK 3 T33: 0.2547 T12: -0.0154 REMARK 3 T13: -0.0725 T23: 0.0235 REMARK 3 L TENSOR REMARK 3 L11: 1.1371 L22: 2.2585 REMARK 3 L33: 1.5406 L12: 0.1801 REMARK 3 L13: -0.2767 L23: -0.5989 REMARK 3 S TENSOR REMARK 3 S11: 0.0086 S12: -0.0453 S13: -0.0484 REMARK 3 S21: 0.3668 S22: -0.1886 S23: -0.2630 REMARK 3 S31: 0.1525 S32: -0.0698 S33: 0.0999 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 198:270) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5669 46.0948 52.9094 REMARK 3 T TENSOR REMARK 3 T11: 0.2662 T22: 0.2727 REMARK 3 T33: 0.2808 T12: -0.0411 REMARK 3 T13: -0.1042 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 0.8674 L22: 1.6593 REMARK 3 L33: 2.4467 L12: 0.8977 REMARK 3 L13: -0.3258 L23: 0.2363 REMARK 3 S TENSOR REMARK 3 S11: 0.2189 S12: -0.1853 S13: 0.1132 REMARK 3 S21: 0.3942 S22: -0.2432 S23: -0.3391 REMARK 3 S31: -0.2504 S32: -0.0217 S33: 0.0542 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 271:310) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1627 35.0127 39.1048 REMARK 3 T TENSOR REMARK 3 T11: 0.2519 T22: 0.3015 REMARK 3 T33: 0.2499 T12: 0.0096 REMARK 3 T13: -0.0024 T23: 0.0318 REMARK 3 L TENSOR REMARK 3 L11: 1.2902 L22: 0.6840 REMARK 3 L33: 1.6891 L12: -0.3913 REMARK 3 L13: 0.4779 L23: 0.7075 REMARK 3 S TENSOR REMARK 3 S11: 0.0634 S12: -0.0134 S13: -0.0105 REMARK 3 S21: 0.1504 S22: 0.0614 S23: 0.1557 REMARK 3 S31: 0.0932 S32: -0.5084 S33: -0.0378 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 311:416) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4491 46.0220 28.6433 REMARK 3 T TENSOR REMARK 3 T11: 0.1786 T22: 0.2265 REMARK 3 T33: 0.2136 T12: 0.0101 REMARK 3 T13: 0.0109 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 0.2537 L22: 1.1011 REMARK 3 L33: 0.6746 L12: 0.0662 REMARK 3 L13: 0.0218 L23: -0.1075 REMARK 3 S TENSOR REMARK 3 S11: 0.0124 S12: 0.0131 S13: 0.0701 REMARK 3 S21: -0.1885 S22: -0.0860 S23: -0.1678 REMARK 3 S31: 0.1167 S32: -0.0280 S33: 0.0302 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 417:541) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8932 42.4444 11.2923 REMARK 3 T TENSOR REMARK 3 T11: 0.4247 T22: 0.2910 REMARK 3 T33: 0.1875 T12: 0.0984 REMARK 3 T13: 0.1261 T23: 0.0222 REMARK 3 L TENSOR REMARK 3 L11: 1.0204 L22: 1.7191 REMARK 3 L33: 0.8638 L12: -0.0239 REMARK 3 L13: 0.2511 L23: -0.2303 REMARK 3 S TENSOR REMARK 3 S11: -0.0035 S12: 0.2465 S13: -0.0218 REMARK 3 S21: -0.3466 S22: -0.0346 S23: -0.2494 REMARK 3 S31: 0.3681 S32: 0.1684 S33: 0.0305 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 542:683) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6220 46.4519 6.6940 REMARK 3 T TENSOR REMARK 3 T11: 0.5168 T22: 0.3453 REMARK 3 T33: 0.1717 T12: 0.0137 REMARK 3 T13: 0.0210 T23: 0.0343 REMARK 3 L TENSOR REMARK 3 L11: 1.0674 L22: 1.7015 REMARK 3 L33: 0.6694 L12: 0.1296 REMARK 3 L13: -0.0559 L23: -0.2147 REMARK 3 S TENSOR REMARK 3 S11: -0.0580 S12: 0.3296 S13: 0.0464 REMARK 3 S21: -0.6420 S22: 0.0409 S23: 0.0237 REMARK 3 S31: 0.3364 S32: -0.0141 S33: -0.0107 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 684:724) REMARK 3 ORIGIN FOR THE GROUP (A): -10.1598 34.2559 10.6847 REMARK 3 T TENSOR REMARK 3 T11: 0.6321 T22: 0.3100 REMARK 3 T33: 0.2619 T12: -0.0139 REMARK 3 T13: -0.0273 T23: -0.0232 REMARK 3 L TENSOR REMARK 3 L11: 1.0480 L22: 1.1530 REMARK 3 L33: 0.8764 L12: -0.5388 REMARK 3 L13: -0.3133 L23: 0.2011 REMARK 3 S TENSOR REMARK 3 S11: 0.0023 S12: 0.3305 S13: -0.2109 REMARK 3 S21: -0.4660 S22: -0.1020 S23: 0.1350 REMARK 3 S31: 0.4026 S32: -0.0644 S33: 0.1078 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 725:870) REMARK 3 ORIGIN FOR THE GROUP (A): -19.9698 38.3335 38.7335 REMARK 3 T TENSOR REMARK 3 T11: 0.1775 T22: 0.2475 REMARK 3 T33: 0.2520 T12: -0.0082 REMARK 3 T13: 0.0090 T23: 0.0471 REMARK 3 L TENSOR REMARK 3 L11: 1.6289 L22: 1.8661 REMARK 3 L33: 2.0637 L12: -0.0546 REMARK 3 L13: 0.0399 L23: 0.1489 REMARK 3 S TENSOR REMARK 3 S11: -0.0259 S12: -0.3091 S13: -0.0767 REMARK 3 S21: 0.0743 S22: 0.0481 S23: 0.2748 REMARK 3 S31: 0.0551 S32: -0.1510 S33: -0.0396 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 871:902) REMARK 3 ORIGIN FOR THE GROUP (A): -32.5141 34.5353 19.8224 REMARK 3 T TENSOR REMARK 3 T11: 0.3697 T22: 0.4301 REMARK 3 T33: 0.4173 T12: -0.0476 REMARK 3 T13: -0.1020 T23: 0.0215 REMARK 3 L TENSOR REMARK 3 L11: 1.1196 L22: 0.8768 REMARK 3 L33: 0.2762 L12: 0.5335 REMARK 3 L13: -0.2992 L23: -0.1010 REMARK 3 S TENSOR REMARK 3 S11: -0.1481 S12: -0.0311 S13: -0.0676 REMARK 3 S21: -0.3975 S22: -0.1907 S23: 0.1354 REMARK 3 S31: -0.1064 S32: -0.1732 S33: 0.2909 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN P AND RESID 102:106) REMARK 3 ORIGIN FOR THE GROUP (A): -35.6621 57.5735 29.8310 REMARK 3 T TENSOR REMARK 3 T11: 0.4418 T22: 0.7538 REMARK 3 T33: 1.2140 T12: 0.0305 REMARK 3 T13: 0.1108 T23: 0.2064 REMARK 3 L TENSOR REMARK 3 L11: 3.3120 L22: 2.4772 REMARK 3 L33: 0.7554 L12: 0.5786 REMARK 3 L13: 0.2031 L23: 0.4888 REMARK 3 S TENSOR REMARK 3 S11: -0.5517 S12: 0.2949 S13: -0.3328 REMARK 3 S21: -0.3307 S22: 0.1207 S23: 0.5095 REMARK 3 S31: 0.9068 S32: -0.2937 S33: 0.1255 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN P AND RESID 107:110) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8582 59.8387 31.9958 REMARK 3 T TENSOR REMARK 3 T11: 0.2883 T22: 0.4239 REMARK 3 T33: 0.7385 T12: -0.0196 REMARK 3 T13: -0.0281 T23: 0.1201 REMARK 3 L TENSOR REMARK 3 L11: 5.2196 L22: 2.6128 REMARK 3 L33: 2.6915 L12: -2.0621 REMARK 3 L13: 2.3634 L23: -0.8412 REMARK 3 S TENSOR REMARK 3 S11: -0.4052 S12: 0.8156 S13: 1.0550 REMARK 3 S21: 0.3642 S22: 0.2984 S23: 0.0340 REMARK 3 S31: -0.5984 S32: -0.0399 S33: 0.0772 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN P AND RESID 111:115) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2174 48.2847 26.4601 REMARK 3 T TENSOR REMARK 3 T11: 0.2803 T22: 0.3505 REMARK 3 T33: 0.3009 T12: 0.0085 REMARK 3 T13: 0.0071 T23: 0.0221 REMARK 3 L TENSOR REMARK 3 L11: 0.8488 L22: 0.3566 REMARK 3 L33: 0.8709 L12: 0.2356 REMARK 3 L13: -0.6235 L23: -0.3870 REMARK 3 S TENSOR REMARK 3 S11: -0.0228 S12: 0.3598 S13: 0.0845 REMARK 3 S21: -0.0141 S22: 0.0540 S23: -0.0967 REMARK 3 S31: -0.0177 S32: -0.4137 S33: -0.0498 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN T AND RESID 1:8) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9802 56.7703 25.7539 REMARK 3 T TENSOR REMARK 3 T11: 0.1921 T22: 0.2910 REMARK 3 T33: 0.2398 T12: 0.0484 REMARK 3 T13: 0.0227 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 2.1031 L22: 2.3049 REMARK 3 L33: 0.8406 L12: -0.6721 REMARK 3 L13: -0.7221 L23: -0.8210 REMARK 3 S TENSOR REMARK 3 S11: -0.1493 S12: -0.4520 S13: 0.3636 REMARK 3 S21: -0.0088 S22: 0.0905 S23: 0.0621 REMARK 3 S31: -0.0464 S32: -0.1210 S33: -0.0159 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN T AND RESID 9:12) REMARK 3 ORIGIN FOR THE GROUP (A): -23.0443 51.2905 31.5379 REMARK 3 T TENSOR REMARK 3 T11: 0.2880 T22: 0.5189 REMARK 3 T33: 0.5202 T12: 0.0203 REMARK 3 T13: 0.0785 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 1.2650 L22: 0.7612 REMARK 3 L33: 2.1394 L12: -0.8925 REMARK 3 L13: -1.6018 L23: 0.9928 REMARK 3 S TENSOR REMARK 3 S11: -0.1007 S12: 0.1043 S13: 0.1647 REMARK 3 S21: 0.3195 S22: 0.0783 S23: 0.4945 REMARK 3 S31: 0.3622 S32: -0.5023 S33: -0.0397 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN T AND RESID 13:18) REMARK 3 ORIGIN FOR THE GROUP (A): -37.2108 63.8990 32.3277 REMARK 3 T TENSOR REMARK 3 T11: 0.3401 T22: 0.5047 REMARK 3 T33: 0.9354 T12: 0.1813 REMARK 3 T13: 0.0003 T23: 0.0951 REMARK 3 L TENSOR REMARK 3 L11: 2.3875 L22: -0.0040 REMARK 3 L33: 0.3291 L12: 0.0878 REMARK 3 L13: 0.9269 L23: 0.0519 REMARK 3 S TENSOR REMARK 3 S11: -0.9511 S12: 0.3735 S13: 0.8054 REMARK 3 S21: 0.2178 S22: 0.2215 S23: -0.0958 REMARK 3 S31: 0.0879 S32: 0.4817 S33: 0.1327 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KHW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079359. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44309 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.371 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.7_650 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS-HCL, 19% PEG350, 180 MM REMARK 280 CALCIUM CHLORIDE,, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.17750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.15500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.31500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.15500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.17750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.31500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -112.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 255 REMARK 465 MET A 256 REMARK 465 TYR A 257 REMARK 465 GLY A 258 REMARK 465 PHE A 903 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 32 CD OE1 OE2 REMARK 470 GLN A 45 OE1 NE2 REMARK 470 LYS A 48 NZ REMARK 470 ARG A 66 NE CZ NH1 NH2 REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 ASN A 98 CG OD1 ND2 REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 LYS A 130 CE NZ REMARK 470 LYS A 195 CD CE NZ REMARK 470 LYS A 251 CG CD CE NZ REMARK 470 VAL A 252 CG1 CG2 REMARK 470 ILE A 253 CG1 CG2 CD1 REMARK 470 GLU A 254 OE1 OE2 REMARK 470 LYS A 302 CG CD CE NZ REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 LYS A 311 CD CE NZ REMARK 470 GLU A 314 CG CD OE1 OE2 REMARK 470 LYS A 405 CE NZ REMARK 470 GLU A 528 CG CD OE1 OE2 REMARK 470 LYS A 529 CE NZ REMARK 470 LYS A 531 CD CE NZ REMARK 470 LYS A 536 CG CD CE NZ REMARK 470 GLU A 607 OE1 OE2 REMARK 470 THR A 611 OG1 CG2 REMARK 470 GLU A 612 CD OE1 OE2 REMARK 470 LYS A 635 CD CE NZ REMARK 470 SER A 639 OG REMARK 470 LYS A 640 CG CD CE NZ REMARK 470 LYS A 653 CG CD CE NZ REMARK 470 LYS A 696 CG CD CE NZ REMARK 470 LYS A 724 CD CE NZ REMARK 470 GLU A 758 CD OE1 OE2 REMARK 470 LYS A 765 CG CD CE NZ REMARK 470 LYS A 769 CE NZ REMARK 470 LYS A 800 CD CE NZ REMARK 470 LYS A 816 CD CE NZ REMARK 470 ILE A 819 CG1 CG2 CD1 REMARK 470 ASP A 820 CG OD1 OD2 REMARK 470 LYS A 878 CE NZ REMARK 470 LYS A 893 CE NZ REMARK 470 LYS A 894 CD CE NZ REMARK 470 ASP A 902 CG OD1 OD2 REMARK 470 DC P 115 O3' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 641 O HOH A 1342 2.16 REMARK 500 O HOH A 1216 O HOH A 1488 2.19 REMARK 500 O HOH A 1103 O HOH A 1402 2.19 REMARK 500 O HOH A 1451 O HOH A 1452 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA T 7 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC T 15 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DC P 103 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT P 112 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 121 52.82 -101.79 REMARK 500 PHE A 221 -70.71 -126.04 REMARK 500 LEU A 271 77.79 -118.02 REMARK 500 LEU A 303 97.43 -66.87 REMARK 500 ASP A 306 -70.86 -67.62 REMARK 500 LYS A 352 62.30 60.41 REMARK 500 PRO A 458 6.97 -65.17 REMARK 500 ASP A 579 107.33 -171.31 REMARK 500 ASP A 579 107.33 -171.31 REMARK 500 THR A 611 -179.19 -66.27 REMARK 500 THR A 622 -69.90 64.12 REMARK 500 ASP A 623 20.27 -141.00 REMARK 500 GLU A 686 -74.93 -109.36 REMARK 500 ALA A 785 76.89 -108.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1004 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 116 OE2 REMARK 620 2 GLU A 116 OE1 53.2 REMARK 620 3 HOH A1163 O 152.7 111.4 REMARK 620 4 HOH A1390 O 116.9 145.5 60.8 REMARK 620 5 HOH A1391 O 85.4 80.9 68.9 64.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1008 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 172 OE1 REMARK 620 2 GLU A 177 OE2 101.0 REMARK 620 3 HOH A1405 O 84.2 173.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1007 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 192 OD2 REMARK 620 2 ASP A 192 OD1 47.0 REMARK 620 3 GLU A 196 OE2 113.9 67.2 REMARK 620 4 GLU A 196 OE1 100.1 68.9 54.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1011 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 232 OD1 REMARK 620 2 HOH A1538 O 98.8 REMARK 620 3 HOH A1539 O 86.4 80.2 REMARK 620 4 HOH A1540 O 160.0 101.0 99.7 REMARK 620 5 HOH A1541 O 86.0 86.8 163.8 92.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 411 OD2 REMARK 620 2 ASP A 411 OD1 53.7 REMARK 620 3 LEU A 412 O 109.7 79.0 REMARK 620 4 ASP A 623 OD1 85.6 124.2 82.2 REMARK 620 5 TTP A1001 O2B 155.4 148.1 90.4 83.2 REMARK 620 6 TTP A1001 O2A 85.4 122.9 158.0 83.2 71.6 REMARK 620 7 TTP A1001 O1G 112.9 78.2 102.1 157.5 74.8 85.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 411 OD2 REMARK 620 2 ASP A 623 OD2 85.5 REMARK 620 3 TTP A1001 O2A 79.9 83.6 REMARK 620 4 HOH A1435 O 89.3 168.9 85.9 REMARK 620 5 HOH P 208 O 127.2 93.6 152.6 97.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1010 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 411 OD1 REMARK 620 2 GLU A 686 OE1 103.7 REMARK 620 3 HOH A1546 O 140.3 63.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1006 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 505 O REMARK 620 2 ASN A 507 OD1 100.4 REMARK 620 3 LYS A 531 O 155.7 63.0 REMARK 620 4 HOH A1387 O 67.4 75.3 120.2 REMARK 620 5 HOH A1388 O 87.2 113.4 84.1 154.4 REMARK 620 6 HOH A1389 O 128.5 128.8 73.4 107.5 86.1 REMARK 620 7 HOH A1455 O 73.1 61.2 83.0 112.9 58.5 139.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1005 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 660 OE1 REMARK 620 2 ASP A 684 OD2 88.7 REMARK 620 3 HOH A1339 O 95.6 91.3 REMARK 620 4 HOH A1454 O 173.1 94.6 78.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1009 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 721 O REMARK 620 2 HOH A1462 O 104.7 REMARK 620 3 HOH A1542 O 59.9 64.9 REMARK 620 4 HOH A1543 O 121.9 100.7 86.9 REMARK 620 5 HOH A1544 O 112.6 123.9 170.8 93.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TTP A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1011 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KHQ RELATED DB: PDB REMARK 900 RELATED ID: 4KHS RELATED DB: PDB REMARK 900 RELATED ID: 4KHU RELATED DB: PDB REMARK 900 RELATED ID: 4KHY RELATED DB: PDB REMARK 900 RELATED ID: 4KI4 RELATED DB: PDB REMARK 900 RELATED ID: 4KI6 RELATED DB: PDB DBREF 4KHW A 1 903 UNP Q38087 DPOL_BPR69 1 903 DBREF 4KHW T 1 18 PDB 4KHW 4KHW 1 18 DBREF 4KHW P 102 115 PDB 4KHW 4KHW 102 115 SEQADV 4KHW ALA A 222 UNP Q38087 ASP 222 ENGINEERED MUTATION SEQADV 4KHW ALA A 327 UNP Q38087 ASP 327 ENGINEERED MUTATION SEQADV 4KHW PHE A 415 UNP Q38087 LEU 415 ENGINEERED MUTATION SEQRES 1 A 903 MET LYS GLU PHE TYR LEU THR VAL GLU GLN ILE GLY ASP SEQRES 2 A 903 SER ILE PHE GLU ARG TYR ILE ASP SER ASN GLY ARG GLU SEQRES 3 A 903 ARG THR ARG GLU VAL GLU TYR LYS PRO SER LEU PHE ALA SEQRES 4 A 903 HIS CYS PRO GLU SER GLN ALA THR LYS TYR PHE ASP ILE SEQRES 5 A 903 TYR GLY LYS PRO CYS THR ARG LYS LEU PHE ALA ASN MET SEQRES 6 A 903 ARG ASP ALA SER GLN TRP ILE LYS ARG MET GLU ASP ILE SEQRES 7 A 903 GLY LEU GLU ALA LEU GLY MET ASP ASP PHE LYS LEU ALA SEQRES 8 A 903 TYR LEU SER ASP THR TYR ASN TYR GLU ILE LYS TYR ASP SEQRES 9 A 903 HIS THR LYS ILE ARG VAL ALA ASN PHE ASP ILE GLU VAL SEQRES 10 A 903 THR SER PRO ASP GLY PHE PRO GLU PRO SER GLN ALA LYS SEQRES 11 A 903 HIS PRO ILE ASP ALA ILE THR HIS TYR ASP SER ILE ASP SEQRES 12 A 903 ASP ARG PHE TYR VAL PHE ASP LEU LEU ASN SER PRO TYR SEQRES 13 A 903 GLY ASN VAL GLU GLU TRP SER ILE GLU ILE ALA ALA LYS SEQRES 14 A 903 LEU GLN GLU GLN GLY GLY ASP GLU VAL PRO SER GLU ILE SEQRES 15 A 903 ILE ASP LYS ILE ILE TYR MET PRO PHE ASP ASN GLU LYS SEQRES 16 A 903 GLU LEU LEU MET GLU TYR LEU ASN PHE TRP GLN GLN LYS SEQRES 17 A 903 THR PRO VAL ILE LEU THR GLY TRP ASN VAL GLU SER PHE SEQRES 18 A 903 ALA ILE PRO TYR VAL TYR ASN ARG ILE LYS ASN ILE PHE SEQRES 19 A 903 GLY GLU SER THR ALA LYS ARG LEU SER PRO HIS ARG LYS SEQRES 20 A 903 THR ARG VAL LYS VAL ILE GLU ASN MET TYR GLY SER ARG SEQRES 21 A 903 GLU ILE ILE THR LEU PHE GLY ILE SER VAL LEU ASP TYR SEQRES 22 A 903 ILE ASP LEU TYR LYS LYS PHE SER PHE THR ASN GLN PRO SEQRES 23 A 903 SER TYR SER LEU ASP TYR ILE SER GLU PHE GLU LEU ASN SEQRES 24 A 903 VAL GLY LYS LEU LYS TYR ASP GLY PRO ILE SER LYS LEU SEQRES 25 A 903 ARG GLU SER ASN HIS GLN ARG TYR ILE SER TYR ASN ILE SEQRES 26 A 903 ILE ALA VAL TYR ARG VAL LEU GLN ILE ASP ALA LYS ARG SEQRES 27 A 903 GLN PHE ILE ASN LEU SER LEU ASP MET GLY TYR TYR ALA SEQRES 28 A 903 LYS ILE GLN ILE GLN SER VAL PHE SER PRO ILE LYS THR SEQRES 29 A 903 TRP ASP ALA ILE ILE PHE ASN SER LEU LYS GLU GLN ASN SEQRES 30 A 903 LYS VAL ILE PRO GLN GLY ARG SER HIS PRO VAL GLN PRO SEQRES 31 A 903 TYR PRO GLY ALA PHE VAL LYS GLU PRO ILE PRO ASN ARG SEQRES 32 A 903 TYR LYS TYR VAL MET SER PHE ASP LEU THR SER PHE TYR SEQRES 33 A 903 PRO SER ILE ILE ARG GLN VAL ASN ILE SER PRO GLU THR SEQRES 34 A 903 ILE ALA GLY THR PHE LYS VAL ALA PRO LEU HIS ASP TYR SEQRES 35 A 903 ILE ASN ALA VAL ALA GLU ARG PRO SER ASP VAL TYR SER SEQRES 36 A 903 CYS SER PRO ASN GLY MET MET TYR TYR LYS ASP ARG ASP SEQRES 37 A 903 GLY VAL VAL PRO THR GLU ILE THR LYS VAL PHE ASN GLN SEQRES 38 A 903 ARG LYS GLU HIS LYS GLY TYR MET LEU ALA ALA GLN ARG SEQRES 39 A 903 ASN GLY GLU ILE ILE LYS GLU ALA LEU HIS ASN PRO ASN SEQRES 40 A 903 LEU SER VAL ASP GLU PRO LEU ASP VAL ASP TYR ARG PHE SEQRES 41 A 903 ASP PHE SER ASP GLU ILE LYS GLU LYS ILE LYS LYS LEU SEQRES 42 A 903 SER ALA LYS SER LEU ASN GLU MET LEU PHE ARG ALA GLN SEQRES 43 A 903 ARG THR GLU VAL ALA GLY MET THR ALA GLN ILE ASN ARG SEQRES 44 A 903 LYS LEU LEU ILE ASN SER LEU TYR GLY ALA LEU GLY ASN SEQRES 45 A 903 VAL TRP PHE ARG TYR TYR ASP LEU ARG ASN ALA THR ALA SEQRES 46 A 903 ILE THR THR PHE GLY GLN MET ALA LEU GLN TRP ILE GLU SEQRES 47 A 903 ARG LYS VAL ASN GLU TYR LEU ASN GLU VAL CYS GLY THR SEQRES 48 A 903 GLU GLY GLU ALA PHE VAL LEU TYR GLY ASP THR ASP SER SEQRES 49 A 903 ILE TYR VAL SER ALA ASP LYS ILE ILE ASP LYS VAL GLY SEQRES 50 A 903 GLU SER LYS PHE ARG ASP THR ASN HIS TRP VAL ASP PHE SEQRES 51 A 903 LEU ASP LYS PHE ALA ARG GLU ARG MET GLU PRO ALA ILE SEQRES 52 A 903 ASP ARG GLY PHE ARG GLU MET CYS GLU TYR MET ASN ASN SEQRES 53 A 903 LYS GLN HIS LEU MET PHE MET ASP ARG GLU ALA ILE ALA SEQRES 54 A 903 GLY PRO PRO LEU GLY SER LYS GLY ILE GLY GLY PHE TRP SEQRES 55 A 903 THR GLY LYS LYS ARG TYR ALA LEU ASN VAL TRP ASP MET SEQRES 56 A 903 GLU GLY THR ARG TYR ALA GLU PRO LYS LEU LYS ILE MET SEQRES 57 A 903 GLY LEU GLU THR GLN LYS SER SER THR PRO LYS ALA VAL SEQRES 58 A 903 GLN LYS ALA LEU LYS GLU CYS ILE ARG ARG MET LEU GLN SEQRES 59 A 903 GLU GLY GLU GLU SER LEU GLN GLU TYR PHE LYS GLU PHE SEQRES 60 A 903 GLU LYS GLU PHE ARG GLN LEU ASN TYR ILE SER ILE ALA SEQRES 61 A 903 SER VAL SER SER ALA ASN ASN ILE ALA LYS TYR ASP VAL SEQRES 62 A 903 GLY GLY PHE PRO GLY PRO LYS CYS PRO PHE HIS ILE ARG SEQRES 63 A 903 GLY ILE LEU THR TYR ASN ARG ALA ILE LYS GLY ASN ILE SEQRES 64 A 903 ASP ALA PRO GLN VAL VAL GLU GLY GLU LYS VAL TYR VAL SEQRES 65 A 903 LEU PRO LEU ARG GLU GLY ASN PRO PHE GLY ASP LYS CYS SEQRES 66 A 903 ILE ALA TRP PRO SER GLY THR GLU ILE THR ASP LEU ILE SEQRES 67 A 903 LYS ASP ASP VAL LEU HIS TRP MET ASP TYR THR VAL LEU SEQRES 68 A 903 LEU GLU LYS THR PHE ILE LYS PRO LEU GLU GLY PHE THR SEQRES 69 A 903 SER ALA ALA LYS LEU ASP TYR GLU LYS LYS ALA SER LEU SEQRES 70 A 903 PHE ASP MET PHE ASP PHE SEQRES 1 T 18 DA DC DA DG G DT DA DA DG DC DA DG DT SEQRES 2 T 18 DC DC DG DC DG SEQRES 1 P 14 DG DC DG DG DA DC DT DG DC DT DT DA DC SEQRES 2 P 14 DC HET TTP A1001 29 HET CA A1002 1 HET CA A1003 1 HET CA A1004 1 HET CA A1005 1 HET CA A1006 1 HET CA A1007 1 HET CA A1008 1 HET NA A1009 1 HET CA A1010 1 HET NA A1011 1 HETNAM TTP THYMIDINE-5'-TRIPHOSPHATE HETNAM CA CALCIUM ION HETNAM NA SODIUM ION FORMUL 4 TTP C10 H17 N2 O14 P3 FORMUL 5 CA 8(CA 2+) FORMUL 12 NA 2(NA 1+) FORMUL 15 HOH *534(H2 O) HELIX 1 1 ASN A 64 GLY A 79 1 16 HELIX 2 2 ASP A 87 TYR A 97 1 11 HELIX 3 3 ASP A 104 ILE A 108 5 5 HELIX 4 4 SER A 163 LYS A 169 1 7 HELIX 5 5 LEU A 170 GLY A 174 5 5 HELIX 6 6 PRO A 179 ASP A 184 1 6 HELIX 7 7 ASN A 193 LYS A 208 1 16 HELIX 8 8 PHE A 221 GLY A 235 1 15 HELIX 9 9 GLY A 235 LYS A 240 1 6 HELIX 10 10 ARG A 241 SER A 243 5 3 HELIX 11 11 ASP A 272 SER A 281 1 10 HELIX 12 12 SER A 289 ASN A 299 1 11 HELIX 13 13 PRO A 308 ASN A 316 1 9 HELIX 14 14 ASN A 316 GLN A 339 1 24 HELIX 15 15 GLN A 339 LYS A 352 1 14 HELIX 16 16 GLN A 354 PHE A 359 5 6 HELIX 17 17 SER A 360 GLN A 376 1 17 HELIX 18 18 SER A 414 ASN A 424 1 11 HELIX 19 19 PRO A 438 ASN A 444 1 7 HELIX 20 20 GLY A 469 LEU A 503 1 35 HELIX 21 21 SER A 523 LYS A 531 1 9 HELIX 22 22 SER A 534 GLY A 571 1 38 HELIX 23 23 ASP A 579 GLY A 610 1 32 HELIX 24 24 ALA A 629 LYS A 635 1 7 HELIX 25 25 GLY A 637 PHE A 641 5 5 HELIX 26 26 ASP A 643 ARG A 658 1 16 HELIX 27 27 ARG A 658 MET A 674 1 17 HELIX 28 28 LEU A 730 LYS A 734 5 5 HELIX 29 29 PRO A 738 GLU A 755 1 18 HELIX 30 30 GLY A 756 PHE A 771 1 16 HELIX 31 31 ARG A 772 LEU A 774 5 3 HELIX 32 32 ILE A 788 LYS A 790 5 3 HELIX 33 33 PRO A 802 ILE A 815 1 14 HELIX 34 34 ILE A 858 MET A 866 1 9 HELIX 35 35 ASP A 867 PHE A 876 1 10 HELIX 36 36 PHE A 876 LYS A 888 1 13 HELIX 37 37 SER A 896 PHE A 901 5 6 SHEET 1 A 3 PHE A 4 ILE A 11 0 SHEET 2 A 3 SER A 14 ILE A 20 -1 O ARG A 18 N LEU A 6 SHEET 3 A 3 GLU A 26 VAL A 31 -1 O ARG A 27 N TYR A 19 SHEET 1 B 2 SER A 36 HIS A 40 0 SHEET 2 B 2 CYS A 57 LEU A 61 -1 O LYS A 60 N LEU A 37 SHEET 1 C 2 PHE A 50 ASP A 51 0 SHEET 2 C 2 LYS A 378 VAL A 379 1 O VAL A 379 N PHE A 50 SHEET 1 D 6 ILE A 186 PHE A 191 0 SHEET 2 D 6 ARG A 145 LEU A 151 1 N PHE A 146 O ILE A 187 SHEET 3 D 6 ILE A 133 ASP A 140 -1 N ILE A 136 O PHE A 149 SHEET 4 D 6 VAL A 110 VAL A 117 -1 N ASN A 112 O TYR A 139 SHEET 5 D 6 ILE A 212 THR A 214 1 O ILE A 212 N ALA A 111 SHEET 6 D 6 SER A 269 VAL A 270 1 O SER A 269 N LEU A 213 SHEET 1 E 2 ASN A 153 SER A 154 0 SHEET 2 E 2 GLY A 157 ASN A 158 -1 O GLY A 157 N SER A 154 SHEET 1 F 2 THR A 248 VAL A 252 0 SHEET 2 F 2 GLU A 261 LEU A 265 -1 O THR A 264 N ARG A 249 SHEET 1 G 7 ASN A 402 ARG A 403 0 SHEET 2 G 7 GLY A 700 GLY A 704 -1 O TRP A 702 N ASN A 402 SHEET 3 G 7 ARG A 707 MET A 715 -1 O ARG A 707 N THR A 703 SHEET 4 G 7 MET A 683 ALA A 689 -1 N ILE A 688 O TRP A 713 SHEET 5 G 7 VAL A 407 LEU A 412 -1 N VAL A 407 O ALA A 689 SHEET 6 G 7 SER A 624 SER A 628 -1 O VAL A 627 N MET A 408 SHEET 7 G 7 VAL A 617 TYR A 619 -1 N LEU A 618 O TYR A 626 SHEET 1 H 4 ASN A 402 ARG A 403 0 SHEET 2 H 4 GLY A 700 GLY A 704 -1 O TRP A 702 N ASN A 402 SHEET 3 H 4 ARG A 707 MET A 715 -1 O ARG A 707 N THR A 703 SHEET 4 H 4 THR A 718 MET A 728 -1 O LYS A 726 N LEU A 710 SHEET 1 I 3 ILE A 430 THR A 433 0 SHEET 2 I 3 MET A 461 TYR A 463 -1 O MET A 462 N ALA A 431 SHEET 3 I 3 SER A 455 CYS A 456 -1 N SER A 455 O TYR A 463 SHEET 1 J 3 SER A 781 SER A 784 0 SHEET 2 J 3 LYS A 829 PRO A 834 -1 O VAL A 832 N SER A 781 SHEET 3 J 3 CYS A 845 PRO A 849 -1 O TRP A 848 N TYR A 831 SHEET 1 K 2 ASP A 792 VAL A 793 0 SHEET 2 K 2 PHE A 796 PRO A 797 -1 O PHE A 796 N VAL A 793 LINK OE2 GLU A 116 CA CA A1004 1555 1555 2.37 LINK OE1 GLU A 116 CA CA A1004 1555 1555 2.51 LINK OE1 GLU A 172 CA CA A1008 1555 1555 2.46 LINK OE2 GLU A 177 CA CA A1008 1555 1555 2.35 LINK OD2 ASP A 192 CA CA A1007 1555 1555 2.45 LINK OD1 ASP A 192 CA CA A1007 1555 1555 2.93 LINK OE2 GLU A 196 CA CA A1007 1555 1555 2.40 LINK OE1 GLU A 196 CA CA A1007 1555 1555 2.42 LINK OD1 ASN A 232 NA NA A1011 1555 1555 2.37 LINK OD2 ASP A 411 CA CA A1002 1555 1555 2.42 LINK OD1 ASP A 411 CA CA A1002 1555 1555 2.44 LINK OD2 ASP A 411 CA CA A1003 1555 1555 2.39 LINK OD1 ASP A 411 CA CA A1010 1555 1555 2.46 LINK O LEU A 412 CA CA A1002 1555 1555 2.36 LINK O ASN A 505 CA CA A1006 1555 1555 2.28 LINK OD1 ASN A 507 CA CA A1006 1555 1555 2.41 LINK O LYS A 531 CA CA A1006 1555 1555 2.38 LINK OD1 ASP A 623 CA CA A1002 1555 1555 2.37 LINK OD2 ASP A 623 CA CA A1003 1555 1555 2.45 LINK OE1 GLU A 660 CA CA A1005 1555 1555 2.45 LINK OD2 ASP A 684 CA CA A1005 1555 1555 2.43 LINK OE1 GLU A 686 CA CA A1010 1555 1555 2.36 LINK O ALA A 721 NA NA A1009 1555 1555 2.84 LINK O2B TTP A1001 CA CA A1002 1555 1555 2.07 LINK O2A TTP A1001 CA CA A1002 1555 1555 2.12 LINK O1G TTP A1001 CA CA A1002 1555 1555 2.24 LINK O2A TTP A1001 CA CA A1003 1555 1555 2.42 LINK CA CA A1003 O HOH A1435 1555 1555 2.44 LINK CA CA A1003 O HOH P 208 1555 1555 2.41 LINK CA CA A1004 O HOH A1163 1555 1555 2.40 LINK CA CA A1004 O HOH A1390 1555 1555 2.45 LINK CA CA A1004 O HOH A1391 1555 1555 2.37 LINK CA CA A1005 O HOH A1339 1555 1555 2.39 LINK CA CA A1005 O HOH A1454 1555 1555 2.41 LINK CA CA A1006 O HOH A1387 1555 1555 2.38 LINK CA CA A1006 O HOH A1388 1555 1555 2.41 LINK CA CA A1006 O HOH A1389 1555 1555 2.42 LINK CA CA A1006 O HOH A1455 1555 1555 2.40 LINK CA CA A1008 O HOH A1405 1555 1555 2.40 LINK NA NA A1009 O HOH A1462 1555 1555 2.89 LINK NA NA A1009 O HOH A1542 1555 1555 2.41 LINK NA NA A1009 O HOH A1543 1555 1555 2.38 LINK NA NA A1009 O HOH A1544 1555 1555 2.40 LINK CA CA A1010 O HOH A1546 1555 1555 2.44 LINK NA NA A1011 O HOH A1538 1555 1555 2.34 LINK NA NA A1011 O HOH A1539 1555 1555 2.40 LINK NA NA A1011 O HOH A1540 1555 1555 2.38 LINK NA NA A1011 O HOH A1541 1555 1555 2.36 SITE 1 AC1 20 ASP A 411 LEU A 412 THR A 413 SER A 414 SITE 2 AC1 20 PHE A 415 TYR A 416 ARG A 482 LYS A 486 SITE 3 AC1 20 LYS A 560 ASN A 564 ASP A 623 CA A1002 SITE 4 AC1 20 CA A1003 CA A1010 HOH A1106 HOH A1183 SITE 5 AC1 20 HOH A1315 DC P 115 DA T 3 DG T 4 SITE 1 AC2 5 ASP A 411 LEU A 412 ASP A 623 TTP A1001 SITE 2 AC2 5 CA A1003 SITE 1 AC3 6 ASP A 411 ASP A 623 TTP A1001 CA A1002 SITE 2 AC3 6 HOH A1435 HOH P 208 SITE 1 AC4 4 GLU A 116 HOH A1163 HOH A1390 HOH A1391 SITE 1 AC5 4 GLU A 660 ASP A 684 HOH A1339 HOH A1454 SITE 1 AC6 7 ASN A 505 ASN A 507 LYS A 531 HOH A1387 SITE 2 AC6 7 HOH A1388 HOH A1389 HOH A1455 SITE 1 AC7 3 ASP A 192 GLU A 196 ASP A 860 SITE 1 AC8 3 GLU A 172 GLU A 177 HOH A1405 SITE 1 AC9 5 ALA A 721 HOH A1462 HOH A1542 HOH A1543 SITE 2 AC9 5 HOH A1544 SITE 1 BC1 5 ASP A 411 GLU A 686 GLU A 716 TTP A1001 SITE 2 BC1 5 HOH A1546 SITE 1 BC2 5 ASN A 232 HOH A1538 HOH A1539 HOH A1540 SITE 2 BC2 5 HOH A1541 CRYST1 80.355 118.630 126.310 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012445 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008430 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007917 0.00000