HEADER IMMUNE SYSTEM 01-MAY-13 4KHX TITLE CRYSTAL STRUCTURE OF GP41 HELIX COMPLEXED WITH ANTIBODY 8062 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GP41 HELIX; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 8062 HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 MOL_ID: 3; COMPND 9 MOLECULE: 8062 LIGHT CHAIN; COMPND 10 CHAIN: L SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS IMMUNE SYSTEM, GP41 EXPDTA X-RAY DIFFRACTION AUTHOR M.LI,A.GUSTCHINA,A.WLODAWER REVDAT 2 15-NOV-17 4KHX 1 AUTHOR REMARK REVDAT 1 12-MAR-14 4KHX 0 JRNL AUTH E.GUSTCHINA,M.LI,R.GHIRLANDO,P.SCHUCK,J.M.LOUIS,J.PIERSON, JRNL AUTH 2 P.RAO,S.SUBRAMANIAM,A.GUSTCHINA,G.M.CLORE,A.WLODAWER JRNL TITL COMPLEXES OF NEUTRALIZING AND NON-NEUTRALIZING AFFINITY JRNL TITL 2 MATURED FABS WITH A MIMETIC OF THE INTERNAL TRIMERIC JRNL TITL 3 COILED-COIL OF HIV-1 GP41. JRNL REF PLOS ONE V. 8 78187 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 24244293 JRNL DOI 10.1371/JOURNAL.PONE.0078187 REMARK 2 REMARK 2 RESOLUTION. 2.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 3 NUMBER OF REFLECTIONS : 13236 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 663 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.9541 - 4.9897 0.99 2827 148 0.2059 0.2368 REMARK 3 2 4.9897 - 3.9631 1.00 2769 128 0.2083 0.2674 REMARK 3 3 3.9631 - 3.4629 0.93 2524 137 0.3045 0.3850 REMARK 3 4 3.4629 - 3.1466 0.99 2668 156 0.3015 0.3826 REMARK 3 5 3.1466 - 2.9212 0.66 1785 94 0.3360 0.4196 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.28 REMARK 3 B_SOL : 70.40 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -14.31970 REMARK 3 B22 (A**2) : -14.31970 REMARK 3 B33 (A**2) : 40.01120 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3709 REMARK 3 ANGLE : 0.804 5039 REMARK 3 CHIRALITY : 0.055 574 REMARK 3 PLANARITY : 0.005 643 REMARK 3 DIHEDRAL : 16.791 1323 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 2:39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.6533 25.8618 -30.3567 REMARK 3 T TENSOR REMARK 3 T11: 0.8639 T22: 0.8556 REMARK 3 T33: 0.5962 T12: 0.0150 REMARK 3 T13: -0.1151 T23: -0.1593 REMARK 3 L TENSOR REMARK 3 L11: 1.7982 L22: 2.0048 REMARK 3 L33: 1.4267 L12: -0.7235 REMARK 3 L13: 0.8947 L23: 0.8489 REMARK 3 S TENSOR REMARK 3 S11: -0.1625 S12: 0.6763 S13: -0.2880 REMARK 3 S21: -0.3066 S22: -0.2884 S23: -0.0795 REMARK 3 S31: 0.5736 S32: -0.7986 S33: 0.0189 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 40:67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.3114 31.5767 17.8144 REMARK 3 T TENSOR REMARK 3 T11: 0.5726 T22: 0.6328 REMARK 3 T33: 0.5971 T12: 0.0237 REMARK 3 T13: -0.0333 T23: 0.0494 REMARK 3 L TENSOR REMARK 3 L11: 2.6790 L22: 2.0504 REMARK 3 L33: 1.7808 L12: 0.0934 REMARK 3 L13: -1.5848 L23: -1.4431 REMARK 3 S TENSOR REMARK 3 S11: -0.3324 S12: -0.2746 S13: -0.1886 REMARK 3 S21: 0.1330 S22: -0.2340 S23: 0.7960 REMARK 3 S31: -0.3601 S32: -0.6383 S33: 0.0031 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN H AND RESID 3:119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.6591 26.7396 29.3557 REMARK 3 T TENSOR REMARK 3 T11: 0.6832 T22: 0.6557 REMARK 3 T33: 0.6508 T12: 0.0311 REMARK 3 T13: 0.0982 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 7.1342 L22: 4.8351 REMARK 3 L33: 2.4040 L12: 0.0900 REMARK 3 L13: -0.8215 L23: -1.0748 REMARK 3 S TENSOR REMARK 3 S11: 0.0284 S12: -0.6002 S13: -0.5498 REMARK 3 S21: 0.0371 S22: 0.1641 S23: 0.1764 REMARK 3 S31: -0.1719 S32: 0.0568 S33: -0.0004 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN H AND RESID 120:218 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8886 18.8401 26.5976 REMARK 3 T TENSOR REMARK 3 T11: 1.2571 T22: 1.0989 REMARK 3 T33: 1.9406 T12: -0.1211 REMARK 3 T13: -0.3402 T23: -0.0614 REMARK 3 L TENSOR REMARK 3 L11: 3.4449 L22: 3.3324 REMARK 3 L33: 0.8165 L12: 0.1742 REMARK 3 L13: 0.1783 L23: -1.4481 REMARK 3 S TENSOR REMARK 3 S11: 0.6504 S12: 0.3413 S13: -0.8007 REMARK 3 S21: -0.7691 S22: 0.7053 S23: 2.2408 REMARK 3 S31: 0.5595 S32: 0.3295 S33: 0.0301 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN L AND RESID 2:114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.2170 45.3067 19.1368 REMARK 3 T TENSOR REMARK 3 T11: 0.8114 T22: 0.7493 REMARK 3 T33: 0.8802 T12: -0.0449 REMARK 3 T13: 0.0775 T23: -0.0630 REMARK 3 L TENSOR REMARK 3 L11: 3.5084 L22: 5.3981 REMARK 3 L33: 5.1363 L12: -3.9242 REMARK 3 L13: 1.4801 L23: -2.3392 REMARK 3 S TENSOR REMARK 3 S11: -0.1584 S12: 0.0878 S13: 0.3967 REMARK 3 S21: -0.3391 S22: 0.0550 S23: -0.1417 REMARK 3 S31: -0.7717 S32: 0.2380 S33: 0.0734 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN L AND RESID 115:208 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2367 30.7679 31.0604 REMARK 3 T TENSOR REMARK 3 T11: 0.5157 T22: 1.5693 REMARK 3 T33: 3.2847 T12: 0.0071 REMARK 3 T13: 0.2627 T23: 0.7028 REMARK 3 L TENSOR REMARK 3 L11: 1.5725 L22: 0.9251 REMARK 3 L33: 0.9068 L12: 0.7575 REMARK 3 L13: 1.1295 L23: 0.8799 REMARK 3 S TENSOR REMARK 3 S11: -0.3083 S12: 0.3206 S13: -0.7788 REMARK 3 S21: -0.9335 S22: 0.5551 S23: 2.6454 REMARK 3 S31: -0.1713 S32: -1.0993 S33: 0.0449 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KHX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079360. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13242 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.921 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09400 REMARK 200 FOR THE DATA SET : 20.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 63.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.41000 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG4000, 20% ISOPROPANOL, PH 5.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: NONAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 64570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -181.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 106.81400 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 53.40700 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 92.50364 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 GLN H 1 REMARK 465 VAL H 2 REMARK 465 ALA H 132 REMARK 465 PRO H 133 REMARK 465 SER H 134 REMARK 465 SER H 135 REMARK 465 LYS H 136 REMARK 465 SER H 137 REMARK 465 THR H 138 REMARK 465 SER H 139 REMARK 465 GLY H 140 REMARK 465 GLU H 219 REMARK 465 PRO H 220 REMARK 465 LYS H 221 REMARK 465 SER H 222 REMARK 465 GLU H 223 REMARK 465 PHE H 224 REMARK 465 GLU H 225 REMARK 465 GLN H 226 REMARK 465 LYS H 227 REMARK 465 LEU H 228 REMARK 465 ILE H 229 REMARK 465 SER H 230 REMARK 465 GLU H 231 REMARK 465 GLU H 232 REMARK 465 ASP H 233 REMARK 465 LEU H 234 REMARK 465 ASN H 235 REMARK 465 GLY H 236 REMARK 465 ALA H 237 REMARK 465 PRO H 238 REMARK 465 HIS H 239 REMARK 465 HIS H 240 REMARK 465 HIS H 241 REMARK 465 HIS H 242 REMARK 465 HIS H 243 REMARK 465 HIS H 244 REMARK 465 ASP L 1 REMARK 465 ARG L 191 REMARK 465 SER L 192 REMARK 465 ALA L 209 REMARK 465 PRO L 210 REMARK 465 THR L 211 REMARK 465 GLU L 212 REMARK 465 ALA L 213 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER L 116 OG SER L 139 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO L 28 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 PRO L 39 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 3 -145.55 -77.74 REMARK 500 ILE A 66 -61.91 -109.97 REMARK 500 CYS H 22 85.26 -160.45 REMARK 500 PRO H 41 104.74 -52.98 REMARK 500 PHE H 107 97.83 -69.33 REMARK 500 PRO H 154 -158.92 -104.90 REMARK 500 ALA H 165 5.39 -69.84 REMARK 500 THR H 167 -37.49 -167.51 REMARK 500 VAL H 189 -159.74 -148.00 REMARK 500 LEU H 196 -82.07 -67.71 REMARK 500 ASP L 25 -98.58 -63.53 REMARK 500 PRO L 28 -81.45 -18.61 REMARK 500 TYR L 29 -76.00 -175.02 REMARK 500 PRO L 39 -98.50 -8.62 REMARK 500 ASP L 50 -101.44 -68.12 REMARK 500 SER L 66 -105.97 -124.16 REMARK 500 SER L 89 -169.86 -160.80 REMARK 500 MET L 93 -61.33 -95.86 REMARK 500 LEU L 127 8.15 -58.03 REMARK 500 LYS L 131 138.18 -171.70 REMARK 500 ALA L 132 111.89 80.39 REMARK 500 CYS L 136 113.35 -166.37 REMARK 500 ALA L 145 118.84 -161.67 REMARK 500 ASP L 153 89.57 56.21 REMARK 500 SER L 154 -5.69 71.64 REMARK 500 ASN L 171 -126.76 -75.91 REMARK 500 LEU L 180 99.92 -168.75 REMARK 500 GLN L 186 -43.01 -142.91 REMARK 500 LYS L 188 37.80 -71.64 REMARK 500 SER L 189 40.47 -147.61 REMARK 500 SER L 202 81.09 -58.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MAC RELATED DB: PDB REMARK 900 SAME ANTIBODY BUT DIFFERENT HELIX BUNDLE REMARK 900 RELATED ID: 4KHT RELATED DB: PDB DBREF 4KHX A 1 67 PDB 4KHX 4KHX 1 67 DBREF 4KHX H 1 244 PDB 4KHX 4KHX 1 244 DBREF 4KHX L 1 213 PDB 4KHX 4KHX 1 213 SEQRES 1 A 67 GLY CYS CYS GLY GLY ILE LYS LYS GLU ILE GLU ALA ILE SEQRES 2 A 67 LYS LYS GLU GLN GLU ALA ILE LYS LYS LYS ILE GLU ALA SEQRES 3 A 67 ILE GLU LYS GLU LEU SER GLY ILE VAL GLN GLN GLN ASN SEQRES 4 A 67 ASN LEU LEU ARG ALA ILE GLU ALA GLN GLN HIS LEU LEU SEQRES 5 A 67 GLN LEU THR VAL TRP GLY ILE LYS GLN LEU GLN ALA ARG SEQRES 6 A 67 ILE LEU SEQRES 1 H 245 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 245 PRO GLY SER SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 245 GLY THR PHE ASN SER TYR ALA PHE SER TRP VAL ARG GLN SEQRES 4 H 245 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY SER ILE ILE SEQRES 5 H 245 PRO LEU PHE GLY PHE VAL VAL TYR ALA GLN LYS PHE GLN SEQRES 6 H 245 GLY ARG VAL THR ILE THR ALA ASP GLU SER THR SER THR SEQRES 7 H 245 ALA TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 H 245 ALA VAL TYR TYR CYS ALA ARG TYR PHE ASP THR TYR ASN SEQRES 9 H 245 ASN TYR GLY PHE ALA ASN TRP GLY GLN GLY THR LEU VAL SEQRES 10 H 245 THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE SEQRES 11 H 245 PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR SEQRES 12 H 245 ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU SEQRES 13 H 245 PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER SEQRES 14 H 245 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY SEQRES 15 H 245 LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SEQRES 16 H 245 SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS SEQRES 17 H 245 LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO SEQRES 18 H 245 LYS SER GLU PHE GLU GLN LYS LEU ILE SER GLU GLU ASP SEQRES 19 H 245 LEU ASN GLY ALA PRO HIS HIS HIS HIS HIS HIS SEQRES 1 L 213 ASP ILE GLU LEU THR GLN PRO PRO SER VAL SER VAL VAL SEQRES 2 L 213 PRO GLY GLN THR ALA ARG ILE SER CYS SER GLY ASP ASN SEQRES 3 L 213 ILE PRO TYR GLU TYR ALA SER TRP TYR GLN GLN LYS PRO SEQRES 4 L 213 GLY GLN ALA PRO VAL LEU VAL ILE TYR GLY ASP ASN ASN SEQRES 5 L 213 ARG PRO SER GLY ILE PRO GLU ARG PHE SER GLY SER ASN SEQRES 6 L 213 SER GLY ASN THR ALA THR LEU THR ILE SER GLY THR GLN SEQRES 7 L 213 ALA GLU ASP GLU ALA ASP TYR TYR CYS ALA SER TRP ASP SEQRES 8 L 213 SER MET THR VAL ASP GLY VAL PHE GLY GLY GLY THR LYS SEQRES 9 L 213 LEU THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SER VAL SEQRES 10 L 213 THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN ALA ASN SEQRES 11 L 213 LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE TYR PRO SEQRES 12 L 213 GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SER PRO SEQRES 13 L 213 VAL LYS ALA GLY VAL GLU THR THR THR PRO SER LYS GLN SEQRES 14 L 213 SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SER LEU SEQRES 15 L 213 THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SER CYS SEQRES 16 L 213 GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS THR VAL SEQRES 17 L 213 ALA PRO THR GLU ALA HELIX 1 1 GLY A 4 GLU A 16 1 13 HELIX 2 2 GLU A 18 LEU A 67 1 50 HELIX 3 3 THR H 28 TYR H 32 5 5 HELIX 4 4 ARG H 86 THR H 90 5 5 HELIX 5 5 TRP H 161 ALA H 165 5 5 HELIX 6 6 GLN L 78 GLU L 82 5 5 HELIX 7 7 GLU L 125 ASN L 130 5 6 SHEET 1 A 4 VAL H 5 GLN H 6 0 SHEET 2 A 4 VAL H 18 LYS H 23 -1 O LYS H 23 N VAL H 5 SHEET 3 A 4 THR H 77 LEU H 82 -1 O MET H 80 N VAL H 20 SHEET 4 A 4 VAL H 67 ASP H 72 -1 N THR H 70 O TYR H 79 SHEET 1 B 6 GLU H 10 LYS H 12 0 SHEET 2 B 6 LEU H 115 VAL H 118 1 O THR H 117 N GLU H 10 SHEET 3 B 6 ALA H 91 TYR H 98 -1 N ALA H 91 O VAL H 116 SHEET 4 B 6 ALA H 33 GLN H 39 -1 N VAL H 37 O TYR H 94 SHEET 5 B 6 LEU H 45 ILE H 51 -1 O ILE H 51 N PHE H 34 SHEET 6 B 6 VAL H 57 TYR H 59 -1 O VAL H 58 N SER H 50 SHEET 1 C 4 GLU H 10 LYS H 12 0 SHEET 2 C 4 LEU H 115 VAL H 118 1 O THR H 117 N GLU H 10 SHEET 3 C 4 ALA H 91 TYR H 98 -1 N ALA H 91 O VAL H 116 SHEET 4 C 4 ASN H 109 TRP H 110 -1 O ASN H 109 N ARG H 97 SHEET 1 D 4 SER H 127 PRO H 130 0 SHEET 2 D 4 GLY H 146 TYR H 152 -1 O LEU H 148 N PHE H 129 SHEET 3 D 4 TYR H 183 VAL H 188 -1 O LEU H 185 N VAL H 149 SHEET 4 D 4 HIS H 171 THR H 172 -1 N HIS H 171 O VAL H 188 SHEET 1 E 4 SER H 127 PRO H 130 0 SHEET 2 E 4 GLY H 146 TYR H 152 -1 O LEU H 148 N PHE H 129 SHEET 3 E 4 TYR H 183 VAL H 188 -1 O LEU H 185 N VAL H 149 SHEET 4 E 4 VAL H 176 LEU H 177 -1 N VAL H 176 O SER H 184 SHEET 1 F 3 THR H 158 VAL H 159 0 SHEET 2 F 3 VAL H 205 HIS H 207 -1 O ASN H 206 N THR H 158 SHEET 3 F 3 THR H 212 VAL H 214 -1 O VAL H 214 N VAL H 205 SHEET 1 G 5 SER L 9 VAL L 12 0 SHEET 2 G 5 THR L 103 VAL L 107 1 O THR L 106 N VAL L 10 SHEET 3 G 5 ASP L 84 TRP L 90 -1 N TYR L 85 O THR L 103 SHEET 4 G 5 SER L 33 GLN L 37 -1 N TYR L 35 O TYR L 86 SHEET 5 G 5 VAL L 44 TYR L 48 -1 O VAL L 46 N TRP L 34 SHEET 1 H 4 SER L 9 VAL L 12 0 SHEET 2 H 4 THR L 103 VAL L 107 1 O THR L 106 N VAL L 10 SHEET 3 H 4 ASP L 84 TRP L 90 -1 N TYR L 85 O THR L 103 SHEET 4 H 4 GLY L 97 PHE L 99 -1 O VAL L 98 N SER L 89 SHEET 1 I 3 ALA L 18 SER L 23 0 SHEET 2 I 3 THR L 69 ILE L 74 -1 O ALA L 70 N CYS L 22 SHEET 3 I 3 PHE L 61 ASN L 65 -1 N SER L 62 O THR L 73 SHEET 1 J 4 SER L 116 THR L 118 0 SHEET 2 J 4 LEU L 137 PHE L 141 -1 O SER L 139 N SER L 116 SHEET 3 J 4 TYR L 174 SER L 181 -1 O TYR L 174 N PHE L 141 SHEET 4 J 4 GLU L 162 THR L 163 -1 N GLU L 162 O TYR L 179 SHEET 1 K 3 THR L 133 LEU L 134 0 SHEET 2 K 3 TYR L 174 SER L 181 -1 O LEU L 180 N LEU L 134 SHEET 3 K 3 SER L 167 LYS L 168 -1 N SER L 167 O ALA L 175 SHEET 1 L 2 THR L 147 LYS L 151 0 SHEET 2 L 2 SER L 194 THR L 198 -1 O GLN L 196 N ALA L 149 SSBOND 1 CYS A 2 CYS A 3 1555 2655 2.03 SSBOND 2 CYS H 22 CYS H 95 1555 1555 2.03 SSBOND 3 CYS H 147 CYS H 203 1555 1555 2.04 SSBOND 4 CYS L 22 CYS L 87 1555 1555 2.04 SSBOND 5 CYS L 136 CYS L 195 1555 1555 2.04 CISPEP 1 PHE H 153 PRO H 154 0 -2.23 CISPEP 2 GLU H 155 PRO H 156 0 -4.77 CISPEP 3 LYS L 131 ALA L 132 0 10.28 CISPEP 4 TYR L 142 PRO L 143 0 -1.41 CRYST1 106.814 106.814 98.537 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009362 0.005405 0.000000 0.00000 SCALE2 0.000000 0.010810 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010148 0.00000