data_4KII # _entry.id 4KII # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4KII RCSB RCSB079381 WWPDB D_1000079381 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3NPO . unspecified PDB 3UEU . unspecified # _pdbx_database_status.entry_id 4KII _pdbx_database_status.methods_development_category ? _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2013-05-02 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cherrier, M.V.' 1 'Amara, P.' 2 'Engilberge, S.' 3 'Fontecilla-Camps, J.C.' 4 # _citation.id primary _citation.title 'Structural Basis for Enantioselectivity in the Transfer Hydrogenation of a Ketone Catalyzed by an Artificial Metalloenzyme' _citation.journal_abbrev Eur.J.Inorg.Chem. _citation.journal_volume 21 _citation.page_first 3596 _citation.page_last 3600 _citation.year 2013 _citation.journal_id_ASTM ? _citation.country DE _citation.journal_id_ISSN 1434-1948 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI 10.1002/ejic.201300592 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Cherrier, M.V.' 1 primary 'Amara, P.' 2 primary 'Engilberge, S.' 3 primary 'Chevalley, A.' 4 primary 'Salmain, M.' 5 primary 'Fontecilla-Camps, J.C.' 6 # _cell.length_a 52.950 _cell.length_b 52.950 _cell.length_c 110.680 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 4KII _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.entry_id 4KII _symmetry.Int_Tables_number 154 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat Beta-lactoglobulin 18387.264 1 ? ? ? ? 2 non-polymer syn '[N,N-di(pyridin-2-yl-kappaN)dodecanamide]rhodium' 456.407 1 ? ? ? ? 3 water nat water 18.015 92 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Beta-LG # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;LIVTQTMKGLDIQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPEGDLEILLQKWENDECAQKKIIAEKTKIPA VFKIDALNENKVLVLDTDYKKYLLFCMENSAEPEQSLVCQCLVRTPEVDDEALEKFDKALKALPMHIRLSFNPTQLEEQC HI ; _entity_poly.pdbx_seq_one_letter_code_can ;LIVTQTMKGLDIQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPEGDLEILLQKWENDECAQKKIIAEKTKIPA VFKIDALNENKVLVLDTDYKKYLLFCMENSAEPEQSLVCQCLVRTPEVDDEALEKFDKALKALPMHIRLSFNPTQLEEQC HI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 ILE n 1 3 VAL n 1 4 THR n 1 5 GLN n 1 6 THR n 1 7 MET n 1 8 LYS n 1 9 GLY n 1 10 LEU n 1 11 ASP n 1 12 ILE n 1 13 GLN n 1 14 LYS n 1 15 VAL n 1 16 ALA n 1 17 GLY n 1 18 THR n 1 19 TRP n 1 20 TYR n 1 21 SER n 1 22 LEU n 1 23 ALA n 1 24 MET n 1 25 ALA n 1 26 ALA n 1 27 SER n 1 28 ASP n 1 29 ILE n 1 30 SER n 1 31 LEU n 1 32 LEU n 1 33 ASP n 1 34 ALA n 1 35 GLN n 1 36 SER n 1 37 ALA n 1 38 PRO n 1 39 LEU n 1 40 ARG n 1 41 VAL n 1 42 TYR n 1 43 VAL n 1 44 GLU n 1 45 GLU n 1 46 LEU n 1 47 LYS n 1 48 PRO n 1 49 THR n 1 50 PRO n 1 51 GLU n 1 52 GLY n 1 53 ASP n 1 54 LEU n 1 55 GLU n 1 56 ILE n 1 57 LEU n 1 58 LEU n 1 59 GLN n 1 60 LYS n 1 61 TRP n 1 62 GLU n 1 63 ASN n 1 64 ASP n 1 65 GLU n 1 66 CYS n 1 67 ALA n 1 68 GLN n 1 69 LYS n 1 70 LYS n 1 71 ILE n 1 72 ILE n 1 73 ALA n 1 74 GLU n 1 75 LYS n 1 76 THR n 1 77 LYS n 1 78 ILE n 1 79 PRO n 1 80 ALA n 1 81 VAL n 1 82 PHE n 1 83 LYS n 1 84 ILE n 1 85 ASP n 1 86 ALA n 1 87 LEU n 1 88 ASN n 1 89 GLU n 1 90 ASN n 1 91 LYS n 1 92 VAL n 1 93 LEU n 1 94 VAL n 1 95 LEU n 1 96 ASP n 1 97 THR n 1 98 ASP n 1 99 TYR n 1 100 LYS n 1 101 LYS n 1 102 TYR n 1 103 LEU n 1 104 LEU n 1 105 PHE n 1 106 CYS n 1 107 MET n 1 108 GLU n 1 109 ASN n 1 110 SER n 1 111 ALA n 1 112 GLU n 1 113 PRO n 1 114 GLU n 1 115 GLN n 1 116 SER n 1 117 LEU n 1 118 VAL n 1 119 CYS n 1 120 GLN n 1 121 CYS n 1 122 LEU n 1 123 VAL n 1 124 ARG n 1 125 THR n 1 126 PRO n 1 127 GLU n 1 128 VAL n 1 129 ASP n 1 130 ASP n 1 131 GLU n 1 132 ALA n 1 133 LEU n 1 134 GLU n 1 135 LYS n 1 136 PHE n 1 137 ASP n 1 138 LYS n 1 139 ALA n 1 140 LEU n 1 141 LYS n 1 142 ALA n 1 143 LEU n 1 144 PRO n 1 145 MET n 1 146 HIS n 1 147 ILE n 1 148 ARG n 1 149 LEU n 1 150 SER n 1 151 PHE n 1 152 ASN n 1 153 PRO n 1 154 THR n 1 155 GLN n 1 156 LEU n 1 157 GLU n 1 158 GLU n 1 159 GLN n 1 160 CYS n 1 161 HIS n 1 162 ILE n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name 'bovine,cow,domestic cattle,domestic cow' _entity_src_nat.pdbx_organism_scientific 'Bos taurus' _entity_src_nat.pdbx_ncbi_taxonomy_id 9913 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LACB_BOVIN _struct_ref.pdbx_db_accession P02754 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LIVTQTMKGLDIQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPEGDLEILLQKWENGECAQKKIIAEKTKIPA VFKIDALNENKVLVLDTDYKKYLLFCMENSAEPEQSLACQCLVRTPEVDDEALEKFDKALKALPMHIRLSFNPTQLEEQC HI ; _struct_ref.pdbx_align_begin 17 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4KII _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 162 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P02754 _struct_ref_seq.db_align_beg 17 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 178 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 162 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4KII ASP A 64 ? UNP P02754 GLY 80 'SEE REMARK 999' 64 1 1 4KII VAL A 118 ? UNP P02754 ALA 134 'SEE REMARK 999' 118 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 RHL non-polymer . '[N,N-di(pyridin-2-yl-kappaN)dodecanamide]rhodium' ? 'C22 H31 N3 O Rh' 456.407 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4KII _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 2.44 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 49.51 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;1.44 M trisodium citrate 100 mM Tris HCl pH 7.5 , VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2012-06-30 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si(311)' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97908 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97908 _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID29 # _reflns.entry_id 4KII _reflns.d_resolution_high 1.850 _reflns.number_obs 15842 _reflns.pdbx_Rmerge_I_obs 0.035 _reflns.pdbx_netI_over_sigmaI 30.690 _reflns.percent_possible_obs 99.200 _reflns.B_iso_Wilson_estimate 46.049 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F 2 _reflns.d_resolution_low 45.856 _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.850 1.950 23081 ? 2263 ? 0.438 6.130 ? ? ? ? ? 2294 ? ? 0.962 ? ? 98.600 0.461 ? 1 1 1.950 2.050 18098 ? 1831 ? 0.215 11.130 ? ? ? ? ? 1855 ? ? 0.990 ? ? 98.700 0.227 ? 2 1 2.050 2.150 14130 ? 1523 ? 0.140 15.180 ? ? ? ? ? 1534 ? ? 0.993 ? ? 99.300 0.148 ? 3 1 2.150 2.250 12910 ? 1261 ? 0.102 21.110 ? ? ? ? ? 1275 ? ? 0.997 ? ? 98.900 0.107 ? 4 1 2.250 2.500 23765 ? 2360 ? 0.072 27.170 ? ? ? ? ? 2378 ? ? 0.998 ? ? 99.200 0.076 ? 5 1 2.500 3.000 25800 ? 2711 ? 0.044 39.060 ? ? ? ? ? 2724 ? ? 0.999 ? ? 99.500 0.046 ? 6 1 3.000 4.000 19878 ? 2203 ? 0.031 54.020 ? ? ? ? ? 2208 ? ? 0.999 ? ? 99.800 0.033 ? 7 1 4.000 6.000 10526 ? 1156 ? 0.028 66.320 ? ? ? ? ? 1163 ? ? 0.999 ? ? 99.400 0.029 ? 8 1 6.000 10.000 3241 ? 404 ? 0.027 68.400 ? ? ? ? ? 410 ? ? 0.999 ? ? 98.500 0.029 ? 9 1 10.000 ? 1019 ? 130 ? 0.029 67.750 ? ? ? ? ? 130 ? ? 1.000 ? ? 100.000 0.031 ? 10 1 # _refine.entry_id 4KII _refine.ls_d_res_high 1.8500 _refine.ls_d_res_low 45.8560 _refine.pdbx_ls_sigma_F 2.010 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.1900 _refine.ls_number_reflns_obs 15841 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details Random _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1907 _refine.ls_R_factor_R_work 0.1874 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2199 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 9.9700 _refine.ls_number_reflns_R_free 1579 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 49.7151 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.2200 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 3NPO _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 123.800 _refine.B_iso_min 23.080 _refine.pdbx_overall_phase_error 24.1700 _refine.occupancy_max 1.000 _refine.occupancy_min 0.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1242 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 27 _refine_hist.number_atoms_solvent 92 _refine_hist.number_atoms_total 1361 _refine_hist.d_res_high 1.8500 _refine_hist.d_res_low 45.8560 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.007 ? ? ? ? 'X-RAY DIFFRACTION' f_angle_deg 1.199 ? ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 15.806 ? ? ? ? 'X-RAY DIFFRACTION' # _struct.entry_id 4KII _struct.title 'Beta-lactoglobulin in complex with Cp*Rh(III)Cl N,N-di(pyridin-2-yl)dodecanamide' _struct.pdbx_descriptor Beta-lactoglobulin _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4KII _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' _struct_keywords.text 'beta-barrel, TRANSPORT PROTEIN, fatty acid binding, milk, artificial metalloenzyme' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 11 ? ALA A 16 ? ASP A 11 ALA A 16 5 ? 6 HELX_P HELX_P2 2 ASP A 28 ? LEU A 32 ? ASP A 28 LEU A 32 5 ? 5 HELX_P HELX_P3 3 ASP A 129 ? LYS A 141 ? ASP A 129 LYS A 141 1 ? 13 HELX_P HELX_P4 4 ASN A 152 ? GLU A 157 ? ASN A 152 GLU A 157 1 ? 6 HELX_P HELX_P5 5 GLU A 158 ? ILE A 162 ? GLU A 158 ILE A 162 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 66 SG ? ? ? 1_555 A CYS 160 SG ? ? A CYS 66 A CYS 160 1_555 ? ? ? ? ? ? ? 2.035 ? disulf2 disulf ? ? A CYS 106 SG ? ? ? 1_555 A CYS 119 SG ? ? A CYS 106 A CYS 119 1_555 ? ? ? ? ? ? ? 2.041 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 10 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 17 ? THR A 18 ? GLY A 17 THR A 18 A 2 TYR A 42 ? PRO A 48 ? TYR A 42 PRO A 48 A 3 LEU A 54 ? TRP A 61 ? LEU A 54 TRP A 61 A 4 CYS A 66 ? LYS A 75 ? CYS A 66 LYS A 75 A 5 VAL A 81 ? ILE A 84 ? VAL A 81 ILE A 84 A 6 ASN A 90 ? THR A 97 ? ASN A 90 THR A 97 A 7 TYR A 102 ? GLU A 108 ? TYR A 102 GLU A 108 A 8 LEU A 117 ? VAL A 123 ? LEU A 117 VAL A 123 A 9 TYR A 20 ? ALA A 26 ? TYR A 20 ALA A 26 A 10 ILE A 147 ? SER A 150 ? ILE A 147 SER A 150 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLY A 17 ? N GLY A 17 O LEU A 46 ? O LEU A 46 A 2 3 N GLU A 44 ? N GLU A 44 O LEU A 57 ? O LEU A 57 A 3 4 N ILE A 56 ? N ILE A 56 O ILE A 71 ? O ILE A 71 A 4 5 N GLU A 74 ? N GLU A 74 O LYS A 83 ? O LYS A 83 A 5 6 N PHE A 82 ? N PHE A 82 O VAL A 92 ? O VAL A 92 A 6 7 N ASP A 96 ? N ASP A 96 O LEU A 104 ? O LEU A 104 A 7 8 N LEU A 103 ? N LEU A 103 O LEU A 122 ? O LEU A 122 A 8 9 O CYS A 119 ? O CYS A 119 N ALA A 25 ? N ALA A 25 A 9 10 N MET A 24 ? N MET A 24 O LEU A 149 ? O LEU A 149 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 9 _struct_site.details 'BINDING SITE FOR RESIDUE RHL A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 LEU A 39 ? LEU A 39 . ? 1_555 ? 2 AC1 9 LEU A 54 ? LEU A 54 . ? 1_555 ? 3 AC1 9 ILE A 56 ? ILE A 56 . ? 1_555 ? 4 AC1 9 ILE A 71 ? ILE A 71 . ? 1_555 ? 5 AC1 9 VAL A 92 ? VAL A 92 . ? 1_555 ? 6 AC1 9 VAL A 94 ? VAL A 94 . ? 1_555 ? 7 AC1 9 LEU A 103 ? LEU A 103 . ? 1_555 ? 8 AC1 9 PHE A 105 ? PHE A 105 . ? 1_555 ? 9 AC1 9 MET A 107 ? MET A 107 . ? 1_555 ? # _atom_sites.entry_id 4KII _atom_sites.fract_transf_matrix[1][1] 0.018886 _atom_sites.fract_transf_matrix[1][2] 0.010904 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021807 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009035 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O RH S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 1 ? ? ? A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 GLN 5 5 5 GLN GLN A . n A 1 6 THR 6 6 6 THR THR A . n A 1 7 MET 7 7 7 MET MET A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 GLN 13 13 13 GLN GLN A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 THR 18 18 18 THR THR A . n A 1 19 TRP 19 19 19 TRP TRP A . n A 1 20 TYR 20 20 20 TYR TYR A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 MET 24 24 24 MET MET A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 SER 27 27 27 SER SER A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 ILE 29 29 29 ILE ILE A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 GLN 35 35 35 GLN GLN A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 PRO 38 38 38 PRO PRO A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 ARG 40 40 40 ARG ARG A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 TYR 42 42 42 TYR TYR A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 PRO 48 48 48 PRO PRO A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 PRO 50 50 50 PRO PRO A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 ASP 53 53 53 ASP ASP A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 GLU 55 55 55 GLU GLU A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 GLN 59 59 59 GLN GLN A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 TRP 61 61 61 TRP TRP A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 ASN 63 63 63 ASN ASN A . n A 1 64 ASP 64 64 64 ASP ASP A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 CYS 66 66 66 CYS CYS A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 GLN 68 68 68 GLN GLN A . n A 1 69 LYS 69 69 69 LYS LYS A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 ILE 71 71 71 ILE ILE A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 LYS 75 75 75 LYS LYS A . n A 1 76 THR 76 76 76 THR THR A . n A 1 77 LYS 77 77 77 LYS LYS A . n A 1 78 ILE 78 78 78 ILE ILE A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 ALA 80 80 80 ALA ALA A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 PHE 82 82 82 PHE PHE A . n A 1 83 LYS 83 83 83 LYS LYS A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 ASP 85 85 85 ASP ASP A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 ASN 90 90 90 ASN ASN A . n A 1 91 LYS 91 91 91 LYS LYS A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 LEU 95 95 95 LEU LEU A . n A 1 96 ASP 96 96 96 ASP ASP A . n A 1 97 THR 97 97 97 THR THR A . n A 1 98 ASP 98 98 98 ASP ASP A . n A 1 99 TYR 99 99 99 TYR TYR A . n A 1 100 LYS 100 100 100 LYS LYS A . n A 1 101 LYS 101 101 101 LYS LYS A . n A 1 102 TYR 102 102 102 TYR TYR A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 PHE 105 105 105 PHE PHE A . n A 1 106 CYS 106 106 106 CYS CYS A . n A 1 107 MET 107 107 107 MET MET A . n A 1 108 GLU 108 108 108 GLU GLU A . n A 1 109 ASN 109 109 109 ASN ASN A . n A 1 110 SER 110 110 ? ? ? A . n A 1 111 ALA 111 111 ? ? ? A . n A 1 112 GLU 112 112 ? ? ? A . n A 1 113 PRO 113 113 ? ? ? A . n A 1 114 GLU 114 114 ? ? ? A . n A 1 115 GLN 115 115 115 GLN GLN A . n A 1 116 SER 116 116 116 SER SER A . n A 1 117 LEU 117 117 117 LEU LEU A . n A 1 118 VAL 118 118 118 VAL VAL A . n A 1 119 CYS 119 119 119 CYS CYS A . n A 1 120 GLN 120 120 120 GLN GLN A . n A 1 121 CYS 121 121 121 CYS CYS A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 VAL 123 123 123 VAL VAL A . n A 1 124 ARG 124 124 124 ARG ARG A . n A 1 125 THR 125 125 125 THR THR A . n A 1 126 PRO 126 126 126 PRO PRO A . n A 1 127 GLU 127 127 127 GLU GLU A . n A 1 128 VAL 128 128 128 VAL VAL A . n A 1 129 ASP 129 129 129 ASP ASP A . n A 1 130 ASP 130 130 130 ASP ASP A . n A 1 131 GLU 131 131 131 GLU GLU A . n A 1 132 ALA 132 132 132 ALA ALA A . n A 1 133 LEU 133 133 133 LEU LEU A . n A 1 134 GLU 134 134 134 GLU GLU A . n A 1 135 LYS 135 135 135 LYS LYS A . n A 1 136 PHE 136 136 136 PHE PHE A . n A 1 137 ASP 137 137 137 ASP ASP A . n A 1 138 LYS 138 138 138 LYS LYS A . n A 1 139 ALA 139 139 139 ALA ALA A . n A 1 140 LEU 140 140 140 LEU LEU A . n A 1 141 LYS 141 141 141 LYS LYS A . n A 1 142 ALA 142 142 142 ALA ALA A . n A 1 143 LEU 143 143 143 LEU LEU A . n A 1 144 PRO 144 144 144 PRO PRO A . n A 1 145 MET 145 145 145 MET MET A . n A 1 146 HIS 146 146 146 HIS HIS A . n A 1 147 ILE 147 147 147 ILE ILE A . n A 1 148 ARG 148 148 148 ARG ARG A . n A 1 149 LEU 149 149 149 LEU LEU A . n A 1 150 SER 150 150 150 SER SER A . n A 1 151 PHE 151 151 151 PHE PHE A . n A 1 152 ASN 152 152 152 ASN ASN A . n A 1 153 PRO 153 153 153 PRO PRO A . n A 1 154 THR 154 154 154 THR THR A . n A 1 155 GLN 155 155 155 GLN GLN A . n A 1 156 LEU 156 156 156 LEU LEU A . n A 1 157 GLU 157 157 157 GLU GLU A . n A 1 158 GLU 158 158 158 GLU GLU A . n A 1 159 GLN 159 159 159 GLN GLN A . n A 1 160 CYS 160 160 160 CYS CYS A . n A 1 161 HIS 161 161 161 HIS HIS A . n A 1 162 ILE 162 162 162 ILE ILE A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 313 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2013-09-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 49.5026 40.2816 107.5992 0.5180 0.3346 0.4875 -0.0863 0.1171 -0.0296 2.6047 2.6358 2.2910 0.3969 0.2211 -2.4179 -0.2597 0.0583 0.1980 0.3787 0.3185 0.0072 -0.3138 0.0886 0.1282 'X-RAY DIFFRACTION' 2 ? refined 35.4357 44.7280 121.9642 0.3721 0.3049 0.3487 0.0453 0.0134 0.0508 1.7609 4.3533 4.1804 -0.1832 0.7315 -0.4870 -0.1532 0.2376 -0.0423 -0.1149 0.1298 0.2735 -0.2130 -0.3971 -0.7232 'X-RAY DIFFRACTION' 3 ? refined 38.7836 35.5757 105.0091 0.5615 0.4599 0.3789 -0.1528 -0.0590 -0.0572 3.2173 3.2744 5.8792 0.3584 -0.3711 -1.6355 -0.5941 0.3579 0.1514 0.9381 -0.0572 0.2405 -0.9285 0.8339 -0.4982 'X-RAY DIFFRACTION' 4 ? refined 28.8922 38.1143 114.0269 0.4113 0.7002 0.5506 -0.0544 -0.0515 0.0286 3.6881 6.1320 8.1303 -0.7534 -4.8981 -0.7858 -0.3009 0.1000 -0.0918 1.8185 -1.0945 1.1567 -0.2016 -0.4308 -2.7168 'X-RAY DIFFRACTION' 5 ? refined 32.7932 39.8153 106.2625 0.4336 0.5696 0.5021 -0.1282 -0.1462 0.1290 9.7004 7.1789 5.0243 6.2142 -6.8168 -4.8392 -0.0874 0.6228 -0.5242 0.2210 0.3714 0.8123 -0.9068 0.8915 -0.4813 'X-RAY DIFFRACTION' 6 ? refined 40.3967 50.1630 102.8091 0.5218 0.6591 0.4663 -0.0175 -0.0349 0.1480 6.6989 4.6128 4.5791 1.7909 -2.0545 0.2652 0.0183 0.2418 -0.4228 0.9308 1.3358 0.9329 -0.2192 -0.6520 -1.7349 'X-RAY DIFFRACTION' 7 ? refined 47.5779 41.9481 111.5260 0.2914 0.2209 0.2750 -0.0786 0.0155 -0.0089 5.4223 5.8883 7.0257 0.2258 -2.6245 -0.2265 -0.1620 -0.1064 0.2226 0.0807 -0.1025 -0.2818 0.1938 -0.0166 -0.1491 'X-RAY DIFFRACTION' 8 ? refined 39.6421 57.3111 114.1945 0.9457 0.7973 0.6879 0.1822 -0.0701 0.1866 6.1146 5.9487 1.5308 5.1049 0.1420 -1.1083 -0.2750 -0.7848 -0.8794 0.2706 0.8230 -1.1626 -0.1730 -1.1755 0.6597 'X-RAY DIFFRACTION' 9 ? refined 44.9139 36.5835 118.5492 0.3523 0.2182 0.3389 -0.0158 0.0053 -0.0194 1.6566 2.3014 4.6110 0.0196 -1.1775 0.5385 -0.0788 0.0481 0.0764 -0.0725 -0.0999 -1.0668 -0.4831 0.3430 0.2540 'X-RAY DIFFRACTION' 10 ? refined 52.6526 42.0183 122.5019 0.4268 0.4606 0.6355 -0.1256 -0.0991 0.0314 3.2717 4.3472 4.3178 -0.6448 0.3449 0.0838 0.3079 -0.3757 -0.0887 -0.5806 0.1743 -1.9561 0.3231 -0.1186 0.7424 'X-RAY DIFFRACTION' 11 ? refined 42.8622 45.7721 125.1546 0.5398 0.2688 0.4007 -0.0731 -0.0256 -0.0359 1.6685 3.4226 1.6134 -1.2610 1.0557 0.7933 -0.2377 0.0606 0.2110 -0.3379 0.3700 -1.2446 1.3404 -0.4515 0.3393 'X-RAY DIFFRACTION' 12 ? refined 34.8344 30.4582 123.5946 0.4027 0.3562 0.4242 -0.1495 0.1006 -0.0200 6.8320 7.9710 6.5596 -3.2816 1.7659 -0.5764 -0.0311 0.1371 -0.1858 -0.1117 -0.5911 1.3399 0.4096 0.9883 -1.2811 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 0 A 0 'chain A and (resid 2 through 19 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 0 A 0 'chain A and (resid 20 through 41 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 0 A 0 'chain A and (resid 42 through 53 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 0 A 0 'chain A and (resid 54 through 65 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 0 A 0 'chain A and (resid 66 through 75 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 0 A 0 'chain A and (resid 76 through 89 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 7 7 A 0 A 0 'chain A and (resid 90 through 108 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 8 8 A 0 A 0 'chain A and (resid 109 through 116 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 9 9 A 0 A 0 'chain A and (resid 117 through 129 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 10 10 A 0 A 0 'chain A and (resid 130 through 141 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 11 11 A 0 A 0 'chain A and (resid 142 through 152 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 12 12 A 0 A 0 'chain A and (resid 153 through 162 )' ? ? ? ? ? # _pdbx_phasing_MR.entry_id 4KII _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 5.650 _pdbx_phasing_MR.d_res_low_rotation 45.860 _pdbx_phasing_MR.d_res_high_translation 5.650 _pdbx_phasing_MR.d_res_low_translation 45.860 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 2 PHASER 2.5.0 'Sat Jun 2 03:08:35 2012 (svn )' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 MxCuBE . ? ? ? ? 'data collection' ? ? ? 6 PHENIX 1.8.2_1309 ? ? ? ? refinement ? ? ? # _pdbx_entry_details.entry_id 4KII _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'THE SEQUENCE HAS NATURAL VARIANTS(80, 134).' _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 NH1 A ARG 40 ? ? O A HOH 385 ? ? 1.95 2 1 O A THR 49 ? ? O A HOH 379 ? ? 1.99 3 1 NE2 A GLN 13 ? ? O A HOH 379 ? ? 2.04 4 1 OD1 A ASP 33 ? B O A HOH 325 ? ? 2.05 5 1 O A HOH 357 ? ? O A HOH 358 ? ? 2.06 6 1 O A LEU 32 ? ? O A HOH 385 ? ? 2.08 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 96 ? ? -171.91 142.91 2 1 TYR A 99 ? ? 68.48 -39.91 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A THR 18 ? CA B A THR 18 CA 2 1 Y 0 A THR 18 ? CB B A THR 18 CB 3 1 Y 0 A THR 18 ? OG1 B A THR 18 OG1 4 1 Y 0 A THR 18 ? CG2 B A THR 18 CG2 5 1 Y 0 A LEU 103 ? CA B A LEU 103 CA 6 1 Y 0 A LEU 103 ? CB B A LEU 103 CB 7 1 Y 0 A LEU 103 ? CG B A LEU 103 CG 8 1 Y 0 A LEU 103 ? CD1 B A LEU 103 CD1 9 1 Y 0 A LEU 103 ? CD2 B A LEU 103 CD2 10 1 N 0 A RHL 201 ? RH1 ? B RHL ? RH1 11 1 N 0 A RHL 201 ? N4 ? B RHL ? N4 12 1 N 0 A RHL 201 ? N5 ? B RHL ? N5 13 1 N 0 A RHL 201 ? N6 ? B RHL ? N6 14 1 N 0 A RHL 201 ? C11 ? B RHL ? C11 15 1 N 0 A RHL 201 ? C12 ? B RHL ? C12 16 1 N 0 A RHL 201 ? C13 ? B RHL ? C13 17 1 N 0 A RHL 201 ? C14 ? B RHL ? C14 18 1 N 0 A RHL 201 ? C15 ? B RHL ? C15 19 1 N 0 A RHL 201 ? C16 ? B RHL ? C16 20 1 N 0 A RHL 201 ? C17 ? B RHL ? C17 21 1 N 0 A RHL 201 ? C18 ? B RHL ? C18 22 1 N 0 A RHL 201 ? C19 ? B RHL ? C19 23 1 N 0 A RHL 201 ? C20 ? B RHL ? C20 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LEU 1 ? A LEU 1 2 1 Y 1 A SER 110 ? A SER 110 3 1 Y 1 A ALA 111 ? A ALA 111 4 1 Y 1 A GLU 112 ? A GLU 112 5 1 Y 1 A PRO 113 ? A PRO 113 6 1 Y 1 A GLU 114 ? A GLU 114 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '[N,N-di(pyridin-2-yl-kappaN)dodecanamide]rhodium' RHL 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RHL 1 201 2 RHL PLM A . C 3 HOH 1 301 1 HOH HOH A . C 3 HOH 2 302 2 HOH HOH A . C 3 HOH 3 303 3 HOH HOH A . C 3 HOH 4 304 4 HOH HOH A . C 3 HOH 5 305 5 HOH HOH A . C 3 HOH 6 306 6 HOH HOH A . C 3 HOH 7 307 7 HOH HOH A . C 3 HOH 8 308 8 HOH HOH A . C 3 HOH 9 309 9 HOH HOH A . C 3 HOH 10 310 10 HOH HOH A . C 3 HOH 11 311 11 HOH HOH A . C 3 HOH 12 312 12 HOH HOH A . C 3 HOH 13 313 13 HOH HOH A . C 3 HOH 14 314 14 HOH HOH A . C 3 HOH 15 315 16 HOH HOH A . C 3 HOH 16 316 18 HOH HOH A . C 3 HOH 17 317 19 HOH HOH A . C 3 HOH 18 318 20 HOH HOH A . C 3 HOH 19 319 21 HOH HOH A . C 3 HOH 20 320 22 HOH HOH A . C 3 HOH 21 321 24 HOH HOH A . C 3 HOH 22 322 25 HOH HOH A . C 3 HOH 23 323 26 HOH HOH A . C 3 HOH 24 324 27 HOH HOH A . C 3 HOH 25 325 28 HOH HOH A . C 3 HOH 26 326 29 HOH HOH A . C 3 HOH 27 327 30 HOH HOH A . C 3 HOH 28 328 31 HOH HOH A . C 3 HOH 29 329 32 HOH HOH A . C 3 HOH 30 330 33 HOH HOH A . C 3 HOH 31 331 34 HOH HOH A . C 3 HOH 32 332 35 HOH HOH A . C 3 HOH 33 333 36 HOH HOH A . C 3 HOH 34 334 37 HOH HOH A . C 3 HOH 35 335 38 HOH HOH A . C 3 HOH 36 336 39 HOH HOH A . C 3 HOH 37 337 40 HOH HOH A . C 3 HOH 38 338 41 HOH HOH A . C 3 HOH 39 339 42 HOH HOH A . C 3 HOH 40 340 43 HOH HOH A . C 3 HOH 41 341 44 HOH HOH A . C 3 HOH 42 342 45 HOH HOH A . C 3 HOH 43 343 46 HOH HOH A . C 3 HOH 44 344 47 HOH HOH A . C 3 HOH 45 345 48 HOH HOH A . C 3 HOH 46 346 49 HOH HOH A . C 3 HOH 47 347 50 HOH HOH A . C 3 HOH 48 348 51 HOH HOH A . C 3 HOH 49 349 53 HOH HOH A . C 3 HOH 50 350 54 HOH HOH A . C 3 HOH 51 351 55 HOH HOH A . C 3 HOH 52 352 56 HOH HOH A . C 3 HOH 53 353 57 HOH HOH A . C 3 HOH 54 354 58 HOH HOH A . C 3 HOH 55 355 60 HOH HOH A . C 3 HOH 56 356 62 HOH HOH A . C 3 HOH 57 357 64 HOH HOH A . C 3 HOH 58 358 65 HOH HOH A . C 3 HOH 59 359 67 HOH HOH A . C 3 HOH 60 360 68 HOH HOH A . C 3 HOH 61 361 69 HOH HOH A . C 3 HOH 62 362 70 HOH HOH A . C 3 HOH 63 363 71 HOH HOH A . C 3 HOH 64 364 72 HOH HOH A . C 3 HOH 65 365 73 HOH HOH A . C 3 HOH 66 366 74 HOH HOH A . C 3 HOH 67 367 75 HOH HOH A . C 3 HOH 68 368 76 HOH HOH A . C 3 HOH 69 369 78 HOH HOH A . C 3 HOH 70 370 79 HOH HOH A . C 3 HOH 71 371 81 HOH HOH A . C 3 HOH 72 372 83 HOH HOH A . C 3 HOH 73 373 85 HOH HOH A . C 3 HOH 74 374 86 HOH HOH A . C 3 HOH 75 375 87 HOH HOH A . C 3 HOH 76 376 88 HOH HOH A . C 3 HOH 77 377 90 HOH HOH A . C 3 HOH 78 378 91 HOH HOH A . C 3 HOH 79 379 93 HOH HOH A . C 3 HOH 80 380 96 HOH HOH A . C 3 HOH 81 381 97 HOH HOH A . C 3 HOH 82 382 99 HOH HOH A . C 3 HOH 83 383 100 HOH HOH A . C 3 HOH 84 384 101 HOH HOH A . C 3 HOH 85 385 102 HOH HOH A . C 3 HOH 86 386 104 HOH HOH A . C 3 HOH 87 387 105 HOH HOH A . C 3 HOH 88 388 106 HOH HOH A . C 3 HOH 89 389 108 HOH HOH A . C 3 HOH 90 390 109 HOH HOH A . C 3 HOH 91 391 110 HOH HOH A . C 3 HOH 92 392 111 HOH HOH A . #