data_4KJI # _entry.id 4KJI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4KJI pdb_00004kji 10.2210/pdb4kji/pdb NDB NA2445 ? ? RCSB RCSB079416 ? ? WWPDB D_1000079416 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4KJI _pdbx_database_status.recvd_initial_deposition_date 2013-05-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Li, C.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Structural Rearrangement in an RsmA/CsrA Ortholog of Pseudomonas aeruginosa Creates a Dimeric RNA-Binding Protein, RsmN.' _citation.journal_abbrev Structure _citation.journal_volume 21 _citation.page_first 1659 _citation.page_last 1671 _citation.year 2013 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23954502 _citation.pdbx_database_id_DOI 10.1016/j.str.2013.07.007 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Morris, E.R.' 1 ? primary 'Hall, G.' 2 ? primary 'Li, C.' 3 ? primary 'Heeb, S.' 4 ? primary 'Kulkarni, R.V.' 5 ? primary 'Lovelock, L.' 6 ? primary 'Silistre, H.' 7 ? primary 'Messina, M.' 8 ? primary 'Camara, M.' 9 ? primary 'Emsley, J.' 10 ? primary 'Williams, P.' 11 ? primary 'Searle, M.S.' 12 ? # _cell.entry_id 4KJI _cell.length_a 83.649 _cell.length_b 83.649 _cell.length_c 94.239 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4KJI _symmetry.space_group_name_H-M 'P 43 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RsmN, a RNA-binding protein of Regulator of Secondary Metabolism' 8768.108 2 ? ? ? ? 2 polymer syn RsmZ-2 5191.176 2 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no HHHHHHGSMGFLILSRREGEGITLSLKADYPAEELIRQLREGGIRILVTDIIGNQARVGIEAPRGVLIVRDELKTAPKG HHHHHHGSMGFLILSRREGEGITLSLKADYPAEELIRQLREGGIRILVTDIIGNQARVGIEAPRGVLIVRDELKTAPKG A,B ? 2 polyribonucleotide no no CCCCGAAGGAUCGGGG CCCCGAAGGAUCGGGG C,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 HIS n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 GLY n 1 8 SER n 1 9 MET n 1 10 GLY n 1 11 PHE n 1 12 LEU n 1 13 ILE n 1 14 LEU n 1 15 SER n 1 16 ARG n 1 17 ARG n 1 18 GLU n 1 19 GLY n 1 20 GLU n 1 21 GLY n 1 22 ILE n 1 23 THR n 1 24 LEU n 1 25 SER n 1 26 LEU n 1 27 LYS n 1 28 ALA n 1 29 ASP n 1 30 TYR n 1 31 PRO n 1 32 ALA n 1 33 GLU n 1 34 GLU n 1 35 LEU n 1 36 ILE n 1 37 ARG n 1 38 GLN n 1 39 LEU n 1 40 ARG n 1 41 GLU n 1 42 GLY n 1 43 GLY n 1 44 ILE n 1 45 ARG n 1 46 ILE n 1 47 LEU n 1 48 VAL n 1 49 THR n 1 50 ASP n 1 51 ILE n 1 52 ILE n 1 53 GLY n 1 54 ASN n 1 55 GLN n 1 56 ALA n 1 57 ARG n 1 58 VAL n 1 59 GLY n 1 60 ILE n 1 61 GLU n 1 62 ALA n 1 63 PRO n 1 64 ARG n 1 65 GLY n 1 66 VAL n 1 67 LEU n 1 68 ILE n 1 69 VAL n 1 70 ARG n 1 71 ASP n 1 72 GLU n 1 73 LEU n 1 74 LYS n 1 75 THR n 1 76 ALA n 1 77 PRO n 1 78 LYS n 1 79 GLY n 2 1 C n 2 2 C n 2 3 C n 2 4 C n 2 5 G n 2 6 A n 2 7 A n 2 8 G n 2 9 G n 2 10 A n 2 11 U n 2 12 C n 2 13 G n 2 14 G n 2 15 G n 2 16 G n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PA14_68470, rsmN' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain PAO1 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pseudomonas aeruginosa' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 208963 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'C41 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pME600 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'This sequence occurs naturally in Pseudomonas aeruginosa' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP Q02EI1_PSEAB Q02EI1 1 MGFLILSRREGEGITLSLKADYPAEELIRQLREGGIRILVTDIIGNQARVGIEAPRGVLIVRDELKTAPKG 1 ? 2 PDB 4KJI 4KJI 2 CCCCGAAGGAUCGGGG ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4KJI A 9 ? 79 ? Q02EI1 1 ? 71 ? 1 71 2 1 4KJI B 9 ? 79 ? Q02EI1 1 ? 71 ? 1 71 3 2 4KJI C 1 ? 16 ? 4KJI 1 ? 16 ? 1 16 4 2 4KJI D 1 ? 16 ? 4KJI 1 ? 16 ? 1 16 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4KJI HIS A 1 ? UNP Q02EI1 ? ? 'expression tag' -7 1 1 4KJI HIS A 2 ? UNP Q02EI1 ? ? 'expression tag' -6 2 1 4KJI HIS A 3 ? UNP Q02EI1 ? ? 'expression tag' -5 3 1 4KJI HIS A 4 ? UNP Q02EI1 ? ? 'expression tag' -4 4 1 4KJI HIS A 5 ? UNP Q02EI1 ? ? 'expression tag' -3 5 1 4KJI HIS A 6 ? UNP Q02EI1 ? ? 'expression tag' -2 6 1 4KJI GLY A 7 ? UNP Q02EI1 ? ? 'expression tag' -1 7 1 4KJI SER A 8 ? UNP Q02EI1 ? ? 'expression tag' 0 8 2 4KJI HIS B 1 ? UNP Q02EI1 ? ? 'expression tag' -7 9 2 4KJI HIS B 2 ? UNP Q02EI1 ? ? 'expression tag' -6 10 2 4KJI HIS B 3 ? UNP Q02EI1 ? ? 'expression tag' -5 11 2 4KJI HIS B 4 ? UNP Q02EI1 ? ? 'expression tag' -4 12 2 4KJI HIS B 5 ? UNP Q02EI1 ? ? 'expression tag' -3 13 2 4KJI HIS B 6 ? UNP Q02EI1 ? ? 'expression tag' -2 14 2 4KJI GLY B 7 ? UNP Q02EI1 ? ? 'expression tag' -1 15 2 4KJI SER B 8 ? UNP Q02EI1 ? ? 'expression tag' 0 16 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4KJI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.95 _exptl_crystal.density_percent_sol 58.34 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method EVAPORATION _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.08M Mg(OAc)2, 0.1M NaOAc pH 4.5, 4% benzamidine HCl, 4% PEG 8000., EVAPORATION' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9686 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I24' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I24 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9686 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4KJI _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 29.57 _reflns.d_resolution_high 3.2 _reflns.number_obs 5917 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs 0.085 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 8.8 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 3.20 _reflns_shell.d_res_low 3.37 _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 18.6 _reflns_shell.pdbx_redundancy 6.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4KJI _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 5628 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.56 _refine.ls_d_res_high 3.20 _refine.ls_percent_reflns_obs 99.5 _refine.ls_R_factor_obs 0.226 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.222 _refine.ls_R_factor_R_free 0.317 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.500 _refine.ls_number_reflns_R_free 267 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.944 _refine.correlation_coeff_Fo_to_Fc_free 0.908 _refine.B_iso_mean 109.22 _refine.aniso_B[1][1] 3.99000 _refine.aniso_B[2][2] 3.99000 _refine.aniso_B[3][3] -7.98000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT' _refine.pdbx_starting_model 'PDB ENTRIES 1vpz for protein and 2JPP for RNA' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.566 _refine.overall_SU_ML 0.464 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 29.686 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1008 _refine_hist.pdbx_number_atoms_nucleic_acid 688 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1696 _refine_hist.d_res_high 3.20 _refine_hist.d_res_low 29.56 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.013 0.016 ? 1784 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.718 1.744 ? 2561 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.607 5.000 ? 127 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.872 22.174 ? 46 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 24.851 15.000 ? 200 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 20.788 15.000 ? 16 'X-RAY DIFFRACTION' ? r_chiral_restr 0.097 0.200 ? 290 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.013 0.020 ? 1080 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 3.20 _refine_ls_shell.d_res_low 3.28 _refine_ls_shell.number_reflns_R_work 330 _refine_ls_shell.R_factor_R_work 0.3720 _refine_ls_shell.percent_reflns_obs 96.36 _refine_ls_shell.R_factor_R_free 0.4620 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 14 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 4KJI _struct.title 'Novel re-arrangement of an RsmA/cSRa family protein to create a structurally distinct new RNA-binding family member' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4KJI _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN/RNA' _struct_keywords.text 'PROTEIN-RNA COMPLEX, BETA BARREL, BETA-BARREL, POST-TRANSCRIPTIONAL REGULATION, RNA BINDING, RNA BINDING PROTEIN-RNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 31 ? GLY A 42 ? PRO A 23 GLY A 34 1 ? 12 HELX_P HELX_P2 2 PRO B 31 ? GLY B 43 ? PRO B 23 GLY B 35 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? C C 1 N3 ? ? ? 1_555 C G 16 N1 ? ? C C 1 C G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? C C 1 N4 ? ? ? 1_555 C G 16 O6 ? ? C C 1 C G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C C 1 O2 ? ? ? 1_555 C G 16 N2 ? ? C C 1 C G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C C 2 N3 ? ? ? 1_555 C G 15 N1 ? ? C C 2 C G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C C 2 N4 ? ? ? 1_555 C G 15 O6 ? ? C C 2 C G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C C 2 O2 ? ? ? 1_555 C G 15 N2 ? ? C C 2 C G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C C 3 N3 ? ? ? 1_555 C G 14 N2 ? ? C C 3 C G 14 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog8 hydrog ? ? C C 3 O2 ? ? ? 1_555 C G 14 N1 ? ? C C 3 C G 14 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog9 hydrog ? ? C C 4 N3 ? ? ? 1_555 C G 13 N1 ? ? C C 4 C G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C C 4 N4 ? ? ? 1_555 C G 13 O6 ? ? C C 4 C G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C C 4 O2 ? ? ? 1_555 C G 13 N2 ? ? C C 4 C G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C G 5 N1 ? ? ? 1_555 C C 12 N3 ? ? C G 5 C C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C G 5 N2 ? ? ? 1_555 C C 12 O2 ? ? C G 5 C C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C G 5 O6 ? ? ? 1_555 C C 12 N4 ? ? C G 5 C C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C G 8 N2 ? ? ? 1_555 C G 9 O6 ? ? C G 8 C G 9 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog16 hydrog ? ? D C 1 N3 ? ? ? 1_555 D G 16 N1 ? ? D C 1 D G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? D C 1 N4 ? ? ? 1_555 D G 16 O6 ? ? D C 1 D G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? D C 1 O2 ? ? ? 1_555 D G 16 N2 ? ? D C 1 D G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? D C 2 N3 ? ? ? 1_555 D G 15 N1 ? ? D C 2 D G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? D C 2 N4 ? ? ? 1_555 D G 15 O6 ? ? D C 2 D G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? D C 2 O2 ? ? ? 1_555 D G 15 N2 ? ? D C 2 D G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? D C 3 N3 ? ? ? 1_555 D G 14 N1 ? ? D C 3 D G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? D C 3 N4 ? ? ? 1_555 D G 14 O6 ? ? D C 3 D G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? D C 3 O2 ? ? ? 1_555 D G 14 N2 ? ? D C 3 D G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? D C 4 O2 ? ? ? 1_555 D G 13 N1 ? ? D C 4 D G 13 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog26 hydrog ? ? D G 5 N1 ? ? ? 1_555 D C 12 N3 ? ? D G 5 D C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? D G 5 N2 ? ? ? 1_555 D C 12 O2 ? ? D G 5 D C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? D G 5 O6 ? ? ? 1_555 D C 12 N4 ? ? D G 5 D C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? D G 8 N2 ? ? ? 1_555 D G 9 O6 ? ? D G 8 D G 9 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 12 ? ARG A 16 ? LEU A 4 ARG A 8 A 2 GLN A 55 ? GLU A 61 ? GLN A 47 GLU A 53 A 3 ILE A 44 ? ILE A 52 ? ILE A 36 ILE A 44 A 4 GLY B 21 ? LEU B 26 ? GLY B 13 LEU B 18 A 5 VAL B 66 ? ARG B 70 ? VAL B 58 ARG B 62 B 1 VAL A 69 ? ARG A 70 ? VAL A 61 ARG A 62 B 2 GLY A 21 ? LEU A 24 ? GLY A 13 LEU A 16 B 3 ILE B 44 ? ILE B 52 ? ILE B 36 ILE B 44 B 4 GLN B 55 ? GLU B 61 ? GLN B 47 GLU B 53 B 5 LEU B 12 ? ARG B 17 ? LEU B 4 ARG B 9 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 12 ? N LEU A 4 O ILE A 60 ? O ILE A 52 A 2 3 O GLY A 59 ? O GLY A 51 N LEU A 47 ? N LEU A 39 A 3 4 N ILE A 46 ? N ILE A 38 O ILE B 22 ? O ILE B 14 A 4 5 N SER B 25 ? N SER B 17 O LEU B 67 ? O LEU B 59 B 1 2 O VAL A 69 ? O VAL A 61 N THR A 23 ? N THR A 15 B 2 3 N LEU A 24 ? N LEU A 16 O ILE B 44 ? O ILE B 36 B 3 4 N LEU B 47 ? N LEU B 39 O GLY B 59 ? O GLY B 51 B 4 5 O ALA B 56 ? O ALA B 48 N ARG B 16 ? N ARG B 8 # _database_PDB_matrix.entry_id 4KJI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4KJI _atom_sites.fract_transf_matrix[1][1] 0.011955 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011955 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010611 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 HIS 1 -7 ? ? ? A . n A 1 2 HIS 2 -6 ? ? ? A . n A 1 3 HIS 3 -5 ? ? ? A . n A 1 4 HIS 4 -4 ? ? ? A . n A 1 5 HIS 5 -3 ? ? ? A . n A 1 6 HIS 6 -2 ? ? ? A . n A 1 7 GLY 7 -1 ? ? ? A . n A 1 8 SER 8 0 ? ? ? A . n A 1 9 MET 9 1 ? ? ? A . n A 1 10 GLY 10 2 ? ? ? A . n A 1 11 PHE 11 3 3 PHE PHE A . n A 1 12 LEU 12 4 4 LEU LEU A . n A 1 13 ILE 13 5 5 ILE ILE A . n A 1 14 LEU 14 6 6 LEU LEU A . n A 1 15 SER 15 7 7 SER SER A . n A 1 16 ARG 16 8 8 ARG ARG A . n A 1 17 ARG 17 9 9 ARG ARG A . n A 1 18 GLU 18 10 10 GLU GLU A . n A 1 19 GLY 19 11 11 GLY GLY A . n A 1 20 GLU 20 12 12 GLU GLU A . n A 1 21 GLY 21 13 13 GLY GLY A . n A 1 22 ILE 22 14 14 ILE ILE A . n A 1 23 THR 23 15 15 THR THR A . n A 1 24 LEU 24 16 16 LEU LEU A . n A 1 25 SER 25 17 17 SER SER A . n A 1 26 LEU 26 18 18 LEU LEU A . n A 1 27 LYS 27 19 19 LYS LYS A . n A 1 28 ALA 28 20 20 ALA ALA A . n A 1 29 ASP 29 21 21 ASP ASP A . n A 1 30 TYR 30 22 22 TYR TYR A . n A 1 31 PRO 31 23 23 PRO PRO A . n A 1 32 ALA 32 24 24 ALA ALA A . n A 1 33 GLU 33 25 25 GLU GLU A . n A 1 34 GLU 34 26 26 GLU GLU A . n A 1 35 LEU 35 27 27 LEU LEU A . n A 1 36 ILE 36 28 28 ILE ILE A . n A 1 37 ARG 37 29 29 ARG ARG A . n A 1 38 GLN 38 30 30 GLN GLN A . n A 1 39 LEU 39 31 31 LEU LEU A . n A 1 40 ARG 40 32 32 ARG ARG A . n A 1 41 GLU 41 33 33 GLU GLU A . n A 1 42 GLY 42 34 34 GLY GLY A . n A 1 43 GLY 43 35 35 GLY GLY A . n A 1 44 ILE 44 36 36 ILE ILE A . n A 1 45 ARG 45 37 37 ARG ARG A . n A 1 46 ILE 46 38 38 ILE ILE A . n A 1 47 LEU 47 39 39 LEU LEU A . n A 1 48 VAL 48 40 40 VAL VAL A . n A 1 49 THR 49 41 41 THR THR A . n A 1 50 ASP 50 42 42 ASP ASP A . n A 1 51 ILE 51 43 43 ILE ILE A . n A 1 52 ILE 52 44 44 ILE ILE A . n A 1 53 GLY 53 45 45 GLY GLY A . n A 1 54 ASN 54 46 46 ASN ASN A . n A 1 55 GLN 55 47 47 GLN GLN A . n A 1 56 ALA 56 48 48 ALA ALA A . n A 1 57 ARG 57 49 49 ARG ARG A . n A 1 58 VAL 58 50 50 VAL VAL A . n A 1 59 GLY 59 51 51 GLY GLY A . n A 1 60 ILE 60 52 52 ILE ILE A . n A 1 61 GLU 61 53 53 GLU GLU A . n A 1 62 ALA 62 54 54 ALA ALA A . n A 1 63 PRO 63 55 55 PRO PRO A . n A 1 64 ARG 64 56 56 ARG ARG A . n A 1 65 GLY 65 57 57 GLY GLY A . n A 1 66 VAL 66 58 58 VAL VAL A . n A 1 67 LEU 67 59 59 LEU LEU A . n A 1 68 ILE 68 60 60 ILE ILE A . n A 1 69 VAL 69 61 61 VAL VAL A . n A 1 70 ARG 70 62 62 ARG ARG A . n A 1 71 ASP 71 63 63 ASP ASP A . n A 1 72 GLU 72 64 64 GLU GLU A . n A 1 73 LEU 73 65 65 LEU LEU A . n A 1 74 LYS 74 66 66 LYS LYS A . n A 1 75 THR 75 67 ? ? ? A . n A 1 76 ALA 76 68 ? ? ? A . n A 1 77 PRO 77 69 ? ? ? A . n A 1 78 LYS 78 70 ? ? ? A . n A 1 79 GLY 79 71 ? ? ? A . n B 1 1 HIS 1 -7 ? ? ? B . n B 1 2 HIS 2 -6 ? ? ? B . n B 1 3 HIS 3 -5 ? ? ? B . n B 1 4 HIS 4 -4 ? ? ? B . n B 1 5 HIS 5 -3 ? ? ? B . n B 1 6 HIS 6 -2 ? ? ? B . n B 1 7 GLY 7 -1 ? ? ? B . n B 1 8 SER 8 0 ? ? ? B . n B 1 9 MET 9 1 ? ? ? B . n B 1 10 GLY 10 2 2 GLY GLY B . n B 1 11 PHE 11 3 3 PHE PHE B . n B 1 12 LEU 12 4 4 LEU LEU B . n B 1 13 ILE 13 5 5 ILE ILE B . n B 1 14 LEU 14 6 6 LEU LEU B . n B 1 15 SER 15 7 7 SER SER B . n B 1 16 ARG 16 8 8 ARG ARG B . n B 1 17 ARG 17 9 9 ARG ARG B . n B 1 18 GLU 18 10 10 GLU GLU B . n B 1 19 GLY 19 11 11 GLY GLY B . n B 1 20 GLU 20 12 12 GLU GLU B . n B 1 21 GLY 21 13 13 GLY GLY B . n B 1 22 ILE 22 14 14 ILE ILE B . n B 1 23 THR 23 15 15 THR THR B . n B 1 24 LEU 24 16 16 LEU LEU B . n B 1 25 SER 25 17 17 SER SER B . n B 1 26 LEU 26 18 18 LEU LEU B . n B 1 27 LYS 27 19 19 LYS LYS B . n B 1 28 ALA 28 20 20 ALA ALA B . n B 1 29 ASP 29 21 21 ASP ASP B . n B 1 30 TYR 30 22 22 TYR TYR B . n B 1 31 PRO 31 23 23 PRO PRO B . n B 1 32 ALA 32 24 24 ALA ALA B . n B 1 33 GLU 33 25 25 GLU GLU B . n B 1 34 GLU 34 26 26 GLU GLU B . n B 1 35 LEU 35 27 27 LEU LEU B . n B 1 36 ILE 36 28 28 ILE ILE B . n B 1 37 ARG 37 29 29 ARG ARG B . n B 1 38 GLN 38 30 30 GLN GLN B . n B 1 39 LEU 39 31 31 LEU LEU B . n B 1 40 ARG 40 32 32 ARG ARG B . n B 1 41 GLU 41 33 33 GLU GLU B . n B 1 42 GLY 42 34 34 GLY GLY B . n B 1 43 GLY 43 35 35 GLY GLY B . n B 1 44 ILE 44 36 36 ILE ILE B . n B 1 45 ARG 45 37 37 ARG ARG B . n B 1 46 ILE 46 38 38 ILE ILE B . n B 1 47 LEU 47 39 39 LEU LEU B . n B 1 48 VAL 48 40 40 VAL VAL B . n B 1 49 THR 49 41 41 THR THR B . n B 1 50 ASP 50 42 42 ASP ASP B . n B 1 51 ILE 51 43 43 ILE ILE B . n B 1 52 ILE 52 44 44 ILE ILE B . n B 1 53 GLY 53 45 45 GLY GLY B . n B 1 54 ASN 54 46 46 ASN ASN B . n B 1 55 GLN 55 47 47 GLN GLN B . n B 1 56 ALA 56 48 48 ALA ALA B . n B 1 57 ARG 57 49 49 ARG ARG B . n B 1 58 VAL 58 50 50 VAL VAL B . n B 1 59 GLY 59 51 51 GLY GLY B . n B 1 60 ILE 60 52 52 ILE ILE B . n B 1 61 GLU 61 53 53 GLU GLU B . n B 1 62 ALA 62 54 54 ALA ALA B . n B 1 63 PRO 63 55 55 PRO PRO B . n B 1 64 ARG 64 56 56 ARG ARG B . n B 1 65 GLY 65 57 57 GLY GLY B . n B 1 66 VAL 66 58 58 VAL VAL B . n B 1 67 LEU 67 59 59 LEU LEU B . n B 1 68 ILE 68 60 60 ILE ILE B . n B 1 69 VAL 69 61 61 VAL VAL B . n B 1 70 ARG 70 62 62 ARG ARG B . n B 1 71 ASP 71 63 63 ASP ASP B . n B 1 72 GLU 72 64 64 GLU GLU B . n B 1 73 LEU 73 65 65 LEU LEU B . n B 1 74 LYS 74 66 66 LYS LYS B . n B 1 75 THR 75 67 ? ? ? B . n B 1 76 ALA 76 68 ? ? ? B . n B 1 77 PRO 77 69 ? ? ? B . n B 1 78 LYS 78 70 ? ? ? B . n B 1 79 GLY 79 71 ? ? ? B . n C 2 1 C 1 1 1 C C C . n C 2 2 C 2 2 2 C C C . n C 2 3 C 3 3 3 C C C . n C 2 4 C 4 4 4 C C C . n C 2 5 G 5 5 5 G G C . n C 2 6 A 6 6 6 A A C . n C 2 7 A 7 7 7 A A C . n C 2 8 G 8 8 8 G G C . n C 2 9 G 9 9 9 G G C . n C 2 10 A 10 10 10 A A C . n C 2 11 U 11 11 11 U U C . n C 2 12 C 12 12 12 C C C . n C 2 13 G 13 13 13 G G C . n C 2 14 G 14 14 14 G G C . n C 2 15 G 15 15 15 G G C . n C 2 16 G 16 16 16 G G C . n D 2 1 C 1 1 1 C C D . n D 2 2 C 2 2 2 C C D . n D 2 3 C 3 3 3 C C D . n D 2 4 C 4 4 4 C C D . n D 2 5 G 5 5 5 G G D . n D 2 6 A 6 6 6 A A D . n D 2 7 A 7 7 7 A A D . n D 2 8 G 8 8 8 G G D . n D 2 9 G 9 9 9 G G D . n D 2 10 A 10 10 10 A A D . n D 2 11 U 11 11 11 U U D . n D 2 12 C 12 12 12 C C D . n D 2 13 G 13 13 13 G G D . n D 2 14 G 14 14 14 G G D . n D 2 15 G 15 15 15 G G D . n D 2 16 G 16 16 16 G G D . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-09-04 2 'Structure model' 1 1 2013-09-25 3 'Structure model' 1 2 2017-11-15 4 'Structure model' 1 3 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DNA 'data collection' . ? 1 REFMAC refinement 5.6.0117 ? 2 MOSFLM 'data reduction' . ? 3 SCALA 'data scaling' . ? 4 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" C G 15 ? ? P C G 16 ? ? 1.476 1.607 -0.131 0.012 Y 2 1 "O4'" D G 14 ? ? "C4'" D G 14 ? ? 1.530 1.454 0.076 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ILE 28 ? ? CA A ILE 28 ? ? C A ILE 28 ? ? 96.72 111.60 -14.88 2.00 N 2 1 CB A THR 41 ? ? CA A THR 41 ? ? C A THR 41 ? ? 91.63 111.60 -19.97 2.70 N 3 1 N A THR 41 ? ? CA A THR 41 ? ? C A THR 41 ? ? 127.78 111.00 16.78 2.70 N 4 1 C B ALA 54 ? ? N B PRO 55 ? ? CA B PRO 55 ? ? 129.06 119.30 9.76 1.50 Y 5 1 NE B ARG 56 ? ? CZ B ARG 56 ? ? NH2 B ARG 56 ? ? 117.00 120.30 -3.30 0.50 N 6 1 "C3'" D C 3 ? ? "O3'" D C 3 ? ? P D C 4 ? ? 108.34 119.70 -11.36 1.20 Y 7 1 "O3'" D C 3 ? ? P D C 4 ? ? OP2 D C 4 ? ? 117.21 110.50 6.71 1.10 Y 8 1 "C3'" D C 4 ? ? "O3'" D C 4 ? ? P D G 5 ? ? 129.20 119.70 9.50 1.20 Y 9 1 "O3'" D C 4 ? ? P D G 5 ? ? "O5'" D G 5 ? ? 91.73 104.00 -12.27 1.90 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 28 ? ? -32.38 -38.20 2 1 GLU A 33 ? ? -95.33 -68.83 3 1 VAL A 40 ? ? -100.97 64.60 4 1 THR A 41 ? ? -36.66 -32.60 5 1 ASP A 42 ? ? -171.82 136.20 6 1 PRO A 55 ? ? -40.42 153.82 7 1 LEU A 65 ? ? -102.62 43.00 8 1 PRO B 55 ? ? -34.60 135.99 9 1 ARG B 56 ? ? -49.79 -19.33 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS -7 ? A HIS 1 2 1 Y 1 A HIS -6 ? A HIS 2 3 1 Y 1 A HIS -5 ? A HIS 3 4 1 Y 1 A HIS -4 ? A HIS 4 5 1 Y 1 A HIS -3 ? A HIS 5 6 1 Y 1 A HIS -2 ? A HIS 6 7 1 Y 1 A GLY -1 ? A GLY 7 8 1 Y 1 A SER 0 ? A SER 8 9 1 Y 1 A MET 1 ? A MET 9 10 1 Y 1 A GLY 2 ? A GLY 10 11 1 Y 1 A THR 67 ? A THR 75 12 1 Y 1 A ALA 68 ? A ALA 76 13 1 Y 1 A PRO 69 ? A PRO 77 14 1 Y 1 A LYS 70 ? A LYS 78 15 1 Y 1 A GLY 71 ? A GLY 79 16 1 Y 1 B HIS -7 ? B HIS 1 17 1 Y 1 B HIS -6 ? B HIS 2 18 1 Y 1 B HIS -5 ? B HIS 3 19 1 Y 1 B HIS -4 ? B HIS 4 20 1 Y 1 B HIS -3 ? B HIS 5 21 1 Y 1 B HIS -2 ? B HIS 6 22 1 Y 1 B GLY -1 ? B GLY 7 23 1 Y 1 B SER 0 ? B SER 8 24 1 Y 1 B MET 1 ? B MET 9 25 1 Y 1 B THR 67 ? B THR 75 26 1 Y 1 B ALA 68 ? B ALA 76 27 1 Y 1 B PRO 69 ? B PRO 77 28 1 Y 1 B LYS 70 ? B LYS 78 29 1 Y 1 B GLY 71 ? B GLY 79 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 G OP3 O N N 146 G P P N N 147 G OP1 O N N 148 G OP2 O N N 149 G "O5'" O N N 150 G "C5'" C N N 151 G "C4'" C N R 152 G "O4'" O N N 153 G "C3'" C N S 154 G "O3'" O N N 155 G "C2'" C N R 156 G "O2'" O N N 157 G "C1'" C N R 158 G N9 N Y N 159 G C8 C Y N 160 G N7 N Y N 161 G C5 C Y N 162 G C6 C N N 163 G O6 O N N 164 G N1 N N N 165 G C2 C N N 166 G N2 N N N 167 G N3 N N N 168 G C4 C Y N 169 G HOP3 H N N 170 G HOP2 H N N 171 G "H5'" H N N 172 G "H5''" H N N 173 G "H4'" H N N 174 G "H3'" H N N 175 G "HO3'" H N N 176 G "H2'" H N N 177 G "HO2'" H N N 178 G "H1'" H N N 179 G H8 H N N 180 G H1 H N N 181 G H21 H N N 182 G H22 H N N 183 GLN N N N N 184 GLN CA C N S 185 GLN C C N N 186 GLN O O N N 187 GLN CB C N N 188 GLN CG C N N 189 GLN CD C N N 190 GLN OE1 O N N 191 GLN NE2 N N N 192 GLN OXT O N N 193 GLN H H N N 194 GLN H2 H N N 195 GLN HA H N N 196 GLN HB2 H N N 197 GLN HB3 H N N 198 GLN HG2 H N N 199 GLN HG3 H N N 200 GLN HE21 H N N 201 GLN HE22 H N N 202 GLN HXT H N N 203 GLU N N N N 204 GLU CA C N S 205 GLU C C N N 206 GLU O O N N 207 GLU CB C N N 208 GLU CG C N N 209 GLU CD C N N 210 GLU OE1 O N N 211 GLU OE2 O N N 212 GLU OXT O N N 213 GLU H H N N 214 GLU H2 H N N 215 GLU HA H N N 216 GLU HB2 H N N 217 GLU HB3 H N N 218 GLU HG2 H N N 219 GLU HG3 H N N 220 GLU HE2 H N N 221 GLU HXT H N N 222 GLY N N N N 223 GLY CA C N N 224 GLY C C N N 225 GLY O O N N 226 GLY OXT O N N 227 GLY H H N N 228 GLY H2 H N N 229 GLY HA2 H N N 230 GLY HA3 H N N 231 GLY HXT H N N 232 HIS N N N N 233 HIS CA C N S 234 HIS C C N N 235 HIS O O N N 236 HIS CB C N N 237 HIS CG C Y N 238 HIS ND1 N Y N 239 HIS CD2 C Y N 240 HIS CE1 C Y N 241 HIS NE2 N Y N 242 HIS OXT O N N 243 HIS H H N N 244 HIS H2 H N N 245 HIS HA H N N 246 HIS HB2 H N N 247 HIS HB3 H N N 248 HIS HD1 H N N 249 HIS HD2 H N N 250 HIS HE1 H N N 251 HIS HE2 H N N 252 HIS HXT H N N 253 ILE N N N N 254 ILE CA C N S 255 ILE C C N N 256 ILE O O N N 257 ILE CB C N S 258 ILE CG1 C N N 259 ILE CG2 C N N 260 ILE CD1 C N N 261 ILE OXT O N N 262 ILE H H N N 263 ILE H2 H N N 264 ILE HA H N N 265 ILE HB H N N 266 ILE HG12 H N N 267 ILE HG13 H N N 268 ILE HG21 H N N 269 ILE HG22 H N N 270 ILE HG23 H N N 271 ILE HD11 H N N 272 ILE HD12 H N N 273 ILE HD13 H N N 274 ILE HXT H N N 275 LEU N N N N 276 LEU CA C N S 277 LEU C C N N 278 LEU O O N N 279 LEU CB C N N 280 LEU CG C N N 281 LEU CD1 C N N 282 LEU CD2 C N N 283 LEU OXT O N N 284 LEU H H N N 285 LEU H2 H N N 286 LEU HA H N N 287 LEU HB2 H N N 288 LEU HB3 H N N 289 LEU HG H N N 290 LEU HD11 H N N 291 LEU HD12 H N N 292 LEU HD13 H N N 293 LEU HD21 H N N 294 LEU HD22 H N N 295 LEU HD23 H N N 296 LEU HXT H N N 297 LYS N N N N 298 LYS CA C N S 299 LYS C C N N 300 LYS O O N N 301 LYS CB C N N 302 LYS CG C N N 303 LYS CD C N N 304 LYS CE C N N 305 LYS NZ N N N 306 LYS OXT O N N 307 LYS H H N N 308 LYS H2 H N N 309 LYS HA H N N 310 LYS HB2 H N N 311 LYS HB3 H N N 312 LYS HG2 H N N 313 LYS HG3 H N N 314 LYS HD2 H N N 315 LYS HD3 H N N 316 LYS HE2 H N N 317 LYS HE3 H N N 318 LYS HZ1 H N N 319 LYS HZ2 H N N 320 LYS HZ3 H N N 321 LYS HXT H N N 322 MET N N N N 323 MET CA C N S 324 MET C C N N 325 MET O O N N 326 MET CB C N N 327 MET CG C N N 328 MET SD S N N 329 MET CE C N N 330 MET OXT O N N 331 MET H H N N 332 MET H2 H N N 333 MET HA H N N 334 MET HB2 H N N 335 MET HB3 H N N 336 MET HG2 H N N 337 MET HG3 H N N 338 MET HE1 H N N 339 MET HE2 H N N 340 MET HE3 H N N 341 MET HXT H N N 342 PHE N N N N 343 PHE CA C N S 344 PHE C C N N 345 PHE O O N N 346 PHE CB C N N 347 PHE CG C Y N 348 PHE CD1 C Y N 349 PHE CD2 C Y N 350 PHE CE1 C Y N 351 PHE CE2 C Y N 352 PHE CZ C Y N 353 PHE OXT O N N 354 PHE H H N N 355 PHE H2 H N N 356 PHE HA H N N 357 PHE HB2 H N N 358 PHE HB3 H N N 359 PHE HD1 H N N 360 PHE HD2 H N N 361 PHE HE1 H N N 362 PHE HE2 H N N 363 PHE HZ H N N 364 PHE HXT H N N 365 PRO N N N N 366 PRO CA C N S 367 PRO C C N N 368 PRO O O N N 369 PRO CB C N N 370 PRO CG C N N 371 PRO CD C N N 372 PRO OXT O N N 373 PRO H H N N 374 PRO HA H N N 375 PRO HB2 H N N 376 PRO HB3 H N N 377 PRO HG2 H N N 378 PRO HG3 H N N 379 PRO HD2 H N N 380 PRO HD3 H N N 381 PRO HXT H N N 382 SER N N N N 383 SER CA C N S 384 SER C C N N 385 SER O O N N 386 SER CB C N N 387 SER OG O N N 388 SER OXT O N N 389 SER H H N N 390 SER H2 H N N 391 SER HA H N N 392 SER HB2 H N N 393 SER HB3 H N N 394 SER HG H N N 395 SER HXT H N N 396 THR N N N N 397 THR CA C N S 398 THR C C N N 399 THR O O N N 400 THR CB C N R 401 THR OG1 O N N 402 THR CG2 C N N 403 THR OXT O N N 404 THR H H N N 405 THR H2 H N N 406 THR HA H N N 407 THR HB H N N 408 THR HG1 H N N 409 THR HG21 H N N 410 THR HG22 H N N 411 THR HG23 H N N 412 THR HXT H N N 413 TYR N N N N 414 TYR CA C N S 415 TYR C C N N 416 TYR O O N N 417 TYR CB C N N 418 TYR CG C Y N 419 TYR CD1 C Y N 420 TYR CD2 C Y N 421 TYR CE1 C Y N 422 TYR CE2 C Y N 423 TYR CZ C Y N 424 TYR OH O N N 425 TYR OXT O N N 426 TYR H H N N 427 TYR H2 H N N 428 TYR HA H N N 429 TYR HB2 H N N 430 TYR HB3 H N N 431 TYR HD1 H N N 432 TYR HD2 H N N 433 TYR HE1 H N N 434 TYR HE2 H N N 435 TYR HH H N N 436 TYR HXT H N N 437 U OP3 O N N 438 U P P N N 439 U OP1 O N N 440 U OP2 O N N 441 U "O5'" O N N 442 U "C5'" C N N 443 U "C4'" C N R 444 U "O4'" O N N 445 U "C3'" C N S 446 U "O3'" O N N 447 U "C2'" C N R 448 U "O2'" O N N 449 U "C1'" C N R 450 U N1 N N N 451 U C2 C N N 452 U O2 O N N 453 U N3 N N N 454 U C4 C N N 455 U O4 O N N 456 U C5 C N N 457 U C6 C N N 458 U HOP3 H N N 459 U HOP2 H N N 460 U "H5'" H N N 461 U "H5''" H N N 462 U "H4'" H N N 463 U "H3'" H N N 464 U "HO3'" H N N 465 U "H2'" H N N 466 U "HO2'" H N N 467 U "H1'" H N N 468 U H3 H N N 469 U H5 H N N 470 U H6 H N N 471 VAL N N N N 472 VAL CA C N S 473 VAL C C N N 474 VAL O O N N 475 VAL CB C N N 476 VAL CG1 C N N 477 VAL CG2 C N N 478 VAL OXT O N N 479 VAL H H N N 480 VAL H2 H N N 481 VAL HA H N N 482 VAL HB H N N 483 VAL HG11 H N N 484 VAL HG12 H N N 485 VAL HG13 H N N 486 VAL HG21 H N N 487 VAL HG22 H N N 488 VAL HG23 H N N 489 VAL HXT H N N 490 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 G OP3 P sing N N 145 G OP3 HOP3 sing N N 146 G P OP1 doub N N 147 G P OP2 sing N N 148 G P "O5'" sing N N 149 G OP2 HOP2 sing N N 150 G "O5'" "C5'" sing N N 151 G "C5'" "C4'" sing N N 152 G "C5'" "H5'" sing N N 153 G "C5'" "H5''" sing N N 154 G "C4'" "O4'" sing N N 155 G "C4'" "C3'" sing N N 156 G "C4'" "H4'" sing N N 157 G "O4'" "C1'" sing N N 158 G "C3'" "O3'" sing N N 159 G "C3'" "C2'" sing N N 160 G "C3'" "H3'" sing N N 161 G "O3'" "HO3'" sing N N 162 G "C2'" "O2'" sing N N 163 G "C2'" "C1'" sing N N 164 G "C2'" "H2'" sing N N 165 G "O2'" "HO2'" sing N N 166 G "C1'" N9 sing N N 167 G "C1'" "H1'" sing N N 168 G N9 C8 sing Y N 169 G N9 C4 sing Y N 170 G C8 N7 doub Y N 171 G C8 H8 sing N N 172 G N7 C5 sing Y N 173 G C5 C6 sing N N 174 G C5 C4 doub Y N 175 G C6 O6 doub N N 176 G C6 N1 sing N N 177 G N1 C2 sing N N 178 G N1 H1 sing N N 179 G C2 N2 sing N N 180 G C2 N3 doub N N 181 G N2 H21 sing N N 182 G N2 H22 sing N N 183 G N3 C4 sing N N 184 GLN N CA sing N N 185 GLN N H sing N N 186 GLN N H2 sing N N 187 GLN CA C sing N N 188 GLN CA CB sing N N 189 GLN CA HA sing N N 190 GLN C O doub N N 191 GLN C OXT sing N N 192 GLN CB CG sing N N 193 GLN CB HB2 sing N N 194 GLN CB HB3 sing N N 195 GLN CG CD sing N N 196 GLN CG HG2 sing N N 197 GLN CG HG3 sing N N 198 GLN CD OE1 doub N N 199 GLN CD NE2 sing N N 200 GLN NE2 HE21 sing N N 201 GLN NE2 HE22 sing N N 202 GLN OXT HXT sing N N 203 GLU N CA sing N N 204 GLU N H sing N N 205 GLU N H2 sing N N 206 GLU CA C sing N N 207 GLU CA CB sing N N 208 GLU CA HA sing N N 209 GLU C O doub N N 210 GLU C OXT sing N N 211 GLU CB CG sing N N 212 GLU CB HB2 sing N N 213 GLU CB HB3 sing N N 214 GLU CG CD sing N N 215 GLU CG HG2 sing N N 216 GLU CG HG3 sing N N 217 GLU CD OE1 doub N N 218 GLU CD OE2 sing N N 219 GLU OE2 HE2 sing N N 220 GLU OXT HXT sing N N 221 GLY N CA sing N N 222 GLY N H sing N N 223 GLY N H2 sing N N 224 GLY CA C sing N N 225 GLY CA HA2 sing N N 226 GLY CA HA3 sing N N 227 GLY C O doub N N 228 GLY C OXT sing N N 229 GLY OXT HXT sing N N 230 HIS N CA sing N N 231 HIS N H sing N N 232 HIS N H2 sing N N 233 HIS CA C sing N N 234 HIS CA CB sing N N 235 HIS CA HA sing N N 236 HIS C O doub N N 237 HIS C OXT sing N N 238 HIS CB CG sing N N 239 HIS CB HB2 sing N N 240 HIS CB HB3 sing N N 241 HIS CG ND1 sing Y N 242 HIS CG CD2 doub Y N 243 HIS ND1 CE1 doub Y N 244 HIS ND1 HD1 sing N N 245 HIS CD2 NE2 sing Y N 246 HIS CD2 HD2 sing N N 247 HIS CE1 NE2 sing Y N 248 HIS CE1 HE1 sing N N 249 HIS NE2 HE2 sing N N 250 HIS OXT HXT sing N N 251 ILE N CA sing N N 252 ILE N H sing N N 253 ILE N H2 sing N N 254 ILE CA C sing N N 255 ILE CA CB sing N N 256 ILE CA HA sing N N 257 ILE C O doub N N 258 ILE C OXT sing N N 259 ILE CB CG1 sing N N 260 ILE CB CG2 sing N N 261 ILE CB HB sing N N 262 ILE CG1 CD1 sing N N 263 ILE CG1 HG12 sing N N 264 ILE CG1 HG13 sing N N 265 ILE CG2 HG21 sing N N 266 ILE CG2 HG22 sing N N 267 ILE CG2 HG23 sing N N 268 ILE CD1 HD11 sing N N 269 ILE CD1 HD12 sing N N 270 ILE CD1 HD13 sing N N 271 ILE OXT HXT sing N N 272 LEU N CA sing N N 273 LEU N H sing N N 274 LEU N H2 sing N N 275 LEU CA C sing N N 276 LEU CA CB sing N N 277 LEU CA HA sing N N 278 LEU C O doub N N 279 LEU C OXT sing N N 280 LEU CB CG sing N N 281 LEU CB HB2 sing N N 282 LEU CB HB3 sing N N 283 LEU CG CD1 sing N N 284 LEU CG CD2 sing N N 285 LEU CG HG sing N N 286 LEU CD1 HD11 sing N N 287 LEU CD1 HD12 sing N N 288 LEU CD1 HD13 sing N N 289 LEU CD2 HD21 sing N N 290 LEU CD2 HD22 sing N N 291 LEU CD2 HD23 sing N N 292 LEU OXT HXT sing N N 293 LYS N CA sing N N 294 LYS N H sing N N 295 LYS N H2 sing N N 296 LYS CA C sing N N 297 LYS CA CB sing N N 298 LYS CA HA sing N N 299 LYS C O doub N N 300 LYS C OXT sing N N 301 LYS CB CG sing N N 302 LYS CB HB2 sing N N 303 LYS CB HB3 sing N N 304 LYS CG CD sing N N 305 LYS CG HG2 sing N N 306 LYS CG HG3 sing N N 307 LYS CD CE sing N N 308 LYS CD HD2 sing N N 309 LYS CD HD3 sing N N 310 LYS CE NZ sing N N 311 LYS CE HE2 sing N N 312 LYS CE HE3 sing N N 313 LYS NZ HZ1 sing N N 314 LYS NZ HZ2 sing N N 315 LYS NZ HZ3 sing N N 316 LYS OXT HXT sing N N 317 MET N CA sing N N 318 MET N H sing N N 319 MET N H2 sing N N 320 MET CA C sing N N 321 MET CA CB sing N N 322 MET CA HA sing N N 323 MET C O doub N N 324 MET C OXT sing N N 325 MET CB CG sing N N 326 MET CB HB2 sing N N 327 MET CB HB3 sing N N 328 MET CG SD sing N N 329 MET CG HG2 sing N N 330 MET CG HG3 sing N N 331 MET SD CE sing N N 332 MET CE HE1 sing N N 333 MET CE HE2 sing N N 334 MET CE HE3 sing N N 335 MET OXT HXT sing N N 336 PHE N CA sing N N 337 PHE N H sing N N 338 PHE N H2 sing N N 339 PHE CA C sing N N 340 PHE CA CB sing N N 341 PHE CA HA sing N N 342 PHE C O doub N N 343 PHE C OXT sing N N 344 PHE CB CG sing N N 345 PHE CB HB2 sing N N 346 PHE CB HB3 sing N N 347 PHE CG CD1 doub Y N 348 PHE CG CD2 sing Y N 349 PHE CD1 CE1 sing Y N 350 PHE CD1 HD1 sing N N 351 PHE CD2 CE2 doub Y N 352 PHE CD2 HD2 sing N N 353 PHE CE1 CZ doub Y N 354 PHE CE1 HE1 sing N N 355 PHE CE2 CZ sing Y N 356 PHE CE2 HE2 sing N N 357 PHE CZ HZ sing N N 358 PHE OXT HXT sing N N 359 PRO N CA sing N N 360 PRO N CD sing N N 361 PRO N H sing N N 362 PRO CA C sing N N 363 PRO CA CB sing N N 364 PRO CA HA sing N N 365 PRO C O doub N N 366 PRO C OXT sing N N 367 PRO CB CG sing N N 368 PRO CB HB2 sing N N 369 PRO CB HB3 sing N N 370 PRO CG CD sing N N 371 PRO CG HG2 sing N N 372 PRO CG HG3 sing N N 373 PRO CD HD2 sing N N 374 PRO CD HD3 sing N N 375 PRO OXT HXT sing N N 376 SER N CA sing N N 377 SER N H sing N N 378 SER N H2 sing N N 379 SER CA C sing N N 380 SER CA CB sing N N 381 SER CA HA sing N N 382 SER C O doub N N 383 SER C OXT sing N N 384 SER CB OG sing N N 385 SER CB HB2 sing N N 386 SER CB HB3 sing N N 387 SER OG HG sing N N 388 SER OXT HXT sing N N 389 THR N CA sing N N 390 THR N H sing N N 391 THR N H2 sing N N 392 THR CA C sing N N 393 THR CA CB sing N N 394 THR CA HA sing N N 395 THR C O doub N N 396 THR C OXT sing N N 397 THR CB OG1 sing N N 398 THR CB CG2 sing N N 399 THR CB HB sing N N 400 THR OG1 HG1 sing N N 401 THR CG2 HG21 sing N N 402 THR CG2 HG22 sing N N 403 THR CG2 HG23 sing N N 404 THR OXT HXT sing N N 405 TYR N CA sing N N 406 TYR N H sing N N 407 TYR N H2 sing N N 408 TYR CA C sing N N 409 TYR CA CB sing N N 410 TYR CA HA sing N N 411 TYR C O doub N N 412 TYR C OXT sing N N 413 TYR CB CG sing N N 414 TYR CB HB2 sing N N 415 TYR CB HB3 sing N N 416 TYR CG CD1 doub Y N 417 TYR CG CD2 sing Y N 418 TYR CD1 CE1 sing Y N 419 TYR CD1 HD1 sing N N 420 TYR CD2 CE2 doub Y N 421 TYR CD2 HD2 sing N N 422 TYR CE1 CZ doub Y N 423 TYR CE1 HE1 sing N N 424 TYR CE2 CZ sing Y N 425 TYR CE2 HE2 sing N N 426 TYR CZ OH sing N N 427 TYR OH HH sing N N 428 TYR OXT HXT sing N N 429 U OP3 P sing N N 430 U OP3 HOP3 sing N N 431 U P OP1 doub N N 432 U P OP2 sing N N 433 U P "O5'" sing N N 434 U OP2 HOP2 sing N N 435 U "O5'" "C5'" sing N N 436 U "C5'" "C4'" sing N N 437 U "C5'" "H5'" sing N N 438 U "C5'" "H5''" sing N N 439 U "C4'" "O4'" sing N N 440 U "C4'" "C3'" sing N N 441 U "C4'" "H4'" sing N N 442 U "O4'" "C1'" sing N N 443 U "C3'" "O3'" sing N N 444 U "C3'" "C2'" sing N N 445 U "C3'" "H3'" sing N N 446 U "O3'" "HO3'" sing N N 447 U "C2'" "O2'" sing N N 448 U "C2'" "C1'" sing N N 449 U "C2'" "H2'" sing N N 450 U "O2'" "HO2'" sing N N 451 U "C1'" N1 sing N N 452 U "C1'" "H1'" sing N N 453 U N1 C2 sing N N 454 U N1 C6 sing N N 455 U C2 O2 doub N N 456 U C2 N3 sing N N 457 U N3 C4 sing N N 458 U N3 H3 sing N N 459 U C4 O4 doub N N 460 U C4 C5 sing N N 461 U C5 C6 doub N N 462 U C5 H5 sing N N 463 U C6 H6 sing N N 464 VAL N CA sing N N 465 VAL N H sing N N 466 VAL N H2 sing N N 467 VAL CA C sing N N 468 VAL CA CB sing N N 469 VAL CA HA sing N N 470 VAL C O doub N N 471 VAL C OXT sing N N 472 VAL CB CG1 sing N N 473 VAL CB CG2 sing N N 474 VAL CB HB sing N N 475 VAL CG1 HG11 sing N N 476 VAL CG1 HG12 sing N N 477 VAL CG1 HG13 sing N N 478 VAL CG2 HG21 sing N N 479 VAL CG2 HG22 sing N N 480 VAL CG2 HG23 sing N N 481 VAL OXT HXT sing N N 482 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4KJI 'double helix' 4KJI 'a-form double helix' 4KJI 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C C 1 1_555 C G 16 1_555 -0.661 -0.149 0.532 0.658 -12.052 -14.140 1 C_C1:G16_C C 1 ? C 16 ? 19 1 1 C C 2 1_555 C G 15 1_555 -1.137 -0.250 0.193 1.465 -9.288 -12.278 2 C_C2:G15_C C 2 ? C 15 ? 19 1 1 C C 3 1_555 C G 14 1_555 -0.114 0.061 -0.335 6.545 -5.935 7.534 3 C_C3:G14_C C 3 ? C 14 ? 19 1 1 C C 4 1_555 C G 13 1_555 0.930 -0.435 -0.294 5.751 -3.476 4.608 4 C_C4:G13_C C 4 ? C 13 ? 19 1 1 C G 5 1_555 C C 12 1_555 -0.183 -0.346 0.428 -4.136 -10.487 4.070 5 C_G5:C12_C C 5 ? C 12 ? 19 1 1 C G 8 1_555 C G 9 1_555 6.352 2.821 -1.473 -5.099 56.501 0.933 6 C_G8:G9_C C 8 ? C 9 ? ? 9 1 D C 1 1_555 D G 16 1_555 -0.605 -0.068 0.306 6.134 -0.957 -10.743 7 D_C1:G16_D D 1 ? D 16 ? 19 1 1 D C 2 1_555 D G 15 1_555 -1.007 -0.429 0.375 11.597 -17.831 0.123 8 D_C2:G15_D D 2 ? D 15 ? 19 1 1 D C 3 1_555 D G 14 1_555 -1.539 -0.731 0.247 8.957 7.723 -2.743 9 D_C3:G14_D D 3 ? D 14 ? 19 1 1 D C 4 1_555 D G 13 1_555 1.879 -0.430 -0.244 0.630 4.938 8.370 10 D_C4:G13_D D 4 ? D 13 ? ? 1 1 D G 5 1_555 D C 12 1_555 -0.700 -0.409 -0.528 -23.890 -25.148 -0.559 11 D_G5:C12_D D 5 ? D 12 ? 19 1 1 D G 8 1_555 D G 9 1_555 6.110 2.548 -0.860 -1.458 42.729 -2.420 12 D_G8:G9_D D 8 ? D 9 ? ? 9 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C C 1 1_555 C G 16 1_555 C C 2 1_555 C G 15 1_555 0.060 -2.596 3.226 -1.686 6.544 30.684 -5.908 -0.396 2.623 12.182 3.138 31.402 1 CC_C1C2:G15G16_CC C 1 ? C 16 ? C 2 ? C 15 ? 1 C C 2 1_555 C G 15 1_555 C C 3 1_555 C G 14 1_555 0.881 -1.964 3.012 1.391 1.165 35.136 -3.408 -1.267 2.979 1.928 -2.302 35.181 2 CC_C2C3:G14G15_CC C 2 ? C 15 ? C 3 ? C 14 ? 1 C C 3 1_555 C G 14 1_555 C C 4 1_555 C G 13 1_555 0.177 -1.792 3.699 2.758 -2.154 33.317 -2.701 0.216 3.806 -3.744 -4.794 33.496 3 CC_C3C4:G13G14_CC C 3 ? C 14 ? C 4 ? C 13 ? 1 C C 4 1_555 C G 13 1_555 C G 5 1_555 C C 12 1_555 0.776 -2.476 3.363 -1.714 5.537 21.009 -8.557 -2.675 2.562 14.824 4.589 21.785 4 CC_C4G5:C12G13_CC C 4 ? C 13 ? C 5 ? C 12 ? 1 D C 1 1_555 D G 16 1_555 D C 2 1_555 D G 15 1_555 0.801 -2.262 3.334 6.470 1.920 23.611 -5.930 0.164 3.243 4.575 -15.413 24.544 5 DD_C1C2:G15G16_DD D 1 ? D 16 ? D 2 ? D 15 ? 1 D C 2 1_555 D G 15 1_555 D C 3 1_555 D G 14 1_555 0.713 -2.403 3.209 -4.118 4.022 32.835 -4.809 -1.877 2.796 7.048 7.216 33.322 6 DD_C2C3:G14G15_DD D 2 ? D 15 ? D 3 ? D 14 ? 1 D C 3 1_555 D G 14 1_555 D C 4 1_555 D G 13 1_555 1.012 -1.674 3.541 10.751 12.842 45.862 -3.071 -0.357 3.142 15.870 -13.286 48.669 7 DD_C3C4:G13G14_DD D 3 ? D 14 ? D 4 ? D 13 ? 1 D C 4 1_555 D G 13 1_555 D G 5 1_555 D C 12 1_555 0.120 -2.229 4.055 4.209 2.847 14.862 -10.709 3.333 3.470 10.611 -15.684 15.702 8 DD_C4G5:C12G13_DD D 4 ? D 13 ? D 5 ? D 12 ? # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.entity_id_list _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code _pdbx_initial_refinement_model.details 1 ? 'experimental model' PDB 1VPZ 'PDB ENTRIES 1vpz for protein and 2JPP for RNA' 2 ? 'experimental model' PDB 2JPP 'PDB ENTRIES 1vpz for protein and 2JPP for RNA' #