HEADER IMMUNE SYSTEM 04-MAY-13 4KJY TITLE COMPLEX OF HIGH-AFFINITY SIRP ALPHA VARIANT FD6 WITH CD47 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUKOCYTE SURFACE ANTIGEN CD47; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: ANTIGENIC SURFACE DETERMINANT PROTEIN OA3, INTEGRIN- COMPND 5 ASSOCIATED PROTEIN, IAP, PROTEIN MER6; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HIGH-AFFINITY SIRPA VARIANT FD6; COMPND 10 CHAIN: B, D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD47, MER6; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PACGP67A; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PMAL-P2X KEYWDS IMMUNOGLOBULIN FOLD, IMMUNE REGULATION, N-LINKED GLYCOSYLATION, KEYWDS 2 PLASMA MEMBRANE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.M.RING,E.OZKAN,C.C.M.HO,K.C.GARCIA REVDAT 4 29-JUL-20 4KJY 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 25-DEC-19 4KJY 1 SEQADV SEQRES LINK REVDAT 2 28-AUG-13 4KJY 1 JRNL REVDAT 1 12-JUN-13 4KJY 0 JRNL AUTH K.WEISKOPF,A.M.RING,C.C.HO,J.P.VOLKMER,A.M.LEVIN, JRNL AUTH 2 A.K.VOLKMER,E.OZKAN,N.B.FERNHOFF,M.VAN DE RIJN,I.L.WEISSMAN, JRNL AUTH 3 K.C.GARCIA JRNL TITL ENGINEERED SIRP ALPHA VARIANTS AS IMMUNOTHERAPEUTIC JRNL TITL 2 ADJUVANTS TO ANTICANCER ANTIBODIES. JRNL REF SCIENCE V. 341 88 2013 JRNL REFN ISSN 0036-8075 JRNL PMID 23722425 JRNL DOI 10.1126/SCIENCE.1238856 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.320 REMARK 3 COMPLETENESS FOR RANGE (%) : 78.0 REMARK 3 NUMBER OF REFLECTIONS : 36706 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1476 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.2947 - 4.2829 0.99 4491 190 0.1879 0.2237 REMARK 3 2 4.2829 - 3.4008 1.00 4204 178 0.1787 0.2352 REMARK 3 3 3.4008 - 2.9713 1.00 4143 177 0.2072 0.2402 REMARK 3 4 2.9713 - 2.6998 1.00 4112 172 0.2504 0.3032 REMARK 3 5 2.6998 - 2.5064 1.00 4080 174 0.2620 0.3029 REMARK 3 6 2.5064 - 2.3587 1.00 4026 170 0.2682 0.3195 REMARK 3 7 2.3587 - 2.2406 0.99 3978 171 0.2615 0.3056 REMARK 3 8 2.2406 - 2.1431 0.78 3167 124 0.2839 0.3217 REMARK 3 9 2.1431 - 2.0606 0.44 1783 68 0.2620 0.3448 REMARK 3 10 2.0606 - 1.9895 0.23 927 43 0.2619 0.2910 REMARK 3 11 1.9895 - 1.9300 0.08 319 9 0.3467 0.4077 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3719 REMARK 3 ANGLE : 0.947 5057 REMARK 3 CHIRALITY : 0.059 601 REMARK 3 PLANARITY : 0.004 636 REMARK 3 DIHEDRAL : 12.486 1336 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 27 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 2: 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1572 27.2118 -36.3520 REMARK 3 T TENSOR REMARK 3 T11: 0.8924 T22: 1.1132 REMARK 3 T33: 0.8133 T12: -0.5142 REMARK 3 T13: 0.1603 T23: -0.2117 REMARK 3 L TENSOR REMARK 3 L11: 0.8855 L22: 5.3073 REMARK 3 L33: 4.3854 L12: -0.5389 REMARK 3 L13: -0.6760 L23: -1.1424 REMARK 3 S TENSOR REMARK 3 S11: -0.3403 S12: 0.7237 S13: 0.5788 REMARK 3 S21: -0.9009 S22: 0.2774 S23: -1.4542 REMARK 3 S31: -0.5234 S32: 1.5172 S33: 0.0663 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 22: 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5911 16.5042 -30.8862 REMARK 3 T TENSOR REMARK 3 T11: 0.5409 T22: 0.5911 REMARK 3 T33: 0.3274 T12: -0.0627 REMARK 3 T13: 0.0456 T23: -0.1969 REMARK 3 L TENSOR REMARK 3 L11: 2.6950 L22: 3.1872 REMARK 3 L33: 5.2243 L12: -0.8988 REMARK 3 L13: -0.2534 L23: -0.9765 REMARK 3 S TENSOR REMARK 3 S11: -0.2582 S12: 0.5361 S13: -0.0308 REMARK 3 S21: -0.6071 S22: 0.1466 S23: -0.3743 REMARK 3 S31: 0.1393 S32: 0.9536 S33: 0.1077 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 52: 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7766 6.2863 -27.2751 REMARK 3 T TENSOR REMARK 3 T11: 0.6417 T22: 0.7157 REMARK 3 T33: 0.5246 T12: 0.1780 REMARK 3 T13: 0.1018 T23: -0.2979 REMARK 3 L TENSOR REMARK 3 L11: 2.0001 L22: 8.0513 REMARK 3 L33: 4.9975 L12: -2.0662 REMARK 3 L13: -6.3827 L23: -0.2088 REMARK 3 S TENSOR REMARK 3 S11: -0.4409 S12: -0.5373 S13: -0.5845 REMARK 3 S21: -0.0797 S22: 0.2535 S23: -0.3412 REMARK 3 S31: 0.6003 S32: 1.3369 S33: 0.1914 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 59: 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5668 15.9286 -30.6208 REMARK 3 T TENSOR REMARK 3 T11: 0.5483 T22: 0.9618 REMARK 3 T33: 0.5831 T12: -0.0363 REMARK 3 T13: 0.1474 T23: -0.2982 REMARK 3 L TENSOR REMARK 3 L11: 5.0474 L22: 6.0659 REMARK 3 L33: 1.5452 L12: -1.2532 REMARK 3 L13: -1.1771 L23: -1.1586 REMARK 3 S TENSOR REMARK 3 S11: -0.0373 S12: -0.1106 S13: 0.2495 REMARK 3 S21: -0.5236 S22: 0.1534 S23: -0.9089 REMARK 3 S31: 0.1992 S32: 1.4109 S33: -0.1261 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 80: 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0067 18.1325 -41.4106 REMARK 3 T TENSOR REMARK 3 T11: 1.0710 T22: 1.5607 REMARK 3 T33: 0.9582 T12: -0.2613 REMARK 3 T13: 0.3971 T23: -0.3636 REMARK 3 L TENSOR REMARK 3 L11: 2.0001 L22: 2.0209 REMARK 3 L33: 7.5874 L12: -0.1719 REMARK 3 L13: -6.8535 L23: -1.8032 REMARK 3 S TENSOR REMARK 3 S11: -0.5793 S12: -0.7610 S13: -0.3496 REMARK 3 S21: -1.0120 S22: 0.0318 S23: -1.0139 REMARK 3 S31: 0.7498 S32: 1.2136 S33: 0.5490 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESID 93:102 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2741 18.4228 -34.1025 REMARK 3 T TENSOR REMARK 3 T11: 0.6033 T22: 0.4839 REMARK 3 T33: 0.2860 T12: -0.1593 REMARK 3 T13: 0.0726 T23: -0.1994 REMARK 3 L TENSOR REMARK 3 L11: 7.1157 L22: 4.4801 REMARK 3 L33: 8.8195 L12: -0.0494 REMARK 3 L13: -6.4948 L23: 2.0988 REMARK 3 S TENSOR REMARK 3 S11: -0.0350 S12: 0.6833 S13: 0.3703 REMARK 3 S21: -0.8937 S22: 0.5114 S23: -0.5740 REMARK 3 S31: -0.8450 S32: 0.4909 S33: -0.4957 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESID 103:114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0344 24.3584 -39.1927 REMARK 3 T TENSOR REMARK 3 T11: 0.7887 T22: 0.6405 REMARK 3 T33: 0.4172 T12: -0.3854 REMARK 3 T13: 0.1158 T23: -0.1717 REMARK 3 L TENSOR REMARK 3 L11: 4.0125 L22: 2.4014 REMARK 3 L33: 0.1944 L12: 1.4354 REMARK 3 L13: 0.8184 L23: 0.0691 REMARK 3 S TENSOR REMARK 3 S11: -0.2968 S12: 0.7030 S13: 0.2497 REMARK 3 S21: -0.7627 S22: 0.2812 S23: -0.6041 REMARK 3 S31: -0.4688 S32: 0.6793 S33: -0.0118 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESID 1: 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.2526 14.0639 -34.4543 REMARK 3 T TENSOR REMARK 3 T11: 0.4665 T22: 0.5425 REMARK 3 T33: 0.2871 T12: -0.2874 REMARK 3 T13: 0.1121 T23: -0.1782 REMARK 3 L TENSOR REMARK 3 L11: 7.2592 L22: 6.2446 REMARK 3 L33: 2.5975 L12: 0.9438 REMARK 3 L13: 0.8814 L23: 0.0913 REMARK 3 S TENSOR REMARK 3 S11: 0.1744 S12: 0.0441 S13: -0.8075 REMARK 3 S21: -0.1330 S22: 0.1756 S23: 0.8953 REMARK 3 S31: 0.3979 S32: -0.7904 S33: -0.3694 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESID 24: 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.4453 15.6405 -37.5029 REMARK 3 T TENSOR REMARK 3 T11: 0.4500 T22: 0.1957 REMARK 3 T33: 0.1598 T12: -0.1591 REMARK 3 T13: 0.0890 T23: -0.0876 REMARK 3 L TENSOR REMARK 3 L11: 2.1562 L22: 2.4157 REMARK 3 L33: 3.7038 L12: -0.6086 REMARK 3 L13: 0.9349 L23: 1.4365 REMARK 3 S TENSOR REMARK 3 S11: 0.0454 S12: 0.2922 S13: -0.0279 REMARK 3 S21: -0.1539 S22: -0.0304 S23: 0.0234 REMARK 3 S31: -0.0178 S32: -0.0902 S33: -0.0160 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND (RESID 63: 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.3124 21.5323 -34.5484 REMARK 3 T TENSOR REMARK 3 T11: 0.3900 T22: 0.2728 REMARK 3 T33: 0.1978 T12: -0.0094 REMARK 3 T13: 0.0745 T23: -0.1292 REMARK 3 L TENSOR REMARK 3 L11: 9.1476 L22: 4.5172 REMARK 3 L33: 7.2070 L12: 0.0944 REMARK 3 L13: 5.2569 L23: -0.0820 REMARK 3 S TENSOR REMARK 3 S11: -0.1613 S12: 0.2687 S13: 0.3217 REMARK 3 S21: -0.0149 S22: 0.2096 S23: 0.0124 REMARK 3 S31: -0.4017 S32: -0.2013 S33: -0.0271 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN B AND (RESID 87: 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.5605 9.5314 -37.6006 REMARK 3 T TENSOR REMARK 3 T11: 0.5093 T22: 0.2422 REMARK 3 T33: 0.1763 T12: -0.3479 REMARK 3 T13: 0.0612 T23: -0.2321 REMARK 3 L TENSOR REMARK 3 L11: 6.9952 L22: 6.4972 REMARK 3 L33: 6.9970 L12: 1.4679 REMARK 3 L13: 3.4397 L23: 2.6799 REMARK 3 S TENSOR REMARK 3 S11: 0.4296 S12: -0.1851 S13: -0.5783 REMARK 3 S21: -0.0870 S22: -0.0521 S23: 0.3349 REMARK 3 S31: 0.5483 S32: -0.3196 S33: -0.3686 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN B AND (RESID 96:114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.4945 9.4156 -38.8340 REMARK 3 T TENSOR REMARK 3 T11: 0.6942 T22: 0.4758 REMARK 3 T33: 0.1427 T12: -0.2951 REMARK 3 T13: 0.0726 T23: -0.2117 REMARK 3 L TENSOR REMARK 3 L11: 5.4311 L22: 6.3571 REMARK 3 L33: 0.6891 L12: -1.8469 REMARK 3 L13: -1.3118 L23: 0.8213 REMARK 3 S TENSOR REMARK 3 S11: 0.0837 S12: 1.0305 S13: -0.7348 REMARK 3 S21: -0.4097 S22: -0.0116 S23: 0.4543 REMARK 3 S31: 0.3471 S32: -0.2090 S33: -0.0060 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN C AND (RESID 2: 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6203 24.4690 -2.1356 REMARK 3 T TENSOR REMARK 3 T11: 0.5830 T22: 0.2136 REMARK 3 T33: 0.4128 T12: -0.1770 REMARK 3 T13: -0.0469 T23: -0.0760 REMARK 3 L TENSOR REMARK 3 L11: 1.9998 L22: 4.4483 REMARK 3 L33: 5.2920 L12: 1.7350 REMARK 3 L13: -6.2951 L23: 1.8670 REMARK 3 S TENSOR REMARK 3 S11: 0.1583 S12: 0.2058 S13: 0.7289 REMARK 3 S21: -0.6143 S22: 0.0922 S23: -0.4040 REMARK 3 S31: -0.4830 S32: 0.1508 S33: -0.2750 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN C AND (RESID 9: 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.8715 11.8294 -6.5919 REMARK 3 T TENSOR REMARK 3 T11: 0.7277 T22: 0.5499 REMARK 3 T33: 1.3158 T12: -0.1849 REMARK 3 T13: 0.2971 T23: -0.0532 REMARK 3 L TENSOR REMARK 3 L11: 8.2895 L22: 4.9562 REMARK 3 L33: 7.1342 L12: 5.0526 REMARK 3 L13: -4.9860 L23: -0.2529 REMARK 3 S TENSOR REMARK 3 S11: -0.8533 S12: 0.0030 S13: -1.9851 REMARK 3 S21: -0.8959 S22: 0.2453 S23: -2.4890 REMARK 3 S31: 0.8066 S32: 1.0468 S33: 0.6285 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN C AND (RESID 22: 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6096 15.8215 3.9896 REMARK 3 T TENSOR REMARK 3 T11: 0.4738 T22: 0.0835 REMARK 3 T33: 0.3209 T12: -0.0503 REMARK 3 T13: -0.1095 T23: -0.0758 REMARK 3 L TENSOR REMARK 3 L11: 1.6162 L22: 3.0559 REMARK 3 L33: 1.1606 L12: 0.6586 REMARK 3 L13: -0.1660 L23: 0.8451 REMARK 3 S TENSOR REMARK 3 S11: -0.0254 S12: -0.1352 S13: 0.1073 REMARK 3 S21: 0.1002 S22: 0.0816 S23: -0.2118 REMARK 3 S31: -0.2259 S32: 0.1806 S33: -0.0784 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN C AND (RESID 43: 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7022 4.8771 -1.8302 REMARK 3 T TENSOR REMARK 3 T11: 0.3243 T22: 0.1224 REMARK 3 T33: 0.3901 T12: -0.0300 REMARK 3 T13: 0.0365 T23: -0.0461 REMARK 3 L TENSOR REMARK 3 L11: 3.2996 L22: 8.2558 REMARK 3 L33: 3.4630 L12: -0.3851 REMARK 3 L13: -0.0640 L23: -0.1955 REMARK 3 S TENSOR REMARK 3 S11: -0.2021 S12: 0.0871 S13: -0.0936 REMARK 3 S21: -0.1868 S22: 0.1213 S23: -0.6257 REMARK 3 S31: 0.2996 S32: 0.2784 S33: 0.0759 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN C AND (RESID 70:100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7333 11.7948 -1.9789 REMARK 3 T TENSOR REMARK 3 T11: 0.4433 T22: 0.1399 REMARK 3 T33: 0.5663 T12: -0.0964 REMARK 3 T13: 0.0372 T23: -0.0638 REMARK 3 L TENSOR REMARK 3 L11: 2.6903 L22: 5.2908 REMARK 3 L33: 4.4845 L12: 1.1266 REMARK 3 L13: -0.6015 L23: 0.8214 REMARK 3 S TENSOR REMARK 3 S11: -0.2610 S12: 0.2399 S13: -0.4034 REMARK 3 S21: -0.5049 S22: 0.1695 S23: -1.1236 REMARK 3 S31: 0.2382 S32: 0.5005 S33: 0.0399 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN C AND (RESID 101:114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1956 18.0203 -5.3133 REMARK 3 T TENSOR REMARK 3 T11: 0.5756 T22: 0.1344 REMARK 3 T33: 0.3241 T12: -0.1687 REMARK 3 T13: -0.0681 T23: -0.1008 REMARK 3 L TENSOR REMARK 3 L11: 5.5441 L22: 4.6582 REMARK 3 L33: 3.7317 L12: 1.8395 REMARK 3 L13: -2.7540 L23: -0.5337 REMARK 3 S TENSOR REMARK 3 S11: -0.5027 S12: 0.3977 S13: -0.1243 REMARK 3 S21: -0.7926 S22: 0.2301 S23: -0.6889 REMARK 3 S31: 0.1695 S32: 0.1352 S33: 0.2032 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN D AND (RESID 2: 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.5069 20.2048 4.5270 REMARK 3 T TENSOR REMARK 3 T11: 0.5893 T22: 0.5695 REMARK 3 T33: 0.2444 T12: 0.0961 REMARK 3 T13: 0.0106 T23: -0.0819 REMARK 3 L TENSOR REMARK 3 L11: 8.5060 L22: 2.0023 REMARK 3 L33: 8.6817 L12: -5.8367 REMARK 3 L13: 5.7528 L23: -5.9919 REMARK 3 S TENSOR REMARK 3 S11: -0.6123 S12: -1.2470 S13: 0.0419 REMARK 3 S21: 1.3658 S22: 0.8211 S23: 0.1860 REMARK 3 S31: -1.1203 S32: -1.5494 S33: -0.2051 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN D AND (RESID 12: 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.4560 35.1159 -9.5477 REMARK 3 T TENSOR REMARK 3 T11: 0.5298 T22: 0.2607 REMARK 3 T33: 0.3331 T12: 0.1544 REMARK 3 T13: -0.0838 T23: -0.1386 REMARK 3 L TENSOR REMARK 3 L11: 0.4895 L22: 1.0089 REMARK 3 L33: 1.9506 L12: -0.6843 REMARK 3 L13: 0.4321 L23: -0.8997 REMARK 3 S TENSOR REMARK 3 S11: -0.0152 S12: -0.0000 S13: 0.0778 REMARK 3 S21: 0.1235 S22: -0.0704 S23: 0.0935 REMARK 3 S31: -0.2274 S32: -0.1264 S33: 0.0832 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN D AND (RESID 24: 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7107 19.6364 -3.1664 REMARK 3 T TENSOR REMARK 3 T11: 0.4265 T22: -0.0254 REMARK 3 T33: 0.1073 T12: 0.1188 REMARK 3 T13: -0.0926 T23: -0.3468 REMARK 3 L TENSOR REMARK 3 L11: 0.3973 L22: 0.5132 REMARK 3 L33: 1.6325 L12: -0.1277 REMARK 3 L13: 0.2329 L23: -0.3367 REMARK 3 S TENSOR REMARK 3 S11: -0.0336 S12: -0.1344 S13: -0.0275 REMARK 3 S21: 0.1548 S22: -0.0659 S23: 0.1113 REMARK 3 S31: -0.1279 S32: -0.1555 S33: 0.0619 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN D AND (RESID 51: 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0211 27.0391 -7.7290 REMARK 3 T TENSOR REMARK 3 T11: 0.5379 T22: 0.1724 REMARK 3 T33: 0.5309 T12: 0.0147 REMARK 3 T13: -0.0957 T23: -0.0794 REMARK 3 L TENSOR REMARK 3 L11: 3.9177 L22: 2.0029 REMARK 3 L33: 4.3006 L12: -5.4810 REMARK 3 L13: 1.9607 L23: -4.3618 REMARK 3 S TENSOR REMARK 3 S11: 0.2387 S12: 0.2494 S13: 0.6283 REMARK 3 S21: -1.2904 S22: -0.1932 S23: -1.1852 REMARK 3 S31: 0.1659 S32: 0.3073 S33: -0.0483 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: CHAIN D AND (RESID 63: 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6355 28.0289 6.1613 REMARK 3 T TENSOR REMARK 3 T11: 0.6207 T22: 0.1965 REMARK 3 T33: 0.2826 T12: 0.0946 REMARK 3 T13: -0.2726 T23: -0.2968 REMARK 3 L TENSOR REMARK 3 L11: 4.0487 L22: 4.7782 REMARK 3 L33: 3.0569 L12: -3.4162 REMARK 3 L13: 1.2604 L23: -3.3098 REMARK 3 S TENSOR REMARK 3 S11: -0.1689 S12: -0.2826 S13: 0.3915 REMARK 3 S21: 0.6019 S22: 0.0967 S23: -0.3707 REMARK 3 S31: -0.6509 S32: 0.1358 S33: 0.0549 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: CHAIN D AND (RESID 76: 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.5889 32.4724 -13.6367 REMARK 3 T TENSOR REMARK 3 T11: 0.5419 T22: 0.1651 REMARK 3 T33: 0.3409 T12: 0.0869 REMARK 3 T13: -0.1313 T23: -0.0929 REMARK 3 L TENSOR REMARK 3 L11: 4.7488 L22: 2.3301 REMARK 3 L33: 2.0001 L12: 0.8646 REMARK 3 L13: 6.7420 L23: 2.5504 REMARK 3 S TENSOR REMARK 3 S11: -0.2806 S12: 0.1266 S13: 0.5162 REMARK 3 S21: -0.4525 S22: -0.0222 S23: -0.1272 REMARK 3 S31: -0.9373 S32: 0.1183 S33: 0.3091 REMARK 3 TLS GROUP : 25 REMARK 3 SELECTION: CHAIN D AND (RESID 87: 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2946 18.0067 -4.3107 REMARK 3 T TENSOR REMARK 3 T11: 0.3332 T22: 0.0995 REMARK 3 T33: 0.1621 T12: 0.0697 REMARK 3 T13: -0.0958 T23: -0.2447 REMARK 3 L TENSOR REMARK 3 L11: 4.5567 L22: 2.0392 REMARK 3 L33: 6.1827 L12: -0.4128 REMARK 3 L13: 1.6994 L23: 1.7950 REMARK 3 S TENSOR REMARK 3 S11: 0.1359 S12: -0.1743 S13: -0.3070 REMARK 3 S21: 0.0827 S22: 0.0690 S23: 0.2056 REMARK 3 S31: 0.2826 S32: -0.0508 S33: -0.2243 REMARK 3 TLS GROUP : 26 REMARK 3 SELECTION: CHAIN D AND (RESID 96:108 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.7476 11.6152 -2.0106 REMARK 3 T TENSOR REMARK 3 T11: 0.3448 T22: 0.1197 REMARK 3 T33: 0.2933 T12: -0.0012 REMARK 3 T13: -0.0397 T23: -0.0686 REMARK 3 L TENSOR REMARK 3 L11: 2.7024 L22: 2.0446 REMARK 3 L33: 0.5754 L12: -1.1631 REMARK 3 L13: -0.0324 L23: -0.2817 REMARK 3 S TENSOR REMARK 3 S11: -0.0278 S12: 0.1907 S13: -0.4651 REMARK 3 S21: -0.0683 S22: -0.0365 S23: 0.1395 REMARK 3 S31: 0.0796 S32: -0.1213 S33: 0.0983 REMARK 3 TLS GROUP : 27 REMARK 3 SELECTION: CHAIN D AND (RESID 109:117 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.2807 34.2095 -13.8485 REMARK 3 T TENSOR REMARK 3 T11: 0.4688 T22: 0.2265 REMARK 3 T33: 0.2967 T12: 0.1771 REMARK 3 T13: -0.0205 T23: -0.1050 REMARK 3 L TENSOR REMARK 3 L11: 4.4306 L22: 2.0014 REMARK 3 L33: 8.6896 L12: -5.4365 REMARK 3 L13: 2.8424 L23: -5.7923 REMARK 3 S TENSOR REMARK 3 S11: 0.4320 S12: 0.2468 S13: 0.0552 REMARK 3 S21: -1.1907 S22: -0.0904 S23: 1.0086 REMARK 3 S31: 0.3977 S32: -0.0972 S33: -0.3167 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KJY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079432. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : KOHZU REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36706 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.1 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 30.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE OBTAINED BY ADDITION OF REMARK 280 0.1 MICROL PROTEIN TO AN EQUAL VOLUME OF 2.0 M AMMONIUM SULFATE REMARK 280 AND 0.1 M TRIS, PH 7.3, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 266.12000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 133.06000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 199.59000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 66.53000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 332.65000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 266.12000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 133.06000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 66.53000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 199.59000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 332.65000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 300 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 308 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 115 REMARK 465 VAL A 116 REMARK 465 SER A 117 REMARK 465 THR A 118 REMARK 465 ARG A 119 REMARK 465 HIS A 120 REMARK 465 HIS A 121 REMARK 465 HIS A 122 REMARK 465 HIS A 123 REMARK 465 HIS A 124 REMARK 465 HIS A 125 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 ALA B 115 REMARK 465 LYS B 116 REMARK 465 PRO B 117 REMARK 465 SER B 118 REMARK 465 ALA B 119 REMARK 465 ALA B 120 REMARK 465 ALA B 121 REMARK 465 HIS B 122 REMARK 465 HIS B 123 REMARK 465 HIS B 124 REMARK 465 HIS B 125 REMARK 465 HIS B 126 REMARK 465 HIS B 127 REMARK 465 HIS B 128 REMARK 465 HIS B 129 REMARK 465 VAL C 115 REMARK 465 VAL C 116 REMARK 465 SER C 117 REMARK 465 THR C 118 REMARK 465 ARG C 119 REMARK 465 HIS C 120 REMARK 465 HIS C 121 REMARK 465 HIS C 122 REMARK 465 HIS C 123 REMARK 465 HIS C 124 REMARK 465 HIS C 125 REMARK 465 GLY D -3 REMARK 465 PRO D -2 REMARK 465 GLY D -1 REMARK 465 SER D 0 REMARK 465 GLU D 1 REMARK 465 SER D 118 REMARK 465 ALA D 119 REMARK 465 ALA D 120 REMARK 465 ALA D 121 REMARK 465 HIS D 122 REMARK 465 HIS D 123 REMARK 465 HIS D 124 REMARK 465 HIS D 125 REMARK 465 HIS D 126 REMARK 465 HIS D 127 REMARK 465 HIS D 128 REMARK 465 HIS D 129 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 11 CG CD OE1 OE2 REMARK 470 PHE A 12 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE A 14 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 43 CG CD CE NZ REMARK 470 LYS A 67 CG CD CE NZ REMARK 470 GLU A 69 CG CD OE1 OE2 REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 LYS A 84 CG CD CE NZ REMARK 470 TYR A 113 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 114 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 11 CG CD CE NZ REMARK 470 GLU C 11 CG CD OE1 OE2 REMARK 470 PHE C 14 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS C 84 CG CD CE NZ REMARK 470 LYS C 112 CG CD CE NZ REMARK 470 ARG C 114 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 55 C2 NAG A 203 1.83 REMARK 500 ND2 ASN C 55 C2 NAG C 204 2.11 REMARK 500 O HOH D 415 O HOH D 422 2.17 REMARK 500 O HOH B 297 O HOH B 301 2.17 REMARK 500 ND2 ASN C 16 O5 NAG C 203 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 63 45.98 -99.72 REMARK 500 LEU A 101 -112.82 53.46 REMARK 500 TYR A 113 75.87 -105.80 REMARK 500 ARG B 59 -10.18 78.95 REMARK 500 LEU C 101 -107.95 52.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THIS RESIDUE IS ENCODED AS GLUTAMINE, BUT REMARK 999 SPONTANEOUSLY CYCLIZES TO PYROGLUTAMIC ACID. DBREF 4KJY A 1 117 UNP Q08722 CD47_HUMAN 19 135 DBREF 4KJY C 1 117 UNP Q08722 CD47_HUMAN 19 135 DBREF 4KJY B -3 129 PDB 4KJY 4KJY -3 129 DBREF 4KJY D -3 129 PDB 4KJY 4KJY -3 129 SEQADV 4KJY GLY A 15 UNP Q08722 CYS 33 ENGINEERED MUTATION SEQADV 4KJY THR A 118 UNP Q08722 EXPRESSION TAG SEQADV 4KJY ARG A 119 UNP Q08722 EXPRESSION TAG SEQADV 4KJY HIS A 120 UNP Q08722 EXPRESSION TAG SEQADV 4KJY HIS A 121 UNP Q08722 EXPRESSION TAG SEQADV 4KJY HIS A 122 UNP Q08722 EXPRESSION TAG SEQADV 4KJY HIS A 123 UNP Q08722 EXPRESSION TAG SEQADV 4KJY HIS A 124 UNP Q08722 EXPRESSION TAG SEQADV 4KJY HIS A 125 UNP Q08722 EXPRESSION TAG SEQADV 4KJY GLY C 15 UNP Q08722 CYS 33 ENGINEERED MUTATION SEQADV 4KJY THR C 118 UNP Q08722 EXPRESSION TAG SEQADV 4KJY ARG C 119 UNP Q08722 EXPRESSION TAG SEQADV 4KJY HIS C 120 UNP Q08722 EXPRESSION TAG SEQADV 4KJY HIS C 121 UNP Q08722 EXPRESSION TAG SEQADV 4KJY HIS C 122 UNP Q08722 EXPRESSION TAG SEQADV 4KJY HIS C 123 UNP Q08722 EXPRESSION TAG SEQADV 4KJY HIS C 124 UNP Q08722 EXPRESSION TAG SEQADV 4KJY HIS C 125 UNP Q08722 EXPRESSION TAG SEQRES 1 A 125 PCA LEU LEU PHE ASN LYS THR LYS SER VAL GLU PHE THR SEQRES 2 A 125 PHE GLY ASN ASP THR VAL VAL ILE PRO CYS PHE VAL THR SEQRES 3 A 125 ASN MET GLU ALA GLN ASN THR THR GLU VAL TYR VAL LYS SEQRES 4 A 125 TRP LYS PHE LYS GLY ARG ASP ILE TYR THR PHE ASP GLY SEQRES 5 A 125 ALA LEU ASN LYS SER THR VAL PRO THR ASP PHE SER SER SEQRES 6 A 125 ALA LYS ILE GLU VAL SER GLN LEU LEU LYS GLY ASP ALA SEQRES 7 A 125 SER LEU LYS MET ASP LYS SER ASP ALA VAL SER HIS THR SEQRES 8 A 125 GLY ASN TYR THR CYS GLU VAL THR GLU LEU THR ARG GLU SEQRES 9 A 125 GLY GLU THR ILE ILE GLU LEU LYS TYR ARG VAL VAL SER SEQRES 10 A 125 THR ARG HIS HIS HIS HIS HIS HIS SEQRES 1 B 133 GLY PRO GLY SER GLU GLU GLU VAL GLN ILE ILE GLN PRO SEQRES 2 B 133 ASP LYS SER VAL SER VAL ALA ALA GLY GLU SER ALA ILE SEQRES 3 B 133 LEU HIS CYS THR ILE THR SER LEU PHE PRO VAL GLY PRO SEQRES 4 B 133 ILE GLN TRP PHE ARG GLY ALA GLY PRO ALA ARG VAL LEU SEQRES 5 B 133 ILE TYR ASN GLN ARG GLN GLY PRO PHE PRO ARG VAL THR SEQRES 6 B 133 THR ILE SER GLU THR THR ARG ARG GLU ASN MET ASP PHE SEQRES 7 B 133 SER ILE SER ILE SER ASN ILE THR PRO ALA ASP ALA GLY SEQRES 8 B 133 THR TYR TYR CYS ILE LYS PHE ARG LYS GLY SER PRO ASP SEQRES 9 B 133 THR GLU PHE LYS SER GLY ALA GLY THR GLU LEU SER VAL SEQRES 10 B 133 ARG ALA LYS PRO SER ALA ALA ALA HIS HIS HIS HIS HIS SEQRES 11 B 133 HIS HIS HIS SEQRES 1 C 125 PCA LEU LEU PHE ASN LYS THR LYS SER VAL GLU PHE THR SEQRES 2 C 125 PHE GLY ASN ASP THR VAL VAL ILE PRO CYS PHE VAL THR SEQRES 3 C 125 ASN MET GLU ALA GLN ASN THR THR GLU VAL TYR VAL LYS SEQRES 4 C 125 TRP LYS PHE LYS GLY ARG ASP ILE TYR THR PHE ASP GLY SEQRES 5 C 125 ALA LEU ASN LYS SER THR VAL PRO THR ASP PHE SER SER SEQRES 6 C 125 ALA LYS ILE GLU VAL SER GLN LEU LEU LYS GLY ASP ALA SEQRES 7 C 125 SER LEU LYS MET ASP LYS SER ASP ALA VAL SER HIS THR SEQRES 8 C 125 GLY ASN TYR THR CYS GLU VAL THR GLU LEU THR ARG GLU SEQRES 9 C 125 GLY GLU THR ILE ILE GLU LEU LYS TYR ARG VAL VAL SER SEQRES 10 C 125 THR ARG HIS HIS HIS HIS HIS HIS SEQRES 1 D 133 GLY PRO GLY SER GLU GLU GLU VAL GLN ILE ILE GLN PRO SEQRES 2 D 133 ASP LYS SER VAL SER VAL ALA ALA GLY GLU SER ALA ILE SEQRES 3 D 133 LEU HIS CYS THR ILE THR SER LEU PHE PRO VAL GLY PRO SEQRES 4 D 133 ILE GLN TRP PHE ARG GLY ALA GLY PRO ALA ARG VAL LEU SEQRES 5 D 133 ILE TYR ASN GLN ARG GLN GLY PRO PHE PRO ARG VAL THR SEQRES 6 D 133 THR ILE SER GLU THR THR ARG ARG GLU ASN MET ASP PHE SEQRES 7 D 133 SER ILE SER ILE SER ASN ILE THR PRO ALA ASP ALA GLY SEQRES 8 D 133 THR TYR TYR CYS ILE LYS PHE ARG LYS GLY SER PRO ASP SEQRES 9 D 133 THR GLU PHE LYS SER GLY ALA GLY THR GLU LEU SER VAL SEQRES 10 D 133 ARG ALA LYS PRO SER ALA ALA ALA HIS HIS HIS HIS HIS SEQRES 11 D 133 HIS HIS HIS MODRES 4KJY ASN C 55 ASN GLYCOSYLATION SITE MODRES 4KJY ASN C 16 ASN GLYCOSYLATION SITE MODRES 4KJY ASN A 93 ASN GLYCOSYLATION SITE MODRES 4KJY ASN C 32 ASN GLYCOSYLATION SITE MODRES 4KJY ASN C 93 ASN GLYCOSYLATION SITE MODRES 4KJY ASN A 32 ASN GLYCOSYLATION SITE MODRES 4KJY ASN A 55 ASN GLYCOSYLATION SITE MODRES 4KJY ASN C 5 ASN GLYCOSYLATION SITE MODRES 4KJY PCA A 1 GLN PYROGLUTAMIC ACID MODRES 4KJY PCA C 1 GLN PYROGLUTAMIC ACID HET PCA A 1 8 HET PCA C 1 8 HET SO4 A 201 5 HET NAG A 202 14 HET NAG A 203 14 HET NAG A 204 14 HET NAG C 201 14 HET NAG C 202 14 HET NAG C 203 14 HET NAG C 204 14 HET NAG C 205 14 HET SO4 C 206 5 HET SO4 D 201 5 HETNAM PCA PYROGLUTAMIC ACID HETNAM SO4 SULFATE ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE FORMUL 1 PCA 2(C5 H7 N O3) FORMUL 5 SO4 3(O4 S 2-) FORMUL 6 NAG 8(C8 H15 N O6) FORMUL 16 HOH *378(H2 O) HELIX 1 1 ASN A 32 THR A 34 5 3 HELIX 2 2 VAL A 70 GLY A 76 5 7 HELIX 3 3 LYS A 84 SER A 89 1 6 HELIX 4 4 THR B 82 ALA B 86 5 5 HELIX 5 5 ASN C 32 THR C 34 5 3 HELIX 6 6 PRO C 60 SER C 64 5 5 HELIX 7 7 GLU C 69 GLY C 76 5 8 HELIX 8 8 LYS C 84 SER C 89 1 6 HELIX 9 9 THR D 82 ALA D 86 5 5 SHEET 1 A 6 SER A 9 GLU A 11 0 SHEET 2 A 6 ARG A 103 LYS A 112 1 O LYS A 112 N VAL A 10 SHEET 3 A 6 ASN A 93 GLU A 100 -1 N GLU A 100 O ARG A 103 SHEET 4 A 6 VAL A 36 PHE A 42 -1 N LYS A 39 O GLU A 97 SHEET 5 A 6 ARG A 45 ASP A 51 -1 O TYR A 48 N TRP A 40 SHEET 6 A 6 LYS A 56 THR A 58 -1 O LYS A 56 N ASP A 51 SHEET 1 B 3 THR A 18 ILE A 21 0 SHEET 2 B 3 LEU A 80 ASP A 83 -1 O MET A 82 N VAL A 19 SHEET 3 B 3 LYS A 67 ILE A 68 -1 N LYS A 67 O LYS A 81 SHEET 1 C 2 ILE B 6 ILE B 7 0 SHEET 2 C 2 THR B 26 ILE B 27 -1 O THR B 26 N ILE B 7 SHEET 1 D 5 SER B 12 VAL B 15 0 SHEET 2 D 5 THR B 109 VAL B 113 1 O GLU B 110 N VAL B 13 SHEET 3 D 5 GLY B 87 ARG B 95 -1 N GLY B 87 O LEU B 111 SHEET 4 D 5 ILE B 36 ARG B 40 -1 N GLN B 37 O ILE B 92 SHEET 5 D 5 VAL B 47 TYR B 50 -1 O ILE B 49 N TRP B 38 SHEET 1 E 4 SER B 12 VAL B 15 0 SHEET 2 E 4 THR B 109 VAL B 113 1 O GLU B 110 N VAL B 13 SHEET 3 E 4 GLY B 87 ARG B 95 -1 N GLY B 87 O LEU B 111 SHEET 4 E 4 THR B 101 SER B 105 -1 O THR B 101 N ARG B 95 SHEET 1 F 3 ALA B 21 LEU B 23 0 SHEET 2 F 3 ILE B 76 ILE B 78 -1 O ILE B 76 N LEU B 23 SHEET 3 F 3 VAL B 60 THR B 62 -1 N THR B 61 O SER B 77 SHEET 1 G 2 PHE C 4 ASN C 5 0 SHEET 2 G 2 PHE C 24 VAL C 25 -1 O PHE C 24 N ASN C 5 SHEET 1 H 6 SER C 9 GLU C 11 0 SHEET 2 H 6 ARG C 103 LYS C 112 1 O LYS C 112 N VAL C 10 SHEET 3 H 6 GLY C 92 GLU C 100 -1 N TYR C 94 O ILE C 109 SHEET 4 H 6 VAL C 36 PHE C 42 -1 N LYS C 39 O GLU C 97 SHEET 5 H 6 ARG C 45 ASP C 51 -1 O TYR C 48 N TRP C 40 SHEET 6 H 6 LYS C 56 THR C 58 -1 O LYS C 56 N ASP C 51 SHEET 1 I 2 THR C 18 ILE C 21 0 SHEET 2 I 2 LEU C 80 ASP C 83 -1 O MET C 82 N VAL C 19 SHEET 1 J 2 ILE D 6 ILE D 7 0 SHEET 2 J 2 THR D 26 ILE D 27 -1 O THR D 26 N ILE D 7 SHEET 1 K 5 SER D 12 ALA D 16 0 SHEET 2 K 5 THR D 109 ARG D 114 1 O GLU D 110 N VAL D 13 SHEET 3 K 5 GLY D 87 ARG D 95 -1 N TYR D 89 O THR D 109 SHEET 4 K 5 ILE D 36 ARG D 40 -1 N GLN D 37 O ILE D 92 SHEET 5 K 5 VAL D 47 TYR D 50 -1 O ILE D 49 N TRP D 38 SHEET 1 L 4 SER D 12 ALA D 16 0 SHEET 2 L 4 THR D 109 ARG D 114 1 O GLU D 110 N VAL D 13 SHEET 3 L 4 GLY D 87 ARG D 95 -1 N TYR D 89 O THR D 109 SHEET 4 L 4 THR D 101 SER D 105 -1 O PHE D 103 N LYS D 93 SHEET 1 M 3 ALA D 21 LEU D 23 0 SHEET 2 M 3 ILE D 76 ILE D 78 -1 O ILE D 76 N LEU D 23 SHEET 3 M 3 VAL D 60 THR D 62 -1 N THR D 61 O SER D 77 SSBOND 1 CYS A 23 CYS A 96 1555 1555 2.03 SSBOND 2 CYS B 25 CYS B 91 1555 1555 2.04 SSBOND 3 CYS C 23 CYS C 96 1555 1555 2.04 SSBOND 4 CYS D 25 CYS D 91 1555 1555 2.04 LINK C PCA A 1 N LEU A 2 1555 1555 1.33 LINK ND2 ASN A 32 C1 NAG A 202 1555 1555 1.45 LINK ND2 ASN A 55 C1 NAG A 203 1555 1555 1.46 LINK ND2 ASN A 93 C1 NAG A 204 1555 1555 1.44 LINK C PCA C 1 N LEU C 2 1555 1555 1.33 LINK ND2 ASN C 5 C1 NAG C 202 1555 1555 1.49 LINK ND2 ASN C 16 C1 NAG C 203 1555 1555 1.43 LINK ND2 ASN C 32 C1 NAG C 201 1555 1555 1.44 LINK ND2 ASN C 55 C1 NAG C 204 1555 1555 1.43 LINK ND2 ASN C 93 C1 NAG C 205 1555 1555 1.45 CISPEP 1 PHE B 31 PRO B 32 0 -3.74 CISPEP 2 GLY B 55 PRO B 56 0 -1.45 CISPEP 3 SER B 98 PRO B 99 0 2.57 CISPEP 4 PHE D 31 PRO D 32 0 -3.15 CISPEP 5 GLY D 55 PRO D 56 0 0.98 CISPEP 6 SER D 98 PRO D 99 0 1.53 CRYST1 71.340 71.340 399.180 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014017 0.008093 0.000000 0.00000 SCALE2 0.000000 0.016186 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002505 0.00000 HETATM 1 N PCA A 1 -11.481 22.962 -30.793 1.00 22.10 N HETATM 2 CA PCA A 1 -10.109 22.872 -31.273 1.00 20.27 C HETATM 3 CB PCA A 1 -9.873 23.785 -32.469 1.00 19.83 C HETATM 4 CG PCA A 1 -11.069 24.725 -32.508 1.00 24.42 C HETATM 5 CD PCA A 1 -12.032 24.078 -31.546 1.00 20.43 C HETATM 6 OE PCA A 1 -13.202 24.458 -31.429 1.00 29.62 O HETATM 7 C PCA A 1 -9.085 23.297 -30.247 1.00 27.24 C HETATM 8 O PCA A 1 -9.375 24.093 -29.346 1.00 32.38 O