HEADER PROTEIN TRANSPORT 05-MAY-13 4KK7 TITLE STRUCTURE OF ECCB1 FROM THE TYPE VII (ESX-1) SECRETION SYSTEM OF TITLE 2 MYCOBACTERIUM TUBERCULOSIS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESX-1 SECRETION SYSTEM PROTEIN ECCB1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 72-463; COMPND 5 SYNONYM: ECCB1 (RV3869); COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: RV3869, RVBD_3869; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS DUF690, SNM6, ESX-1, PROTEIN SECRETION, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR K.V.KOROTKOV,T.J.EVANS REVDAT 2 23-MAR-16 4KK7 1 JRNL REVDAT 1 19-JUN-13 4KK7 0 JRNL AUTH J.M.WAGNER,S.CHAN,T.J.EVANS,S.KAHNG,J.KIM,M.A.ARBING, JRNL AUTH 2 D.EISENBERG,K.V.KOROTKOV JRNL TITL STRUCTURES OF ECCB1 AND ECCD1 FROM THE CORE COMPLEX OF THE JRNL TITL 2 MYCOBACTERIAL ESX-1 TYPE VII SECRETION SYSTEM. JRNL REF BMC STRUCT.BIOL. V. 16 5 2016 JRNL REFN ESSN 1472-6807 JRNL PMID 26922638 JRNL DOI 10.1186/S12900-016-0056-6 REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 40651 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2118 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.68 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2637 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 141 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2870 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 347 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.30000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.105 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.919 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2965 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2835 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4065 ; 1.347 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6551 ; 0.758 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 384 ; 5.460 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 103 ;34.893 ;24.272 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 440 ;11.674 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;16.114 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 479 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3324 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 593 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1540 ; 1.035 ; 1.869 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1538 ; 1.035 ; 1.868 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1922 ; 1.678 ; 2.800 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 74 A 144 REMARK 3 ORIGIN FOR THE GROUP (A): 23.6460 6.1840 113.1840 REMARK 3 T TENSOR REMARK 3 T11: 0.1504 T22: 0.0165 REMARK 3 T33: 0.0483 T12: -0.0082 REMARK 3 T13: -0.0194 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.3341 L22: 1.7583 REMARK 3 L33: 4.6246 L12: 0.0305 REMARK 3 L13: 0.5491 L23: -1.9220 REMARK 3 S TENSOR REMARK 3 S11: -0.0036 S12: -0.0236 S13: 0.0150 REMARK 3 S21: 0.2540 S22: -0.0335 S23: -0.0222 REMARK 3 S31: 0.1168 S32: -0.0208 S33: 0.0371 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 145 A 185 REMARK 3 ORIGIN FOR THE GROUP (A): 7.2230 34.6250 85.7070 REMARK 3 T TENSOR REMARK 3 T11: 0.0251 T22: 0.0595 REMARK 3 T33: 0.0683 T12: 0.0094 REMARK 3 T13: 0.0079 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 1.4854 L22: 1.4673 REMARK 3 L33: 1.0539 L12: 0.2010 REMARK 3 L13: 0.2197 L23: -0.6051 REMARK 3 S TENSOR REMARK 3 S11: -0.0277 S12: -0.0427 S13: 0.1279 REMARK 3 S21: 0.0584 S22: 0.0305 S23: -0.0113 REMARK 3 S31: -0.1460 S32: -0.0314 S33: -0.0027 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 186 A 242 REMARK 3 ORIGIN FOR THE GROUP (A): 15.6320 41.9970 73.8470 REMARK 3 T TENSOR REMARK 3 T11: 0.0363 T22: 0.0703 REMARK 3 T33: 0.0793 T12: 0.0059 REMARK 3 T13: 0.0164 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.7303 L22: 2.2602 REMARK 3 L33: 3.4477 L12: -1.0713 REMARK 3 L13: 0.9772 L23: -1.4107 REMARK 3 S TENSOR REMARK 3 S11: 0.0587 S12: 0.1096 S13: 0.1205 REMARK 3 S21: -0.1997 S22: -0.1550 S23: -0.1350 REMARK 3 S31: -0.0809 S32: 0.1161 S33: 0.0963 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 243 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 12.1040 38.4340 47.9180 REMARK 3 T TENSOR REMARK 3 T11: 0.0834 T22: 0.0430 REMARK 3 T33: 0.0390 T12: 0.0094 REMARK 3 T13: 0.0135 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 2.2518 L22: 1.8451 REMARK 3 L33: 4.7644 L12: -0.3499 REMARK 3 L13: -1.2401 L23: 0.7388 REMARK 3 S TENSOR REMARK 3 S11: -0.0485 S12: -0.0190 S13: -0.0999 REMARK 3 S21: 0.1034 S22: 0.0012 S23: 0.0728 REMARK 3 S31: 0.1454 S32: 0.0466 S33: 0.0472 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 302 A 321 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0020 37.2060 41.4190 REMARK 3 T TENSOR REMARK 3 T11: 0.1548 T22: 0.1141 REMARK 3 T33: 0.0670 T12: -0.0486 REMARK 3 T13: 0.0113 T23: -0.0613 REMARK 3 L TENSOR REMARK 3 L11: 1.8350 L22: 6.8829 REMARK 3 L33: 3.8639 L12: -0.0461 REMARK 3 L13: -1.3934 L23: 0.6087 REMARK 3 S TENSOR REMARK 3 S11: -0.2178 S12: 0.4307 S13: -0.2694 REMARK 3 S21: -0.5109 S22: 0.0384 S23: 0.3802 REMARK 3 S31: 0.3665 S32: -0.4128 S33: 0.1794 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 322 A 372 REMARK 3 ORIGIN FOR THE GROUP (A): 7.3980 31.1240 76.7280 REMARK 3 T TENSOR REMARK 3 T11: 0.0500 T22: 0.1044 REMARK 3 T33: 0.1056 T12: -0.0042 REMARK 3 T13: -0.0159 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 0.4919 L22: 0.9971 REMARK 3 L33: 0.9894 L12: -0.1131 REMARK 3 L13: -0.0423 L23: -0.2447 REMARK 3 S TENSOR REMARK 3 S11: 0.0294 S12: 0.0791 S13: -0.0010 REMARK 3 S21: -0.1426 S22: 0.0338 S23: 0.0437 REMARK 3 S31: 0.0506 S32: -0.0655 S33: -0.0632 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 373 A 389 REMARK 3 ORIGIN FOR THE GROUP (A): 12.0590 30.5520 98.8020 REMARK 3 T TENSOR REMARK 3 T11: 0.0511 T22: 0.1580 REMARK 3 T33: 0.0390 T12: 0.0135 REMARK 3 T13: 0.0026 T23: -0.0478 REMARK 3 L TENSOR REMARK 3 L11: 16.5112 L22: 4.0426 REMARK 3 L33: 3.2577 L12: 0.1242 REMARK 3 L13: 1.9656 L23: -0.5133 REMARK 3 S TENSOR REMARK 3 S11: -0.1295 S12: -1.1099 S13: 0.6223 REMARK 3 S21: 0.1965 S22: -0.0212 S23: -0.1583 REMARK 3 S31: -0.0718 S32: -0.0237 S33: 0.1507 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 390 A 458 REMARK 3 ORIGIN FOR THE GROUP (A): 23.5360 16.3440 92.9380 REMARK 3 T TENSOR REMARK 3 T11: 0.0301 T22: 0.0682 REMARK 3 T33: 0.0818 T12: 0.0011 REMARK 3 T13: -0.0078 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 0.9745 L22: 1.5779 REMARK 3 L33: 1.9444 L12: 0.1738 REMARK 3 L13: -0.2047 L23: -0.6283 REMARK 3 S TENSOR REMARK 3 S11: -0.0063 S12: -0.0876 S13: -0.1454 REMARK 3 S21: 0.0853 S22: -0.0031 S23: -0.0389 REMARK 3 S31: 0.1220 S32: 0.0516 S33: 0.0095 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 4KK7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAY-13. REMARK 100 THE RCSB ID CODE IS RCSB079441. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-12; 15-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 8.4 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; APS REMARK 200 BEAMLINE : 22-ID; 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0; 1.5 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD; MARMOSAIC REMARK 200 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42744 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.99000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.160 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL PH 5.6, 15% PEG2000 MME, REMARK 280 0.01M NI CHLORIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 15.85000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.25500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.31500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.25500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 15.85000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.31500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 69 REMARK 465 ALA A 70 REMARK 465 MET A 71 REMARK 465 GLY A 72 REMARK 465 THR A 73 REMARK 465 GLU A 459 REMARK 465 HIS A 460 REMARK 465 ASP A 461 REMARK 465 THR A 462 REMARK 465 LEU A 463 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 301 108.32 -162.01 REMARK 500 ASP A 390 42.13 -109.08 REMARK 500 SER A 433 124.42 -24.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 502 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 179 OD1 REMARK 620 2 HOH A 942 O 94.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 501 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 915 O REMARK 620 2 TRS A 505 O3 174.3 REMARK 620 3 HIS A 366 NE2 93.2 90.9 REMARK 620 4 TRS A 505 N 89.3 86.3 96.1 REMARK 620 5 SER A 177 OG 93.8 90.2 91.0 172.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 506 DBREF 4KK7 A 72 463 UNP I6Y4Q7 I6Y4Q7_MYCTU 72 463 SEQADV 4KK7 GLY A 69 UNP I6Y4Q7 EXPRESSION TAG SEQADV 4KK7 ALA A 70 UNP I6Y4Q7 EXPRESSION TAG SEQADV 4KK7 MET A 71 UNP I6Y4Q7 EXPRESSION TAG SEQRES 1 A 395 GLY ALA MET GLY THR SER LEU PHE THR ASP ARG ALA THR SEQRES 2 A 395 ASN GLN LEU TYR VAL LEU LEU SER GLY GLN LEU HIS PRO SEQRES 3 A 395 VAL TYR ASN LEU THR SER ALA ARG LEU VAL LEU GLY ASN SEQRES 4 A 395 PRO ALA ASN PRO ALA THR VAL LYS SER SER GLU LEU SER SEQRES 5 A 395 LYS LEU PRO MET GLY GLN THR VAL GLY ILE PRO GLY ALA SEQRES 6 A 395 PRO TYR ALA THR PRO VAL SER ALA GLY SER THR SER ILE SEQRES 7 A 395 TRP THR LEU CYS ASP THR VAL ALA ARG ALA ASP SER THR SEQRES 8 A 395 SER PRO VAL VAL GLN THR ALA VAL ILE ALA MET PRO LEU SEQRES 9 A 395 GLU ILE ASP ALA SER ILE ASP PRO LEU GLN SER HIS GLU SEQRES 10 A 395 ALA VAL LEU VAL SER TYR GLN GLY GLU THR TRP ILE VAL SEQRES 11 A 395 THR THR LYS GLY ARG HIS ALA ILE ASP LEU THR ASP ARG SEQRES 12 A 395 ALA LEU THR SER SER MET GLY ILE PRO VAL THR ALA ARG SEQRES 13 A 395 PRO THR PRO ILE SER GLU GLY MET PHE ASN ALA LEU PRO SEQRES 14 A 395 ASP MET GLY PRO TRP GLN LEU PRO PRO ILE PRO ALA ALA SEQRES 15 A 395 GLY ALA PRO ASN SER LEU GLY LEU PRO ASP ASP LEU VAL SEQRES 16 A 395 ILE GLY SER VAL PHE GLN ILE HIS THR ASP LYS GLY PRO SEQRES 17 A 395 GLN TYR TYR VAL VAL LEU PRO ASP GLY ILE ALA GLN VAL SEQRES 18 A 395 ASN ALA THR THR ALA ALA ALA LEU ARG ALA THR GLN ALA SEQRES 19 A 395 HIS GLY LEU VAL ALA PRO PRO ALA MET VAL PRO SER LEU SEQRES 20 A 395 VAL VAL ARG ILE ALA GLU ARG VAL TYR PRO SER PRO LEU SEQRES 21 A 395 PRO ASP GLU PRO LEU LYS ILE VAL SER ARG PRO GLN ASP SEQRES 22 A 395 PRO ALA LEU CYS TRP SER TRP GLN ARG SER ALA GLY ASP SEQRES 23 A 395 GLN SER PRO GLN SER THR VAL LEU SER GLY ARG HIS LEU SEQRES 24 A 395 PRO ILE SER PRO SER ALA MET ASN MET GLY ILE LYS GLN SEQRES 25 A 395 ILE HIS GLY THR ALA THR VAL TYR LEU ASP GLY GLY LYS SEQRES 26 A 395 PHE VAL ALA LEU GLN SER PRO ASP PRO ARG TYR THR GLU SEQRES 27 A 395 SER MET TYR TYR ILE ASP PRO GLN GLY VAL ARG TYR GLY SEQRES 28 A 395 VAL PRO ASN ALA GLU THR ALA LYS SER LEU GLY LEU SER SEQRES 29 A 395 SER PRO GLN ASN ALA PRO TRP GLU ILE VAL ARG LEU LEU SEQRES 30 A 395 VAL ASP GLY PRO VAL LEU SER LYS ASP ALA ALA LEU LEU SEQRES 31 A 395 GLU HIS ASP THR LEU HET NI A 501 1 HET NI A 502 1 HET NI A 503 1 HET NI A 504 1 HET TRS A 505 8 HET GOL A 506 6 HETNAM NI NICKEL (II) ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM GOL GLYCEROL HETSYN TRS TRIS BUFFER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NI 4(NI 2+) FORMUL 6 TRS C4 H12 N O3 1+ FORMUL 7 GOL C3 H8 O3 FORMUL 8 HOH *347(H2 O) HELIX 1 1 ASN A 97 GLY A 106 1 10 HELIX 2 2 LYS A 115 LEU A 122 5 8 HELIX 3 3 ASP A 210 MET A 217 1 8 HELIX 4 4 SER A 229 LEU A 236 1 8 HELIX 5 5 ASN A 290 GLN A 301 1 12 HELIX 6 6 VAL A 312 VAL A 317 1 6 HELIX 7 7 PRO A 371 MET A 376 5 6 HELIX 8 8 ASN A 422 LEU A 429 1 8 HELIX 9 9 PRO A 438 ARG A 443 1 6 HELIX 10 10 SER A 452 LEU A 457 1 6 SHEET 1 A 4 GLN A 91 VAL A 95 0 SHEET 2 A 4 LEU A 84 LEU A 88 -1 N LEU A 88 O GLN A 91 SHEET 3 A 4 LEU A 75 ASP A 78 -1 N PHE A 76 O TYR A 85 SHEET 4 A 4 ALA A 112 VAL A 114 1 O ALA A 112 N LEU A 75 SHEET 1 B 7 ILE A 178 PRO A 180 0 SHEET 2 B 7 GLN A 358 GLY A 364 -1 O SER A 363 N ASP A 179 SHEET 3 B 7 ALA A 343 ARG A 350 -1 N SER A 347 O THR A 360 SHEET 4 B 7 SER A 145 ALA A 154 -1 N ASP A 151 O LEU A 344 SHEET 5 B 7 VAL A 162 ALA A 169 -1 O ILE A 168 N THR A 148 SHEET 6 B 7 THR A 386 LEU A 389 1 O TYR A 388 N ALA A 169 SHEET 7 B 7 ILE A 378 LYS A 379 -1 N ILE A 378 O VAL A 387 SHEET 1 C 4 GLY A 202 ILE A 206 0 SHEET 2 C 4 GLU A 194 THR A 199 -1 N ILE A 197 O HIS A 204 SHEET 3 C 4 GLU A 185 TYR A 191 -1 N VAL A 187 O VAL A 198 SHEET 4 C 4 THR A 226 PRO A 227 1 O THR A 226 N SER A 190 SHEET 1 D 4 GLY A 202 ILE A 206 0 SHEET 2 D 4 GLU A 194 THR A 199 -1 N ILE A 197 O HIS A 204 SHEET 3 D 4 GLU A 185 TYR A 191 -1 N VAL A 187 O VAL A 198 SHEET 4 D 4 LYS A 334 ILE A 335 1 O LYS A 334 N ALA A 186 SHEET 1 E 5 ALA A 310 MET A 311 0 SHEET 2 E 5 VAL A 267 THR A 272 1 N GLN A 269 O MET A 311 SHEET 3 E 5 GLY A 275 LEU A 282 -1 O GLY A 275 N THR A 272 SHEET 4 E 5 GLY A 285 VAL A 289 -1 O GLY A 285 N LEU A 282 SHEET 5 E 5 GLU A 321 ARG A 322 1 O ARG A 322 N ILE A 286 SHEET 1 F 4 ARG A 417 VAL A 420 0 SHEET 2 F 4 TYR A 404 ILE A 411 -1 N TYR A 410 O TYR A 418 SHEET 3 F 4 LYS A 393 PRO A 400 -1 N LEU A 397 O SER A 407 SHEET 4 F 4 GLN A 435 ASN A 436 1 O GLN A 435 N PHE A 394 SSBOND 1 CYS A 150 CYS A 345 1555 1555 2.15 LINK OD1 ASP A 179 NI NI A 502 1555 1555 1.95 LINK NI NI A 502 O HOH A 942 1555 1555 1.96 LINK NI NI A 501 O HOH A 915 1555 1555 1.97 LINK NI NI A 501 O3 TRS A 505 1555 1555 2.08 LINK NE2 HIS A 366 NI NI A 501 1555 1555 2.11 LINK NE2 HIS A 93 NI NI A 503 1555 1555 2.11 LINK NI NI A 501 N TRS A 505 1555 1555 2.11 LINK NE2 HIS A 184 NI NI A 504 1555 1555 2.11 LINK OG SER A 177 NI NI A 501 1555 1555 2.13 CISPEP 1 ASP A 401 PRO A 402 0 1.41 SITE 1 AC1 5 SER A 177 GLU A 230 HIS A 366 TRS A 505 SITE 2 AC1 5 HOH A 915 SITE 1 AC2 2 ASP A 179 HOH A 942 SITE 1 AC3 1 HIS A 93 SITE 1 AC4 2 GLN A 182 HIS A 184 SITE 1 AC5 10 ASP A 175 SER A 177 GLU A 230 HIS A 366 SITE 2 AC5 10 NI A 501 HOH A 673 HOH A 837 HOH A 867 SITE 3 AC5 10 HOH A 915 HOH A 916 SITE 1 AC6 6 SER A 143 ARG A 350 GLN A 435 ASN A 436 SITE 2 AC6 6 HOH A 851 HOH A 923 CRYST1 31.700 110.630 110.510 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031546 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009039 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009049 0.00000