HEADER HYDROLASE 06-MAY-13 4KKF OBSLTE 28-OCT-15 4KKF 4XWM TITLE COMPLEX STRUCTURE OF CATALYTIC DOMAIN OF CLOSTRIDIUM CELLULOVORANS TITLE 2 EXGS AND CELLOBIOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXOGLUCANASE S; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, UNP RESIDUES 32-674; COMPND 5 EC: 3.2.1.91; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM CELLULOVORANS; SOURCE 3 ORGANISM_TAXID: 1493; SOURCE 4 GENE: EXGS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHTPP13 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.-C.LIAW REVDAT 2 28-OCT-15 4KKF 1 OBSLTE REVDAT 1 14-MAY-14 4KKF 0 JRNL AUTH L.-C.TSAI,H.L.LEE,P.H.LIANG,Y.-C.LIAW JRNL TITL THREE COMPLEX STRUCTURES OF CLOSTRIDIUM CELLULOVORANS REVEAL JRNL TITL 2 ENZYMATIC FUNCTION OF KEY RESIDUES D50 AND D222 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.344 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 119728 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.142 REMARK 3 FREE R VALUE : 0.162 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.670 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.5091 - 4.1001 0.97 8687 148 0.1550 0.1671 REMARK 3 2 4.1001 - 3.2560 0.99 8494 144 0.1330 0.1549 REMARK 3 3 3.2560 - 2.8449 0.99 8451 143 0.1464 0.1713 REMARK 3 4 2.8449 - 2.5850 1.00 8468 144 0.1463 0.1613 REMARK 3 5 2.5850 - 2.3999 1.00 8443 144 0.1414 0.1532 REMARK 3 6 2.3999 - 2.2584 1.00 8373 142 0.1333 0.1677 REMARK 3 7 2.2584 - 2.1454 1.00 8396 143 0.1311 0.1410 REMARK 3 8 2.1454 - 2.0520 1.00 8406 142 0.1353 0.1624 REMARK 3 9 2.0520 - 1.9731 1.00 8367 143 0.1358 0.1572 REMARK 3 10 1.9731 - 1.9050 1.00 8343 141 0.1341 0.1435 REMARK 3 11 1.9050 - 1.8454 1.00 8337 142 0.1319 0.1602 REMARK 3 12 1.8454 - 1.7927 1.00 8335 141 0.1419 0.1553 REMARK 3 13 1.7927 - 1.7455 1.00 8371 143 0.1586 0.2163 REMARK 3 14 1.7455 - 1.7029 0.99 8257 140 0.1780 0.2015 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.142 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 5355 REMARK 3 ANGLE : 1.698 7337 REMARK 3 CHIRALITY : 0.113 749 REMARK 3 PLANARITY : 0.009 943 REMARK 3 DIHEDRAL : 14.437 1922 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 2:45) REMARK 3 ORIGIN FOR THE GROUP (A): 17.1181 25.9428 -31.3835 REMARK 3 T TENSOR REMARK 3 T11: 0.0502 T22: 0.1013 REMARK 3 T33: 0.0782 T12: -0.0185 REMARK 3 T13: 0.0083 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 1.2879 L22: 0.6891 REMARK 3 L33: 1.4647 L12: 0.1451 REMARK 3 L13: 0.6968 L23: 0.6707 REMARK 3 S TENSOR REMARK 3 S11: -0.0199 S12: 0.0972 S13: 0.0129 REMARK 3 S21: -0.0792 S22: 0.0505 S23: -0.0852 REMARK 3 S31: -0.1063 S32: 0.1888 S33: -0.0352 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 46:82) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7548 15.0168 -28.8202 REMARK 3 T TENSOR REMARK 3 T11: 0.0277 T22: 0.0918 REMARK 3 T33: 0.0885 T12: 0.0054 REMARK 3 T13: -0.0068 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.7962 L22: 1.2254 REMARK 3 L33: 2.6560 L12: 0.3909 REMARK 3 L13: 0.5045 L23: 0.8806 REMARK 3 S TENSOR REMARK 3 S11: 0.0356 S12: 0.0471 S13: -0.0806 REMARK 3 S21: -0.0355 S22: 0.0324 S23: -0.1247 REMARK 3 S31: 0.1269 S32: 0.1415 S33: -0.0675 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 83:220) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8313 23.1130 -6.2659 REMARK 3 T TENSOR REMARK 3 T11: 0.0723 T22: 0.1144 REMARK 3 T33: 0.0636 T12: 0.0080 REMARK 3 T13: -0.0135 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.7691 L22: 0.5447 REMARK 3 L33: 0.4054 L12: 0.1736 REMARK 3 L13: 0.1320 L23: 0.1305 REMARK 3 S TENSOR REMARK 3 S11: -0.0054 S12: -0.1263 S13: 0.0365 REMARK 3 S21: 0.0785 S22: 0.0232 S23: 0.0091 REMARK 3 S31: 0.0259 S32: -0.0088 S33: -0.0177 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 221:440) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2934 20.5489 -24.6256 REMARK 3 T TENSOR REMARK 3 T11: 0.0415 T22: 0.0636 REMARK 3 T33: 0.0604 T12: -0.0056 REMARK 3 T13: -0.0118 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.5336 L22: 0.3376 REMARK 3 L33: 0.5730 L12: -0.1044 REMARK 3 L13: 0.1262 L23: -0.1080 REMARK 3 S TENSOR REMARK 3 S11: -0.0034 S12: -0.0106 S13: -0.0233 REMARK 3 S21: -0.0024 S22: -0.0006 S23: 0.0165 REMARK 3 S31: -0.0094 S32: -0.0259 S33: 0.0049 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 441:485) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9869 37.7315 -36.5124 REMARK 3 T TENSOR REMARK 3 T11: 0.0955 T22: 0.0895 REMARK 3 T33: 0.1049 T12: 0.0060 REMARK 3 T13: -0.0292 T23: 0.0319 REMARK 3 L TENSOR REMARK 3 L11: 4.6607 L22: 0.4366 REMARK 3 L33: 1.8388 L12: 0.2633 REMARK 3 L13: -2.0144 L23: -0.0718 REMARK 3 S TENSOR REMARK 3 S11: 0.2017 S12: 0.0573 S13: 0.4179 REMARK 3 S21: -0.0405 S22: -0.0066 S23: 0.0204 REMARK 3 S31: -0.2409 S32: -0.0443 S33: -0.1562 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 486:627) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5077 34.6316 -30.2643 REMARK 3 T TENSOR REMARK 3 T11: 0.0850 T22: 0.0784 REMARK 3 T33: 0.1022 T12: -0.0035 REMARK 3 T13: -0.0022 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 0.5045 L22: 0.2407 REMARK 3 L33: 1.2945 L12: 0.1688 REMARK 3 L13: 0.5937 L23: 0.3115 REMARK 3 S TENSOR REMARK 3 S11: -0.0739 S12: 0.0469 S13: 0.1183 REMARK 3 S21: -0.0467 S22: 0.0117 S23: 0.0109 REMARK 3 S31: -0.2018 S32: 0.0853 S33: 0.0708 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TLS REMARK 4 REMARK 4 4KKF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-MAY-13. REMARK 100 THE RCSB ID CODE IS RCSB079449. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-09; 04-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : NSRRC; NSRRC REMARK 200 BEAMLINE : BL13B1; BL13C1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0; 1.0 REMARK 200 MONOCHROMATOR : LN2-COOLED DOUBLE CRYSTAL REMARK 200 SI(111) MONOCHROMATOR; SINGLE REMARK 200 CRYSTAL SI(111) BENT MONOCHROMATOR REMARK 200 OPTICS : MONOCHROMATOR; MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; ADSC QUANTUM REMARK 200 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 119873 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.26500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1F9O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, SODIUM TARTRATE, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.07250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 54.57000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 54.57000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.53625 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 54.57000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 54.57000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 136.60875 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 54.57000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.57000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 45.53625 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 54.57000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.57000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 136.60875 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 91.07250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1076 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 926 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1127 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -43 REMARK 465 GLY A -42 REMARK 465 SER A -41 REMARK 465 SER A -40 REMARK 465 HIS A -39 REMARK 465 HIS A -38 REMARK 465 HIS A -37 REMARK 465 HIS A -36 REMARK 465 HIS A -35 REMARK 465 HIS A -34 REMARK 465 SER A -33 REMARK 465 SER A -32 REMARK 465 GLY A -31 REMARK 465 LEU A -30 REMARK 465 VAL A -29 REMARK 465 PRO A -28 REMARK 465 ARG A -27 REMARK 465 GLY A -26 REMARK 465 SER A -25 REMARK 465 HIS A -24 REMARK 465 MET A -23 REMARK 465 ALA A -22 REMARK 465 SER A -21 REMARK 465 MET A -20 REMARK 465 THR A -19 REMARK 465 GLY A -18 REMARK 465 GLY A -17 REMARK 465 GLN A -16 REMARK 465 GLN A -15 REMARK 465 MET A -14 REMARK 465 GLY A -13 REMARK 465 ARG A -12 REMARK 465 ILE A -11 REMARK 465 GLU A -10 REMARK 465 GLY A -9 REMARK 465 ARG A -8 REMARK 465 GLU A -7 REMARK 465 PHE A -6 REMARK 465 ALA A -5 REMARK 465 ALA A -4 REMARK 465 PRO A -3 REMARK 465 VAL A -2 REMARK 465 ASP A 629 REMARK 465 PRO A 630 REMARK 465 THR A 631 REMARK 465 PRO A 632 REMARK 465 GLY A 633 REMARK 465 LEU A 634 REMARK 465 LYS A 635 REMARK 465 GLY A 636 REMARK 465 ASP A 637 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ILE A 362 CA CB CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1516 O HOH A 1518 2.00 REMARK 500 O HOH A 1472 O HOH A 1515 2.13 REMARK 500 O HOH A 1488 O HOH A 1504 2.18 REMARK 500 O HOH A 946 O HOH A 1254 2.19 REMARK 500 O HOH A 1106 O HOH A 1438 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 471 C - N - CA ANGL. DEV. = 16.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 39 -36.64 -162.91 REMARK 500 ALA A 40 -60.89 -143.63 REMARK 500 THR A 172 -77.59 -128.48 REMARK 500 GLN A 174 -19.74 -148.02 REMARK 500 ASN A 273 53.74 -147.74 REMARK 500 ASN A 317 82.53 -154.26 REMARK 500 VAL A 394 -51.91 72.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1414 DISTANCE = 5.66 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 703 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 178 O REMARK 620 2 ASP A 397 OD2 118.3 REMARK 620 3 HOH A1267 O 81.8 159.0 REMARK 620 4 GLU A 183 OE2 82.5 81.7 95.9 REMARK 620 5 HOH A1435 O 152.9 85.9 73.2 89.9 REMARK 620 6 GLN A 178 OE1 88.8 96.1 90.1 168.6 101.1 REMARK 620 7 GLU A 183 OE1 86.9 118.5 52.5 44.6 69.9 142.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CBK A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CBI A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 703 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KIH RELATED DB: PDB REMARK 900 WT STRUCTURE REMARK 900 RELATED ID: 4KKK RELATED DB: PDB DBREF 4KKF A -5 637 UNP O65986 O65986_CLOCL 32 674 SEQADV 4KKF MET A -43 UNP O65986 EXPRESSION TAG SEQADV 4KKF GLY A -42 UNP O65986 EXPRESSION TAG SEQADV 4KKF SER A -41 UNP O65986 EXPRESSION TAG SEQADV 4KKF SER A -40 UNP O65986 EXPRESSION TAG SEQADV 4KKF HIS A -39 UNP O65986 EXPRESSION TAG SEQADV 4KKF HIS A -38 UNP O65986 EXPRESSION TAG SEQADV 4KKF HIS A -37 UNP O65986 EXPRESSION TAG SEQADV 4KKF HIS A -36 UNP O65986 EXPRESSION TAG SEQADV 4KKF HIS A -35 UNP O65986 EXPRESSION TAG SEQADV 4KKF HIS A -34 UNP O65986 EXPRESSION TAG SEQADV 4KKF SER A -33 UNP O65986 EXPRESSION TAG SEQADV 4KKF SER A -32 UNP O65986 EXPRESSION TAG SEQADV 4KKF GLY A -31 UNP O65986 EXPRESSION TAG SEQADV 4KKF LEU A -30 UNP O65986 EXPRESSION TAG SEQADV 4KKF VAL A -29 UNP O65986 EXPRESSION TAG SEQADV 4KKF PRO A -28 UNP O65986 EXPRESSION TAG SEQADV 4KKF ARG A -27 UNP O65986 EXPRESSION TAG SEQADV 4KKF GLY A -26 UNP O65986 EXPRESSION TAG SEQADV 4KKF SER A -25 UNP O65986 EXPRESSION TAG SEQADV 4KKF HIS A -24 UNP O65986 EXPRESSION TAG SEQADV 4KKF MET A -23 UNP O65986 EXPRESSION TAG SEQADV 4KKF ALA A -22 UNP O65986 EXPRESSION TAG SEQADV 4KKF SER A -21 UNP O65986 EXPRESSION TAG SEQADV 4KKF MET A -20 UNP O65986 EXPRESSION TAG SEQADV 4KKF THR A -19 UNP O65986 EXPRESSION TAG SEQADV 4KKF GLY A -18 UNP O65986 EXPRESSION TAG SEQADV 4KKF GLY A -17 UNP O65986 EXPRESSION TAG SEQADV 4KKF GLN A -16 UNP O65986 EXPRESSION TAG SEQADV 4KKF GLN A -15 UNP O65986 EXPRESSION TAG SEQADV 4KKF MET A -14 UNP O65986 EXPRESSION TAG SEQADV 4KKF GLY A -13 UNP O65986 EXPRESSION TAG SEQADV 4KKF ARG A -12 UNP O65986 EXPRESSION TAG SEQADV 4KKF ILE A -11 UNP O65986 EXPRESSION TAG SEQADV 4KKF GLU A -10 UNP O65986 EXPRESSION TAG SEQADV 4KKF GLY A -9 UNP O65986 EXPRESSION TAG SEQADV 4KKF ARG A -8 UNP O65986 EXPRESSION TAG SEQADV 4KKF GLU A -7 UNP O65986 EXPRESSION TAG SEQADV 4KKF PHE A -6 UNP O65986 EXPRESSION TAG SEQRES 1 A 681 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 681 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 681 GLY GLN GLN MET GLY ARG ILE GLU GLY ARG GLU PHE ALA SEQRES 4 A 681 ALA PRO VAL VAL PRO ASN ASN GLU TYR VAL GLN HIS PHE SEQRES 5 A 681 LYS ASP MET TYR ALA LYS ILE HIS ASN ALA ASN ASN GLY SEQRES 6 A 681 TYR PHE SER ASP GLU GLY ILE PRO TYR HIS ALA VAL GLU SEQRES 7 A 681 THR LEU MET VAL GLU ALA PRO ASP TYR GLY HIS GLU THR SEQRES 8 A 681 THR SER GLU ALA PHE SER TYR TYR MET TRP LEU GLU ALA SEQRES 9 A 681 MET ASN ALA LYS LEU THR GLY ASP PHE SER GLY PHE LYS SEQRES 10 A 681 LYS ALA TRP ASP VAL THR GLU LYS TYR ILE ILE PRO GLY SEQRES 11 A 681 GLU THR ASP GLN PRO SER ALA SER MET SER ASN TYR ASP SEQRES 12 A 681 PRO ASN LYS PRO ALA THR TYR ALA ALA GLU HIS PRO ASP SEQRES 13 A 681 PRO SER MET TYR PRO SER GLN LEU GLN PHE GLY ALA ALA SEQRES 14 A 681 VAL GLY LYS ASP PRO LEU TYR ASN GLU LEU LYS SER THR SEQRES 15 A 681 TYR GLY THR SER GLN VAL TYR GLY MET HIS TRP LEU LEU SEQRES 16 A 681 ASP VAL ASP ASN TRP TYR GLY PHE GLY GLY ALA THR SER SEQRES 17 A 681 THR SER PRO VAL TYR ILE ASN THR PHE GLN ARG GLY VAL SEQRES 18 A 681 GLN GLU SER CYS TRP GLU THR VAL PRO GLN PRO CYS LYS SEQRES 19 A 681 ASP GLU MET LYS TYR GLY GLY ARG ASN GLY PHE LEU ASP SEQRES 20 A 681 LEU PHE THR GLY ASP SER GLN TYR ALA THR GLN PHE LYS SEQRES 21 A 681 TYR THR ASN ALA PRO ASP ALA ASP ALA ARG ALA VAL GLN SEQRES 22 A 681 ALA THR TYR TYR ALA GLN LEU ALA ALA LYS GLU TRP GLY SEQRES 23 A 681 VAL ASP ILE SER SER TYR VAL ALA LYS SER THR LYS MET SEQRES 24 A 681 GLY ASP PHE LEU ARG TYR SER PHE PHE ASP LYS TYR PHE SEQRES 25 A 681 ARG LYS VAL GLY ASN SER THR GLN ALA GLY THR GLY TYR SEQRES 26 A 681 ASP SER ALA GLN TYR LEU LEU ASN TRP TYR TYR ALA TRP SEQRES 27 A 681 GLY GLY GLY ILE SER SER ASN TRP SER TRP ARG ILE GLY SEQRES 28 A 681 SER SER HIS ASN HIS PHE GLY TYR GLN ASN PRO MET ALA SEQRES 29 A 681 ALA TRP ILE LEU SER ASN THR SER ASP PHE LYS PRO LYS SEQRES 30 A 681 SER PRO ASN ALA ALA THR ASP TRP ASN ASN SER LEU LYS SEQRES 31 A 681 ARG GLN ILE GLU PHE TYR GLN TRP LEU GLN SER ALA GLU SEQRES 32 A 681 GLY GLY ILE ALA GLY GLY ALA SER ASN SER ASN GLY GLY SEQRES 33 A 681 SER TYR GLN ALA TRP PRO ALA GLY THR ARG THR PHE TYR SEQRES 34 A 681 GLY MET GLY TYR THR PRO HIS PRO VAL TYR GLU ASP PRO SEQRES 35 A 681 GLY SER ASN GLU TRP PHE GLY MET GLN ALA TRP SER MET SEQRES 36 A 681 GLN ARG VAL ALA GLU TYR TYR TYR SER SER LYS ASP PRO SEQRES 37 A 681 ALA ALA LYS SER LEU LEU ASP LYS TRP ALA LYS TRP ALA SEQRES 38 A 681 CYS ALA ASN VAL GLN PHE ASP ASP ALA ALA LYS LYS PHE SEQRES 39 A 681 LYS ILE PRO ALA LYS LEU VAL TRP THR GLY GLN PRO ASP SEQRES 40 A 681 THR TRP THR GLY SER TYR THR GLY ASN SER ASN LEU HIS SEQRES 41 A 681 VAL LYS VAL GLU ALA TYR GLY GLU ASP LEU GLY VAL ALA SEQRES 42 A 681 GLY SER LEU SER ASN ALA LEU SER TYR TYR ALA LYS ALA SEQRES 43 A 681 LEU GLU SER SER THR ASP ALA ALA ASP LYS VAL ALA TYR SEQRES 44 A 681 ASN THR ALA LYS GLU THR SER ARG LYS ILE LEU ASP TYR SEQRES 45 A 681 LEU TRP ALA SER TYR GLN ASP ASP LYS GLY ILE ALA VAL SEQRES 46 A 681 THR GLU THR ARG ASN ASP PHE LYS ARG PHE ASN GLN SER SEQRES 47 A 681 VAL TYR ILE PRO SER GLY TRP THR GLY LYS MET PRO ASN SEQRES 48 A 681 GLY ASP VAL ILE GLN SER GLY ALA THR PHE LEU SER ILE SEQRES 49 A 681 ARG SER LYS TYR LYS GLN ASP PRO SER TRP PRO ASN VAL SEQRES 50 A 681 GLU ALA ALA LEU ALA ASN GLY THR GLY VAL ASP MET THR SEQRES 51 A 681 TYR HIS ARG PHE TRP GLY GLN SER ASP ILE ALA ILE ALA SEQRES 52 A 681 PHE GLY THR TYR GLY THR LEU PHE THR ASP PRO THR PRO SEQRES 53 A 681 GLY LEU LYS GLY ASP HET CBK A 701 23 HET CBI A 702 23 HET CA A 703 1 HETNAM CBK 4-O-BETA-D-GLUCOPYRANOSYL-ALPHA-D-GLUCOPYRANOSE HETNAM CBI CELLOBIOSE HETNAM CA CALCIUM ION FORMUL 2 CBK C12 H22 O11 FORMUL 3 CBI C12 H22 O11 FORMUL 4 CA CA 2+ FORMUL 5 HOH *762(H2 O) HELIX 1 1 ASN A 2 ASN A 17 1 16 HELIX 2 2 ALA A 18 GLY A 21 5 4 HELIX 3 3 SER A 49 GLY A 67 1 19 HELIX 4 4 PHE A 69 ILE A 83 1 15 HELIX 5 5 PRO A 91 SER A 96 1 6 HELIX 6 6 ASP A 112 TYR A 116 5 5 HELIX 7 7 LEU A 131 GLY A 140 1 10 HELIX 8 8 PHE A 201 LEU A 204 5 4 HELIX 9 9 ALA A 220 GLY A 242 1 23 HELIX 10 10 ILE A 245 LEU A 259 1 15 HELIX 11 11 ARG A 260 PHE A 264 5 5 HELIX 12 12 GLY A 280 ALA A 284 5 5 HELIX 13 13 GLY A 314 GLN A 316 5 3 HELIX 14 14 ASN A 317 THR A 327 1 11 HELIX 15 15 ASN A 336 LEU A 355 1 20 HELIX 16 16 SER A 369 SER A 373 5 5 HELIX 17 17 PHE A 404 LYS A 422 1 19 HELIX 18 18 ASP A 423 ALA A 425 5 3 HELIX 19 19 ALA A 426 ASN A 440 1 15 HELIX 20 20 ASP A 485 GLU A 504 1 20 HELIX 21 21 ASP A 508 TYR A 533 1 26 HELIX 22 22 ASN A 546 GLN A 553 5 8 HELIX 23 23 ARG A 581 ASP A 587 5 7 HELIX 24 24 SER A 589 ASN A 599 1 11 HELIX 25 25 ARG A 609 PHE A 627 1 19 SHEET 1 A 4 GLU A 46 THR A 48 0 SHEET 2 A 4 LEU A 150 ASP A 152 -1 O LEU A 151 N THR A 47 SHEET 3 A 4 VAL A 168 ASN A 171 -1 O VAL A 168 N ASP A 152 SHEET 4 A 4 GLN A 187 PRO A 188 -1 O GLN A 187 N ASN A 171 SHEET 1 B 2 SER A 118 GLN A 119 0 SHEET 2 B 2 THR A 206 GLY A 207 1 O GLY A 207 N SER A 118 SHEET 1 C 4 LYS A 190 ASP A 191 0 SHEET 2 C 4 GLN A 214 THR A 218 -1 O GLN A 214 N ASP A 191 SHEET 3 C 4 ALA A 293 GLY A 297 -1 O TRP A 294 N TYR A 217 SHEET 4 C 4 SER A 303 ILE A 306 -1 O ILE A 306 N ALA A 293 SHEET 1 D 4 HIS A 310 HIS A 312 0 SHEET 2 D 4 GLY A 365 SER A 367 -1 O ALA A 366 N ASN A 311 SHEET 3 D 4 MET A 387 THR A 390 -1 O THR A 390 N GLY A 365 SHEET 4 D 4 THR A 383 PHE A 384 -1 N PHE A 384 O MET A 387 SHEET 1 E 3 GLN A 442 ASP A 444 0 SHEET 2 E 3 LYS A 449 GLY A 460 -1 O LYS A 449 N ASP A 444 SHEET 3 E 3 LEU A 475 GLY A 483 -1 O ALA A 481 N ALA A 454 SHEET 1 F 2 THR A 542 ARG A 545 0 SHEET 2 F 2 VAL A 603 THR A 606 -1 O VAL A 603 N ARG A 545 SHEET 1 G 2 GLY A 563 LYS A 564 0 SHEET 2 G 2 VAL A 570 ILE A 571 -1 O ILE A 571 N GLY A 563 LINK O GLN A 178 CA CA A 703 1555 1555 2.30 LINK OD2 ASP A 397 CA CA A 703 1555 1555 2.32 LINK CA CA A 703 O HOH A1267 1555 1555 2.38 LINK OE2 GLU A 183 CA CA A 703 1555 1555 2.49 LINK CA CA A 703 O HOH A1435 1555 1555 2.57 LINK OE1 GLN A 178 CA CA A 703 1555 1555 2.60 LINK OE1 GLU A 183 CA CA A 703 1555 1555 3.02 CISPEP 1 TYR A 116 PRO A 117 0 7.73 CISPEP 2 ASP A 397 PRO A 398 0 0.73 SITE 1 AC1 15 HIS A 31 GLU A 39 GLU A 50 TRP A 403 SITE 2 AC1 15 TRP A 409 ASP A 485 ARG A 609 TRP A 611 SITE 3 AC1 15 HOH A 949 HOH A 964 HOH A1099 HOH A1257 SITE 4 AC1 15 HOH A1385 HOH A1473 HOH A1477 SITE 1 AC2 18 TRP A 149 ASN A 171 PHE A 173 GLN A 174 SITE 2 AC2 18 LYS A 216 THR A 218 ASN A 219 TRP A 290 SITE 3 AC2 18 TYR A 291 TYR A 315 TYR A 395 HOH A 864 SITE 4 AC2 18 HOH A1036 HOH A1167 HOH A1243 HOH A1260 SITE 5 AC2 18 HOH A1385 HOH A1529 SITE 1 AC3 5 GLN A 178 GLU A 183 ASP A 397 HOH A1267 SITE 2 AC3 5 HOH A1435 CRYST1 109.140 109.140 182.145 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009163 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009163 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005490 0.00000