HEADER HYDROLASE 07-MAY-13 4KL7 TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF RPFB FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RESUSCITATION-PROMOTING FACTOR RPFB; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 283-362; COMPND 5 EC: 3.-.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 STRAIN: RV37; SOURCE 5 GENE: RPFB, RV1009, MT1038, MTC1237.26; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CELL WALL HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.SQUEGLIA,M.ROMANO,A.RUGGIERO,R.BERISIO REVDAT 1 26-JUN-13 4KL7 0 JRNL AUTH F.SQUEGLIA,M.ROMANO,A.RUGGIERO,L.VITAGLIANO,A.DE SIMONE, JRNL AUTH 2 R.BERISIO JRNL TITL CARBOHYDRATE RECOGNITION BY RPFB FROM MYCOBACTERIUM JRNL TITL 2 TUBERCULOSIS UNVEILED BY CRYSTALLOGRAPHIC AND MOLECULAR JRNL TITL 3 DYNAMICS ANALYSES. JRNL REF BIOPHYS.J. V. 104 2530 2013 JRNL REFN ISSN 0006-3495 JRNL PMID 23746526 JRNL DOI 10.1016/J.BPJ.2013.04.040 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 82.2 REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2076 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2076 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 61.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.1620 REMARK 3 BIN FREE R VALUE SET COUNT : 114 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2392 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 516 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.32000 REMARK 3 B22 (A**2) : 1.16000 REMARK 3 B33 (A**2) : -1.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.39000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.112 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.084 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.042 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.347 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2464 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1616 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3360 ; 1.531 ; 1.889 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3836 ; 1.088 ; 3.004 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 316 ; 6.780 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;31.801 ;23.226 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 316 ;13.487 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;16.881 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 328 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2920 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 572 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1552 ; 1.360 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 680 ; 0.546 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2404 ; 2.094 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 912 ; 3.054 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 956 ; 4.387 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4080 ; 1.493 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 531 ; 5.693 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4018 ; 2.216 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4KL7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUN-13. REMARK 100 THE RCSB ID CODE IS RCSB079477. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SATURN944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38135 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6 MG ML-1, 0,5% (W/V) PEG8000, 1M REMARK 280 AMMONIUM SULPHATE, 0,1 M HEPES, PH 7.5, AND 120 MM BENZAMIDINE , REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.79750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 362 NE CZ NH1 NH2 REMARK 470 ARG B 362 NE CZ NH1 NH2 REMARK 470 ARG C 362 NE CZ NH1 NH2 REMARK 470 ARG D 362 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CZ ARG C 344 O HOH C 510 2.05 REMARK 500 O HOH B 531 O HOH B 633 2.09 REMARK 500 O GLY C 295 O HOH C 499 2.11 REMARK 500 O HOH A 807 O HOH B 630 2.13 REMARK 500 O HOH D 444 O HOH D 521 2.13 REMARK 500 O HOH A 806 O HOH A 813 2.15 REMARK 500 NE2 GLN A 347 O HOH A 829 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 334 CG GLU A 334 CD 0.101 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 346 CD - NE - CZ ANGL. DEV. = 9.3 DEGREES REMARK 500 ARG A 346 NE - CZ - NH1 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG A 346 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 358 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG C 358 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG C 358 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 293 17.21 -143.58 REMARK 500 ASN A 300 83.39 -154.83 REMARK 500 ASN B 300 84.53 -156.14 REMARK 500 TRP B 352 66.62 -119.40 REMARK 500 ALA C 293 10.39 -145.38 REMARK 500 ASN C 300 88.98 -161.03 REMARK 500 ALA C 361 87.29 61.04 REMARK 500 ALA D 293 16.81 -145.12 REMARK 500 ASN D 300 89.26 -158.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER C 283 ILE C 284 148.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 770 DISTANCE = 8.67 ANGSTROMS REMARK 525 HOH A 780 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH A 794 DISTANCE = 5.35 ANGSTROMS REMARK 525 HOH B 596 DISTANCE = 5.36 ANGSTROMS REMARK 525 HOH D 458 DISTANCE = 5.38 ANGSTROMS REMARK 525 HOH D 483 DISTANCE = 5.09 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EMN RELATED DB: PDB REMARK 900 RELATED ID: 3EO5 RELATED DB: PDB REMARK 900 RELATED ID: 4KPM RELATED DB: PDB DBREF 4KL7 A 283 362 UNP O05594 RPFB_MYCTU 283 362 DBREF 4KL7 B 283 362 UNP O05594 RPFB_MYCTU 283 362 DBREF 4KL7 C 283 362 UNP O05594 RPFB_MYCTU 283 362 DBREF 4KL7 D 283 362 UNP O05594 RPFB_MYCTU 283 362 SEQRES 1 A 80 SER ILE TRP ASP ALA ILE ALA GLY CYS GLU ALA GLY GLY SEQRES 2 A 80 ASN TRP ALA ILE ASN THR GLY ASN GLY TYR TYR GLY GLY SEQRES 3 A 80 VAL GLN PHE ASP GLN GLY THR TRP GLU ALA ASN GLY GLY SEQRES 4 A 80 LEU ARG TYR ALA PRO ARG ALA ASP LEU ALA THR ARG GLU SEQRES 5 A 80 GLU GLN ILE ALA VAL ALA GLU VAL THR ARG LEU ARG GLN SEQRES 6 A 80 GLY TRP GLY ALA TRP PRO VAL CYS ALA ALA ARG ALA GLY SEQRES 7 A 80 ALA ARG SEQRES 1 B 80 SER ILE TRP ASP ALA ILE ALA GLY CYS GLU ALA GLY GLY SEQRES 2 B 80 ASN TRP ALA ILE ASN THR GLY ASN GLY TYR TYR GLY GLY SEQRES 3 B 80 VAL GLN PHE ASP GLN GLY THR TRP GLU ALA ASN GLY GLY SEQRES 4 B 80 LEU ARG TYR ALA PRO ARG ALA ASP LEU ALA THR ARG GLU SEQRES 5 B 80 GLU GLN ILE ALA VAL ALA GLU VAL THR ARG LEU ARG GLN SEQRES 6 B 80 GLY TRP GLY ALA TRP PRO VAL CYS ALA ALA ARG ALA GLY SEQRES 7 B 80 ALA ARG SEQRES 1 C 80 SER ILE TRP ASP ALA ILE ALA GLY CYS GLU ALA GLY GLY SEQRES 2 C 80 ASN TRP ALA ILE ASN THR GLY ASN GLY TYR TYR GLY GLY SEQRES 3 C 80 VAL GLN PHE ASP GLN GLY THR TRP GLU ALA ASN GLY GLY SEQRES 4 C 80 LEU ARG TYR ALA PRO ARG ALA ASP LEU ALA THR ARG GLU SEQRES 5 C 80 GLU GLN ILE ALA VAL ALA GLU VAL THR ARG LEU ARG GLN SEQRES 6 C 80 GLY TRP GLY ALA TRP PRO VAL CYS ALA ALA ARG ALA GLY SEQRES 7 C 80 ALA ARG SEQRES 1 D 80 SER ILE TRP ASP ALA ILE ALA GLY CYS GLU ALA GLY GLY SEQRES 2 D 80 ASN TRP ALA ILE ASN THR GLY ASN GLY TYR TYR GLY GLY SEQRES 3 D 80 VAL GLN PHE ASP GLN GLY THR TRP GLU ALA ASN GLY GLY SEQRES 4 D 80 LEU ARG TYR ALA PRO ARG ALA ASP LEU ALA THR ARG GLU SEQRES 5 D 80 GLU GLN ILE ALA VAL ALA GLU VAL THR ARG LEU ARG GLN SEQRES 6 D 80 GLY TRP GLY ALA TRP PRO VAL CYS ALA ALA ARG ALA GLY SEQRES 7 D 80 ALA ARG HET SO4 A 601 5 HET SO4 B 401 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 HOH *516(H2 O) HELIX 1 1 SER A 283 GLY A 294 1 12 HELIX 2 2 GLN A 313 ASN A 319 1 7 HELIX 3 3 GLY A 320 TYR A 324 5 5 HELIX 4 4 ARG A 327 ALA A 331 5 5 HELIX 5 5 THR A 332 GLY A 348 1 17 HELIX 6 6 TRP A 349 TRP A 352 5 4 HELIX 7 7 VAL A 354 ALA A 359 1 6 HELIX 8 8 ILE B 284 GLY B 294 1 11 HELIX 9 9 ASP B 312 ASN B 319 1 8 HELIX 10 10 GLY B 320 TYR B 324 5 5 HELIX 11 11 ARG B 327 ALA B 331 5 5 HELIX 12 12 THR B 332 GLY B 348 1 17 HELIX 13 13 TRP B 352 GLY B 360 1 9 HELIX 14 14 ILE C 284 GLY C 294 1 11 HELIX 15 15 ASP C 312 ASN C 319 1 8 HELIX 16 16 GLY C 320 TYR C 324 5 5 HELIX 17 17 ARG C 327 ALA C 331 5 5 HELIX 18 18 THR C 332 GLY C 348 1 17 HELIX 19 19 TRP C 349 TRP C 352 5 4 HELIX 20 20 VAL C 354 GLY C 360 1 7 HELIX 21 21 ILE D 284 GLY D 294 1 11 HELIX 22 22 GLN D 313 ASN D 319 1 7 HELIX 23 23 GLY D 320 TYR D 324 5 5 HELIX 24 24 ARG D 327 ALA D 331 5 5 HELIX 25 25 THR D 332 GLY D 348 1 17 HELIX 26 26 TRP D 349 TRP D 352 5 4 HELIX 27 27 VAL D 354 GLY D 360 1 7 SHEET 1 A 2 TYR A 305 TYR A 306 0 SHEET 2 A 2 PHE A 311 ASP A 312 -1 O PHE A 311 N TYR A 306 SHEET 1 B 2 TYR D 305 TYR D 306 0 SHEET 2 B 2 PHE D 311 ASP D 312 -1 O PHE D 311 N TYR D 306 SSBOND 1 CYS A 291 CYS A 355 1555 1555 2.04 SSBOND 2 CYS B 291 CYS B 355 1555 1555 2.05 SSBOND 3 CYS C 291 CYS C 355 1555 1555 2.05 SSBOND 4 CYS D 291 CYS D 355 1555 1555 2.05 SITE 1 AC1 2 ARG A 346 HOH A 795 SITE 1 AC2 3 ARG B 346 HOH B 609 ARG C 346 CRYST1 42.427 51.595 66.594 90.00 104.06 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023570 0.000000 0.005901 0.00000 SCALE2 0.000000 0.019382 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015480 0.00000