HEADER PROTEIN BINDING 08-MAY-13 4KM8 TITLE CRYSTAL STRUCTURE OF SUFUD60 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPPRESSOR OF FUSED HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-285, 346-484; COMPND 5 SYNONYM: SUFUH; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SUFU, UNQ650/PRO1280; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHANG,X.QI,Z.ZHANG,G.WU REVDAT 5 15-NOV-17 4KM8 1 REMARK REVDAT 4 23-AUG-17 4KM8 1 SOURCE REMARK REVDAT 3 12-FEB-14 4KM8 1 JRNL REVDAT 2 27-NOV-13 4KM8 1 REMARK REVDAT 1 20-NOV-13 4KM8 0 JRNL AUTH Y.ZHANG,L.FU,X.QI,Z.ZHANG,Y.XIA,J.JIA,J.JIANG,Y.ZHAO,G.WU JRNL TITL STRUCTURAL INSIGHT INTO THE MUTUAL RECOGNITION AND JRNL TITL 2 REGULATION BETWEEN SUPPRESSOR OF FUSED AND GLI/CI. JRNL REF NAT COMMUN V. 4 2608 2013 JRNL REFN ESSN 2041-1723 JRNL PMID 24217340 JRNL DOI 10.1038/NCOMMS3608 REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 24721 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1316 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.26 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.32 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1734 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3044 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 127 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.79000 REMARK 3 B22 (A**2) : 0.84000 REMARK 3 B33 (A**2) : -2.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.252 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.214 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.160 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.159 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3132 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4265 ; 1.337 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 382 ; 5.997 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;35.005 ;23.904 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 485 ;16.932 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;14.310 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 458 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2432 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1923 ; 0.746 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3105 ; 1.366 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1209 ; 1.809 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1160 ; 2.842 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -7 A 481 REMARK 3 ORIGIN FOR THE GROUP (A): -26.6539 -17.5257 -4.1872 REMARK 3 T TENSOR REMARK 3 T11: 0.0687 T22: 0.0441 REMARK 3 T33: 0.0165 T12: 0.0414 REMARK 3 T13: 0.0158 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.1907 L22: 0.0325 REMARK 3 L33: 0.2950 L12: 0.0379 REMARK 3 L13: 0.0006 L23: -0.0359 REMARK 3 S TENSOR REMARK 3 S11: -0.0180 S12: -0.0022 S13: -0.0326 REMARK 3 S21: 0.0022 S22: -0.0165 S23: -0.0130 REMARK 3 S31: 0.1195 S32: 0.1028 S33: 0.0345 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 501 A 627 REMARK 3 ORIGIN FOR THE GROUP (A): -31.9117 -14.7742 -1.5234 REMARK 3 T TENSOR REMARK 3 T11: 0.0619 T22: 0.0415 REMARK 3 T33: 0.0219 T12: 0.0347 REMARK 3 T13: 0.0122 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.2198 L22: 0.1098 REMARK 3 L33: 0.2740 L12: 0.0994 REMARK 3 L13: 0.0488 L23: -0.0639 REMARK 3 S TENSOR REMARK 3 S11: -0.0003 S12: -0.0088 S13: -0.0273 REMARK 3 S21: -0.0002 S22: -0.0399 S23: -0.0156 REMARK 3 S31: 0.0781 S32: 0.0631 S33: 0.0403 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4KM8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079514. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26211 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.51700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG 3350, 0.15M AMMONIUM TARTRATE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.30550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.30550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.13800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.22600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.13800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.22600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.30550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.13800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.22600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.30550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.13800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.22600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 SER A 7 REMARK 465 GLY A 8 REMARK 465 ALA A 9 REMARK 465 PRO A 10 REMARK 465 GLY A 11 REMARK 465 PRO A 12 REMARK 465 THR A 13 REMARK 465 ALA A 14 REMARK 465 PRO A 15 REMARK 465 PRO A 16 REMARK 465 ALA A 17 REMARK 465 PRO A 18 REMARK 465 GLY A 19 REMARK 465 PRO A 20 REMARK 465 THR A 21 REMARK 465 ARG A 280 REMARK 465 PRO A 281 REMARK 465 PRO A 282 REMARK 465 GLU A 283 REMARK 465 ASP A 284 REMARK 465 ASP A 285 REMARK 465 SER A 346 REMARK 465 LEU A 347 REMARK 465 GLU A 348 REMARK 465 SER A 349 REMARK 465 ASP A 350 REMARK 465 SER A 351 REMARK 465 SER A 352 REMARK 465 THR A 353 REMARK 465 ALA A 354 REMARK 465 ILE A 355 REMARK 465 ILE A 356 REMARK 465 PRO A 357 REMARK 465 HIS A 358 REMARK 465 GLU A 359 REMARK 465 LEU A 360 REMARK 465 ILE A 361 REMARK 465 THR A 451 REMARK 465 SER A 452 REMARK 465 PRO A 453 REMARK 465 GLU A 454 REMARK 465 GLU A 455 REMARK 465 PHE A 456 REMARK 465 PRO A 482 REMARK 465 LEU A 483 REMARK 465 HIS A 484 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 279 OG REMARK 470 ARG A 362 CG CD NE CZ NH1 NH2 REMARK 470 SER A 368 OG REMARK 470 LYS A 457 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 383 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 ARG A 388 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 79 81.01 -159.06 REMARK 500 ASN A 83 30.14 71.79 REMARK 500 VAL A 104 -43.97 -136.18 REMARK 500 SER A 170 -151.03 -86.61 REMARK 500 SER A 172 152.62 -44.95 REMARK 500 TRP A 214 -105.01 -107.37 REMARK 500 ARG A 388 -68.34 -121.52 REMARK 500 ARG A 393 -163.66 -112.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL A 58 -10.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KM9 RELATED DB: PDB REMARK 900 RELATED ID: 4KMA RELATED DB: PDB REMARK 900 RELATED ID: 4KMD RELATED DB: PDB REMARK 900 RELATED ID: 4KMH RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 UNP RESIDUES 286-345 ARE DELETION. DBREF 4KM8 A 1 285 UNP Q9UMX1 SUFU_HUMAN 1 285 DBREF 4KM8 A 346 484 UNP Q9UMX1 SUFU_HUMAN 346 484 SEQADV 4KM8 MET A -19 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KM8 GLY A -18 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KM8 SER A -17 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KM8 SER A -16 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KM8 HIS A -15 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KM8 HIS A -14 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KM8 HIS A -13 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KM8 HIS A -12 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KM8 HIS A -11 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KM8 HIS A -10 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KM8 SER A -9 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KM8 SER A -8 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KM8 GLY A -7 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KM8 LEU A -6 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KM8 VAL A -5 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KM8 PRO A -4 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KM8 ARG A -3 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KM8 GLY A -2 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KM8 SER A -1 UNP Q9UMX1 EXPRESSION TAG SEQADV 4KM8 HIS A 0 UNP Q9UMX1 EXPRESSION TAG SEQRES 1 A 444 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 444 LEU VAL PRO ARG GLY SER HIS MET ALA GLU LEU ARG PRO SEQRES 3 A 444 SER GLY ALA PRO GLY PRO THR ALA PRO PRO ALA PRO GLY SEQRES 4 A 444 PRO THR ALA PRO PRO ALA PHE ALA SER LEU PHE PRO PRO SEQRES 5 A 444 GLY LEU HIS ALA ILE TYR GLY GLU CYS ARG ARG LEU TYR SEQRES 6 A 444 PRO ASP GLN PRO ASN PRO LEU GLN VAL THR ALA ILE VAL SEQRES 7 A 444 MLY TYR TRP LEU GLY GLY PRO ASP PRO LEU ASP TYR VAL SEQRES 8 A 444 SER MET TYR ARG ASN VAL GLY SER PRO SER ALA ASN ILE SEQRES 9 A 444 PRO GLU HIS TRP HIS TYR ILE SER PHE GLY LEU SER ASP SEQRES 10 A 444 LEU TYR GLY ASP ASN ARG VAL HIS GLU PHE THR GLY THR SEQRES 11 A 444 ASP GLY PRO SER GLY PHE GLY PHE GLU LEU THR PHE ARG SEQRES 12 A 444 LEU LYS ARG GLU THR GLY GLU SER ALA PRO PRO THR TRP SEQRES 13 A 444 PRO ALA GLU LEU MET GLN GLY LEU ALA ARG TYR VAL PHE SEQRES 14 A 444 GLN SER GLU ASN THR PHE CYS SER GLY ASP HIS VAL SER SEQRES 15 A 444 TRP HIS SER PRO LEU ASP ASN SER GLU SER ARG ILE GLN SEQRES 16 A 444 HIS MET LEU LEU THR GLU ASP PRO GLN MET GLN PRO VAL SEQRES 17 A 444 GLN THR PRO PHE GLY VAL VAL THR PHE LEU GLN ILE VAL SEQRES 18 A 444 GLY VAL CYS THR GLU GLU LEU HIS SER ALA GLN GLN TRP SEQRES 19 A 444 ASN GLY GLN GLY ILE LEU GLU LEU LEU ARG THR VAL PRO SEQRES 20 A 444 ILE ALA GLY GLY PRO TRP LEU ILE THR ASP MET ARG ARG SEQRES 21 A 444 GLY GLU THR ILE PHE GLU ILE ASP PRO HIS LEU GLN GLU SEQRES 22 A 444 ARG VAL ASP LYS GLY ILE GLU THR ASP GLY SER ASN LEU SEQRES 23 A 444 SER GLY VAL SER ALA LYS CYS ALA TRP ASP ASP LEU SER SEQRES 24 A 444 ARG PRO PRO GLU ASP ASP SER LEU GLU SER ASP SER SER SEQRES 25 A 444 THR ALA ILE ILE PRO HIS GLU LEU ILE ARG THR ARG GLN SEQRES 26 A 444 LEU GLU SER VAL HIS LEU LYS PHE ASN GLN GLU SER GLY SEQRES 27 A 444 ALA LEU ILE PRO LEU CYS LEU ARG GLY ARG LEU LEU HIS SEQRES 28 A 444 GLY ARG HIS PHE THR TYR LYS SER ILE THR GLY ASP MET SEQRES 29 A 444 ALA ILE THR PHE VAL SER THR GLY VAL GLU GLY ALA PHE SEQRES 30 A 444 ALA THR GLU GLU HIS PRO TYR ALA ALA HIS GLY PRO TRP SEQRES 31 A 444 LEU GLN ILE LEU LEU THR GLU GLU PHE VAL GLU LYS MET SEQRES 32 A 444 LEU GLU ASP LEU GLU ASP LEU THR SER PRO GLU GLU PHE SEQRES 33 A 444 LYS LEU PRO LYS GLU TYR SER TRP PRO GLU LYS LYS LEU SEQRES 34 A 444 LYS VAL SER ILE LEU PRO ASP VAL VAL PHE ASP SER PRO SEQRES 35 A 444 LEU HIS MODRES 4KM8 MLY A 59 LYS N-DIMETHYL-LYSINE HET MLY A 59 11 HETNAM MLY N-DIMETHYL-LYSINE FORMUL 1 MLY C8 H18 N2 O2 FORMUL 2 HOH *127(H2 O) HELIX 1 1 PHE A 26 PHE A 30 5 5 HELIX 2 2 PRO A 31 TYR A 45 1 15 HELIX 3 3 MLY A 59 GLY A 63 5 5 HELIX 4 4 SER A 79 ASN A 83 5 5 HELIX 5 5 THR A 135 GLU A 152 1 18 HELIX 6 6 CYS A 204 TRP A 214 1 11 HELIX 7 7 ASN A 215 ARG A 224 1 10 HELIX 8 8 THR A 243 ASP A 248 1 6 HELIX 9 9 HIS A 250 GLY A 263 1 14 HELIX 10 10 ASN A 374 ALA A 379 1 6 HELIX 11 11 LEU A 380 ARG A 388 1 9 HELIX 12 12 LEU A 389 GLY A 392 5 4 HELIX 13 13 THR A 436 LEU A 447 1 12 HELIX 14 14 ASP A 476 SER A 481 1 6 SHEET 1 A 7 LEU A 52 THR A 55 0 SHEET 2 A 7 TYR A 70 ASN A 76 -1 O MET A 73 N LEU A 52 SHEET 3 A 7 HIS A 87 PHE A 93 -1 O HIS A 87 N ASN A 76 SHEET 4 A 7 PRO A 113 LYS A 125 -1 O LEU A 124 N TRP A 88 SHEET 5 A 7 GLY A 193 VAL A 203 1 O ILE A 200 N THR A 121 SHEET 6 A 7 HIS A 176 GLU A 181 -1 N THR A 180 O GLN A 199 SHEET 7 A 7 HIS A 160 VAL A 161 -1 N VAL A 161 O MET A 177 SHEET 1 B 6 LEU A 52 THR A 55 0 SHEET 2 B 6 TYR A 70 ASN A 76 -1 O MET A 73 N LEU A 52 SHEET 3 B 6 HIS A 87 PHE A 93 -1 O HIS A 87 N ASN A 76 SHEET 4 B 6 PRO A 113 LYS A 125 -1 O LEU A 124 N TRP A 88 SHEET 5 B 6 GLY A 193 VAL A 203 1 O ILE A 200 N THR A 121 SHEET 6 B 6 VAL A 188 THR A 190 -1 N VAL A 188 O VAL A 195 SHEET 1 C 6 GLY A 268 ALA A 271 0 SHEET 2 C 6 HIS A 394 SER A 399 1 O LYS A 398 N ALA A 271 SHEET 3 C 6 ALA A 405 VAL A 409 -1 O ILE A 406 N TYR A 397 SHEET 4 C 6 TRP A 430 LEU A 434 1 O LEU A 431 N THR A 407 SHEET 5 C 6 TYR A 424 HIS A 427 -1 N ALA A 425 O GLN A 432 SHEET 6 C 6 ARG A 364 GLN A 365 -1 N ARG A 364 O ALA A 426 SHEET 1 D 4 CYS A 273 ASP A 277 0 SHEET 2 D 4 VAL A 369 PHE A 373 -1 O LYS A 372 N ALA A 274 SHEET 3 D 4 LEU A 469 ILE A 473 1 O LYS A 470 N LEU A 371 SHEET 4 D 4 LYS A 460 TRP A 464 -1 N LYS A 460 O ILE A 473 LINK C VAL A 58 N MLY A 59 1555 1555 1.34 LINK C MLY A 59 N TYR A 60 1555 1555 1.32 CISPEP 1 ALA A 229 GLY A 230 0 -3.21 CISPEP 2 GLU A 448 ASP A 449 0 2.81 CISPEP 3 ASP A 449 LEU A 450 0 5.81 CISPEP 4 LEU A 458 PRO A 459 0 0.80 CRYST1 76.276 122.452 118.611 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013110 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008166 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008431 0.00000