data_4KMG # _entry.id 4KMG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4KMG pdb_00004kmg 10.2210/pdb4kmg/pdb RCSB RCSB079521 ? ? WWPDB D_1000079521 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4EIC 'cytochrome c6 from the same organism' unspecified PDB 4EIE 'cytochrome c6C from the same organism' unspecified PDB 4EID 'cytochrome c6 Q57V mutant from the same organism' unspecified PDB 4EIF 'cytochrome c6C L50Q mutant from the same organism' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4KMG _pdbx_database_status.recvd_initial_deposition_date 2013-05-08 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zatwarnicki, P.' 1 'Krzywda, S.' 2 'Barciszewski, J.' 3 'Jaskolski, M.' 4 'Szczepaniak, A.' 5 # _citation.id primary _citation.title 'Cytochrome c6B of Synechococcus sp. WH 8102 - Crystal structure and basic properties of novel c6-like family representative.' _citation.journal_abbrev Biochem.Biophys.Res.Commun. _citation.journal_volume 443 _citation.page_first 1131 _citation.page_last 1135 _citation.year 2014 _citation.journal_id_ASTM BBRCA9 _citation.country US _citation.journal_id_ISSN 0006-291X _citation.journal_id_CSD 0146 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24216109 _citation.pdbx_database_id_DOI 10.1016/j.bbrc.2013.10.167 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zatwarnicki, P.' 1 ? primary 'Barciszewski, J.' 2 ? primary 'Krzywda, S.' 3 ? primary 'Jaskolski, M.' 4 ? primary 'Kolesinski, P.' 5 ? primary 'Szczepaniak, A.' 6 ? # _cell.entry_id 4KMG _cell.length_a 106.110 _cell.length_b 28.980 _cell.length_c 24.680 _cell.angle_alpha 90.00 _cell.angle_beta 92.30 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4KMG _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cytochrome C6 (Soluble cytochrome F) (Cytochrome c553)' 9177.280 1 ? ? ? ? 2 non-polymer syn 'HEME C' 618.503 1 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 water nat water 18.015 95 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ETSGEGAVLFGQHCAGCHVNGGNIIRRGKNLKLATLKRQGLDSTEAIASIARKGIGQMSGYGDKLGEGGDQLVAGWILEQ AQNAWTQG ; _entity_poly.pdbx_seq_one_letter_code_can ;ETSGEGAVLFGQHCAGCHVNGGNIIRRGKNLKLATLKRQGLDSTEAIASIARKGIGQMSGYGDKLGEGGDQLVAGWILEQ AQNAWTQG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 THR n 1 3 SER n 1 4 GLY n 1 5 GLU n 1 6 GLY n 1 7 ALA n 1 8 VAL n 1 9 LEU n 1 10 PHE n 1 11 GLY n 1 12 GLN n 1 13 HIS n 1 14 CYS n 1 15 ALA n 1 16 GLY n 1 17 CYS n 1 18 HIS n 1 19 VAL n 1 20 ASN n 1 21 GLY n 1 22 GLY n 1 23 ASN n 1 24 ILE n 1 25 ILE n 1 26 ARG n 1 27 ARG n 1 28 GLY n 1 29 LYS n 1 30 ASN n 1 31 LEU n 1 32 LYS n 1 33 LEU n 1 34 ALA n 1 35 THR n 1 36 LEU n 1 37 LYS n 1 38 ARG n 1 39 GLN n 1 40 GLY n 1 41 LEU n 1 42 ASP n 1 43 SER n 1 44 THR n 1 45 GLU n 1 46 ALA n 1 47 ILE n 1 48 ALA n 1 49 SER n 1 50 ILE n 1 51 ALA n 1 52 ARG n 1 53 LYS n 1 54 GLY n 1 55 ILE n 1 56 GLY n 1 57 GLN n 1 58 MET n 1 59 SER n 1 60 GLY n 1 61 TYR n 1 62 GLY n 1 63 ASP n 1 64 LYS n 1 65 LEU n 1 66 GLY n 1 67 GLU n 1 68 GLY n 1 69 GLY n 1 70 ASP n 1 71 GLN n 1 72 LEU n 1 73 VAL n 1 74 ALA n 1 75 GLY n 1 76 TRP n 1 77 ILE n 1 78 LEU n 1 79 GLU n 1 80 GLN n 1 81 ALA n 1 82 GLN n 1 83 ASN n 1 84 ALA n 1 85 TRP n 1 86 THR n 1 87 GLN n 1 88 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'NP_897609, petJ, SYNW1516' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain WH8102 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Synechococcus sp.' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 84588 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain DH5a _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pUC19 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q7U624_SYNPX _struct_ref.pdbx_db_accession Q7U624 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ETSGEGAVLFGQHCAGCHVNGGNIIRRGKNLKLATLKRQGLDSTEAIASIARKGIGQMSGYGDKLGEGGDQLVAGWILEQ AQNAWTQG ; _struct_ref.pdbx_align_begin 23 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4KMG _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 88 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q7U624 _struct_ref_seq.db_align_beg 23 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 110 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 88 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HEC non-polymer . 'HEME C' ? 'C34 H34 Fe N4 O4' 618.503 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4KMG _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.07 _exptl_crystal.density_percent_sol 40.46 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '2.2 M sodium malonate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RAYONIX MX225HE' _diffrn_detector.pdbx_collection_date 2012-12-15 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si-111 crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91841 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'BESSY BEAMLINE 14.2' _diffrn_source.pdbx_synchrotron_site BESSY _diffrn_source.pdbx_synchrotron_beamline 14.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.91841 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4KMG _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 27.95 _reflns.d_resolution_high 1.40 _reflns.number_obs 14663 _reflns.number_all 14665 _reflns.percent_possible_obs 97.9 _reflns.pdbx_Rmerge_I_obs 0.059 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.8 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.40 _reflns_shell.d_res_low 1.49 _reflns_shell.percent_possible_all 90.1 _reflns_shell.Rmerge_I_obs 0.559 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.02 _reflns_shell.pdbx_redundancy 3.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4KMG _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 13712 _refine.ls_number_reflns_all 13712 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 27.95 _refine.ls_d_res_high 1.40 _refine.ls_percent_reflns_obs 97.90 _refine.ls_R_factor_obs 0.12398 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.12003 _refine.ls_R_factor_R_free 0.18102 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 6.5 _refine.ls_number_reflns_R_free 950 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.979 _refine.correlation_coeff_Fo_to_Fc_free 0.950 _refine.B_iso_mean 15.413 _refine.aniso_B[1][1] 0.56 _refine.aniso_B[2][2] 0.29 _refine.aniso_B[3][3] -0.85 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] -0.02 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method R-FREE _refine.details ;ANISOTROPIC REFINEMENT WITH STEREOCHEMICAL RESTRAINTS. HYDROGEN ATO WERE ADDED AT RIDING POSITIONS. THE SODIUM ION LIES ON A COMMON TWO FOLD AXIS. THE HEME LIBRARY USED IN THE REFINEMENT WAS CREATED BASE STEREOCHEMICAL PARAMETERS DERIVED FROM THE CAMBRIDGE STRUCTURAL DAT ; _refine.pdbx_starting_model 'PDB ENTRY 4EIF' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.061 _refine.pdbx_overall_ESU_R_Free 0.063 _refine.overall_SU_ML 0.041 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.365 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 643 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 44 _refine_hist.number_atoms_solvent 95 _refine_hist.number_atoms_total 782 _refine_hist.d_res_high 1.40 _refine_hist.d_res_low 27.95 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.019 ? 719 'X-RAY DIFFRACTION' ? r_bond_other_d 0.004 0.020 ? 677 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.769 2.015 ? 968 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.965 3.003 ? 1538 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.020 5.000 ? 87 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 38.200 24.375 ? 32 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.451 15.000 ? 117 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 22.019 15.000 ? 6 'X-RAY DIFFRACTION' ? r_chiral_restr 0.116 0.200 ? 92 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.019 0.033 ? 854 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.026 0.032 ? 174 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.946 1.342 ? 351 'X-RAY DIFFRACTION' ? r_mcbond_other 1.942 1.341 ? 350 'X-RAY DIFFRACTION' ? r_mcangle_it 2.313 2.025 ? 437 'X-RAY DIFFRACTION' ? r_scbond_it 3.152 1.532 ? 365 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 4.309 3.000 ? 1393 'X-RAY DIFFRACTION' ? r_sphericity_free 22.466 5.000 ? 39 'X-RAY DIFFRACTION' ? r_sphericity_bonded 8.977 5.000 ? 1438 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.401 _refine_ls_shell.d_res_low 1.437 _refine_ls_shell.number_reflns_R_work 843 _refine_ls_shell.R_factor_R_work 0.207 _refine_ls_shell.percent_reflns_obs 82.72 _refine_ls_shell.R_factor_R_free 0.308 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 57 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 4KMG _struct.title 'Crystal structure of cytochrome c6B from Synechococcus sp. WH8102' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4KMG _struct_keywords.pdbx_keywords 'ELECTRON TRANSPORT' _struct_keywords.text 'cytochrome c6, ELECTRON TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 4 ? CYS A 14 ? GLY A 4 CYS A 14 1 ? 11 HELX_P HELX_P2 2 CYS A 14 ? VAL A 19 ? CYS A 14 VAL A 19 1 ? 6 HELX_P HELX_P3 3 ASN A 20 ? GLY A 22 ? ASN A 20 GLY A 22 5 ? 3 HELX_P HELX_P4 4 LYS A 32 ? GLN A 39 ? LYS A 32 GLN A 39 1 ? 8 HELX_P HELX_P5 5 SER A 43 ? LYS A 53 ? SER A 43 LYS A 53 1 ? 11 HELX_P HELX_P6 6 GLY A 68 ? ASN A 83 ? GLY A 68 ASN A 83 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A CYS 14 SG ? ? ? 1_555 B HEC . CAB ? ? A CYS 14 A HEC 101 1_555 ? ? ? ? ? ? ? 1.864 ? ? covale2 covale none ? A CYS 17 SG ? ? ? 1_555 B HEC . CAC ? ? A CYS 17 A HEC 101 1_555 ? ? ? ? ? ? ? 1.832 ? ? metalc1 metalc ? ? A HIS 18 NE2 ? ? ? 1_555 B HEC . FE ? ? A HIS 18 A HEC 101 1_555 ? ? ? ? ? ? ? 2.046 ? ? metalc2 metalc ? ? A MET 58 SD ? ? ? 1_555 B HEC . FE ? ? A MET 58 A HEC 101 1_555 ? ? ? ? ? ? ? 2.315 ? ? metalc3 metalc ? ? A ASN 83 O ? ? ? 1_555 C NA . NA ? ? A ASN 83 A NA 102 1_555 ? ? ? ? ? ? ? 2.235 ? ? metalc4 metalc ? ? A THR 86 OG1 ? ? ? 1_555 C NA . NA ? ? A THR 86 A NA 102 1_555 ? ? ? ? ? ? ? 2.369 ? ? metalc5 metalc ? ? A THR 86 O ? ? ? 1_555 C NA . NA ? ? A THR 86 A NA 102 1_555 ? ? ? ? ? ? ? 2.631 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 54 ? ILE A 55 ? GLY A 54 ILE A 55 A 2 MET A 58 ? SER A 59 ? MET A 58 SER A 59 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id ILE _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 55 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id ILE _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 55 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id MET _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 58 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id MET _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 58 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A HEC 101 ? 23 'BINDING SITE FOR RESIDUE HEC A 101' AC2 Software A NA 102 ? 4 'BINDING SITE FOR RESIDUE NA A 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 23 HIS A 13 ? HIS A 13 . ? 1_555 ? 2 AC1 23 CYS A 14 ? CYS A 14 . ? 1_555 ? 3 AC1 23 CYS A 17 ? CYS A 17 . ? 1_555 ? 4 AC1 23 HIS A 18 ? HIS A 18 . ? 1_555 ? 5 AC1 23 ASN A 23 ? ASN A 23 . ? 1_555 ? 6 AC1 23 ILE A 25 ? ILE A 25 . ? 1_555 ? 7 AC1 23 ARG A 26 ? ARG A 26 . ? 1_555 ? 8 AC1 23 LYS A 29 ? LYS A 29 . ? 1_555 ? 9 AC1 23 ASN A 30 ? ASN A 30 . ? 1_555 ? 10 AC1 23 LEU A 31 ? LEU A 31 . ? 1_555 ? 11 AC1 23 THR A 35 ? THR A 35 . ? 1_555 ? 12 AC1 23 GLN A 39 ? GLN A 39 . ? 1_555 ? 13 AC1 23 LEU A 41 ? LEU A 41 . ? 1_555 ? 14 AC1 23 ILE A 50 ? ILE A 50 . ? 1_555 ? 15 AC1 23 ILE A 55 ? ILE A 55 . ? 1_555 ? 16 AC1 23 GLY A 56 ? GLY A 56 . ? 1_555 ? 17 AC1 23 GLN A 57 ? GLN A 57 . ? 1_555 ? 18 AC1 23 MET A 58 ? MET A 58 . ? 1_555 ? 19 AC1 23 TYR A 61 ? TYR A 61 . ? 1_555 ? 20 AC1 23 ASP A 63 ? ASP A 63 . ? 4_445 ? 21 AC1 23 ILE A 77 ? ILE A 77 . ? 1_555 ? 22 AC1 23 HOH D . ? HOH A 218 . ? 1_555 ? 23 AC1 23 HOH D . ? HOH A 273 . ? 1_554 ? 24 AC2 4 ASN A 83 ? ASN A 83 . ? 1_555 ? 25 AC2 4 ASN A 83 ? ASN A 83 . ? 2_556 ? 26 AC2 4 THR A 86 ? THR A 86 . ? 2_556 ? 27 AC2 4 THR A 86 ? THR A 86 . ? 1_555 ? # _database_PDB_matrix.entry_id 4KMG _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4KMG _atom_sites.fract_transf_matrix[1][1] 0.009424 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000379 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.034507 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.040551 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C FE N NA O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 1 1 GLU GLU A . n A 1 2 THR 2 2 2 THR THR A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 PHE 10 10 10 PHE PHE A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 GLN 12 12 12 GLN GLN A . n A 1 13 HIS 13 13 13 HIS HIS A . n A 1 14 CYS 14 14 14 CYS CYS A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 CYS 17 17 17 CYS CYS A . n A 1 18 HIS 18 18 18 HIS HIS A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 ASN 23 23 23 ASN ASN A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 ILE 25 25 25 ILE ILE A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 ARG 27 27 27 ARG ARG A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 ASN 30 30 30 ASN ASN A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 ARG 38 38 38 ARG ARG A . n A 1 39 GLN 39 39 39 GLN GLN A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 ASP 42 42 42 ASP ASP A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 THR 44 44 44 THR THR A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 ARG 52 52 52 ARG ARG A . n A 1 53 LYS 53 53 53 LYS LYS A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 ILE 55 55 55 ILE ILE A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 GLN 57 57 57 GLN GLN A . n A 1 58 MET 58 58 58 MET MET A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 TYR 61 61 61 TYR TYR A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 ASP 63 63 63 ASP ASP A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 ASP 70 70 70 ASP ASP A . n A 1 71 GLN 71 71 71 GLN GLN A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 ALA 74 74 74 ALA ALA A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 TRP 76 76 76 TRP TRP A . n A 1 77 ILE 77 77 77 ILE ILE A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 GLN 80 80 80 GLN GLN A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 GLN 82 82 82 GLN GLN A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 TRP 85 85 85 TRP TRP A . n A 1 86 THR 86 86 86 THR THR A . n A 1 87 GLN 87 87 87 GLN GLN A . n A 1 88 GLY 88 88 88 GLY GLY A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC 1 101 89 HEC HEM A . C 3 NA 1 102 1 NA NA A . D 4 HOH 1 201 2 HOH HOH A . D 4 HOH 2 202 3 HOH HOH A . D 4 HOH 3 203 4 HOH HOH A . D 4 HOH 4 204 5 HOH HOH A . D 4 HOH 5 205 6 HOH HOH A . D 4 HOH 6 206 7 HOH HOH A . D 4 HOH 7 207 8 HOH HOH A . D 4 HOH 8 208 9 HOH HOH A . D 4 HOH 9 209 10 HOH HOH A . D 4 HOH 10 210 11 HOH HOH A . D 4 HOH 11 211 12 HOH HOH A . D 4 HOH 12 212 13 HOH HOH A . D 4 HOH 13 213 14 HOH HOH A . D 4 HOH 14 214 15 HOH HOH A . D 4 HOH 15 215 16 HOH HOH A . D 4 HOH 16 216 17 HOH HOH A . D 4 HOH 17 217 18 HOH HOH A . D 4 HOH 18 218 19 HOH HOH A . D 4 HOH 19 219 20 HOH HOH A . D 4 HOH 20 220 21 HOH HOH A . D 4 HOH 21 221 22 HOH HOH A . D 4 HOH 22 222 23 HOH HOH A . D 4 HOH 23 223 24 HOH HOH A . D 4 HOH 24 224 25 HOH HOH A . D 4 HOH 25 225 26 HOH HOH A . D 4 HOH 26 226 27 HOH HOH A . D 4 HOH 27 227 28 HOH HOH A . D 4 HOH 28 228 29 HOH HOH A . D 4 HOH 29 229 30 HOH HOH A . D 4 HOH 30 230 31 HOH HOH A . D 4 HOH 31 231 32 HOH HOH A . D 4 HOH 32 232 33 HOH HOH A . D 4 HOH 33 233 34 HOH HOH A . D 4 HOH 34 234 35 HOH HOH A . D 4 HOH 35 235 36 HOH HOH A . D 4 HOH 36 236 37 HOH HOH A . D 4 HOH 37 237 38 HOH HOH A . D 4 HOH 38 238 39 HOH HOH A . D 4 HOH 39 239 40 HOH HOH A . D 4 HOH 40 240 41 HOH HOH A . D 4 HOH 41 241 42 HOH HOH A . D 4 HOH 42 242 43 HOH HOH A . D 4 HOH 43 243 44 HOH HOH A . D 4 HOH 44 244 45 HOH HOH A . D 4 HOH 45 245 46 HOH HOH A . D 4 HOH 46 246 47 HOH HOH A . D 4 HOH 47 247 48 HOH HOH A . D 4 HOH 48 248 49 HOH HOH A . D 4 HOH 49 249 50 HOH HOH A . D 4 HOH 50 250 51 HOH HOH A . D 4 HOH 51 251 52 HOH HOH A . D 4 HOH 52 252 53 HOH HOH A . D 4 HOH 53 253 54 HOH HOH A . D 4 HOH 54 254 55 HOH HOH A . D 4 HOH 55 255 56 HOH HOH A . D 4 HOH 56 256 57 HOH HOH A . D 4 HOH 57 257 58 HOH HOH A . D 4 HOH 58 258 59 HOH HOH A . D 4 HOH 59 259 60 HOH HOH A . D 4 HOH 60 260 61 HOH HOH A . D 4 HOH 61 261 62 HOH HOH A . D 4 HOH 62 262 63 HOH HOH A . D 4 HOH 63 263 64 HOH HOH A . D 4 HOH 64 264 65 HOH HOH A . D 4 HOH 65 265 66 HOH HOH A . D 4 HOH 66 266 68 HOH HOH A . D 4 HOH 67 267 69 HOH HOH A . D 4 HOH 68 268 70 HOH HOH A . D 4 HOH 69 269 71 HOH HOH A . D 4 HOH 70 270 72 HOH HOH A . D 4 HOH 71 271 73 HOH HOH A . D 4 HOH 72 272 74 HOH HOH A . D 4 HOH 73 273 75 HOH HOH A . D 4 HOH 74 274 76 HOH HOH A . D 4 HOH 75 275 77 HOH HOH A . D 4 HOH 76 276 78 HOH HOH A . D 4 HOH 77 277 79 HOH HOH A . D 4 HOH 78 278 80 HOH HOH A . D 4 HOH 79 279 81 HOH HOH A . D 4 HOH 80 280 82 HOH HOH A . D 4 HOH 81 281 83 HOH HOH A . D 4 HOH 82 282 84 HOH HOH A . D 4 HOH 83 283 86 HOH HOH A . D 4 HOH 84 284 87 HOH HOH A . D 4 HOH 85 285 88 HOH HOH A . D 4 HOH 86 286 89 HOH HOH A . D 4 HOH 87 287 91 HOH HOH A . D 4 HOH 88 288 92 HOH HOH A . D 4 HOH 89 289 93 HOH HOH A . D 4 HOH 90 290 94 HOH HOH A . D 4 HOH 91 291 95 HOH HOH A . D 4 HOH 92 292 96 HOH HOH A . D 4 HOH 93 293 97 HOH HOH A . D 4 HOH 94 294 98 HOH HOH A . D 4 HOH 95 295 99 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D 2 1,2 A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 3140 ? 2 MORE -67 ? 2 'SSA (A^2)' 10020 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 -0.9904526397 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 24.6601176714 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A NA 102 ? C NA . 2 1 A HOH 284 ? D HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 18 ? A HIS 18 ? 1_555 FE ? B HEC . ? A HEC 101 ? 1_555 NA ? B HEC . ? A HEC 101 ? 1_555 90.5 ? 2 NE2 ? A HIS 18 ? A HIS 18 ? 1_555 FE ? B HEC . ? A HEC 101 ? 1_555 NB ? B HEC . ? A HEC 101 ? 1_555 90.0 ? 3 NA ? B HEC . ? A HEC 101 ? 1_555 FE ? B HEC . ? A HEC 101 ? 1_555 NB ? B HEC . ? A HEC 101 ? 1_555 90.1 ? 4 NE2 ? A HIS 18 ? A HIS 18 ? 1_555 FE ? B HEC . ? A HEC 101 ? 1_555 NC ? B HEC . ? A HEC 101 ? 1_555 88.2 ? 5 NA ? B HEC . ? A HEC 101 ? 1_555 FE ? B HEC . ? A HEC 101 ? 1_555 NC ? B HEC . ? A HEC 101 ? 1_555 178.7 ? 6 NB ? B HEC . ? A HEC 101 ? 1_555 FE ? B HEC . ? A HEC 101 ? 1_555 NC ? B HEC . ? A HEC 101 ? 1_555 89.9 ? 7 NE2 ? A HIS 18 ? A HIS 18 ? 1_555 FE ? B HEC . ? A HEC 101 ? 1_555 ND ? B HEC . ? A HEC 101 ? 1_555 91.2 ? 8 NA ? B HEC . ? A HEC 101 ? 1_555 FE ? B HEC . ? A HEC 101 ? 1_555 ND ? B HEC . ? A HEC 101 ? 1_555 89.8 ? 9 NB ? B HEC . ? A HEC 101 ? 1_555 FE ? B HEC . ? A HEC 101 ? 1_555 ND ? B HEC . ? A HEC 101 ? 1_555 178.8 ? 10 NC ? B HEC . ? A HEC 101 ? 1_555 FE ? B HEC . ? A HEC 101 ? 1_555 ND ? B HEC . ? A HEC 101 ? 1_555 90.1 ? 11 NE2 ? A HIS 18 ? A HIS 18 ? 1_555 FE ? B HEC . ? A HEC 101 ? 1_555 SD ? A MET 58 ? A MET 58 ? 1_555 176.5 ? 12 NA ? B HEC . ? A HEC 101 ? 1_555 FE ? B HEC . ? A HEC 101 ? 1_555 SD ? A MET 58 ? A MET 58 ? 1_555 86.0 ? 13 NB ? B HEC . ? A HEC 101 ? 1_555 FE ? B HEC . ? A HEC 101 ? 1_555 SD ? A MET 58 ? A MET 58 ? 1_555 90.5 ? 14 NC ? B HEC . ? A HEC 101 ? 1_555 FE ? B HEC . ? A HEC 101 ? 1_555 SD ? A MET 58 ? A MET 58 ? 1_555 95.2 ? 15 ND ? B HEC . ? A HEC 101 ? 1_555 FE ? B HEC . ? A HEC 101 ? 1_555 SD ? A MET 58 ? A MET 58 ? 1_555 88.3 ? 16 O ? A ASN 83 ? A ASN 83 ? 1_555 NA ? C NA . ? A NA 102 ? 1_555 OG1 ? A THR 86 ? A THR 86 ? 1_555 105.3 ? 17 O ? A ASN 83 ? A ASN 83 ? 1_555 NA ? C NA . ? A NA 102 ? 1_555 O ? A THR 86 ? A THR 86 ? 1_555 79.9 ? 18 OG1 ? A THR 86 ? A THR 86 ? 1_555 NA ? C NA . ? A NA 102 ? 1_555 O ? A THR 86 ? A THR 86 ? 1_555 72.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-03-26 2 'Structure model' 1 1 2017-11-15 3 'Structure model' 2 0 2021-03-10 4 'Structure model' 2 1 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Refinement description' 3 3 'Structure model' 'Atomic model' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Non-polymer description' 7 3 'Structure model' 'Structure summary' 8 4 'Structure model' Advisory 9 4 'Structure model' 'Data collection' 10 4 'Structure model' 'Database references' 11 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_unobs_or_zero_occ_atoms 2 2 'Structure model' software 3 3 'Structure model' atom_site 4 3 'Structure model' atom_site_anisotrop 5 3 'Structure model' chem_comp 6 3 'Structure model' entity 7 3 'Structure model' pdbx_entity_nonpoly 8 3 'Structure model' pdbx_nonpoly_scheme 9 3 'Structure model' pdbx_struct_conn_angle 10 3 'Structure model' struct_conn 11 3 'Structure model' struct_conn_type 12 3 'Structure model' struct_site 13 4 'Structure model' chem_comp_atom 14 4 'Structure model' chem_comp_bond 15 4 'Structure model' database_2 16 4 'Structure model' pdbx_initial_refinement_model 17 4 'Structure model' pdbx_unobs_or_zero_occ_atoms # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_software.name' 2 3 'Structure model' '_atom_site.B_iso_or_equiv' 3 3 'Structure model' '_atom_site.Cartn_x' 4 3 'Structure model' '_atom_site.Cartn_y' 5 3 'Structure model' '_atom_site.Cartn_z' 6 3 'Structure model' '_atom_site.auth_atom_id' 7 3 'Structure model' '_atom_site.auth_comp_id' 8 3 'Structure model' '_atom_site.label_atom_id' 9 3 'Structure model' '_atom_site.label_comp_id' 10 3 'Structure model' '_atom_site.type_symbol' 11 3 'Structure model' '_atom_site_anisotrop.U[1][1]' 12 3 'Structure model' '_atom_site_anisotrop.U[1][2]' 13 3 'Structure model' '_atom_site_anisotrop.U[1][3]' 14 3 'Structure model' '_atom_site_anisotrop.U[2][2]' 15 3 'Structure model' '_atom_site_anisotrop.U[2][3]' 16 3 'Structure model' '_atom_site_anisotrop.U[3][3]' 17 3 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 18 3 'Structure model' '_atom_site_anisotrop.pdbx_auth_comp_id' 19 3 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 20 3 'Structure model' '_atom_site_anisotrop.pdbx_label_comp_id' 21 3 'Structure model' '_atom_site_anisotrop.type_symbol' 22 3 'Structure model' '_chem_comp.formula' 23 3 'Structure model' '_chem_comp.formula_weight' 24 3 'Structure model' '_chem_comp.id' 25 3 'Structure model' '_chem_comp.name' 26 3 'Structure model' '_chem_comp.pdbx_synonyms' 27 3 'Structure model' '_entity.formula_weight' 28 3 'Structure model' '_entity.pdbx_description' 29 3 'Structure model' '_pdbx_entity_nonpoly.comp_id' 30 3 'Structure model' '_pdbx_entity_nonpoly.name' 31 3 'Structure model' '_pdbx_nonpoly_scheme.mon_id' 32 3 'Structure model' '_pdbx_nonpoly_scheme.pdb_mon_id' 33 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 34 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 35 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 36 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 37 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 38 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 39 3 'Structure model' '_struct_conn.conn_type_id' 40 3 'Structure model' '_struct_conn.id' 41 3 'Structure model' '_struct_conn.pdbx_dist_value' 42 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 43 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 44 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 45 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 46 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 47 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 48 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 49 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 50 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 51 3 'Structure model' '_struct_conn_type.id' 52 3 'Structure model' '_struct_site.details' 53 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 54 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 55 3 'Structure model' '_struct_site.pdbx_auth_seq_id' 56 4 'Structure model' '_database_2.pdbx_DOI' 57 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345dtb 'data collection' . ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.6.0117 ? 3 XDS 'data reduction' . ? 4 XDS 'data scaling' . ? 5 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LYS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 29 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -100.08 _pdbx_validate_torsion.psi 53.39 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A LYS 53 ? CG ? A LYS 53 CG 2 1 Y 0 A LYS 53 ? CD ? A LYS 53 CD 3 1 Y 0 A LYS 53 ? CE ? A LYS 53 CE 4 1 Y 0 A LYS 53 ? NZ ? A LYS 53 NZ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HEC FE FE N N 137 HEC CHA C N N 138 HEC CHB C N N 139 HEC CHC C N N 140 HEC CHD C N N 141 HEC NA N Y N 142 HEC C1A C Y N 143 HEC C2A C Y N 144 HEC C3A C Y N 145 HEC C4A C Y N 146 HEC CMA C N N 147 HEC CAA C N N 148 HEC CBA C N N 149 HEC CGA C N N 150 HEC O1A O N N 151 HEC O2A O N N 152 HEC NB N Y N 153 HEC C1B C Y N 154 HEC C2B C Y N 155 HEC C3B C Y N 156 HEC C4B C Y N 157 HEC CMB C N N 158 HEC CAB C N N 159 HEC CBB C N N 160 HEC NC N Y N 161 HEC C1C C Y N 162 HEC C2C C Y N 163 HEC C3C C Y N 164 HEC C4C C Y N 165 HEC CMC C N N 166 HEC CAC C N N 167 HEC CBC C N N 168 HEC ND N Y N 169 HEC C1D C Y N 170 HEC C2D C Y N 171 HEC C3D C Y N 172 HEC C4D C Y N 173 HEC CMD C N N 174 HEC CAD C N N 175 HEC CBD C N N 176 HEC CGD C N N 177 HEC O1D O N N 178 HEC O2D O N N 179 HEC HHA H N N 180 HEC HHB H N N 181 HEC HHC H N N 182 HEC HHD H N N 183 HEC HMA1 H N N 184 HEC HMA2 H N N 185 HEC HMA3 H N N 186 HEC HAA1 H N N 187 HEC HAA2 H N N 188 HEC HBA1 H N N 189 HEC HBA2 H N N 190 HEC H2A H N N 191 HEC HMB1 H N N 192 HEC HMB2 H N N 193 HEC HMB3 H N N 194 HEC HAB H N N 195 HEC HBB1 H N N 196 HEC HBB2 H N N 197 HEC HBB3 H N N 198 HEC HMC1 H N N 199 HEC HMC2 H N N 200 HEC HMC3 H N N 201 HEC HAC H N N 202 HEC HBC1 H N N 203 HEC HBC2 H N N 204 HEC HBC3 H N N 205 HEC HMD1 H N N 206 HEC HMD2 H N N 207 HEC HMD3 H N N 208 HEC HAD1 H N N 209 HEC HAD2 H N N 210 HEC HBD1 H N N 211 HEC HBD2 H N N 212 HEC H2D H N N 213 HIS N N N N 214 HIS CA C N S 215 HIS C C N N 216 HIS O O N N 217 HIS CB C N N 218 HIS CG C Y N 219 HIS ND1 N Y N 220 HIS CD2 C Y N 221 HIS CE1 C Y N 222 HIS NE2 N Y N 223 HIS OXT O N N 224 HIS H H N N 225 HIS H2 H N N 226 HIS HA H N N 227 HIS HB2 H N N 228 HIS HB3 H N N 229 HIS HD1 H N N 230 HIS HD2 H N N 231 HIS HE1 H N N 232 HIS HE2 H N N 233 HIS HXT H N N 234 HOH O O N N 235 HOH H1 H N N 236 HOH H2 H N N 237 ILE N N N N 238 ILE CA C N S 239 ILE C C N N 240 ILE O O N N 241 ILE CB C N S 242 ILE CG1 C N N 243 ILE CG2 C N N 244 ILE CD1 C N N 245 ILE OXT O N N 246 ILE H H N N 247 ILE H2 H N N 248 ILE HA H N N 249 ILE HB H N N 250 ILE HG12 H N N 251 ILE HG13 H N N 252 ILE HG21 H N N 253 ILE HG22 H N N 254 ILE HG23 H N N 255 ILE HD11 H N N 256 ILE HD12 H N N 257 ILE HD13 H N N 258 ILE HXT H N N 259 LEU N N N N 260 LEU CA C N S 261 LEU C C N N 262 LEU O O N N 263 LEU CB C N N 264 LEU CG C N N 265 LEU CD1 C N N 266 LEU CD2 C N N 267 LEU OXT O N N 268 LEU H H N N 269 LEU H2 H N N 270 LEU HA H N N 271 LEU HB2 H N N 272 LEU HB3 H N N 273 LEU HG H N N 274 LEU HD11 H N N 275 LEU HD12 H N N 276 LEU HD13 H N N 277 LEU HD21 H N N 278 LEU HD22 H N N 279 LEU HD23 H N N 280 LEU HXT H N N 281 LYS N N N N 282 LYS CA C N S 283 LYS C C N N 284 LYS O O N N 285 LYS CB C N N 286 LYS CG C N N 287 LYS CD C N N 288 LYS CE C N N 289 LYS NZ N N N 290 LYS OXT O N N 291 LYS H H N N 292 LYS H2 H N N 293 LYS HA H N N 294 LYS HB2 H N N 295 LYS HB3 H N N 296 LYS HG2 H N N 297 LYS HG3 H N N 298 LYS HD2 H N N 299 LYS HD3 H N N 300 LYS HE2 H N N 301 LYS HE3 H N N 302 LYS HZ1 H N N 303 LYS HZ2 H N N 304 LYS HZ3 H N N 305 LYS HXT H N N 306 MET N N N N 307 MET CA C N S 308 MET C C N N 309 MET O O N N 310 MET CB C N N 311 MET CG C N N 312 MET SD S N N 313 MET CE C N N 314 MET OXT O N N 315 MET H H N N 316 MET H2 H N N 317 MET HA H N N 318 MET HB2 H N N 319 MET HB3 H N N 320 MET HG2 H N N 321 MET HG3 H N N 322 MET HE1 H N N 323 MET HE2 H N N 324 MET HE3 H N N 325 MET HXT H N N 326 NA NA NA N N 327 PHE N N N N 328 PHE CA C N S 329 PHE C C N N 330 PHE O O N N 331 PHE CB C N N 332 PHE CG C Y N 333 PHE CD1 C Y N 334 PHE CD2 C Y N 335 PHE CE1 C Y N 336 PHE CE2 C Y N 337 PHE CZ C Y N 338 PHE OXT O N N 339 PHE H H N N 340 PHE H2 H N N 341 PHE HA H N N 342 PHE HB2 H N N 343 PHE HB3 H N N 344 PHE HD1 H N N 345 PHE HD2 H N N 346 PHE HE1 H N N 347 PHE HE2 H N N 348 PHE HZ H N N 349 PHE HXT H N N 350 SER N N N N 351 SER CA C N S 352 SER C C N N 353 SER O O N N 354 SER CB C N N 355 SER OG O N N 356 SER OXT O N N 357 SER H H N N 358 SER H2 H N N 359 SER HA H N N 360 SER HB2 H N N 361 SER HB3 H N N 362 SER HG H N N 363 SER HXT H N N 364 THR N N N N 365 THR CA C N S 366 THR C C N N 367 THR O O N N 368 THR CB C N R 369 THR OG1 O N N 370 THR CG2 C N N 371 THR OXT O N N 372 THR H H N N 373 THR H2 H N N 374 THR HA H N N 375 THR HB H N N 376 THR HG1 H N N 377 THR HG21 H N N 378 THR HG22 H N N 379 THR HG23 H N N 380 THR HXT H N N 381 TRP N N N N 382 TRP CA C N S 383 TRP C C N N 384 TRP O O N N 385 TRP CB C N N 386 TRP CG C Y N 387 TRP CD1 C Y N 388 TRP CD2 C Y N 389 TRP NE1 N Y N 390 TRP CE2 C Y N 391 TRP CE3 C Y N 392 TRP CZ2 C Y N 393 TRP CZ3 C Y N 394 TRP CH2 C Y N 395 TRP OXT O N N 396 TRP H H N N 397 TRP H2 H N N 398 TRP HA H N N 399 TRP HB2 H N N 400 TRP HB3 H N N 401 TRP HD1 H N N 402 TRP HE1 H N N 403 TRP HE3 H N N 404 TRP HZ2 H N N 405 TRP HZ3 H N N 406 TRP HH2 H N N 407 TRP HXT H N N 408 TYR N N N N 409 TYR CA C N S 410 TYR C C N N 411 TYR O O N N 412 TYR CB C N N 413 TYR CG C Y N 414 TYR CD1 C Y N 415 TYR CD2 C Y N 416 TYR CE1 C Y N 417 TYR CE2 C Y N 418 TYR CZ C Y N 419 TYR OH O N N 420 TYR OXT O N N 421 TYR H H N N 422 TYR H2 H N N 423 TYR HA H N N 424 TYR HB2 H N N 425 TYR HB3 H N N 426 TYR HD1 H N N 427 TYR HD2 H N N 428 TYR HE1 H N N 429 TYR HE2 H N N 430 TYR HH H N N 431 TYR HXT H N N 432 VAL N N N N 433 VAL CA C N S 434 VAL C C N N 435 VAL O O N N 436 VAL CB C N N 437 VAL CG1 C N N 438 VAL CG2 C N N 439 VAL OXT O N N 440 VAL H H N N 441 VAL H2 H N N 442 VAL HA H N N 443 VAL HB H N N 444 VAL HG11 H N N 445 VAL HG12 H N N 446 VAL HG13 H N N 447 VAL HG21 H N N 448 VAL HG22 H N N 449 VAL HG23 H N N 450 VAL HXT H N N 451 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HEC FE NA sing N N 129 HEC FE NB sing N N 130 HEC FE NC sing N N 131 HEC FE ND sing N N 132 HEC CHA C1A doub N N 133 HEC CHA C4D sing N N 134 HEC CHA HHA sing N N 135 HEC CHB C4A doub N N 136 HEC CHB C1B sing N N 137 HEC CHB HHB sing N N 138 HEC CHC C4B doub N N 139 HEC CHC C1C sing N N 140 HEC CHC HHC sing N N 141 HEC CHD C4C doub N N 142 HEC CHD C1D sing N N 143 HEC CHD HHD sing N N 144 HEC NA C1A sing Y N 145 HEC NA C4A sing Y N 146 HEC C1A C2A sing Y N 147 HEC C2A C3A doub Y N 148 HEC C2A CAA sing N N 149 HEC C3A C4A sing Y N 150 HEC C3A CMA sing N N 151 HEC CMA HMA1 sing N N 152 HEC CMA HMA2 sing N N 153 HEC CMA HMA3 sing N N 154 HEC CAA CBA sing N N 155 HEC CAA HAA1 sing N N 156 HEC CAA HAA2 sing N N 157 HEC CBA CGA sing N N 158 HEC CBA HBA1 sing N N 159 HEC CBA HBA2 sing N N 160 HEC CGA O1A doub N N 161 HEC CGA O2A sing N N 162 HEC O2A H2A sing N N 163 HEC NB C1B sing Y N 164 HEC NB C4B sing Y N 165 HEC C1B C2B doub Y N 166 HEC C2B C3B sing Y N 167 HEC C2B CMB sing N N 168 HEC C3B C4B sing Y N 169 HEC C3B CAB doub N E 170 HEC CMB HMB1 sing N N 171 HEC CMB HMB2 sing N N 172 HEC CMB HMB3 sing N N 173 HEC CAB CBB sing N N 174 HEC CAB HAB sing N N 175 HEC CBB HBB1 sing N N 176 HEC CBB HBB2 sing N N 177 HEC CBB HBB3 sing N N 178 HEC NC C1C sing Y N 179 HEC NC C4C sing Y N 180 HEC C1C C2C doub Y N 181 HEC C2C C3C sing Y N 182 HEC C2C CMC sing N N 183 HEC C3C C4C sing Y N 184 HEC C3C CAC doub N E 185 HEC CMC HMC1 sing N N 186 HEC CMC HMC2 sing N N 187 HEC CMC HMC3 sing N N 188 HEC CAC CBC sing N N 189 HEC CAC HAC sing N N 190 HEC CBC HBC1 sing N N 191 HEC CBC HBC2 sing N N 192 HEC CBC HBC3 sing N N 193 HEC ND C1D sing Y N 194 HEC ND C4D sing Y N 195 HEC C1D C2D doub Y N 196 HEC C2D C3D sing Y N 197 HEC C2D CMD sing N N 198 HEC C3D C4D doub Y N 199 HEC C3D CAD sing N N 200 HEC CMD HMD1 sing N N 201 HEC CMD HMD2 sing N N 202 HEC CMD HMD3 sing N N 203 HEC CAD CBD sing N N 204 HEC CAD HAD1 sing N N 205 HEC CAD HAD2 sing N N 206 HEC CBD CGD sing N N 207 HEC CBD HBD1 sing N N 208 HEC CBD HBD2 sing N N 209 HEC CGD O1D doub N N 210 HEC CGD O2D sing N N 211 HEC O2D H2D sing N N 212 HIS N CA sing N N 213 HIS N H sing N N 214 HIS N H2 sing N N 215 HIS CA C sing N N 216 HIS CA CB sing N N 217 HIS CA HA sing N N 218 HIS C O doub N N 219 HIS C OXT sing N N 220 HIS CB CG sing N N 221 HIS CB HB2 sing N N 222 HIS CB HB3 sing N N 223 HIS CG ND1 sing Y N 224 HIS CG CD2 doub Y N 225 HIS ND1 CE1 doub Y N 226 HIS ND1 HD1 sing N N 227 HIS CD2 NE2 sing Y N 228 HIS CD2 HD2 sing N N 229 HIS CE1 NE2 sing Y N 230 HIS CE1 HE1 sing N N 231 HIS NE2 HE2 sing N N 232 HIS OXT HXT sing N N 233 HOH O H1 sing N N 234 HOH O H2 sing N N 235 ILE N CA sing N N 236 ILE N H sing N N 237 ILE N H2 sing N N 238 ILE CA C sing N N 239 ILE CA CB sing N N 240 ILE CA HA sing N N 241 ILE C O doub N N 242 ILE C OXT sing N N 243 ILE CB CG1 sing N N 244 ILE CB CG2 sing N N 245 ILE CB HB sing N N 246 ILE CG1 CD1 sing N N 247 ILE CG1 HG12 sing N N 248 ILE CG1 HG13 sing N N 249 ILE CG2 HG21 sing N N 250 ILE CG2 HG22 sing N N 251 ILE CG2 HG23 sing N N 252 ILE CD1 HD11 sing N N 253 ILE CD1 HD12 sing N N 254 ILE CD1 HD13 sing N N 255 ILE OXT HXT sing N N 256 LEU N CA sing N N 257 LEU N H sing N N 258 LEU N H2 sing N N 259 LEU CA C sing N N 260 LEU CA CB sing N N 261 LEU CA HA sing N N 262 LEU C O doub N N 263 LEU C OXT sing N N 264 LEU CB CG sing N N 265 LEU CB HB2 sing N N 266 LEU CB HB3 sing N N 267 LEU CG CD1 sing N N 268 LEU CG CD2 sing N N 269 LEU CG HG sing N N 270 LEU CD1 HD11 sing N N 271 LEU CD1 HD12 sing N N 272 LEU CD1 HD13 sing N N 273 LEU CD2 HD21 sing N N 274 LEU CD2 HD22 sing N N 275 LEU CD2 HD23 sing N N 276 LEU OXT HXT sing N N 277 LYS N CA sing N N 278 LYS N H sing N N 279 LYS N H2 sing N N 280 LYS CA C sing N N 281 LYS CA CB sing N N 282 LYS CA HA sing N N 283 LYS C O doub N N 284 LYS C OXT sing N N 285 LYS CB CG sing N N 286 LYS CB HB2 sing N N 287 LYS CB HB3 sing N N 288 LYS CG CD sing N N 289 LYS CG HG2 sing N N 290 LYS CG HG3 sing N N 291 LYS CD CE sing N N 292 LYS CD HD2 sing N N 293 LYS CD HD3 sing N N 294 LYS CE NZ sing N N 295 LYS CE HE2 sing N N 296 LYS CE HE3 sing N N 297 LYS NZ HZ1 sing N N 298 LYS NZ HZ2 sing N N 299 LYS NZ HZ3 sing N N 300 LYS OXT HXT sing N N 301 MET N CA sing N N 302 MET N H sing N N 303 MET N H2 sing N N 304 MET CA C sing N N 305 MET CA CB sing N N 306 MET CA HA sing N N 307 MET C O doub N N 308 MET C OXT sing N N 309 MET CB CG sing N N 310 MET CB HB2 sing N N 311 MET CB HB3 sing N N 312 MET CG SD sing N N 313 MET CG HG2 sing N N 314 MET CG HG3 sing N N 315 MET SD CE sing N N 316 MET CE HE1 sing N N 317 MET CE HE2 sing N N 318 MET CE HE3 sing N N 319 MET OXT HXT sing N N 320 PHE N CA sing N N 321 PHE N H sing N N 322 PHE N H2 sing N N 323 PHE CA C sing N N 324 PHE CA CB sing N N 325 PHE CA HA sing N N 326 PHE C O doub N N 327 PHE C OXT sing N N 328 PHE CB CG sing N N 329 PHE CB HB2 sing N N 330 PHE CB HB3 sing N N 331 PHE CG CD1 doub Y N 332 PHE CG CD2 sing Y N 333 PHE CD1 CE1 sing Y N 334 PHE CD1 HD1 sing N N 335 PHE CD2 CE2 doub Y N 336 PHE CD2 HD2 sing N N 337 PHE CE1 CZ doub Y N 338 PHE CE1 HE1 sing N N 339 PHE CE2 CZ sing Y N 340 PHE CE2 HE2 sing N N 341 PHE CZ HZ sing N N 342 PHE OXT HXT sing N N 343 SER N CA sing N N 344 SER N H sing N N 345 SER N H2 sing N N 346 SER CA C sing N N 347 SER CA CB sing N N 348 SER CA HA sing N N 349 SER C O doub N N 350 SER C OXT sing N N 351 SER CB OG sing N N 352 SER CB HB2 sing N N 353 SER CB HB3 sing N N 354 SER OG HG sing N N 355 SER OXT HXT sing N N 356 THR N CA sing N N 357 THR N H sing N N 358 THR N H2 sing N N 359 THR CA C sing N N 360 THR CA CB sing N N 361 THR CA HA sing N N 362 THR C O doub N N 363 THR C OXT sing N N 364 THR CB OG1 sing N N 365 THR CB CG2 sing N N 366 THR CB HB sing N N 367 THR OG1 HG1 sing N N 368 THR CG2 HG21 sing N N 369 THR CG2 HG22 sing N N 370 THR CG2 HG23 sing N N 371 THR OXT HXT sing N N 372 TRP N CA sing N N 373 TRP N H sing N N 374 TRP N H2 sing N N 375 TRP CA C sing N N 376 TRP CA CB sing N N 377 TRP CA HA sing N N 378 TRP C O doub N N 379 TRP C OXT sing N N 380 TRP CB CG sing N N 381 TRP CB HB2 sing N N 382 TRP CB HB3 sing N N 383 TRP CG CD1 doub Y N 384 TRP CG CD2 sing Y N 385 TRP CD1 NE1 sing Y N 386 TRP CD1 HD1 sing N N 387 TRP CD2 CE2 doub Y N 388 TRP CD2 CE3 sing Y N 389 TRP NE1 CE2 sing Y N 390 TRP NE1 HE1 sing N N 391 TRP CE2 CZ2 sing Y N 392 TRP CE3 CZ3 doub Y N 393 TRP CE3 HE3 sing N N 394 TRP CZ2 CH2 doub Y N 395 TRP CZ2 HZ2 sing N N 396 TRP CZ3 CH2 sing Y N 397 TRP CZ3 HZ3 sing N N 398 TRP CH2 HH2 sing N N 399 TRP OXT HXT sing N N 400 TYR N CA sing N N 401 TYR N H sing N N 402 TYR N H2 sing N N 403 TYR CA C sing N N 404 TYR CA CB sing N N 405 TYR CA HA sing N N 406 TYR C O doub N N 407 TYR C OXT sing N N 408 TYR CB CG sing N N 409 TYR CB HB2 sing N N 410 TYR CB HB3 sing N N 411 TYR CG CD1 doub Y N 412 TYR CG CD2 sing Y N 413 TYR CD1 CE1 sing Y N 414 TYR CD1 HD1 sing N N 415 TYR CD2 CE2 doub Y N 416 TYR CD2 HD2 sing N N 417 TYR CE1 CZ doub Y N 418 TYR CE1 HE1 sing N N 419 TYR CE2 CZ sing Y N 420 TYR CE2 HE2 sing N N 421 TYR CZ OH sing N N 422 TYR OH HH sing N N 423 TYR OXT HXT sing N N 424 VAL N CA sing N N 425 VAL N H sing N N 426 VAL N H2 sing N N 427 VAL CA C sing N N 428 VAL CA CB sing N N 429 VAL CA HA sing N N 430 VAL C O doub N N 431 VAL C OXT sing N N 432 VAL CB CG1 sing N N 433 VAL CB CG2 sing N N 434 VAL CB HB sing N N 435 VAL CG1 HG11 sing N N 436 VAL CG1 HG12 sing N N 437 VAL CG1 HG13 sing N N 438 VAL CG2 HG21 sing N N 439 VAL CG2 HG22 sing N N 440 VAL CG2 HG23 sing N N 441 VAL OXT HXT sing N N 442 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'HEME C' HEC 3 'SODIUM ION' NA 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4EIF _pdbx_initial_refinement_model.details 'PDB ENTRY 4EIF' #