HEADER MEMBRANE PROTEIN/PROTEIN BINDING 08-MAY-13 4KML TITLE PROBING THE N-TERMINAL BETA-SHEET CONVERSION IN THE CRYSTAL STRUCTURE TITLE 2 OF THE FULL-LENGTH HUMAN PRION PROTEIN BOUND TO A NANOBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR PRION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PRP, ASCR, PRP27-30, PRP33-35C; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NANOBODY; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRIP, PRNP, PRP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28A; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 11 ORGANISM_COMMON: LLAMA; SOURCE 12 ORGANISM_TAXID: 9844; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PRION-LIKE FOLD, ANTIBODY, NANOBODY, MEMBRANE PROTEIN-PROTEIN BINDING KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.N.N.ABSKHARON,G.GIACHIN,A.WOHLKONIG,S.H.SOROR,E.PARDON,G.LEGNAME, AUTHOR 2 J.STEYAERT REVDAT 3 20-SEP-23 4KML 1 SEQADV REVDAT 2 24-JAN-18 4KML 1 AUTHOR REVDAT 1 19-FEB-14 4KML 0 JRNL AUTH R.N.ABSKHARON,G.GIACHIN,A.WOHLKONIG,S.H.SOROR,E.PARDON, JRNL AUTH 2 G.LEGNAME,J.STEYAERT JRNL TITL PROBING THE N-TERMINAL BETA-SHEET CONVERSION IN THE CRYSTAL JRNL TITL 2 STRUCTURE OF THE HUMAN PRION PROTEIN BOUND TO A NANOBODY. JRNL REF J.AM.CHEM.SOC. V. 136 937 2014 JRNL REFN ISSN 0002-7863 JRNL PMID 24400836 JRNL DOI 10.1021/JA407527P REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 40119 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2112 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2842 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1823 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 89 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.065 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.064 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.040 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.065 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1871 ; 0.027 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1697 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2525 ; 2.299 ; 1.930 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3884 ; 0.973 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 232 ; 6.207 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;32.603 ;23.368 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 310 ;12.172 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.905 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 260 ; 0.146 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2187 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 475 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4KML COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079526. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : THE OPTICAL ELEMENTS CONSIST OF REMARK 200 A VERTICALLY COLLIMATING MIRROR REMARK 200 (M1, FOCUS AT INFINITY), REMARK 200 FOLLOWED BY A BARTELS REMARK 200 MONOCHROMATOR WITH DUAL CHANNEL REMARK 200 CUT CRYSTALS (DCCM) IN (+--+) REMARK 200 GEOMETRY, AND A TOROIDAL MIRROR REMARK 200 (M2) TO VERTICALLY AND REMARK 200 HORIZONTALLY FOCUS THE BEAM AT REMARK 200 THE SAMPLE POSITION (WITH 2:1 REMARK 200 HORIZONTAL DEMAGNIFICATION). REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42289 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 44.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2W9E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 26.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: A9 OF THE MD-PROPLEX SCREEN - 0.2 M REMARK 280 SODIUM CHLORIDE, 0.1 M MES PH 6.0, 20% W/V PEG 2000 MME, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 65.72100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.96050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 65.72100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.96050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -9 REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 SER A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 SER A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 LEU A 4 REMARK 465 VAL A 5 REMARK 465 PRO A 6 REMARK 465 ARG A 7 REMARK 465 GLY A 8 REMARK 465 SER A 9 REMARK 465 HIS A 10 REMARK 465 MET A 11 REMARK 465 ALA A 12 REMARK 465 SER A 13 REMARK 465 MET A 14 REMARK 465 THR A 15 REMARK 465 GLY A 16 REMARK 465 GLY A 17 REMARK 465 GLN A 18 REMARK 465 GLN A 19 REMARK 465 MET A 20 REMARK 465 GLY A 21 REMARK 465 ARG A 22 REMARK 465 GLY A 23 REMARK 465 LYS A 24 REMARK 465 ARG A 25 REMARK 465 PRO A 26 REMARK 465 LYS A 27 REMARK 465 PRO A 28 REMARK 465 GLY A 29 REMARK 465 GLY A 30 REMARK 465 TRP A 31 REMARK 465 ASN A 32 REMARK 465 THR A 33 REMARK 465 GLY A 34 REMARK 465 GLY A 35 REMARK 465 SER A 36 REMARK 465 ARG A 37 REMARK 465 TYR A 38 REMARK 465 PRO A 39 REMARK 465 GLY A 40 REMARK 465 GLN A 41 REMARK 465 GLY A 42 REMARK 465 SER A 43 REMARK 465 PRO A 44 REMARK 465 GLY A 45 REMARK 465 GLY A 46 REMARK 465 ASN A 47 REMARK 465 ARG A 48 REMARK 465 TYR A 49 REMARK 465 PRO A 50 REMARK 465 PRO A 51 REMARK 465 GLN A 52 REMARK 465 GLY A 53 REMARK 465 GLY A 54 REMARK 465 GLY A 55 REMARK 465 GLY A 56 REMARK 465 TRP A 57 REMARK 465 GLY A 58 REMARK 465 GLN A 59 REMARK 465 PRO A 60 REMARK 465 HIS A 61 REMARK 465 GLY A 62 REMARK 465 GLY A 63 REMARK 465 GLY A 64 REMARK 465 TRP A 65 REMARK 465 GLY A 66 REMARK 465 GLN A 67 REMARK 465 PRO A 68 REMARK 465 HIS A 69 REMARK 465 GLY A 70 REMARK 465 GLY A 71 REMARK 465 GLY A 72 REMARK 465 TRP A 73 REMARK 465 GLY A 74 REMARK 465 GLN A 75 REMARK 465 PRO A 76 REMARK 465 HIS A 77 REMARK 465 GLY A 78 REMARK 465 GLY A 79 REMARK 465 GLY A 80 REMARK 465 TRP A 81 REMARK 465 GLY A 82 REMARK 465 GLN A 83 REMARK 465 PRO A 84 REMARK 465 HIS A 85 REMARK 465 GLY A 86 REMARK 465 GLY A 87 REMARK 465 GLY A 88 REMARK 465 TRP A 89 REMARK 465 GLY A 90 REMARK 465 GLN A 91 REMARK 465 GLY A 92 REMARK 465 GLY A 93 REMARK 465 GLY A 94 REMARK 465 THR A 95 REMARK 465 HIS A 96 REMARK 465 SER A 97 REMARK 465 GLN A 98 REMARK 465 TRP A 99 REMARK 465 ASN A 100 REMARK 465 LYS A 101 REMARK 465 PRO A 102 REMARK 465 SER A 103 REMARK 465 LYS A 104 REMARK 465 PRO A 105 REMARK 465 LYS A 106 REMARK 465 THR A 107 REMARK 465 ASN A 108 REMARK 465 MET A 109 REMARK 465 LYS A 110 REMARK 465 HIS A 111 REMARK 465 MET A 112 REMARK 465 ALA A 113 REMARK 465 GLY A 114 REMARK 465 ALA A 115 REMARK 465 ALA A 116 REMARK 465 TYR A 226 REMARK 465 GLN A 227 REMARK 465 ARG A 228 REMARK 465 GLY A 229 REMARK 465 SER A 230 REMARK 465 SER A 231 REMARK 465 SER B 124 REMARK 465 HIS B 125 REMARK 465 HIS B 126 REMARK 465 HIS B 127 REMARK 465 HIS B 128 REMARK 465 HIS B 129 REMARK 465 HIS B 130 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 168 CD GLU A 168 OE2 0.067 REMARK 500 TYR B 60 CE1 TYR B 60 CZ -0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 151 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 151 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG A 164 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP A 167 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP B 56 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 TYR B 60 CB - CG - CD1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 67 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 108 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP B 112 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 92 165.70 177.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4N9O RELATED DB: PDB DBREF 4KML A 24 231 UNP P04156 PRIO_HUMAN 24 231 DBREF 4KML B 1 130 PDB 4KML 4KML 1 130 SEQADV 4KML MET A -9 UNP P04156 EXPRESSION TAG SEQADV 4KML GLY A -8 UNP P04156 EXPRESSION TAG SEQADV 4KML SER A -7 UNP P04156 EXPRESSION TAG SEQADV 4KML SER A -6 UNP P04156 EXPRESSION TAG SEQADV 4KML HIS A -5 UNP P04156 EXPRESSION TAG SEQADV 4KML HIS A -4 UNP P04156 EXPRESSION TAG SEQADV 4KML HIS A -3 UNP P04156 EXPRESSION TAG SEQADV 4KML HIS A -2 UNP P04156 EXPRESSION TAG SEQADV 4KML HIS A -1 UNP P04156 EXPRESSION TAG SEQADV 4KML HIS A 0 UNP P04156 EXPRESSION TAG SEQADV 4KML SER A 1 UNP P04156 EXPRESSION TAG SEQADV 4KML SER A 2 UNP P04156 EXPRESSION TAG SEQADV 4KML GLY A 3 UNP P04156 EXPRESSION TAG SEQADV 4KML LEU A 4 UNP P04156 EXPRESSION TAG SEQADV 4KML VAL A 5 UNP P04156 EXPRESSION TAG SEQADV 4KML PRO A 6 UNP P04156 EXPRESSION TAG SEQADV 4KML ARG A 7 UNP P04156 EXPRESSION TAG SEQADV 4KML GLY A 8 UNP P04156 EXPRESSION TAG SEQADV 4KML SER A 9 UNP P04156 EXPRESSION TAG SEQADV 4KML HIS A 10 UNP P04156 EXPRESSION TAG SEQADV 4KML MET A 11 UNP P04156 EXPRESSION TAG SEQADV 4KML ALA A 12 UNP P04156 EXPRESSION TAG SEQADV 4KML SER A 13 UNP P04156 EXPRESSION TAG SEQADV 4KML MET A 14 UNP P04156 EXPRESSION TAG SEQADV 4KML THR A 15 UNP P04156 EXPRESSION TAG SEQADV 4KML GLY A 16 UNP P04156 EXPRESSION TAG SEQADV 4KML GLY A 17 UNP P04156 EXPRESSION TAG SEQADV 4KML GLN A 18 UNP P04156 EXPRESSION TAG SEQADV 4KML GLN A 19 UNP P04156 EXPRESSION TAG SEQADV 4KML MET A 20 UNP P04156 EXPRESSION TAG SEQADV 4KML GLY A 21 UNP P04156 EXPRESSION TAG SEQADV 4KML ARG A 22 UNP P04156 EXPRESSION TAG SEQADV 4KML GLY A 23 UNP P04156 EXPRESSION TAG SEQRES 1 A 241 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 241 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 241 GLY GLN GLN MET GLY ARG GLY LYS ARG PRO LYS PRO GLY SEQRES 4 A 241 GLY TRP ASN THR GLY GLY SER ARG TYR PRO GLY GLN GLY SEQRES 5 A 241 SER PRO GLY GLY ASN ARG TYR PRO PRO GLN GLY GLY GLY SEQRES 6 A 241 GLY TRP GLY GLN PRO HIS GLY GLY GLY TRP GLY GLN PRO SEQRES 7 A 241 HIS GLY GLY GLY TRP GLY GLN PRO HIS GLY GLY GLY TRP SEQRES 8 A 241 GLY GLN PRO HIS GLY GLY GLY TRP GLY GLN GLY GLY GLY SEQRES 9 A 241 THR HIS SER GLN TRP ASN LYS PRO SER LYS PRO LYS THR SEQRES 10 A 241 ASN MET LYS HIS MET ALA GLY ALA ALA ALA ALA GLY ALA SEQRES 11 A 241 VAL VAL GLY GLY LEU GLY GLY TYR MET LEU GLY SER ALA SEQRES 12 A 241 MET SER ARG PRO ILE ILE HIS PHE GLY SER ASP TYR GLU SEQRES 13 A 241 ASP ARG TYR TYR ARG GLU ASN MET HIS ARG TYR PRO ASN SEQRES 14 A 241 GLN VAL TYR TYR ARG PRO MET ASP GLU TYR SER ASN GLN SEQRES 15 A 241 ASN ASN PHE VAL HIS ASP CYS VAL ASN ILE THR ILE LYS SEQRES 16 A 241 GLN HIS THR VAL THR THR THR THR LYS GLY GLU ASN PHE SEQRES 17 A 241 THR GLU THR ASP VAL LYS MET MET GLU ARG VAL VAL GLU SEQRES 18 A 241 GLN MET CYS ILE THR GLN TYR GLU ARG GLU SER GLN ALA SEQRES 19 A 241 TYR TYR GLN ARG GLY SER SER SEQRES 1 B 130 ALA VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 130 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 130 ARG THR PHE SER SER TYR ASN MET GLY TRP PHE ARG GLN SEQRES 4 B 130 ALA PRO GLY LYS GLY ARG GLU PHE VAL ALA SER ILE THR SEQRES 5 B 130 SER SER GLY ASP LYS SER ASP TYR THR ASP SER VAL LYS SEQRES 6 B 130 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 B 130 MET TYR LEU GLN MET ASN ASN LEU LYS PRO GLU ASP THR SEQRES 8 B 130 ALA THR TYR TYR CYS ALA ARG GLY LEU GLY ILE TYR ILE SEQRES 9 B 130 ILE ARG ALA ARG GLY GLY TYR ASP HIS TRP GLY GLN GLY SEQRES 10 B 130 THR GLN VAL THR VAL SER SER HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *89(H2 O) HELIX 1 1 SER A 143 MET A 154 1 12 HELIX 2 2 HIS A 155 TYR A 157 5 3 HELIX 3 3 PRO A 165 TYR A 169 5 5 HELIX 4 4 ASN A 171 LYS A 194 1 24 HELIX 5 5 THR A 199 TYR A 225 1 27 HELIX 6 6 THR B 28 TYR B 32 5 5 HELIX 7 7 ASP B 62 LYS B 65 5 4 HELIX 8 8 LYS B 87 THR B 91 5 5 HELIX 9 9 ALA B 107 GLY B 109 5 3 SHEET 1 A 3 ALA A 118 VAL A 122 0 SHEET 2 A 3 LEU A 125 LEU A 130 -1 O LEU A 125 N VAL A 122 SHEET 3 A 3 TYR A 162 TYR A 163 -1 O TYR A 163 N MET A 129 SHEET 1 B 4 LEU B 4 SER B 7 0 SHEET 2 B 4 LEU B 18 ALA B 24 -1 O SER B 21 N SER B 7 SHEET 3 B 4 THR B 78 MET B 83 -1 O MET B 83 N LEU B 18 SHEET 4 B 4 PHE B 68 ASP B 73 -1 N ASP B 73 O THR B 78 SHEET 1 C 6 GLY B 10 VAL B 12 0 SHEET 2 C 6 THR B 118 VAL B 122 1 O THR B 121 N VAL B 12 SHEET 3 C 6 ALA B 92 GLY B 99 -1 N TYR B 94 O THR B 118 SHEET 4 C 6 MET B 34 GLN B 39 -1 N GLN B 39 O THR B 93 SHEET 5 C 6 GLU B 46 ILE B 51 -1 O ALA B 49 N TRP B 36 SHEET 6 C 6 SER B 58 TYR B 60 -1 O ASP B 59 N SER B 50 SHEET 1 D 4 GLY B 10 VAL B 12 0 SHEET 2 D 4 THR B 118 VAL B 122 1 O THR B 121 N VAL B 12 SHEET 3 D 4 ALA B 92 GLY B 99 -1 N TYR B 94 O THR B 118 SHEET 4 D 4 TYR B 111 ASP B 112 -1 O ASP B 112 N ARG B 98 SSBOND 1 CYS A 179 CYS A 214 1555 1555 2.05 SSBOND 2 CYS B 22 CYS B 96 1555 1555 2.32 CRYST1 131.442 45.921 44.964 90.00 96.09 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007608 0.000000 0.000812 0.00000 SCALE2 0.000000 0.021777 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022366 0.00000