data_4KND # _entry.id 4KND # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4KND RCSB RCSB079554 WWPDB D_1000079554 # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id MCSG-APC102425 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 4KND _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-05-09 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Osipiuk, J.' 1 'Hatzos-Skintges, C.' 2 'Clancy, S.' 3 'Adkins, J.' 4 'Joachimiak, A.' 5 'Midwest Center for Structural Genomics (MCSG)' 6 'Program for the Characterization of Secreted Effector Proteins (PCSEP)' 7 # _citation.id primary _citation.title 'Thioredoxin from Anaeromyxobacter dehalogenans.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Osipiuk, J.' 1 primary 'Hatzos-skintges, C.' 2 primary 'Clancy, S.' 3 primary 'Adkins, J.' 4 primary 'Joachimiak, A.' 5 # _cell.length_a 64.731 _cell.length_b 76.954 _cell.length_c 77.208 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4KND _cell.pdbx_unique_axis ? _cell.Z_PDB 16 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'I 21 21 21' _symmetry.entry_id 4KND _symmetry.Int_Tables_number 24 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Thioredoxin 12266.804 2 ? ? ? ? 2 water nat water 18.015 47 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)ASNDVVVLQDSTFEQEVLKSDTPVLVDFWAVWCGPCKAIAPVVDDLAARYKGKLKVAK(MSE)DVDQHQGVP QQYGIRSIPTLLVFKGGRVVDTVIGADKTRLEDSVKKAIG ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMASNDVVVLQDSTFEQEVLKSDTPVLVDFWAVWCGPCKAIAPVVDDLAARYKGKLKVAKMDVDQHQGVPQQYGIRSI PTLLVFKGGRVVDTVIGADKTRLEDSVKKAIG ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier MCSG-APC102425 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 ALA n 1 6 SER n 1 7 ASN n 1 8 ASP n 1 9 VAL n 1 10 VAL n 1 11 VAL n 1 12 LEU n 1 13 GLN n 1 14 ASP n 1 15 SER n 1 16 THR n 1 17 PHE n 1 18 GLU n 1 19 GLN n 1 20 GLU n 1 21 VAL n 1 22 LEU n 1 23 LYS n 1 24 SER n 1 25 ASP n 1 26 THR n 1 27 PRO n 1 28 VAL n 1 29 LEU n 1 30 VAL n 1 31 ASP n 1 32 PHE n 1 33 TRP n 1 34 ALA n 1 35 VAL n 1 36 TRP n 1 37 CYS n 1 38 GLY n 1 39 PRO n 1 40 CYS n 1 41 LYS n 1 42 ALA n 1 43 ILE n 1 44 ALA n 1 45 PRO n 1 46 VAL n 1 47 VAL n 1 48 ASP n 1 49 ASP n 1 50 LEU n 1 51 ALA n 1 52 ALA n 1 53 ARG n 1 54 TYR n 1 55 LYS n 1 56 GLY n 1 57 LYS n 1 58 LEU n 1 59 LYS n 1 60 VAL n 1 61 ALA n 1 62 LYS n 1 63 MSE n 1 64 ASP n 1 65 VAL n 1 66 ASP n 1 67 GLN n 1 68 HIS n 1 69 GLN n 1 70 GLY n 1 71 VAL n 1 72 PRO n 1 73 GLN n 1 74 GLN n 1 75 TYR n 1 76 GLY n 1 77 ILE n 1 78 ARG n 1 79 SER n 1 80 ILE n 1 81 PRO n 1 82 THR n 1 83 LEU n 1 84 LEU n 1 85 VAL n 1 86 PHE n 1 87 LYS n 1 88 GLY n 1 89 GLY n 1 90 ARG n 1 91 VAL n 1 92 VAL n 1 93 ASP n 1 94 THR n 1 95 VAL n 1 96 ILE n 1 97 GLY n 1 98 ALA n 1 99 ASP n 1 100 LYS n 1 101 THR n 1 102 ARG n 1 103 LEU n 1 104 GLU n 1 105 ASP n 1 106 SER n 1 107 VAL n 1 108 LYS n 1 109 LYS n 1 110 ALA n 1 111 ILE n 1 112 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Adeh_2496 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 2CP-C _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Anaeromyxobacter dehalogenans' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 290397 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG57 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q2IKT5_ANADE _struct_ref.pdbx_db_accession Q2IKT5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MASNDVVVLQDSTFEQEVLKSDTPVLVDFWAVWCGPCKAIAPVVDDLAARYKGKLKVAKMDVDQHQGVPQQYGIRSIPTL LVFKGGRVVDTVIGADKTRLEDSVKKAIG ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4KND A 4 ? 112 ? Q2IKT5 1 ? 109 ? 1 109 2 1 4KND B 4 ? 112 ? Q2IKT5 1 ? 109 ? 1 109 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4KND SER A 1 ? UNP Q2IKT5 ? ? 'EXPRESSION TAG' -2 1 1 4KND ASN A 2 ? UNP Q2IKT5 ? ? 'EXPRESSION TAG' -1 2 1 4KND ALA A 3 ? UNP Q2IKT5 ? ? 'EXPRESSION TAG' 0 3 2 4KND SER B 1 ? UNP Q2IKT5 ? ? 'EXPRESSION TAG' -2 4 2 4KND ASN B 2 ? UNP Q2IKT5 ? ? 'EXPRESSION TAG' -1 5 2 4KND ALA B 3 ? UNP Q2IKT5 ? ? 'EXPRESSION TAG' 0 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4KND _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.96 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 37.23 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 289 _exptl_crystal_grow.pdbx_details '0.2 M sodium chloride, 0.1 M Tris-Cl buffer, 25% PEG-3350, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.details ? _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2013-04-05 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'double crystal monochromator' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID # _reflns.pdbx_chi_squared 3.430 _reflns.pdbx_scaling_rejects ? _reflns.limit_k_max ? _reflns.d_resolution_high 1.900 _reflns.observed_criterion_F_min ? _reflns.pdbx_netI_over_sigmaI 11.700 _reflns.observed_criterion_F_max ? _reflns.pdbx_Rmerge_I_obs 0.086 _reflns.limit_l_max ? _reflns.limit_k_min ? _reflns.entry_id 4KND _reflns.B_iso_Wilson_estimate 52.3 _reflns.percent_possible_obs 98.400 _reflns.pdbx_Rsym_value ? _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.limit_l_min ? _reflns.limit_h_min ? _reflns.R_free_details ? _reflns.number_all 15171 _reflns.d_resolution_low 38.51 _reflns.pdbx_redundancy 7.100 _reflns.number_obs 15171 _reflns.limit_h_max ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.900 1.930 ? ? ? 0.631 2.03 ? 0.653 6.100 ? 723 96.700 1 1 1.930 1.970 ? ? ? 0.532 ? ? 0.706 7.000 ? 763 98.500 2 1 1.970 2.010 ? ? ? 0.433 ? ? 0.872 7.200 ? 732 98.800 3 1 2.010 2.050 ? ? ? 0.384 ? ? 0.921 7.400 ? 754 98.000 4 1 2.050 2.090 ? ? ? 0.335 ? ? 1.000 7.300 ? 740 98.000 5 1 2.090 2.140 ? ? ? 0.285 ? ? 1.235 7.400 ? 742 98.000 6 1 2.140 2.190 ? ? ? 0.235 ? ? 1.250 7.400 ? 742 98.900 7 1 2.190 2.250 ? ? ? 0.211 ? ? 1.579 7.400 ? 763 98.800 8 1 2.250 2.320 ? ? ? 0.192 ? ? 1.898 7.300 ? 744 98.300 9 1 2.320 2.390 ? ? ? 0.174 ? ? 2.168 7.300 ? 755 98.700 10 1 2.390 2.480 ? ? ? 0.158 ? ? 2.531 7.300 ? 747 98.700 11 1 2.480 2.580 ? ? ? 0.150 ? ? 2.678 7.300 ? 764 98.600 12 1 2.580 2.700 ? ? ? 0.133 ? ? 3.390 7.200 ? 756 99.200 13 1 2.700 2.840 ? ? ? 0.122 ? ? 4.204 7.100 ? 766 99.000 14 1 2.840 3.020 ? ? ? 0.105 ? ? 4.557 7.100 ? 769 98.800 15 1 3.020 3.250 ? ? ? 0.096 ? ? 5.834 7.000 ? 760 99.000 16 1 3.250 3.580 ? ? ? 0.084 ? ? 6.655 6.800 ? 771 99.400 17 1 3.580 4.090 ? ? ? 0.074 ? ? 7.262 6.700 ? 775 99.400 18 1 4.090 5.160 ? ? ? 0.069 ? ? 7.526 6.700 ? 791 99.000 19 1 5.160 50.000 ? ? ? 0.080 ? ? 12.425 6.300 ? 814 95.400 20 1 # _refine.ls_percent_reflns_R_free 5.0000 _refine.overall_SU_B 10.6320 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_R_Free_selection_details RANDOM _refine.overall_FOM_free_R_set ? _refine.pdbx_data_cutoff_low_absF ? _refine.entry_id 4KND _refine.aniso_B[2][3] -0.0000 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_ML 0.1380 _refine.pdbx_ls_sigma_I 0 _refine.aniso_B[1][3] -0.0000 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.aniso_B[3][3] -4.1400 _refine.occupancy_max 1.000 _refine.ls_number_restraints ? _refine.aniso_B[1][1] -0.4100 _refine.pdbx_overall_ESU_R 0.1680 _refine.ls_R_factor_obs 0.1846 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_starting_model ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_method_to_determine_struct SAD _refine.solvent_model_param_ksol ? _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.correlation_coeff_Fo_to_Fc 0.9740 _refine.ls_number_reflns_R_free 754 _refine.correlation_coeff_Fo_to_Fc_free 0.9640 _refine.pdbx_ls_sigma_F 0.000 _refine.ls_percent_reflns_obs 98.1100 _refine.ls_R_factor_R_work 0.1828 _refine.overall_SU_R_free ? _refine.ls_d_res_high 1.9000 _refine.pdbx_overall_ESU_R_Free 0.1450 _refine.B_iso_min 18.880 _refine.occupancy_min 0.400 _refine.B_iso_mean 52.864 _refine.pdbx_stereochem_target_val_spec_case ? _refine.ls_R_factor_all 0.1846 _refine.aniso_B[2][2] 4.5500 _refine.B_iso_max 79.710 _refine.ls_d_res_low 38.5100 _refine.pdbx_overall_phase_error ? _refine.solvent_model_details MASK _refine.aniso_B[1][2] -0.0000 _refine.ls_R_factor_R_free 0.2169 _refine.ls_R_factor_R_free_error ? _refine.ls_number_reflns_obs 15170 _refine.overall_FOM_work_R_set ? _refine.ls_number_parameters ? _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : RESIDUAL ONLY' _refine.ls_number_reflns_all 15170 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.solvent_model_param_bsol ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1611 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 47 _refine_hist.number_atoms_total 1658 _refine_hist.d_res_high 1.9000 _refine_hist.d_res_low 38.5100 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1686 0.017 0.019 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1696 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2301 1.767 1.975 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 3906 0.827 3.002 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 219 6.246 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 68 30.193 24.706 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 297 15.540 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 10 20.387 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 273 0.093 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1884 0.008 0.021 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 346 0.001 0.020 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.9040 _refine_ls_shell.d_res_low 1.9530 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 93.0300 _refine_ls_shell.number_reflns_R_work 972 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3070 _refine_ls_shell.R_factor_R_free 0.2870 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 56 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1028 _refine_ls_shell.number_reflns_obs 1028 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4KND _struct.title 'Thioredoxin from Anaeromyxobacter dehalogenans.' _struct.pdbx_descriptor Thioredoxin _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text ;structural genomics, TRX_family, PSI-Biology, Midwest Center for Structural Genomics, MCSG, OXIDOREDUCTASE, Program for the Characterization of Secreted Effector Proteins, PCSEP ; _struct_keywords.entry_id 4KND # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details 'chain A (or chain B)' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 13 ? SER A 15 ? GLN A 10 SER A 12 5 ? 3 HELX_P HELX_P2 2 THR A 16 ? VAL A 21 ? THR A 13 VAL A 18 1 ? 6 HELX_P HELX_P3 3 CYS A 37 ? TYR A 54 ? CYS A 34 TYR A 51 1 ? 18 HELX_P HELX_P4 4 GLN A 69 ? TYR A 75 ? GLN A 66 TYR A 72 1 ? 7 HELX_P HELX_P5 5 ASP A 99 ? GLY A 112 ? ASP A 96 GLY A 109 1 ? 14 HELX_P HELX_P6 6 GLN B 13 ? VAL B 21 ? GLN B 10 VAL B 18 1 ? 9 HELX_P HELX_P7 7 CYS B 37 ? LYS B 55 ? CYS B 34 LYS B 52 1 ? 19 HELX_P HELX_P8 8 GLY B 56 ? LEU B 58 ? GLY B 53 LEU B 55 5 ? 3 HELX_P HELX_P9 9 GLN B 69 ? TYR B 75 ? GLN B 66 TYR B 72 1 ? 7 HELX_P HELX_P10 10 ASP B 99 ? ILE B 111 ? ASP B 96 ILE B 108 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 37 SG ? ? ? 1_555 A CYS 40 SG ? ? A CYS 34 A CYS 37 1_555 ? ? ? ? ? ? ? 2.153 ? disulf2 disulf ? ? B CYS 37 SG ? ? ? 1_555 B CYS 40 SG ? ? B CYS 34 B CYS 37 1_555 ? ? ? ? ? ? ? 2.143 ? covale1 covale ? ? A LYS 62 C ? ? ? 1_555 A MSE 63 N ? ? A LYS 59 A MSE 60 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale ? ? A MSE 63 C ? ? ? 1_555 A ASP 64 N ? ? A MSE 60 A ASP 61 1_555 ? ? ? ? ? ? ? 1.344 ? covale3 covale ? ? B LYS 62 C ? ? ? 1_555 B MSE 63 N ? ? B LYS 59 B MSE 60 1_555 ? ? ? ? ? ? ? 1.351 ? covale4 covale ? ? B MSE 63 C ? ? ? 1_555 B ASP 64 N ? ? B MSE 60 B ASP 61 1_555 ? ? ? ? ? ? ? 1.331 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ILE 80 A . ? ILE 77 A PRO 81 A ? PRO 78 A 1 3.42 2 ILE 80 B . ? ILE 77 B PRO 81 B ? PRO 78 B 1 5.26 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 9 ? VAL A 11 ? VAL A 6 VAL A 8 A 2 LYS A 59 ? ASP A 64 ? LYS A 56 ASP A 61 A 3 VAL A 28 ? TRP A 33 ? VAL A 25 TRP A 30 A 4 THR A 82 ? LYS A 87 ? THR A 79 LYS A 84 A 5 ARG A 90 ? ILE A 96 ? ARG A 87 ILE A 93 B 1 VAL B 9 ? VAL B 11 ? VAL B 6 VAL B 8 B 2 LYS B 59 ? ASP B 64 ? LYS B 56 ASP B 61 B 3 VAL B 28 ? TRP B 33 ? VAL B 25 TRP B 30 B 4 THR B 82 ? LYS B 87 ? THR B 79 LYS B 84 B 5 ARG B 90 ? ILE B 96 ? ARG B 87 ILE B 93 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 10 ? N VAL A 7 O VAL A 60 ? O VAL A 57 A 2 3 O ALA A 61 ? O ALA A 58 N LEU A 29 ? N LEU A 26 A 3 4 N VAL A 28 ? N VAL A 25 O PHE A 86 ? O PHE A 83 A 4 5 N LEU A 83 ? N LEU A 80 O VAL A 95 ? O VAL A 92 B 1 2 N VAL B 10 ? N VAL B 7 O LYS B 62 ? O LYS B 59 B 2 3 O ALA B 61 ? O ALA B 58 N LEU B 29 ? N LEU B 26 B 3 4 N VAL B 28 ? N VAL B 25 O PHE B 86 ? O PHE B 83 B 4 5 N LEU B 83 ? N LEU B 80 O VAL B 95 ? O VAL B 92 # _atom_sites.entry_id 4KND _atom_sites.fract_transf_matrix[1][1] 0.015449 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012995 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012952 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 ? ? ? A . n A 1 4 MSE 4 1 ? ? ? A . n A 1 5 ALA 5 2 ? ? ? A . n A 1 6 SER 6 3 ? ? ? A . n A 1 7 ASN 7 4 ? ? ? A . n A 1 8 ASP 8 5 5 ASP ASP A . n A 1 9 VAL 9 6 6 VAL VAL A . n A 1 10 VAL 10 7 7 VAL VAL A . n A 1 11 VAL 11 8 8 VAL VAL A . n A 1 12 LEU 12 9 9 LEU LEU A . n A 1 13 GLN 13 10 10 GLN GLN A . n A 1 14 ASP 14 11 11 ASP ASP A . n A 1 15 SER 15 12 12 SER SER A . n A 1 16 THR 16 13 13 THR THR A . n A 1 17 PHE 17 14 14 PHE PHE A . n A 1 18 GLU 18 15 15 GLU GLU A . n A 1 19 GLN 19 16 16 GLN GLN A . n A 1 20 GLU 20 17 17 GLU GLU A . n A 1 21 VAL 21 18 18 VAL VAL A . n A 1 22 LEU 22 19 19 LEU LEU A . n A 1 23 LYS 23 20 20 LYS LYS A . n A 1 24 SER 24 21 21 SER SER A . n A 1 25 ASP 25 22 22 ASP ASP A . n A 1 26 THR 26 23 23 THR THR A . n A 1 27 PRO 27 24 24 PRO PRO A . n A 1 28 VAL 28 25 25 VAL VAL A . n A 1 29 LEU 29 26 26 LEU LEU A . n A 1 30 VAL 30 27 27 VAL VAL A . n A 1 31 ASP 31 28 28 ASP ASP A . n A 1 32 PHE 32 29 29 PHE PHE A . n A 1 33 TRP 33 30 30 TRP TRP A . n A 1 34 ALA 34 31 31 ALA ALA A . n A 1 35 VAL 35 32 32 VAL VAL A . n A 1 36 TRP 36 33 33 TRP TRP A . n A 1 37 CYS 37 34 34 CYS CYS A . n A 1 38 GLY 38 35 35 GLY GLY A . n A 1 39 PRO 39 36 36 PRO PRO A . n A 1 40 CYS 40 37 37 CYS CYS A . n A 1 41 LYS 41 38 38 LYS LYS A . n A 1 42 ALA 42 39 39 ALA ALA A . n A 1 43 ILE 43 40 40 ILE ILE A . n A 1 44 ALA 44 41 41 ALA ALA A . n A 1 45 PRO 45 42 42 PRO PRO A . n A 1 46 VAL 46 43 43 VAL VAL A . n A 1 47 VAL 47 44 44 VAL VAL A . n A 1 48 ASP 48 45 45 ASP ASP A . n A 1 49 ASP 49 46 46 ASP ASP A . n A 1 50 LEU 50 47 47 LEU LEU A . n A 1 51 ALA 51 48 48 ALA ALA A . n A 1 52 ALA 52 49 49 ALA ALA A . n A 1 53 ARG 53 50 50 ARG ARG A . n A 1 54 TYR 54 51 51 TYR TYR A . n A 1 55 LYS 55 52 52 LYS LYS A . n A 1 56 GLY 56 53 53 GLY GLY A . n A 1 57 LYS 57 54 54 LYS LYS A . n A 1 58 LEU 58 55 55 LEU LEU A . n A 1 59 LYS 59 56 56 LYS LYS A . n A 1 60 VAL 60 57 57 VAL VAL A . n A 1 61 ALA 61 58 58 ALA ALA A . n A 1 62 LYS 62 59 59 LYS LYS A . n A 1 63 MSE 63 60 60 MSE MSE A . n A 1 64 ASP 64 61 61 ASP ASP A . n A 1 65 VAL 65 62 62 VAL VAL A . n A 1 66 ASP 66 63 63 ASP ASP A . n A 1 67 GLN 67 64 64 GLN GLN A . n A 1 68 HIS 68 65 65 HIS HIS A . n A 1 69 GLN 69 66 66 GLN GLN A . n A 1 70 GLY 70 67 67 GLY GLY A . n A 1 71 VAL 71 68 68 VAL VAL A . n A 1 72 PRO 72 69 69 PRO PRO A . n A 1 73 GLN 73 70 70 GLN GLN A . n A 1 74 GLN 74 71 71 GLN GLN A . n A 1 75 TYR 75 72 72 TYR TYR A . n A 1 76 GLY 76 73 73 GLY GLY A . n A 1 77 ILE 77 74 74 ILE ILE A . n A 1 78 ARG 78 75 75 ARG ARG A . n A 1 79 SER 79 76 76 SER SER A . n A 1 80 ILE 80 77 77 ILE ILE A . n A 1 81 PRO 81 78 78 PRO PRO A . n A 1 82 THR 82 79 79 THR THR A . n A 1 83 LEU 83 80 80 LEU LEU A . n A 1 84 LEU 84 81 81 LEU LEU A . n A 1 85 VAL 85 82 82 VAL VAL A . n A 1 86 PHE 86 83 83 PHE PHE A . n A 1 87 LYS 87 84 84 LYS LYS A . n A 1 88 GLY 88 85 85 GLY GLY A . n A 1 89 GLY 89 86 86 GLY GLY A . n A 1 90 ARG 90 87 87 ARG ARG A . n A 1 91 VAL 91 88 88 VAL VAL A . n A 1 92 VAL 92 89 89 VAL VAL A . n A 1 93 ASP 93 90 90 ASP ASP A . n A 1 94 THR 94 91 91 THR THR A . n A 1 95 VAL 95 92 92 VAL VAL A . n A 1 96 ILE 96 93 93 ILE ILE A . n A 1 97 GLY 97 94 94 GLY GLY A . n A 1 98 ALA 98 95 95 ALA ALA A . n A 1 99 ASP 99 96 96 ASP ASP A . n A 1 100 LYS 100 97 97 LYS LYS A . n A 1 101 THR 101 98 98 THR THR A . n A 1 102 ARG 102 99 99 ARG ARG A . n A 1 103 LEU 103 100 100 LEU LEU A . n A 1 104 GLU 104 101 101 GLU GLU A . n A 1 105 ASP 105 102 102 ASP ASP A . n A 1 106 SER 106 103 103 SER SER A . n A 1 107 VAL 107 104 104 VAL VAL A . n A 1 108 LYS 108 105 105 LYS LYS A . n A 1 109 LYS 109 106 106 LYS LYS A . n A 1 110 ALA 110 107 107 ALA ALA A . n A 1 111 ILE 111 108 108 ILE ILE A . n A 1 112 GLY 112 109 109 GLY GLY A . n B 1 1 SER 1 -2 ? ? ? B . n B 1 2 ASN 2 -1 ? ? ? B . n B 1 3 ALA 3 0 ? ? ? B . n B 1 4 MSE 4 1 ? ? ? B . n B 1 5 ALA 5 2 ? ? ? B . n B 1 6 SER 6 3 ? ? ? B . n B 1 7 ASN 7 4 ? ? ? B . n B 1 8 ASP 8 5 5 ASP ASP B . n B 1 9 VAL 9 6 6 VAL VAL B . n B 1 10 VAL 10 7 7 VAL VAL B . n B 1 11 VAL 11 8 8 VAL VAL B . n B 1 12 LEU 12 9 9 LEU LEU B . n B 1 13 GLN 13 10 10 GLN GLN B . n B 1 14 ASP 14 11 11 ASP ASP B . n B 1 15 SER 15 12 12 SER SER B . n B 1 16 THR 16 13 13 THR THR B . n B 1 17 PHE 17 14 14 PHE PHE B . n B 1 18 GLU 18 15 15 GLU GLU B . n B 1 19 GLN 19 16 16 GLN GLN B . n B 1 20 GLU 20 17 17 GLU GLU B . n B 1 21 VAL 21 18 18 VAL VAL B . n B 1 22 LEU 22 19 19 LEU LEU B . n B 1 23 LYS 23 20 20 LYS LYS B . n B 1 24 SER 24 21 21 SER SER B . n B 1 25 ASP 25 22 22 ASP ASP B . n B 1 26 THR 26 23 23 THR THR B . n B 1 27 PRO 27 24 24 PRO PRO B . n B 1 28 VAL 28 25 25 VAL VAL B . n B 1 29 LEU 29 26 26 LEU LEU B . n B 1 30 VAL 30 27 27 VAL VAL B . n B 1 31 ASP 31 28 28 ASP ASP B . n B 1 32 PHE 32 29 29 PHE PHE B . n B 1 33 TRP 33 30 30 TRP TRP B . n B 1 34 ALA 34 31 31 ALA ALA B . n B 1 35 VAL 35 32 32 VAL VAL B . n B 1 36 TRP 36 33 33 TRP TRP B . n B 1 37 CYS 37 34 34 CYS CYS B . n B 1 38 GLY 38 35 35 GLY GLY B . n B 1 39 PRO 39 36 36 PRO PRO B . n B 1 40 CYS 40 37 37 CYS CYS B . n B 1 41 LYS 41 38 38 LYS LYS B . n B 1 42 ALA 42 39 39 ALA ALA B . n B 1 43 ILE 43 40 40 ILE ILE B . n B 1 44 ALA 44 41 41 ALA ALA B . n B 1 45 PRO 45 42 42 PRO PRO B . n B 1 46 VAL 46 43 43 VAL VAL B . n B 1 47 VAL 47 44 44 VAL VAL B . n B 1 48 ASP 48 45 45 ASP ASP B . n B 1 49 ASP 49 46 46 ASP ASP B . n B 1 50 LEU 50 47 47 LEU LEU B . n B 1 51 ALA 51 48 48 ALA ALA B . n B 1 52 ALA 52 49 49 ALA ALA B . n B 1 53 ARG 53 50 50 ARG ARG B . n B 1 54 TYR 54 51 51 TYR TYR B . n B 1 55 LYS 55 52 52 LYS LYS B . n B 1 56 GLY 56 53 53 GLY GLY B . n B 1 57 LYS 57 54 54 LYS LYS B . n B 1 58 LEU 58 55 55 LEU LEU B . n B 1 59 LYS 59 56 56 LYS LYS B . n B 1 60 VAL 60 57 57 VAL VAL B . n B 1 61 ALA 61 58 58 ALA ALA B . n B 1 62 LYS 62 59 59 LYS LYS B . n B 1 63 MSE 63 60 60 MSE MSE B . n B 1 64 ASP 64 61 61 ASP ASP B . n B 1 65 VAL 65 62 62 VAL VAL B . n B 1 66 ASP 66 63 63 ASP ASP B . n B 1 67 GLN 67 64 64 GLN GLN B . n B 1 68 HIS 68 65 65 HIS HIS B . n B 1 69 GLN 69 66 66 GLN GLN B . n B 1 70 GLY 70 67 67 GLY GLY B . n B 1 71 VAL 71 68 68 VAL VAL B . n B 1 72 PRO 72 69 69 PRO PRO B . n B 1 73 GLN 73 70 70 GLN GLN B . n B 1 74 GLN 74 71 71 GLN GLN B . n B 1 75 TYR 75 72 72 TYR TYR B . n B 1 76 GLY 76 73 73 GLY GLY B . n B 1 77 ILE 77 74 74 ILE ILE B . n B 1 78 ARG 78 75 75 ARG ARG B . n B 1 79 SER 79 76 76 SER SER B . n B 1 80 ILE 80 77 77 ILE ILE B . n B 1 81 PRO 81 78 78 PRO PRO B . n B 1 82 THR 82 79 79 THR THR B . n B 1 83 LEU 83 80 80 LEU LEU B . n B 1 84 LEU 84 81 81 LEU LEU B . n B 1 85 VAL 85 82 82 VAL VAL B . n B 1 86 PHE 86 83 83 PHE PHE B . n B 1 87 LYS 87 84 84 LYS LYS B . n B 1 88 GLY 88 85 85 GLY GLY B . n B 1 89 GLY 89 86 86 GLY GLY B . n B 1 90 ARG 90 87 87 ARG ARG B . n B 1 91 VAL 91 88 88 VAL VAL B . n B 1 92 VAL 92 89 89 VAL VAL B . n B 1 93 ASP 93 90 90 ASP ASP B . n B 1 94 THR 94 91 91 THR THR B . n B 1 95 VAL 95 92 92 VAL VAL B . n B 1 96 ILE 96 93 93 ILE ILE B . n B 1 97 GLY 97 94 94 GLY GLY B . n B 1 98 ALA 98 95 95 ALA ALA B . n B 1 99 ASP 99 96 96 ASP ASP B . n B 1 100 LYS 100 97 97 LYS LYS B . n B 1 101 THR 101 98 98 THR THR B . n B 1 102 ARG 102 99 99 ARG ARG B . n B 1 103 LEU 103 100 100 LEU LEU B . n B 1 104 GLU 104 101 101 GLU GLU B . n B 1 105 ASP 105 102 102 ASP ASP B . n B 1 106 SER 106 103 103 SER SER B . n B 1 107 VAL 107 104 104 VAL VAL B . n B 1 108 LYS 108 105 105 LYS LYS B . n B 1 109 LYS 109 106 106 LYS LYS B . n B 1 110 ALA 110 107 107 ALA ALA B . n B 1 111 ILE 111 108 108 ILE ILE B . n B 1 112 GLY 112 109 ? ? ? B . n # loop_ _pdbx_SG_project.project_name _pdbx_SG_project.full_name_of_center _pdbx_SG_project.initial_of_center _pdbx_SG_project.id PSI:Biology 'Midwest Center for Structural Genomics' MCSG 1 PSI:Biology 'Program for the Characterization of Secreted Effector Proteins' PCSEP 2 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 201 2 HOH HOH A . C 2 HOH 2 202 3 HOH HOH A . C 2 HOH 3 203 6 HOH HOH A . C 2 HOH 4 204 7 HOH HOH A . C 2 HOH 5 205 8 HOH HOH A . C 2 HOH 6 206 9 HOH HOH A . C 2 HOH 7 207 10 HOH HOH A . C 2 HOH 8 208 11 HOH HOH A . C 2 HOH 9 209 13 HOH HOH A . C 2 HOH 10 210 14 HOH HOH A . C 2 HOH 11 211 15 HOH HOH A . C 2 HOH 12 212 16 HOH HOH A . C 2 HOH 13 213 18 HOH HOH A . C 2 HOH 14 214 20 HOH HOH A . C 2 HOH 15 215 23 HOH HOH A . C 2 HOH 16 216 24 HOH HOH A . C 2 HOH 17 217 25 HOH HOH A . C 2 HOH 18 218 30 HOH HOH A . C 2 HOH 19 219 31 HOH HOH A . C 2 HOH 20 220 32 HOH HOH A . C 2 HOH 21 221 34 HOH HOH A . C 2 HOH 22 222 36 HOH HOH A . C 2 HOH 23 223 39 HOH HOH A . C 2 HOH 24 224 42 HOH HOH A . C 2 HOH 25 225 43 HOH HOH A . C 2 HOH 26 226 44 HOH HOH A . C 2 HOH 27 227 45 HOH HOH A . D 2 HOH 1 201 1 HOH HOH B . D 2 HOH 2 202 5 HOH HOH B . D 2 HOH 3 203 12 HOH HOH B . D 2 HOH 4 204 17 HOH HOH B . D 2 HOH 5 205 19 HOH HOH B . D 2 HOH 6 206 21 HOH HOH B . D 2 HOH 7 207 22 HOH HOH B . D 2 HOH 8 208 26 HOH HOH B . D 2 HOH 9 209 27 HOH HOH B . D 2 HOH 10 210 28 HOH HOH B . D 2 HOH 11 211 29 HOH HOH B . D 2 HOH 12 212 33 HOH HOH B . D 2 HOH 13 213 35 HOH HOH B . D 2 HOH 14 214 37 HOH HOH B . D 2 HOH 15 215 38 HOH HOH B . D 2 HOH 16 216 40 HOH HOH B . D 2 HOH 17 217 41 HOH HOH B . D 2 HOH 18 218 46 HOH HOH B . D 2 HOH 19 219 47 HOH HOH B . D 2 HOH 20 220 48 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 63 A MSE 60 ? MET SELENOMETHIONINE 2 B MSE 63 B MSE 60 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C 2 1 B,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-05-22 2 'Structure model' 1 1 2014-05-07 3 'Structure model' 1 2 2017-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -0.1493 41.0279 33.8287 0.1668 0.0646 0.2295 0.0086 0.0175 0.0022 0.9947 1.0062 3.7359 -0.3443 0.5774 -0.0893 -0.1149 -0.0124 0.1273 -0.1535 0.0156 0.0735 -0.0079 -0.0686 0.2475 'X-RAY DIFFRACTION' 2 ? refined 18.5804 22.5037 23.9312 0.3147 0.0151 0.2544 0.0222 0.0511 -0.0151 1.5224 0.0971 4.4643 0.3394 0.2669 0.1033 0.1619 0.0205 -0.1824 0.0815 -0.0654 -0.0653 -0.0327 -0.0116 0.2216 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 5 A 109 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B 5 B 108 ? . . . . ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 REFMAC 5.7.0029 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 SBC-Collect . ? ? ? ? 'data collection' ? ? ? 6 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 7 HKL-3000 . ? ? ? ? 'data scaling' ? ? ? 8 SHELXCD . ? ? ? ? phasing ? ? ? 9 SHELXD . ? ? ? ? phasing ? ? ? 10 MLPHARE . ? ? ? ? phasing ? ? ? 11 DM . ? ? ? ? phasing ? ? ? 12 SOLVE . ? ? ? ? phasing ? ? ? 13 RESOLVE . ? ? ? ? phasing ? ? ? 14 HKL-3000 . ? ? ? ? phasing ? ? ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OD2 _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 ASP _pdbx_validate_close_contact.auth_seq_id_1 90 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OG _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 SER _pdbx_validate_close_contact.auth_seq_id_2 103 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 201 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 201 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 8_565 _pdbx_validate_symm_contact.dist 2.00 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ASP _pdbx_validate_rmsd_angle.auth_seq_id_1 28 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CG _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ASP _pdbx_validate_rmsd_angle.auth_seq_id_2 28 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OD1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ASP _pdbx_validate_rmsd_angle.auth_seq_id_3 28 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 123.75 _pdbx_validate_rmsd_angle.angle_target_value 118.30 _pdbx_validate_rmsd_angle.angle_deviation 5.45 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL B 18 ? ? -99.82 -63.59 2 1 LYS B 52 ? ? 45.54 -120.64 3 1 ARG B 75 ? A -89.44 -98.16 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A ALA 0 ? A ALA 3 4 1 Y 1 A MSE 1 ? A MSE 4 5 1 Y 1 A ALA 2 ? A ALA 5 6 1 Y 1 A SER 3 ? A SER 6 7 1 Y 1 A ASN 4 ? A ASN 7 8 1 Y 1 B SER -2 ? B SER 1 9 1 Y 1 B ASN -1 ? B ASN 2 10 1 Y 1 B ALA 0 ? B ALA 3 11 1 Y 1 B MSE 1 ? B MSE 4 12 1 Y 1 B ALA 2 ? B ALA 5 13 1 Y 1 B SER 3 ? B SER 6 14 1 Y 1 B ASN 4 ? B ASN 7 15 1 Y 1 B GLY 109 ? B GLY 112 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #