data_4KNQ # _entry.id 4KNQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4KNQ pdb_00004knq 10.2210/pdb4knq/pdb NDB NA2442 ? ? RCSB RCSB079567 ? ? WWPDB D_1000079567 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-05-14 2 'Structure model' 1 1 2017-11-15 3 'Structure model' 1 2 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' software 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' struct_ref_seq_dif 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 4KNQ _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-05-10 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4JGN ;Crystal structure of RNA silencing suppressor p19 with 1nt-5'-overhanging double-helical RNA 20mer pUUG(CUG)5CU ; unspecified PDB 4J5V 'Crystal structure of p19 in complex with double-helical RNA 19mer p(CAG)3C(CCG)3' unspecified PDB 4J39 'Crystal structure of p19 in complex with double-helical 19mer RNA p(CAG)3C(CUG)3' unspecified PDB 1R9F 'Crystal structure of p19 complexed with 19-bp small interfering RNA' unspecified PDB 4KQ0 'Crystal structure of double-helical CGG-repetitive RNA 19mer complexed with RSS p19' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tamjar, J.' 1 'Katorcha, E.' 2 'Popov, A.N.' 3 'Malinina, L.' 4 # _citation.id primary _citation.title 'Structural insights into CNG-repetitive RNAs associated with human Trinucleotide Repeat Expansion Diseases (TREDs)' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tamjar, J.' 1 ? primary 'Katorcha, E.' 2 ? primary 'Cabo, A.' 3 ? primary 'Delgado, S.' 4 ? primary 'Popov, A.N.' 5 ? primary 'Malinina, L.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(P*CP*CP*GP*CP*CP*GP*CP*CP*GP*CP*CP*GP*CP*CP*GP*CP*CP*GP*CP*G)-3'" 6338.846 1 ? ? ? 'siRNA pCCG(CCG)5CG' 2 polymer man 'RNA silencing suppressor p19' 14513.208 1 ? ? 'UNP residues 27-149' ? 3 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 4 water nat water 18.015 144 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name '19 kDa symptom severity modulator' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no CCGCCGCCGCCGCCGCCGCG CCGCCGCCGCCGCCGCCGCG B ? 2 'polypeptide(L)' no no ;GSHMTSPFKLPDESPSWTEWRLHNDETNSNQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRF FGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQELLQLAP ; ;GSHMTSPFKLPDESPSWTEWRLHNDETNSNQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRF FGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQELLQLAP ; A ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SULFATE ION' SO4 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 C n 1 3 G n 1 4 C n 1 5 C n 1 6 G n 1 7 C n 1 8 C n 1 9 G n 1 10 C n 1 11 C n 1 12 G n 1 13 C n 1 14 C n 1 15 G n 1 16 C n 1 17 C n 1 18 G n 1 19 C n 1 20 G n 2 1 GLY n 2 2 SER n 2 3 HIS n 2 4 MET n 2 5 THR n 2 6 SER n 2 7 PRO n 2 8 PHE n 2 9 LYS n 2 10 LEU n 2 11 PRO n 2 12 ASP n 2 13 GLU n 2 14 SER n 2 15 PRO n 2 16 SER n 2 17 TRP n 2 18 THR n 2 19 GLU n 2 20 TRP n 2 21 ARG n 2 22 LEU n 2 23 HIS n 2 24 ASN n 2 25 ASP n 2 26 GLU n 2 27 THR n 2 28 ASN n 2 29 SER n 2 30 ASN n 2 31 GLN n 2 32 ASP n 2 33 ASN n 2 34 PRO n 2 35 LEU n 2 36 GLY n 2 37 PHE n 2 38 LYS n 2 39 GLU n 2 40 SER n 2 41 TRP n 2 42 GLY n 2 43 PHE n 2 44 GLY n 2 45 LYS n 2 46 VAL n 2 47 VAL n 2 48 PHE n 2 49 LYS n 2 50 ARG n 2 51 TYR n 2 52 LEU n 2 53 ARG n 2 54 TYR n 2 55 ASP n 2 56 ARG n 2 57 THR n 2 58 GLU n 2 59 ALA n 2 60 SER n 2 61 LEU n 2 62 HIS n 2 63 ARG n 2 64 VAL n 2 65 LEU n 2 66 GLY n 2 67 SER n 2 68 TRP n 2 69 THR n 2 70 GLY n 2 71 ASP n 2 72 SER n 2 73 VAL n 2 74 ASN n 2 75 TYR n 2 76 ALA n 2 77 ALA n 2 78 SER n 2 79 ARG n 2 80 PHE n 2 81 PHE n 2 82 GLY n 2 83 PHE n 2 84 ASP n 2 85 GLN n 2 86 ILE n 2 87 GLY n 2 88 CYS n 2 89 THR n 2 90 TYR n 2 91 SER n 2 92 ILE n 2 93 ARG n 2 94 PHE n 2 95 ARG n 2 96 GLY n 2 97 VAL n 2 98 SER n 2 99 ILE n 2 100 THR n 2 101 VAL n 2 102 SER n 2 103 GLY n 2 104 GLY n 2 105 SER n 2 106 ARG n 2 107 THR n 2 108 LEU n 2 109 GLN n 2 110 HIS n 2 111 LEU n 2 112 CYS n 2 113 GLU n 2 114 MET n 2 115 ALA n 2 116 ILE n 2 117 ARG n 2 118 SER n 2 119 LYS n 2 120 GLN n 2 121 GLU n 2 122 LEU n 2 123 LEU n 2 124 GLN n 2 125 LEU n 2 126 ALA n 2 127 PRO n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name TBSV _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ORF4 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Tomato bushy stunt virus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 12145 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 201 201 C C B . n A 1 2 C 2 202 202 C C B . n A 1 3 G 3 203 203 G G B . n A 1 4 C 4 204 204 C C B . n A 1 5 C 5 205 205 C C B . n A 1 6 G 6 206 206 G G B . n A 1 7 C 7 207 207 C C B . n A 1 8 C 8 208 208 C C B . n A 1 9 G 9 209 209 G G B . n A 1 10 C 10 210 210 C C B . n A 1 11 C 11 211 211 C C B . n A 1 12 G 12 212 212 G G B . n A 1 13 C 13 213 213 C C B . n A 1 14 C 14 214 214 C C B . n A 1 15 G 15 215 215 G G B . n A 1 16 C 16 216 216 C C B . n A 1 17 C 17 217 217 C C B . n A 1 18 G 18 218 218 G G B . n A 1 19 C 19 219 219 C C B . n A 1 20 G 20 220 220 G G B . n B 2 1 GLY 1 1 ? ? ? A . n B 2 2 SER 2 2 ? ? ? A . n B 2 3 HIS 3 3 3 HIS HIS A . n B 2 4 MET 4 4 4 MET MET A . n B 2 5 THR 5 5 5 THR THR A . n B 2 6 SER 6 6 6 SER SER A . n B 2 7 PRO 7 7 7 PRO PRO A . n B 2 8 PHE 8 8 8 PHE PHE A . n B 2 9 LYS 9 9 9 LYS LYS A . n B 2 10 LEU 10 10 10 LEU LEU A . n B 2 11 PRO 11 11 11 PRO PRO A . n B 2 12 ASP 12 12 12 ASP ASP A . n B 2 13 GLU 13 13 13 GLU GLU A . n B 2 14 SER 14 14 14 SER SER A . n B 2 15 PRO 15 15 15 PRO PRO A . n B 2 16 SER 16 16 16 SER SER A . n B 2 17 TRP 17 17 17 TRP TRP A . n B 2 18 THR 18 18 18 THR THR A . n B 2 19 GLU 19 19 19 GLU GLU A . n B 2 20 TRP 20 20 20 TRP TRP A . n B 2 21 ARG 21 21 21 ARG ARG A . n B 2 22 LEU 22 22 22 LEU LEU A . n B 2 23 HIS 23 23 23 HIS HIS A . n B 2 24 ASN 24 24 24 ASN ASN A . n B 2 25 ASP 25 25 25 ASP ASP A . n B 2 26 GLU 26 26 26 GLU GLU A . n B 2 27 THR 27 27 27 THR THR A . n B 2 28 ASN 28 28 ? ? ? A . n B 2 29 SER 29 29 ? ? ? A . n B 2 30 ASN 30 30 ? ? ? A . n B 2 31 GLN 31 31 31 GLN GLN A . n B 2 32 ASP 32 32 32 ASP ASP A . n B 2 33 ASN 33 33 33 ASN ASN A . n B 2 34 PRO 34 34 34 PRO PRO A . n B 2 35 LEU 35 35 35 LEU LEU A . n B 2 36 GLY 36 36 36 GLY GLY A . n B 2 37 PHE 37 37 37 PHE PHE A . n B 2 38 LYS 38 38 38 LYS LYS A . n B 2 39 GLU 39 39 39 GLU GLU A . n B 2 40 SER 40 40 40 SER SER A . n B 2 41 TRP 41 41 41 TRP TRP A . n B 2 42 GLY 42 42 42 GLY GLY A . n B 2 43 PHE 43 43 43 PHE PHE A . n B 2 44 GLY 44 44 44 GLY GLY A . n B 2 45 LYS 45 45 45 LYS LYS A . n B 2 46 VAL 46 46 46 VAL VAL A . n B 2 47 VAL 47 47 47 VAL VAL A . n B 2 48 PHE 48 48 48 PHE PHE A . n B 2 49 LYS 49 49 49 LYS LYS A . n B 2 50 ARG 50 50 50 ARG ARG A . n B 2 51 TYR 51 51 51 TYR TYR A . n B 2 52 LEU 52 52 52 LEU LEU A . n B 2 53 ARG 53 53 53 ARG ARG A . n B 2 54 TYR 54 54 54 TYR TYR A . n B 2 55 ASP 55 55 55 ASP ASP A . n B 2 56 ARG 56 56 56 ARG ARG A . n B 2 57 THR 57 57 57 THR THR A . n B 2 58 GLU 58 58 58 GLU GLU A . n B 2 59 ALA 59 59 59 ALA ALA A . n B 2 60 SER 60 60 60 SER SER A . n B 2 61 LEU 61 61 61 LEU LEU A . n B 2 62 HIS 62 62 62 HIS HIS A . n B 2 63 ARG 63 63 63 ARG ARG A . n B 2 64 VAL 64 64 64 VAL VAL A . n B 2 65 LEU 65 65 65 LEU LEU A . n B 2 66 GLY 66 66 66 GLY GLY A . n B 2 67 SER 67 67 67 SER SER A . n B 2 68 TRP 68 68 68 TRP TRP A . n B 2 69 THR 69 69 69 THR THR A . n B 2 70 GLY 70 70 70 GLY GLY A . n B 2 71 ASP 71 71 71 ASP ASP A . n B 2 72 SER 72 72 72 SER SER A . n B 2 73 VAL 73 73 73 VAL VAL A . n B 2 74 ASN 74 74 74 ASN ASN A . n B 2 75 TYR 75 75 75 TYR TYR A . n B 2 76 ALA 76 76 76 ALA ALA A . n B 2 77 ALA 77 77 77 ALA ALA A . n B 2 78 SER 78 78 78 SER SER A . n B 2 79 ARG 79 79 79 ARG ARG A . n B 2 80 PHE 80 80 80 PHE PHE A . n B 2 81 PHE 81 81 81 PHE PHE A . n B 2 82 GLY 82 82 82 GLY GLY A . n B 2 83 PHE 83 83 83 PHE PHE A . n B 2 84 ASP 84 84 84 ASP ASP A . n B 2 85 GLN 85 85 85 GLN GLN A . n B 2 86 ILE 86 86 86 ILE ILE A . n B 2 87 GLY 87 87 87 GLY GLY A . n B 2 88 CYS 88 88 88 CYS CYS A . n B 2 89 THR 89 89 89 THR THR A . n B 2 90 TYR 90 90 90 TYR TYR A . n B 2 91 SER 91 91 91 SER SER A . n B 2 92 ILE 92 92 92 ILE ILE A . n B 2 93 ARG 93 93 93 ARG ARG A . n B 2 94 PHE 94 94 94 PHE PHE A . n B 2 95 ARG 95 95 95 ARG ARG A . n B 2 96 GLY 96 96 96 GLY GLY A . n B 2 97 VAL 97 97 97 VAL VAL A . n B 2 98 SER 98 98 98 SER SER A . n B 2 99 ILE 99 99 99 ILE ILE A . n B 2 100 THR 100 100 100 THR THR A . n B 2 101 VAL 101 101 101 VAL VAL A . n B 2 102 SER 102 102 102 SER SER A . n B 2 103 GLY 103 103 103 GLY GLY A . n B 2 104 GLY 104 104 104 GLY GLY A . n B 2 105 SER 105 105 105 SER SER A . n B 2 106 ARG 106 106 106 ARG ARG A . n B 2 107 THR 107 107 107 THR THR A . n B 2 108 LEU 108 108 108 LEU LEU A . n B 2 109 GLN 109 109 109 GLN GLN A . n B 2 110 HIS 110 110 110 HIS HIS A . n B 2 111 LEU 111 111 111 LEU LEU A . n B 2 112 CYS 112 112 112 CYS CYS A . n B 2 113 GLU 113 113 113 GLU GLU A . n B 2 114 MET 114 114 114 MET MET A . n B 2 115 ALA 115 115 115 ALA ALA A . n B 2 116 ILE 116 116 116 ILE ILE A . n B 2 117 ARG 117 117 117 ARG ARG A . n B 2 118 SER 118 118 118 SER SER A . n B 2 119 LYS 119 119 119 LYS LYS A . n B 2 120 GLN 120 120 120 GLN GLN A . n B 2 121 GLU 121 121 121 GLU GLU A . n B 2 122 LEU 122 122 122 LEU LEU A . n B 2 123 LEU 123 123 123 LEU LEU A . n B 2 124 GLN 124 124 124 GLN GLN A . n B 2 125 LEU 125 125 125 LEU LEU A . n B 2 126 ALA 126 126 126 ALA ALA A . n B 2 127 PRO 127 127 127 PRO PRO A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 1 601 601 SO4 SO4 B . D 3 SO4 1 602 602 SO4 SO4 B . E 3 SO4 1 201 603 SO4 SO4 A . F 4 HOH 1 701 1 HOH HOH B . F 4 HOH 2 702 2 HOH HOH B . F 4 HOH 3 703 3 HOH HOH B . F 4 HOH 4 704 11 HOH HOH B . F 4 HOH 5 705 13 HOH HOH B . F 4 HOH 6 706 18 HOH HOH B . F 4 HOH 7 707 19 HOH HOH B . F 4 HOH 8 708 31 HOH HOH B . F 4 HOH 9 709 32 HOH HOH B . F 4 HOH 10 710 33 HOH HOH B . F 4 HOH 11 711 38 HOH HOH B . F 4 HOH 12 712 46 HOH HOH B . F 4 HOH 13 713 57 HOH HOH B . F 4 HOH 14 714 58 HOH HOH B . F 4 HOH 15 715 70 HOH HOH B . F 4 HOH 16 716 73 HOH HOH B . F 4 HOH 17 717 77 HOH HOH B . F 4 HOH 18 718 86 HOH HOH B . F 4 HOH 19 719 96 HOH HOH B . F 4 HOH 20 720 102 HOH HOH B . F 4 HOH 21 721 105 HOH HOH B . F 4 HOH 22 722 124 HOH HOH B . F 4 HOH 23 723 127 HOH HOH B . F 4 HOH 24 724 134 HOH HOH B . F 4 HOH 25 725 137 HOH HOH B . F 4 HOH 26 726 140 HOH HOH B . F 4 HOH 27 727 146 HOH HOH B . F 4 HOH 28 728 148 HOH HOH B . F 4 HOH 29 729 151 HOH HOH B . G 4 HOH 1 301 4 HOH HOH A . G 4 HOH 2 302 5 HOH HOH A . G 4 HOH 3 303 6 HOH HOH A . G 4 HOH 4 304 7 HOH HOH A . G 4 HOH 5 305 8 HOH HOH A . G 4 HOH 6 306 9 HOH HOH A . G 4 HOH 7 307 10 HOH HOH A . G 4 HOH 8 308 12 HOH HOH A . G 4 HOH 9 309 14 HOH HOH A . G 4 HOH 10 310 15 HOH HOH A . G 4 HOH 11 311 16 HOH HOH A . G 4 HOH 12 312 17 HOH HOH A . G 4 HOH 13 313 20 HOH HOH A . G 4 HOH 14 314 21 HOH HOH A . G 4 HOH 15 315 22 HOH HOH A . G 4 HOH 16 316 23 HOH HOH A . G 4 HOH 17 317 24 HOH HOH A . G 4 HOH 18 318 35 HOH HOH A . G 4 HOH 19 319 36 HOH HOH A . G 4 HOH 20 320 37 HOH HOH A . G 4 HOH 21 321 39 HOH HOH A . G 4 HOH 22 322 40 HOH HOH A . G 4 HOH 23 323 41 HOH HOH A . G 4 HOH 24 324 42 HOH HOH A . G 4 HOH 25 325 43 HOH HOH A . G 4 HOH 26 326 44 HOH HOH A . G 4 HOH 27 327 45 HOH HOH A . G 4 HOH 28 328 47 HOH HOH A . G 4 HOH 29 329 48 HOH HOH A . G 4 HOH 30 330 49 HOH HOH A . G 4 HOH 31 331 50 HOH HOH A . G 4 HOH 32 332 51 HOH HOH A . G 4 HOH 33 333 52 HOH HOH A . G 4 HOH 34 334 53 HOH HOH A . G 4 HOH 35 335 54 HOH HOH A . G 4 HOH 36 336 55 HOH HOH A . G 4 HOH 37 337 56 HOH HOH A . G 4 HOH 38 338 59 HOH HOH A . G 4 HOH 39 339 60 HOH HOH A . G 4 HOH 40 340 61 HOH HOH A . G 4 HOH 41 341 62 HOH HOH A . G 4 HOH 42 342 63 HOH HOH A . G 4 HOH 43 343 64 HOH HOH A . G 4 HOH 44 344 65 HOH HOH A . G 4 HOH 45 345 66 HOH HOH A . G 4 HOH 46 346 67 HOH HOH A . G 4 HOH 47 347 68 HOH HOH A . G 4 HOH 48 348 71 HOH HOH A . G 4 HOH 49 349 72 HOH HOH A . G 4 HOH 50 350 74 HOH HOH A . G 4 HOH 51 351 75 HOH HOH A . G 4 HOH 52 352 78 HOH HOH A . G 4 HOH 53 353 79 HOH HOH A . G 4 HOH 54 354 80 HOH HOH A . G 4 HOH 55 355 81 HOH HOH A . G 4 HOH 56 356 83 HOH HOH A . G 4 HOH 57 357 84 HOH HOH A . G 4 HOH 58 358 85 HOH HOH A . G 4 HOH 59 359 87 HOH HOH A . G 4 HOH 60 360 88 HOH HOH A . G 4 HOH 61 361 89 HOH HOH A . G 4 HOH 62 362 90 HOH HOH A . G 4 HOH 63 363 91 HOH HOH A . G 4 HOH 64 364 92 HOH HOH A . G 4 HOH 65 365 93 HOH HOH A . G 4 HOH 66 366 94 HOH HOH A . G 4 HOH 67 367 95 HOH HOH A . G 4 HOH 68 368 97 HOH HOH A . G 4 HOH 69 369 99 HOH HOH A . G 4 HOH 70 370 100 HOH HOH A . G 4 HOH 71 371 101 HOH HOH A . G 4 HOH 72 372 103 HOH HOH A . G 4 HOH 73 373 104 HOH HOH A . G 4 HOH 74 374 106 HOH HOH A . G 4 HOH 75 375 107 HOH HOH A . G 4 HOH 76 376 108 HOH HOH A . G 4 HOH 77 377 109 HOH HOH A . G 4 HOH 78 378 110 HOH HOH A . G 4 HOH 79 379 112 HOH HOH A . G 4 HOH 80 380 113 HOH HOH A . G 4 HOH 81 381 114 HOH HOH A . G 4 HOH 82 382 115 HOH HOH A . G 4 HOH 83 383 116 HOH HOH A . G 4 HOH 84 384 117 HOH HOH A . G 4 HOH 85 385 118 HOH HOH A . G 4 HOH 86 386 119 HOH HOH A . G 4 HOH 87 387 120 HOH HOH A . G 4 HOH 88 388 121 HOH HOH A . G 4 HOH 89 389 122 HOH HOH A . G 4 HOH 90 390 123 HOH HOH A . G 4 HOH 91 391 125 HOH HOH A . G 4 HOH 92 392 126 HOH HOH A . G 4 HOH 93 393 128 HOH HOH A . G 4 HOH 94 394 129 HOH HOH A . G 4 HOH 95 395 130 HOH HOH A . G 4 HOH 96 396 131 HOH HOH A . G 4 HOH 97 397 132 HOH HOH A . G 4 HOH 98 398 133 HOH HOH A . G 4 HOH 99 399 135 HOH HOH A . G 4 HOH 100 400 136 HOH HOH A . G 4 HOH 101 401 138 HOH HOH A . G 4 HOH 102 402 139 HOH HOH A . G 4 HOH 103 403 141 HOH HOH A . G 4 HOH 104 404 142 HOH HOH A . G 4 HOH 105 405 143 HOH HOH A . G 4 HOH 106 406 144 HOH HOH A . G 4 HOH 107 407 145 HOH HOH A . G 4 HOH 108 408 147 HOH HOH A . G 4 HOH 109 409 149 HOH HOH A . G 4 HOH 110 410 152 HOH HOH A . G 4 HOH 111 411 153 HOH HOH A . G 4 HOH 112 412 154 HOH HOH A . G 4 HOH 113 413 155 HOH HOH A . G 4 HOH 114 414 156 HOH HOH A . G 4 HOH 115 415 157 HOH HOH A . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 ADSC Quantum ? ? ? ? 'data collection' ? ? ? 6 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 7 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 8 REFMAC . ? ? ? ? phasing ? ? ? # _cell.length_a 91.217 _cell.length_b 91.217 _cell.length_c 147.815 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 4KNQ _cell.pdbx_unique_axis ? _cell.Z_PDB 18 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'H 3 2' _symmetry.entry_id 4KNQ _symmetry.Int_Tables_number 155 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.entry_id 4KNQ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.84 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 56.66 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.pdbx_details '1.8 M ammonium sulfate, 0.1 M MES, pH 6, VAPOR DIFFUSION, HANGING DROP, temperature 291K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'channel cut Si(111)' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9395 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.pdbx_wavelength_list 0.9395 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-4 # _reflns.entry_id 4KNQ _reflns.d_resolution_high 1.820 _reflns.d_resolution_low 50.0 _reflns.number_obs 21280 _reflns.pdbx_Rmerge_I_obs 0.139 _reflns.pdbx_netI_over_sigmaI 15.5 _reflns.pdbx_chi_squared 1.799 _reflns.pdbx_redundancy 5.2 _reflns.percent_possible_obs 98.6 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.820 1.890 ? ? ? 0.850 ? ? 2.919 4.4 ? 1981 93.6 1 1 1.890 1.960 ? ? ? 0.648 ? ? 3.329 5.5 ? 2107 98.8 2 1 1.960 2.050 ? ? ? 0.400 ? ? 2.236 5.5 ? 2105 98.9 3 1 2.050 2.160 ? ? ? 0.298 ? ? 1.960 5.5 ? 2120 99.1 4 1 2.160 2.290 ? ? ? 0.213 ? ? 1.706 5.5 ? 2106 99.2 5 1 2.290 2.470 ? ? ? 0.184 ? ? 1.715 5.4 ? 2147 99.1 6 1 2.470 2.720 ? ? ? 0.150 ? ? 1.275 5.4 ? 2130 99.3 7 1 2.720 3.110 ? ? ? 0.130 ? ? 1.195 5.3 ? 2157 99.6 8 1 3.110 3.920 ? ? ? 0.121 ? ? 0.917 5.1 ? 2175 99.6 9 1 3.920 50.000 ? ? ? 0.133 ? ? 0.900 4.8 ? 2252 99.2 10 1 # _refine.entry_id 4KNQ _refine.ls_d_res_high 1.820 _refine.ls_d_res_low 15.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 97.85 _refine.ls_number_reflns_obs 21136 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1834 _refine.ls_R_factor_R_work 0.1821 _refine.ls_wR_factor_R_work 0.2155 _refine.ls_R_factor_R_free 0.2090 _refine.ls_wR_factor_R_free 0.2482 _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 1083 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 54.4136 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 1.0800 _refine.aniso_B[2][2] 1.0800 _refine.aniso_B[3][3] -3.4900 _refine.aniso_B[1][2] 1.0800 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9670 _refine.correlation_coeff_Fo_to_Fc_free 0.9560 _refine.overall_SU_R_Cruickshank_DPI 0.1153 _refine.overall_SU_R_free 0.1095 _refine.pdbx_overall_ESU_R 0.1150 _refine.pdbx_overall_ESU_R_Free 0.1090 _refine.overall_SU_ML 0.0850 _refine.overall_SU_B 5.6560 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8419 _refine.B_iso_max 147.760 _refine.B_iso_min 23.710 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.330 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 992 _refine_hist.pdbx_number_atoms_nucleic_acid 422 _refine_hist.pdbx_number_atoms_ligand 15 _refine_hist.number_atoms_solvent 144 _refine_hist.number_atoms_total 1573 _refine_hist.d_res_high 1.820 _refine_hist.d_res_low 15.0 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1514 0.021 0.017 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1143 0.007 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2148 1.995 1.728 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 2649 1.683 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 120 6.190 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 52 39.982 22.308 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 174 15.105 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 10 19.467 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 225 0.177 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1398 0.011 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 389 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 486 3.303 2.601 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 485 3.255 2.590 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 604 4.561 3.853 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.82 _refine_ls_shell.d_res_low 1.864 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 88.44 _refine_ls_shell.number_reflns_R_work 1303 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3460 _refine_ls_shell.R_factor_R_free 0.3680 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 66 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1369 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4KNQ _struct.title ;Crystal structure of 1nt-5'-overhanging double-helical CCG-repetitive RNA 20mer complexed with RSS p19 ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4KNQ _struct_keywords.text 'RNA silencing suppression, trinucleotide repeats, dimer, RNA BINDING PROTEIN-RNA complex' _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN/RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP P19_TBSVK P69517 2 ;TSPFKLPDESPSWTEWRLHNDETNSNQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRFFGFD QIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQELLQLAP ; 27 ? 2 PDB 4KNQ 4KNQ 1 CCGCCGCCGCCGCCGCCGCG 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4KNQ A 5 ? 127 ? P69517 27 ? 149 ? 5 127 2 2 4KNQ B 1 ? 20 ? 4KNQ 201 ? 220 ? 201 220 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4KNQ GLY A 1 ? UNP P69517 ? ? 'expression tag' 1 1 1 4KNQ SER A 2 ? UNP P69517 ? ? 'expression tag' 2 2 1 4KNQ HIS A 3 ? UNP P69517 ? ? 'expression tag' 3 3 1 4KNQ MET A 4 ? UNP P69517 ? ? 'expression tag' 4 4 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 8540 ? 1 MORE -128 ? 1 'SSA (A^2)' 17290 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 y,x,-z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details 'THE BIOLOGICAL UNIT IS A P19 HOMODIMER BOUND TO DOUBLE-STRANDED RNA.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER B 16 ? THR B 27 ? SER A 16 THR A 27 1 ? 12 HELX_P HELX_P2 2 THR B 57 ? GLY B 66 ? THR A 57 GLY A 66 1 ? 10 HELX_P HELX_P3 3 THR B 69 ? ARG B 79 ? THR A 69 ARG A 79 1 ? 11 HELX_P HELX_P4 4 THR B 107 ? GLN B 124 ? THR A 107 GLN A 124 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 20 N1 ? ? B C 202 B G 220 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 20 O6 ? ? B C 202 B G 220 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 20 N2 ? ? B C 202 B G 220 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 19 N3 ? ? B G 203 B C 219 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 19 O2 ? ? B G 203 B C 219 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 19 N4 ? ? B G 203 B C 219 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 18 N1 ? ? B C 204 B G 218 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 18 O6 ? ? B C 204 B G 218 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 18 N2 ? ? B C 204 B G 218 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 5 N4 ? ? ? 1_555 A C 17 N3 ? ? B C 205 B C 217 4_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog11 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 16 N3 ? ? B G 206 B C 216 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 16 O2 ? ? B G 206 B C 216 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 16 N4 ? ? B G 206 B C 216 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 15 N1 ? ? B C 207 B G 215 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 15 O6 ? ? B C 207 B G 215 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 15 N2 ? ? B C 207 B G 215 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 13 N3 ? ? B G 209 B C 213 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 13 O2 ? ? B G 209 B C 213 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 13 N4 ? ? B G 209 B C 213 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 10 N3 ? ? ? 1_555 A G 12 N1 ? ? B C 210 B G 212 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 10 N4 ? ? ? 1_555 A G 12 O6 ? ? B C 210 B G 212 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 10 O2 ? ? ? 1_555 A G 12 N2 ? ? B C 210 B G 212 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 10 N3 ? ? B G 212 B C 210 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 10 O2 ? ? B G 212 B C 210 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 10 N4 ? ? B G 212 B C 210 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 9 N1 ? ? B C 213 B G 209 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 9 O6 ? ? B C 213 B G 209 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 9 N2 ? ? B C 213 B G 209 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 7 N3 ? ? B G 215 B C 207 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 7 O2 ? ? B G 215 B C 207 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 7 N4 ? ? B G 215 B C 207 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 16 N3 ? ? ? 1_555 A G 6 N1 ? ? B C 216 B G 206 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 16 N4 ? ? ? 1_555 A G 6 O6 ? ? B C 216 B G 206 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 16 O2 ? ? ? 1_555 A G 6 N2 ? ? B C 216 B G 206 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 17 N3 ? ? ? 1_555 A C 5 N4 ? ? B C 217 B C 205 4_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog36 hydrog ? ? A G 18 N1 ? ? ? 1_555 A C 4 N3 ? ? B G 218 B C 204 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 18 N2 ? ? ? 1_555 A C 4 O2 ? ? B G 218 B C 204 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 18 O6 ? ? ? 1_555 A C 4 N4 ? ? B G 218 B C 204 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 19 N3 ? ? ? 1_555 A G 3 N1 ? ? B C 219 B G 203 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 19 N4 ? ? ? 1_555 A G 3 O6 ? ? B C 219 B G 203 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 19 O2 ? ? ? 1_555 A G 3 N2 ? ? B C 219 B G 203 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 20 N1 ? ? ? 1_555 A C 2 N3 ? ? B G 220 B C 202 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 20 N2 ? ? ? 1_555 A C 2 O2 ? ? B G 220 B C 202 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 20 O6 ? ? ? 1_555 A C 2 N4 ? ? B G 220 B C 202 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL B 46 ? ARG B 53 ? VAL A 46 ARG A 53 A 2 GLY B 36 ? PHE B 43 ? GLY A 36 PHE A 43 A 3 GLY B 87 ? PHE B 94 ? GLY A 87 PHE A 94 A 4 VAL B 97 ? GLY B 104 ? VAL A 97 GLY A 104 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ARG B 50 ? O ARG A 50 N GLU B 39 ? N GLU A 39 A 2 3 N GLY B 42 ? N GLY A 42 O THR B 89 ? O THR A 89 A 3 4 N CYS B 88 ? N CYS A 88 O GLY B 103 ? O GLY A 103 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B SO4 601 ? 5 'BINDING SITE FOR RESIDUE SO4 B 601' AC2 Software B SO4 602 ? 4 'BINDING SITE FOR RESIDUE SO4 B 602' AC3 Software A SO4 201 ? 4 'BINDING SITE FOR RESIDUE SO4 A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 SER B 6 ? SER A 6 . ? 4_555 ? 2 AC1 5 PHE B 48 ? PHE A 48 . ? 4_555 ? 3 AC1 5 ARG B 50 ? ARG A 50 . ? 4_555 ? 4 AC1 5 HOH F . ? HOH B 712 . ? 1_555 ? 5 AC1 5 HOH F . ? HOH B 715 . ? 1_555 ? 6 AC2 4 SER B 16 ? SER A 16 . ? 4_555 ? 7 AC2 4 THR B 18 ? THR A 18 . ? 4_555 ? 8 AC2 4 HIS B 62 ? HIS A 62 . ? 15_554 ? 9 AC2 4 HOH F . ? HOH B 711 . ? 1_555 ? 10 AC3 4 GLY B 70 ? GLY A 70 . ? 4_555 ? 11 AC3 4 CYS B 112 ? CYS A 112 . ? 4_555 ? 12 AC3 4 ILE B 116 ? ILE A 116 . ? 4_555 ? 13 AC3 4 HOH G . ? HOH A 307 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 406 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 407 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.16 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 369 ? ? 1_555 O A HOH 369 ? ? 4_555 1.81 2 1 O A HOH 403 ? ? 1_555 O A HOH 403 ? ? 12_555 2.06 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 50 ? ? CZ A ARG 50 ? ? NH1 A ARG 50 ? ? 125.43 120.30 5.13 0.50 N 2 1 NE A ARG 50 ? ? CZ A ARG 50 ? ? NH2 A ARG 50 ? ? 117.21 120.30 -3.09 0.50 N 3 1 CB A LEU 65 ? ? CG A LEU 65 ? ? CD1 A LEU 65 ? ? 121.96 111.00 10.96 1.70 N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 308 ? G HOH . 2 1 A HOH 348 ? G HOH . 3 1 A HOH 411 ? G HOH . # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 14.1237 35.3901 10.9014 0.1632 0.1379 0.1431 0.0158 0.0159 -0.0053 0.0240 0.0127 0.8779 0.0016 -0.0668 0.0188 -0.0120 -0.0340 0.0460 -0.0310 -0.0042 0.0121 -0.0331 -0.0079 0.0599 'X-RAY DIFFRACTION' 2 ? refined 26.1380 47.1891 -0.4760 0.3336 0.2208 0.0697 -0.0890 -0.0048 0.0361 0.0598 0.0575 0.0520 0.0040 -0.0547 -0.0012 0.0831 -0.0689 -0.0143 -0.0976 -0.0186 0.0427 -0.0302 -0.1154 0.0795 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 3 A 127 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B 201 B 220 ? . . . . ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 1 ? B GLY 1 2 1 Y 1 A SER 2 ? B SER 2 3 1 Y 1 A ASN 28 ? B ASN 28 4 1 Y 1 A SER 29 ? B SER 29 5 1 Y 1 A ASN 30 ? B ASN 30 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 C OP3 O N N 74 C P P N N 75 C OP1 O N N 76 C OP2 O N N 77 C "O5'" O N N 78 C "C5'" C N N 79 C "C4'" C N R 80 C "O4'" O N N 81 C "C3'" C N S 82 C "O3'" O N N 83 C "C2'" C N R 84 C "O2'" O N N 85 C "C1'" C N R 86 C N1 N N N 87 C C2 C N N 88 C O2 O N N 89 C N3 N N N 90 C C4 C N N 91 C N4 N N N 92 C C5 C N N 93 C C6 C N N 94 C HOP3 H N N 95 C HOP2 H N N 96 C "H5'" H N N 97 C "H5''" H N N 98 C "H4'" H N N 99 C "H3'" H N N 100 C "HO3'" H N N 101 C "H2'" H N N 102 C "HO2'" H N N 103 C "H1'" H N N 104 C H41 H N N 105 C H42 H N N 106 C H5 H N N 107 C H6 H N N 108 CYS N N N N 109 CYS CA C N R 110 CYS C C N N 111 CYS O O N N 112 CYS CB C N N 113 CYS SG S N N 114 CYS OXT O N N 115 CYS H H N N 116 CYS H2 H N N 117 CYS HA H N N 118 CYS HB2 H N N 119 CYS HB3 H N N 120 CYS HG H N N 121 CYS HXT H N N 122 G OP3 O N N 123 G P P N N 124 G OP1 O N N 125 G OP2 O N N 126 G "O5'" O N N 127 G "C5'" C N N 128 G "C4'" C N R 129 G "O4'" O N N 130 G "C3'" C N S 131 G "O3'" O N N 132 G "C2'" C N R 133 G "O2'" O N N 134 G "C1'" C N R 135 G N9 N Y N 136 G C8 C Y N 137 G N7 N Y N 138 G C5 C Y N 139 G C6 C N N 140 G O6 O N N 141 G N1 N N N 142 G C2 C N N 143 G N2 N N N 144 G N3 N N N 145 G C4 C Y N 146 G HOP3 H N N 147 G HOP2 H N N 148 G "H5'" H N N 149 G "H5''" H N N 150 G "H4'" H N N 151 G "H3'" H N N 152 G "HO3'" H N N 153 G "H2'" H N N 154 G "HO2'" H N N 155 G "H1'" H N N 156 G H8 H N N 157 G H1 H N N 158 G H21 H N N 159 G H22 H N N 160 GLN N N N N 161 GLN CA C N S 162 GLN C C N N 163 GLN O O N N 164 GLN CB C N N 165 GLN CG C N N 166 GLN CD C N N 167 GLN OE1 O N N 168 GLN NE2 N N N 169 GLN OXT O N N 170 GLN H H N N 171 GLN H2 H N N 172 GLN HA H N N 173 GLN HB2 H N N 174 GLN HB3 H N N 175 GLN HG2 H N N 176 GLN HG3 H N N 177 GLN HE21 H N N 178 GLN HE22 H N N 179 GLN HXT H N N 180 GLU N N N N 181 GLU CA C N S 182 GLU C C N N 183 GLU O O N N 184 GLU CB C N N 185 GLU CG C N N 186 GLU CD C N N 187 GLU OE1 O N N 188 GLU OE2 O N N 189 GLU OXT O N N 190 GLU H H N N 191 GLU H2 H N N 192 GLU HA H N N 193 GLU HB2 H N N 194 GLU HB3 H N N 195 GLU HG2 H N N 196 GLU HG3 H N N 197 GLU HE2 H N N 198 GLU HXT H N N 199 GLY N N N N 200 GLY CA C N N 201 GLY C C N N 202 GLY O O N N 203 GLY OXT O N N 204 GLY H H N N 205 GLY H2 H N N 206 GLY HA2 H N N 207 GLY HA3 H N N 208 GLY HXT H N N 209 HIS N N N N 210 HIS CA C N S 211 HIS C C N N 212 HIS O O N N 213 HIS CB C N N 214 HIS CG C Y N 215 HIS ND1 N Y N 216 HIS CD2 C Y N 217 HIS CE1 C Y N 218 HIS NE2 N Y N 219 HIS OXT O N N 220 HIS H H N N 221 HIS H2 H N N 222 HIS HA H N N 223 HIS HB2 H N N 224 HIS HB3 H N N 225 HIS HD1 H N N 226 HIS HD2 H N N 227 HIS HE1 H N N 228 HIS HE2 H N N 229 HIS HXT H N N 230 HOH O O N N 231 HOH H1 H N N 232 HOH H2 H N N 233 ILE N N N N 234 ILE CA C N S 235 ILE C C N N 236 ILE O O N N 237 ILE CB C N S 238 ILE CG1 C N N 239 ILE CG2 C N N 240 ILE CD1 C N N 241 ILE OXT O N N 242 ILE H H N N 243 ILE H2 H N N 244 ILE HA H N N 245 ILE HB H N N 246 ILE HG12 H N N 247 ILE HG13 H N N 248 ILE HG21 H N N 249 ILE HG22 H N N 250 ILE HG23 H N N 251 ILE HD11 H N N 252 ILE HD12 H N N 253 ILE HD13 H N N 254 ILE HXT H N N 255 LEU N N N N 256 LEU CA C N S 257 LEU C C N N 258 LEU O O N N 259 LEU CB C N N 260 LEU CG C N N 261 LEU CD1 C N N 262 LEU CD2 C N N 263 LEU OXT O N N 264 LEU H H N N 265 LEU H2 H N N 266 LEU HA H N N 267 LEU HB2 H N N 268 LEU HB3 H N N 269 LEU HG H N N 270 LEU HD11 H N N 271 LEU HD12 H N N 272 LEU HD13 H N N 273 LEU HD21 H N N 274 LEU HD22 H N N 275 LEU HD23 H N N 276 LEU HXT H N N 277 LYS N N N N 278 LYS CA C N S 279 LYS C C N N 280 LYS O O N N 281 LYS CB C N N 282 LYS CG C N N 283 LYS CD C N N 284 LYS CE C N N 285 LYS NZ N N N 286 LYS OXT O N N 287 LYS H H N N 288 LYS H2 H N N 289 LYS HA H N N 290 LYS HB2 H N N 291 LYS HB3 H N N 292 LYS HG2 H N N 293 LYS HG3 H N N 294 LYS HD2 H N N 295 LYS HD3 H N N 296 LYS HE2 H N N 297 LYS HE3 H N N 298 LYS HZ1 H N N 299 LYS HZ2 H N N 300 LYS HZ3 H N N 301 LYS HXT H N N 302 MET N N N N 303 MET CA C N S 304 MET C C N N 305 MET O O N N 306 MET CB C N N 307 MET CG C N N 308 MET SD S N N 309 MET CE C N N 310 MET OXT O N N 311 MET H H N N 312 MET H2 H N N 313 MET HA H N N 314 MET HB2 H N N 315 MET HB3 H N N 316 MET HG2 H N N 317 MET HG3 H N N 318 MET HE1 H N N 319 MET HE2 H N N 320 MET HE3 H N N 321 MET HXT H N N 322 PHE N N N N 323 PHE CA C N S 324 PHE C C N N 325 PHE O O N N 326 PHE CB C N N 327 PHE CG C Y N 328 PHE CD1 C Y N 329 PHE CD2 C Y N 330 PHE CE1 C Y N 331 PHE CE2 C Y N 332 PHE CZ C Y N 333 PHE OXT O N N 334 PHE H H N N 335 PHE H2 H N N 336 PHE HA H N N 337 PHE HB2 H N N 338 PHE HB3 H N N 339 PHE HD1 H N N 340 PHE HD2 H N N 341 PHE HE1 H N N 342 PHE HE2 H N N 343 PHE HZ H N N 344 PHE HXT H N N 345 PRO N N N N 346 PRO CA C N S 347 PRO C C N N 348 PRO O O N N 349 PRO CB C N N 350 PRO CG C N N 351 PRO CD C N N 352 PRO OXT O N N 353 PRO H H N N 354 PRO HA H N N 355 PRO HB2 H N N 356 PRO HB3 H N N 357 PRO HG2 H N N 358 PRO HG3 H N N 359 PRO HD2 H N N 360 PRO HD3 H N N 361 PRO HXT H N N 362 SER N N N N 363 SER CA C N S 364 SER C C N N 365 SER O O N N 366 SER CB C N N 367 SER OG O N N 368 SER OXT O N N 369 SER H H N N 370 SER H2 H N N 371 SER HA H N N 372 SER HB2 H N N 373 SER HB3 H N N 374 SER HG H N N 375 SER HXT H N N 376 SO4 S S N N 377 SO4 O1 O N N 378 SO4 O2 O N N 379 SO4 O3 O N N 380 SO4 O4 O N N 381 THR N N N N 382 THR CA C N S 383 THR C C N N 384 THR O O N N 385 THR CB C N R 386 THR OG1 O N N 387 THR CG2 C N N 388 THR OXT O N N 389 THR H H N N 390 THR H2 H N N 391 THR HA H N N 392 THR HB H N N 393 THR HG1 H N N 394 THR HG21 H N N 395 THR HG22 H N N 396 THR HG23 H N N 397 THR HXT H N N 398 TRP N N N N 399 TRP CA C N S 400 TRP C C N N 401 TRP O O N N 402 TRP CB C N N 403 TRP CG C Y N 404 TRP CD1 C Y N 405 TRP CD2 C Y N 406 TRP NE1 N Y N 407 TRP CE2 C Y N 408 TRP CE3 C Y N 409 TRP CZ2 C Y N 410 TRP CZ3 C Y N 411 TRP CH2 C Y N 412 TRP OXT O N N 413 TRP H H N N 414 TRP H2 H N N 415 TRP HA H N N 416 TRP HB2 H N N 417 TRP HB3 H N N 418 TRP HD1 H N N 419 TRP HE1 H N N 420 TRP HE3 H N N 421 TRP HZ2 H N N 422 TRP HZ3 H N N 423 TRP HH2 H N N 424 TRP HXT H N N 425 TYR N N N N 426 TYR CA C N S 427 TYR C C N N 428 TYR O O N N 429 TYR CB C N N 430 TYR CG C Y N 431 TYR CD1 C Y N 432 TYR CD2 C Y N 433 TYR CE1 C Y N 434 TYR CE2 C Y N 435 TYR CZ C Y N 436 TYR OH O N N 437 TYR OXT O N N 438 TYR H H N N 439 TYR H2 H N N 440 TYR HA H N N 441 TYR HB2 H N N 442 TYR HB3 H N N 443 TYR HD1 H N N 444 TYR HD2 H N N 445 TYR HE1 H N N 446 TYR HE2 H N N 447 TYR HH H N N 448 TYR HXT H N N 449 VAL N N N N 450 VAL CA C N S 451 VAL C C N N 452 VAL O O N N 453 VAL CB C N N 454 VAL CG1 C N N 455 VAL CG2 C N N 456 VAL OXT O N N 457 VAL H H N N 458 VAL H2 H N N 459 VAL HA H N N 460 VAL HB H N N 461 VAL HG11 H N N 462 VAL HG12 H N N 463 VAL HG13 H N N 464 VAL HG21 H N N 465 VAL HG22 H N N 466 VAL HG23 H N N 467 VAL HXT H N N 468 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 C OP3 P sing N N 70 C OP3 HOP3 sing N N 71 C P OP1 doub N N 72 C P OP2 sing N N 73 C P "O5'" sing N N 74 C OP2 HOP2 sing N N 75 C "O5'" "C5'" sing N N 76 C "C5'" "C4'" sing N N 77 C "C5'" "H5'" sing N N 78 C "C5'" "H5''" sing N N 79 C "C4'" "O4'" sing N N 80 C "C4'" "C3'" sing N N 81 C "C4'" "H4'" sing N N 82 C "O4'" "C1'" sing N N 83 C "C3'" "O3'" sing N N 84 C "C3'" "C2'" sing N N 85 C "C3'" "H3'" sing N N 86 C "O3'" "HO3'" sing N N 87 C "C2'" "O2'" sing N N 88 C "C2'" "C1'" sing N N 89 C "C2'" "H2'" sing N N 90 C "O2'" "HO2'" sing N N 91 C "C1'" N1 sing N N 92 C "C1'" "H1'" sing N N 93 C N1 C2 sing N N 94 C N1 C6 sing N N 95 C C2 O2 doub N N 96 C C2 N3 sing N N 97 C N3 C4 doub N N 98 C C4 N4 sing N N 99 C C4 C5 sing N N 100 C N4 H41 sing N N 101 C N4 H42 sing N N 102 C C5 C6 doub N N 103 C C5 H5 sing N N 104 C C6 H6 sing N N 105 CYS N CA sing N N 106 CYS N H sing N N 107 CYS N H2 sing N N 108 CYS CA C sing N N 109 CYS CA CB sing N N 110 CYS CA HA sing N N 111 CYS C O doub N N 112 CYS C OXT sing N N 113 CYS CB SG sing N N 114 CYS CB HB2 sing N N 115 CYS CB HB3 sing N N 116 CYS SG HG sing N N 117 CYS OXT HXT sing N N 118 G OP3 P sing N N 119 G OP3 HOP3 sing N N 120 G P OP1 doub N N 121 G P OP2 sing N N 122 G P "O5'" sing N N 123 G OP2 HOP2 sing N N 124 G "O5'" "C5'" sing N N 125 G "C5'" "C4'" sing N N 126 G "C5'" "H5'" sing N N 127 G "C5'" "H5''" sing N N 128 G "C4'" "O4'" sing N N 129 G "C4'" "C3'" sing N N 130 G "C4'" "H4'" sing N N 131 G "O4'" "C1'" sing N N 132 G "C3'" "O3'" sing N N 133 G "C3'" "C2'" sing N N 134 G "C3'" "H3'" sing N N 135 G "O3'" "HO3'" sing N N 136 G "C2'" "O2'" sing N N 137 G "C2'" "C1'" sing N N 138 G "C2'" "H2'" sing N N 139 G "O2'" "HO2'" sing N N 140 G "C1'" N9 sing N N 141 G "C1'" "H1'" sing N N 142 G N9 C8 sing Y N 143 G N9 C4 sing Y N 144 G C8 N7 doub Y N 145 G C8 H8 sing N N 146 G N7 C5 sing Y N 147 G C5 C6 sing N N 148 G C5 C4 doub Y N 149 G C6 O6 doub N N 150 G C6 N1 sing N N 151 G N1 C2 sing N N 152 G N1 H1 sing N N 153 G C2 N2 sing N N 154 G C2 N3 doub N N 155 G N2 H21 sing N N 156 G N2 H22 sing N N 157 G N3 C4 sing N N 158 GLN N CA sing N N 159 GLN N H sing N N 160 GLN N H2 sing N N 161 GLN CA C sing N N 162 GLN CA CB sing N N 163 GLN CA HA sing N N 164 GLN C O doub N N 165 GLN C OXT sing N N 166 GLN CB CG sing N N 167 GLN CB HB2 sing N N 168 GLN CB HB3 sing N N 169 GLN CG CD sing N N 170 GLN CG HG2 sing N N 171 GLN CG HG3 sing N N 172 GLN CD OE1 doub N N 173 GLN CD NE2 sing N N 174 GLN NE2 HE21 sing N N 175 GLN NE2 HE22 sing N N 176 GLN OXT HXT sing N N 177 GLU N CA sing N N 178 GLU N H sing N N 179 GLU N H2 sing N N 180 GLU CA C sing N N 181 GLU CA CB sing N N 182 GLU CA HA sing N N 183 GLU C O doub N N 184 GLU C OXT sing N N 185 GLU CB CG sing N N 186 GLU CB HB2 sing N N 187 GLU CB HB3 sing N N 188 GLU CG CD sing N N 189 GLU CG HG2 sing N N 190 GLU CG HG3 sing N N 191 GLU CD OE1 doub N N 192 GLU CD OE2 sing N N 193 GLU OE2 HE2 sing N N 194 GLU OXT HXT sing N N 195 GLY N CA sing N N 196 GLY N H sing N N 197 GLY N H2 sing N N 198 GLY CA C sing N N 199 GLY CA HA2 sing N N 200 GLY CA HA3 sing N N 201 GLY C O doub N N 202 GLY C OXT sing N N 203 GLY OXT HXT sing N N 204 HIS N CA sing N N 205 HIS N H sing N N 206 HIS N H2 sing N N 207 HIS CA C sing N N 208 HIS CA CB sing N N 209 HIS CA HA sing N N 210 HIS C O doub N N 211 HIS C OXT sing N N 212 HIS CB CG sing N N 213 HIS CB HB2 sing N N 214 HIS CB HB3 sing N N 215 HIS CG ND1 sing Y N 216 HIS CG CD2 doub Y N 217 HIS ND1 CE1 doub Y N 218 HIS ND1 HD1 sing N N 219 HIS CD2 NE2 sing Y N 220 HIS CD2 HD2 sing N N 221 HIS CE1 NE2 sing Y N 222 HIS CE1 HE1 sing N N 223 HIS NE2 HE2 sing N N 224 HIS OXT HXT sing N N 225 HOH O H1 sing N N 226 HOH O H2 sing N N 227 ILE N CA sing N N 228 ILE N H sing N N 229 ILE N H2 sing N N 230 ILE CA C sing N N 231 ILE CA CB sing N N 232 ILE CA HA sing N N 233 ILE C O doub N N 234 ILE C OXT sing N N 235 ILE CB CG1 sing N N 236 ILE CB CG2 sing N N 237 ILE CB HB sing N N 238 ILE CG1 CD1 sing N N 239 ILE CG1 HG12 sing N N 240 ILE CG1 HG13 sing N N 241 ILE CG2 HG21 sing N N 242 ILE CG2 HG22 sing N N 243 ILE CG2 HG23 sing N N 244 ILE CD1 HD11 sing N N 245 ILE CD1 HD12 sing N N 246 ILE CD1 HD13 sing N N 247 ILE OXT HXT sing N N 248 LEU N CA sing N N 249 LEU N H sing N N 250 LEU N H2 sing N N 251 LEU CA C sing N N 252 LEU CA CB sing N N 253 LEU CA HA sing N N 254 LEU C O doub N N 255 LEU C OXT sing N N 256 LEU CB CG sing N N 257 LEU CB HB2 sing N N 258 LEU CB HB3 sing N N 259 LEU CG CD1 sing N N 260 LEU CG CD2 sing N N 261 LEU CG HG sing N N 262 LEU CD1 HD11 sing N N 263 LEU CD1 HD12 sing N N 264 LEU CD1 HD13 sing N N 265 LEU CD2 HD21 sing N N 266 LEU CD2 HD22 sing N N 267 LEU CD2 HD23 sing N N 268 LEU OXT HXT sing N N 269 LYS N CA sing N N 270 LYS N H sing N N 271 LYS N H2 sing N N 272 LYS CA C sing N N 273 LYS CA CB sing N N 274 LYS CA HA sing N N 275 LYS C O doub N N 276 LYS C OXT sing N N 277 LYS CB CG sing N N 278 LYS CB HB2 sing N N 279 LYS CB HB3 sing N N 280 LYS CG CD sing N N 281 LYS CG HG2 sing N N 282 LYS CG HG3 sing N N 283 LYS CD CE sing N N 284 LYS CD HD2 sing N N 285 LYS CD HD3 sing N N 286 LYS CE NZ sing N N 287 LYS CE HE2 sing N N 288 LYS CE HE3 sing N N 289 LYS NZ HZ1 sing N N 290 LYS NZ HZ2 sing N N 291 LYS NZ HZ3 sing N N 292 LYS OXT HXT sing N N 293 MET N CA sing N N 294 MET N H sing N N 295 MET N H2 sing N N 296 MET CA C sing N N 297 MET CA CB sing N N 298 MET CA HA sing N N 299 MET C O doub N N 300 MET C OXT sing N N 301 MET CB CG sing N N 302 MET CB HB2 sing N N 303 MET CB HB3 sing N N 304 MET CG SD sing N N 305 MET CG HG2 sing N N 306 MET CG HG3 sing N N 307 MET SD CE sing N N 308 MET CE HE1 sing N N 309 MET CE HE2 sing N N 310 MET CE HE3 sing N N 311 MET OXT HXT sing N N 312 PHE N CA sing N N 313 PHE N H sing N N 314 PHE N H2 sing N N 315 PHE CA C sing N N 316 PHE CA CB sing N N 317 PHE CA HA sing N N 318 PHE C O doub N N 319 PHE C OXT sing N N 320 PHE CB CG sing N N 321 PHE CB HB2 sing N N 322 PHE CB HB3 sing N N 323 PHE CG CD1 doub Y N 324 PHE CG CD2 sing Y N 325 PHE CD1 CE1 sing Y N 326 PHE CD1 HD1 sing N N 327 PHE CD2 CE2 doub Y N 328 PHE CD2 HD2 sing N N 329 PHE CE1 CZ doub Y N 330 PHE CE1 HE1 sing N N 331 PHE CE2 CZ sing Y N 332 PHE CE2 HE2 sing N N 333 PHE CZ HZ sing N N 334 PHE OXT HXT sing N N 335 PRO N CA sing N N 336 PRO N CD sing N N 337 PRO N H sing N N 338 PRO CA C sing N N 339 PRO CA CB sing N N 340 PRO CA HA sing N N 341 PRO C O doub N N 342 PRO C OXT sing N N 343 PRO CB CG sing N N 344 PRO CB HB2 sing N N 345 PRO CB HB3 sing N N 346 PRO CG CD sing N N 347 PRO CG HG2 sing N N 348 PRO CG HG3 sing N N 349 PRO CD HD2 sing N N 350 PRO CD HD3 sing N N 351 PRO OXT HXT sing N N 352 SER N CA sing N N 353 SER N H sing N N 354 SER N H2 sing N N 355 SER CA C sing N N 356 SER CA CB sing N N 357 SER CA HA sing N N 358 SER C O doub N N 359 SER C OXT sing N N 360 SER CB OG sing N N 361 SER CB HB2 sing N N 362 SER CB HB3 sing N N 363 SER OG HG sing N N 364 SER OXT HXT sing N N 365 SO4 S O1 doub N N 366 SO4 S O2 doub N N 367 SO4 S O3 sing N N 368 SO4 S O4 sing N N 369 THR N CA sing N N 370 THR N H sing N N 371 THR N H2 sing N N 372 THR CA C sing N N 373 THR CA CB sing N N 374 THR CA HA sing N N 375 THR C O doub N N 376 THR C OXT sing N N 377 THR CB OG1 sing N N 378 THR CB CG2 sing N N 379 THR CB HB sing N N 380 THR OG1 HG1 sing N N 381 THR CG2 HG21 sing N N 382 THR CG2 HG22 sing N N 383 THR CG2 HG23 sing N N 384 THR OXT HXT sing N N 385 TRP N CA sing N N 386 TRP N H sing N N 387 TRP N H2 sing N N 388 TRP CA C sing N N 389 TRP CA CB sing N N 390 TRP CA HA sing N N 391 TRP C O doub N N 392 TRP C OXT sing N N 393 TRP CB CG sing N N 394 TRP CB HB2 sing N N 395 TRP CB HB3 sing N N 396 TRP CG CD1 doub Y N 397 TRP CG CD2 sing Y N 398 TRP CD1 NE1 sing Y N 399 TRP CD1 HD1 sing N N 400 TRP CD2 CE2 doub Y N 401 TRP CD2 CE3 sing Y N 402 TRP NE1 CE2 sing Y N 403 TRP NE1 HE1 sing N N 404 TRP CE2 CZ2 sing Y N 405 TRP CE3 CZ3 doub Y N 406 TRP CE3 HE3 sing N N 407 TRP CZ2 CH2 doub Y N 408 TRP CZ2 HZ2 sing N N 409 TRP CZ3 CH2 sing Y N 410 TRP CZ3 HZ3 sing N N 411 TRP CH2 HH2 sing N N 412 TRP OXT HXT sing N N 413 TYR N CA sing N N 414 TYR N H sing N N 415 TYR N H2 sing N N 416 TYR CA C sing N N 417 TYR CA CB sing N N 418 TYR CA HA sing N N 419 TYR C O doub N N 420 TYR C OXT sing N N 421 TYR CB CG sing N N 422 TYR CB HB2 sing N N 423 TYR CB HB3 sing N N 424 TYR CG CD1 doub Y N 425 TYR CG CD2 sing Y N 426 TYR CD1 CE1 sing Y N 427 TYR CD1 HD1 sing N N 428 TYR CD2 CE2 doub Y N 429 TYR CD2 HD2 sing N N 430 TYR CE1 CZ doub Y N 431 TYR CE1 HE1 sing N N 432 TYR CE2 CZ sing Y N 433 TYR CE2 HE2 sing N N 434 TYR CZ OH sing N N 435 TYR OH HH sing N N 436 TYR OXT HXT sing N N 437 VAL N CA sing N N 438 VAL N H sing N N 439 VAL N H2 sing N N 440 VAL CA C sing N N 441 VAL CA CB sing N N 442 VAL CA HA sing N N 443 VAL C O doub N N 444 VAL C OXT sing N N 445 VAL CB CG1 sing N N 446 VAL CB CG2 sing N N 447 VAL CB HB sing N N 448 VAL CG1 HG11 sing N N 449 VAL CG1 HG12 sing N N 450 VAL CG1 HG13 sing N N 451 VAL CG2 HG21 sing N N 452 VAL CG2 HG22 sing N N 453 VAL CG2 HG23 sing N N 454 VAL OXT HXT sing N N 455 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4KNQ 'double helix' 4KNQ 'a-form double helix' 4KNQ 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 2 1_555 A G 20 4_555 -0.057 -0.133 -0.343 4.211 -8.962 -3.717 1 B_C202:G220_B B 202 ? B 220 ? 19 1 1 A G 3 1_555 A C 19 4_555 -0.203 -0.169 0.225 2.069 -17.857 -2.119 2 B_G203:C219_B B 203 ? B 219 ? 19 1 1 A C 4 1_555 A G 18 4_555 0.442 -0.147 0.012 0.774 -13.971 7.304 3 B_C204:G218_B B 204 ? B 218 ? 19 1 1 A C 5 1_555 A C 17 4_555 -1.385 -1.624 0.396 0.078 -21.258 22.489 4 B_C205:C217_B B 205 ? B 217 ? ? ? 1 A G 6 1_555 A C 16 4_555 -0.652 -0.215 0.024 -3.655 -16.989 0.230 5 B_G206:C216_B B 206 ? B 216 ? 19 1 1 A C 7 1_555 A G 15 4_555 0.506 0.020 -0.113 1.502 -16.907 7.678 6 B_C207:G215_B B 207 ? B 215 ? 19 1 1 A G 9 1_555 A C 13 4_555 -0.126 -0.214 0.143 -1.317 -10.801 0.958 7 B_G209:C213_B B 209 ? B 213 ? 19 1 1 A C 10 1_555 A G 12 4_555 0.239 -0.148 0.061 4.047 -9.616 -0.914 8 B_C210:G212_B B 210 ? B 212 ? 19 1 1 A G 12 1_555 A C 10 4_555 -0.239 -0.148 0.061 -4.047 -9.616 -0.914 9 B_G212:C210_B B 212 ? B 210 ? 19 1 1 A C 13 1_555 A G 9 4_555 0.126 -0.214 0.143 1.317 -10.801 0.958 10 B_C213:G209_B B 213 ? B 209 ? 19 1 1 A G 15 1_555 A C 7 4_555 -0.506 0.020 -0.113 -1.502 -16.907 7.678 11 B_G215:C207_B B 215 ? B 207 ? 19 1 1 A C 16 1_555 A G 6 4_555 0.652 -0.215 0.024 3.655 -16.989 0.230 12 B_C216:G206_B B 216 ? B 206 ? 19 1 1 A C 17 1_555 A C 5 4_555 1.385 -1.624 0.396 -0.078 -21.258 22.489 13 B_C217:C205_B B 217 ? B 205 ? ? ? 1 A G 18 1_555 A C 4 4_555 -0.442 -0.147 0.012 -0.774 -13.971 7.304 14 B_G218:C204_B B 218 ? B 204 ? 19 1 1 A C 19 1_555 A G 3 4_555 0.203 -0.169 0.225 -2.069 -17.857 -2.119 15 B_C219:G203_B B 219 ? B 203 ? 19 1 1 A G 20 1_555 A C 2 4_555 0.057 -0.133 -0.343 -4.211 -8.962 -3.717 16 B_G220:C202_B B 220 ? B 202 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 2 1_555 A G 20 4_555 A G 3 1_555 A C 19 4_555 -0.037 -2.092 3.371 -4.909 9.197 29.074 -5.611 -0.826 2.577 17.621 9.405 30.848 1 BB_C202G203:C219G220_BB B 202 ? B 220 ? B 203 ? B 219 ? 1 A G 3 1_555 A C 19 4_555 A C 4 1_555 A G 18 4_555 0.880 -1.734 3.292 3.022 0.633 33.716 -3.082 -1.017 3.324 1.089 -5.196 33.853 2 BB_G203C204:G218C219_BB B 203 ? B 219 ? B 204 ? B 218 ? 1 A C 4 1_555 A G 18 4_555 A C 5 1_555 A C 17 4_555 0.671 -1.519 3.023 -2.006 14.018 19.834 -7.011 -2.079 1.549 35.438 5.071 24.329 3 BB_C204C205:C217G218_BB B 204 ? B 218 ? B 205 ? B 217 ? 1 A C 5 1_555 A C 17 4_555 A G 6 1_555 A C 16 4_555 -0.682 -0.868 3.390 -1.646 9.351 32.627 -2.996 0.903 3.061 16.222 2.856 33.945 4 BB_C205G206:C216C217_BB B 205 ? B 217 ? B 206 ? B 216 ? 1 A G 6 1_555 A C 16 4_555 A C 7 1_555 A G 15 4_555 -0.269 -1.804 3.192 0.902 2.419 35.689 -3.269 0.562 3.060 3.940 -1.469 35.779 5 BB_G206C207:G215C216_BB B 206 ? B 216 ? B 207 ? B 215 ? 1 A C 7 1_555 A G 15 4_555 A G 9 1_555 A C 13 4_555 -0.091 -2.596 6.287 1.158 23.577 58.513 -4.414 0.181 5.015 23.122 -1.136 62.702 6 BB_C207G209:C213G215_BB B 207 ? B 215 ? B 209 ? B 213 ? 1 A G 9 1_555 A C 13 4_555 A C 10 1_555 A G 12 4_555 0.380 -1.502 3.210 1.449 3.089 32.470 -3.188 -0.433 3.072 5.505 -2.582 32.644 7 BB_G209C210:G212C213_BB B 209 ? B 213 ? B 210 ? B 212 ? 1 A C 10 1_555 A G 12 4_555 A G 12 1_555 A C 10 4_555 0.000 -3.770 6.424 0.000 9.502 63.020 -4.357 0.000 5.862 9.036 0.000 63.660 8 BB_C210G212:C210G212_BB B 210 ? B 212 ? B 212 ? B 210 ? 1 A G 12 1_555 A C 10 4_555 A C 13 1_555 A G 9 4_555 -0.380 -1.502 3.210 -1.449 3.089 32.470 -3.188 0.433 3.072 5.505 2.582 32.644 9 BB_G212C213:G209C210_BB B 212 ? B 210 ? B 213 ? B 209 ? 1 A C 13 1_555 A G 9 4_555 A G 15 1_555 A C 7 4_555 0.091 -2.596 6.287 -1.158 23.577 58.513 -4.414 -0.181 5.015 23.122 1.136 62.702 10 BB_C213G215:C207G209_BB B 213 ? B 209 ? B 215 ? B 207 ? 1 A G 15 1_555 A C 7 4_555 A C 16 1_555 A G 6 4_555 0.269 -1.804 3.192 -0.902 2.419 35.689 -3.269 -0.562 3.060 3.940 1.469 35.779 11 BB_G215C216:G206C207_BB B 215 ? B 207 ? B 216 ? B 206 ? 1 A C 16 1_555 A G 6 4_555 A C 17 1_555 A C 5 4_555 0.682 -0.868 3.390 1.646 9.351 32.627 -2.996 -0.903 3.061 16.222 -2.856 33.945 12 BB_C216C217:C205G206_BB B 216 ? B 206 ? B 217 ? B 205 ? 1 A C 17 1_555 A C 5 4_555 A G 18 1_555 A C 4 4_555 -0.671 -1.519 3.023 2.006 14.018 19.834 -7.011 2.079 1.549 35.438 -5.071 24.329 13 BB_C217G218:C204C205_BB B 217 ? B 205 ? B 218 ? B 204 ? 1 A G 18 1_555 A C 4 4_555 A C 19 1_555 A G 3 4_555 -0.880 -1.734 3.292 -3.022 0.633 33.716 -3.082 1.017 3.324 1.089 5.196 33.853 14 BB_G218C219:G203C204_BB B 218 ? B 204 ? B 219 ? B 203 ? 1 A C 19 1_555 A G 3 4_555 A G 20 1_555 A C 2 4_555 0.037 -2.092 3.371 4.909 9.197 29.074 -5.611 0.826 2.577 17.621 -9.405 30.848 15 BB_C219G220:C202G203_BB B 219 ? B 203 ? B 220 ? B 202 ? # _atom_sites.entry_id 4KNQ _atom_sites.fract_transf_matrix[1][1] 0.010963 _atom_sites.fract_transf_matrix[1][2] 0.006329 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012659 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006765 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_