HEADER DNA BINDING PROTEIN 12-MAY-13 4KOO TITLE CRYSTAL STRUCTURE OF WHY1 FROM ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 74-241; COMPND 5 SYNONYM: PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 1, PROTEIN WHIRLY COMPND 6 1, ATWHY1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 STRAIN: COL-0; SOURCE 6 GENE: AT1G14410, F14L17.18, PTAC1, WHY1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS PLANT, WHIRLY, SINGLE-STRANDED DNA BINDING PROTEIN, DNA BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.CAPPADOCIA,J.S.PARENT,N.BRISSON,J.SYGUSCH REVDAT 4 28-FEB-24 4KOO 1 REMARK SEQADV LINK REVDAT 3 15-NOV-17 4KOO 1 REMARK REVDAT 2 27-NOV-13 4KOO 1 JRNL REVDAT 1 13-NOV-13 4KOO 0 JRNL AUTH L.CAPPADOCIA,J.S.PARENT,J.SYGUSCH,N.BRISSON JRNL TITL A FAMILY PORTRAIT: STRUCTURAL COMPARISON OF THE WHIRLY JRNL TITL 2 PROTEINS FROM ARABIDOPSIS THALIANA AND SOLANUM TUBEROSUM. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 69 1207 2013 JRNL REFN ESSN 1744-3091 JRNL PMID 24192350 JRNL DOI 10.1107/S1744309113028698 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 69666 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.2760 - 4.5269 0.99 5063 148 0.1974 0.2162 REMARK 3 2 4.5269 - 3.5950 1.00 4924 146 0.1589 0.2034 REMARK 3 3 3.5950 - 3.1411 1.00 4866 144 0.1639 0.1690 REMARK 3 4 3.1411 - 2.8541 1.00 4872 144 0.1747 0.2289 REMARK 3 5 2.8541 - 2.6497 1.00 4846 143 0.1711 0.2309 REMARK 3 6 2.6497 - 2.4936 1.00 4816 143 0.1745 0.2321 REMARK 3 7 2.4936 - 2.3687 1.00 4833 142 0.1751 0.2179 REMARK 3 8 2.3687 - 2.2657 1.00 4823 143 0.1668 0.2211 REMARK 3 9 2.2657 - 2.1785 1.00 4807 142 0.1693 0.2155 REMARK 3 10 2.1785 - 2.1033 1.00 4779 142 0.1734 0.2017 REMARK 3 11 2.1033 - 2.0376 1.00 4810 141 0.1718 0.2341 REMARK 3 12 2.0376 - 1.9793 1.00 4779 141 0.1880 0.2419 REMARK 3 13 1.9793 - 1.9272 1.00 4794 142 0.2007 0.2132 REMARK 3 14 1.9272 - 1.8800 0.97 4655 138 0.2260 0.2974 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 5611 REMARK 3 ANGLE : 1.363 7609 REMARK 3 CHIRALITY : 0.088 810 REMARK 3 PLANARITY : 0.006 960 REMARK 3 DIHEDRAL : 16.209 2031 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KOO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079601. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0809 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69721 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.30800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% PEG 3350, 0.2M POTASSIUM ACETATE, REMARK 280 0.1M MES PH5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.03450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.03450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.79600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 90.34250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.79600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 90.34250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.03450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.79600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 90.34250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.03450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.79600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 90.34250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -58.03450 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -58.03450 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 73 REMARK 465 ALA A 74 REMARK 465 GLU A 75 REMARK 465 GLY A 76 REMARK 465 MET B 73 REMARK 465 ALA B 74 REMARK 465 GLU B 75 REMARK 465 GLY B 76 REMARK 465 LEU B 77 REMARK 465 ILE B 240 REMARK 465 LYS B 241 REMARK 465 ALA B 242 REMARK 465 ALA B 243 REMARK 465 ALA B 244 REMARK 465 LEU B 245 REMARK 465 GLU B 246 REMARK 465 HIS B 247 REMARK 465 HIS B 248 REMARK 465 HIS B 249 REMARK 465 HIS B 250 REMARK 465 HIS B 251 REMARK 465 HIS B 252 REMARK 465 MET C 73 REMARK 465 ALA C 74 REMARK 465 GLU C 75 REMARK 465 GLY C 76 REMARK 465 LEU C 77 REMARK 465 ALA C 243 REMARK 465 ALA C 244 REMARK 465 LEU C 245 REMARK 465 GLU C 246 REMARK 465 HIS C 247 REMARK 465 HIS C 248 REMARK 465 HIS C 249 REMARK 465 HIS C 250 REMARK 465 HIS C 251 REMARK 465 HIS C 252 REMARK 465 MET D 73 REMARK 465 ALA D 74 REMARK 465 GLU D 75 REMARK 465 GLY D 76 REMARK 465 HIS D 252 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU C 200 O HOH C 523 2.10 REMARK 500 O HOH C 515 O HOH C 520 2.10 REMARK 500 O HOH A 490 O HOH A 575 2.11 REMARK 500 O PHE B 236 O HOH B 574 2.13 REMARK 500 O HOH A 495 O HOH A 581 2.13 REMARK 500 O HOH C 469 O HOH C 490 2.13 REMARK 500 O HOH B 550 O HOH B 574 2.14 REMARK 500 O HOH A 494 O HOH A 572 2.15 REMARK 500 O HOH B 521 O HOH B 538 2.16 REMARK 500 O HOH A 577 O HOH B 409 2.16 REMARK 500 O HIS D 251 O HOH D 526 2.17 REMARK 500 O HOH A 594 O HOH A 596 2.18 REMARK 500 O HOH B 535 O HOH B 542 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 130 50.67 32.74 REMARK 500 ASP A 186 36.44 37.88 REMARK 500 ASP B 186 11.44 59.30 REMARK 500 ARG C 130 18.12 55.13 REMARK 500 ASP C 186 37.51 33.58 REMARK 500 VAL D 129 -73.87 -91.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 303 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 248 NE2 REMARK 620 2 HIS A 250 NE2 91.8 REMARK 620 3 HOH A 551 O 89.7 85.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES D 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KOP RELATED DB: PDB REMARK 900 RELATED ID: 4KOQ RELATED DB: PDB DBREF 4KOO A 74 241 UNP Q9M9S3 WHY1_ARATH 74 241 DBREF 4KOO B 74 241 UNP Q9M9S3 WHY1_ARATH 74 241 DBREF 4KOO C 74 241 UNP Q9M9S3 WHY1_ARATH 74 241 DBREF 4KOO D 74 241 UNP Q9M9S3 WHY1_ARATH 74 241 SEQADV 4KOO MET A 73 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO ALA A 242 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO ALA A 243 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO ALA A 244 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO LEU A 245 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO GLU A 246 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO HIS A 247 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO HIS A 248 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO HIS A 249 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO HIS A 250 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO HIS A 251 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO HIS A 252 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO MET B 73 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO ALA B 242 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO ALA B 243 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO ALA B 244 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO LEU B 245 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO GLU B 246 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO HIS B 247 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO HIS B 248 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO HIS B 249 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO HIS B 250 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO HIS B 251 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO HIS B 252 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO MET C 73 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO ALA C 242 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO ALA C 243 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO ALA C 244 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO LEU C 245 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO GLU C 246 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO HIS C 247 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO HIS C 248 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO HIS C 249 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO HIS C 250 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO HIS C 251 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO HIS C 252 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO MET D 73 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO ALA D 242 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO ALA D 243 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO ALA D 244 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO LEU D 245 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO GLU D 246 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO HIS D 247 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO HIS D 248 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO HIS D 249 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO HIS D 250 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO HIS D 251 UNP Q9M9S3 EXPRESSION TAG SEQADV 4KOO HIS D 252 UNP Q9M9S3 EXPRESSION TAG SEQRES 1 A 180 MET ALA GLU GLY LEU PRO ALA ARG PHE TYR VAL GLY HIS SEQRES 2 A 180 SER ILE TYR LYS GLY LYS ALA ALA LEU THR VAL ASP PRO SEQRES 3 A 180 ARG ALA PRO GLU PHE VAL ALA LEU ASP SER GLY ALA PHE SEQRES 4 A 180 LYS LEU SER LYS ASP GLY PHE LEU LEU LEU GLN PHE ALA SEQRES 5 A 180 PRO SER ALA GLY VAL ARG GLN TYR ASP TRP SER LYS LYS SEQRES 6 A 180 GLN VAL PHE SER LEU SER VAL THR GLU ILE GLY THR LEU SEQRES 7 A 180 VAL SER LEU GLY PRO ARG GLU SER CYS GLU PHE PHE HIS SEQRES 8 A 180 ASP PRO PHE LYS GLY LYS SER ASP GLU GLY LYS VAL ARG SEQRES 9 A 180 LYS VAL LEU LYS VAL GLU PRO LEU PRO ASP GLY SER GLY SEQRES 10 A 180 HIS PHE PHE ASN LEU SER VAL GLN ASN LYS LEU VAL ASN SEQRES 11 A 180 VAL ASP GLU SER ILE TYR ILE PRO ILE THR ARG ALA GLU SEQRES 12 A 180 PHE ALA VAL LEU ILE SER ALA PHE ASN PHE VAL LEU PRO SEQRES 13 A 180 TYR LEU ILE GLY TRP HIS ALA PHE ALA ASN SER ILE LYS SEQRES 14 A 180 ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 180 MET ALA GLU GLY LEU PRO ALA ARG PHE TYR VAL GLY HIS SEQRES 2 B 180 SER ILE TYR LYS GLY LYS ALA ALA LEU THR VAL ASP PRO SEQRES 3 B 180 ARG ALA PRO GLU PHE VAL ALA LEU ASP SER GLY ALA PHE SEQRES 4 B 180 LYS LEU SER LYS ASP GLY PHE LEU LEU LEU GLN PHE ALA SEQRES 5 B 180 PRO SER ALA GLY VAL ARG GLN TYR ASP TRP SER LYS LYS SEQRES 6 B 180 GLN VAL PHE SER LEU SER VAL THR GLU ILE GLY THR LEU SEQRES 7 B 180 VAL SER LEU GLY PRO ARG GLU SER CYS GLU PHE PHE HIS SEQRES 8 B 180 ASP PRO PHE LYS GLY LYS SER ASP GLU GLY LYS VAL ARG SEQRES 9 B 180 LYS VAL LEU LYS VAL GLU PRO LEU PRO ASP GLY SER GLY SEQRES 10 B 180 HIS PHE PHE ASN LEU SER VAL GLN ASN LYS LEU VAL ASN SEQRES 11 B 180 VAL ASP GLU SER ILE TYR ILE PRO ILE THR ARG ALA GLU SEQRES 12 B 180 PHE ALA VAL LEU ILE SER ALA PHE ASN PHE VAL LEU PRO SEQRES 13 B 180 TYR LEU ILE GLY TRP HIS ALA PHE ALA ASN SER ILE LYS SEQRES 14 B 180 ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 180 MET ALA GLU GLY LEU PRO ALA ARG PHE TYR VAL GLY HIS SEQRES 2 C 180 SER ILE TYR LYS GLY LYS ALA ALA LEU THR VAL ASP PRO SEQRES 3 C 180 ARG ALA PRO GLU PHE VAL ALA LEU ASP SER GLY ALA PHE SEQRES 4 C 180 LYS LEU SER LYS ASP GLY PHE LEU LEU LEU GLN PHE ALA SEQRES 5 C 180 PRO SER ALA GLY VAL ARG GLN TYR ASP TRP SER LYS LYS SEQRES 6 C 180 GLN VAL PHE SER LEU SER VAL THR GLU ILE GLY THR LEU SEQRES 7 C 180 VAL SER LEU GLY PRO ARG GLU SER CYS GLU PHE PHE HIS SEQRES 8 C 180 ASP PRO PHE LYS GLY LYS SER ASP GLU GLY LYS VAL ARG SEQRES 9 C 180 LYS VAL LEU LYS VAL GLU PRO LEU PRO ASP GLY SER GLY SEQRES 10 C 180 HIS PHE PHE ASN LEU SER VAL GLN ASN LYS LEU VAL ASN SEQRES 11 C 180 VAL ASP GLU SER ILE TYR ILE PRO ILE THR ARG ALA GLU SEQRES 12 C 180 PHE ALA VAL LEU ILE SER ALA PHE ASN PHE VAL LEU PRO SEQRES 13 C 180 TYR LEU ILE GLY TRP HIS ALA PHE ALA ASN SER ILE LYS SEQRES 14 C 180 ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 D 180 MET ALA GLU GLY LEU PRO ALA ARG PHE TYR VAL GLY HIS SEQRES 2 D 180 SER ILE TYR LYS GLY LYS ALA ALA LEU THR VAL ASP PRO SEQRES 3 D 180 ARG ALA PRO GLU PHE VAL ALA LEU ASP SER GLY ALA PHE SEQRES 4 D 180 LYS LEU SER LYS ASP GLY PHE LEU LEU LEU GLN PHE ALA SEQRES 5 D 180 PRO SER ALA GLY VAL ARG GLN TYR ASP TRP SER LYS LYS SEQRES 6 D 180 GLN VAL PHE SER LEU SER VAL THR GLU ILE GLY THR LEU SEQRES 7 D 180 VAL SER LEU GLY PRO ARG GLU SER CYS GLU PHE PHE HIS SEQRES 8 D 180 ASP PRO PHE LYS GLY LYS SER ASP GLU GLY LYS VAL ARG SEQRES 9 D 180 LYS VAL LEU LYS VAL GLU PRO LEU PRO ASP GLY SER GLY SEQRES 10 D 180 HIS PHE PHE ASN LEU SER VAL GLN ASN LYS LEU VAL ASN SEQRES 11 D 180 VAL ASP GLU SER ILE TYR ILE PRO ILE THR ARG ALA GLU SEQRES 12 D 180 PHE ALA VAL LEU ILE SER ALA PHE ASN PHE VAL LEU PRO SEQRES 13 D 180 TYR LEU ILE GLY TRP HIS ALA PHE ALA ASN SER ILE LYS SEQRES 14 D 180 ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS HET MES A 301 25 HET MES A 302 25 HET NI A 303 1 HET MES B 301 25 HET PO4 B 302 5 HET MES C 301 24 HET MES D 301 24 HET MES D 302 24 HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM NI NICKEL (II) ION HETNAM PO4 PHOSPHATE ION FORMUL 5 MES 6(C6 H13 N O4 S) FORMUL 7 NI NI 2+ FORMUL 9 PO4 O4 P 3- FORMUL 13 HOH *661(H2 O) HELIX 1 1 ASP A 133 LYS A 137 5 5 HELIX 2 2 SER A 143 SER A 152 1 10 HELIX 3 3 THR A 212 ILE A 231 1 20 HELIX 4 4 GLY A 232 ASN A 238 1 7 HELIX 5 5 SER A 239 LEU A 245 1 7 HELIX 6 6 ASP B 133 LYS B 137 5 5 HELIX 7 7 SER B 143 LEU B 153 1 11 HELIX 8 8 THR B 212 ILE B 231 1 20 HELIX 9 9 GLY B 232 PHE B 236 5 5 HELIX 10 10 ASP C 133 LYS C 137 5 5 HELIX 11 11 SER C 143 SER C 152 1 10 HELIX 12 12 THR C 212 ILE C 231 1 20 HELIX 13 13 GLY C 232 PHE C 236 5 5 HELIX 14 14 ASP D 133 LYS D 137 5 5 HELIX 15 15 SER D 143 LEU D 153 1 11 HELIX 16 16 THR D 212 ILE D 231 1 20 HELIX 17 17 GLY D 232 SER D 239 1 8 HELIX 18 18 SER D 239 HIS D 248 1 10 SHEET 1 A 3 PHE A 81 TYR A 82 0 SHEET 2 A 3 PHE B 111 LYS B 115 1 O PHE B 111 N TYR A 82 SHEET 3 A 3 GLU B 102 ALA B 105 -1 N VAL B 104 O LYS B 112 SHEET 1 B 4 HIS A 85 TYR A 88 0 SHEET 2 B 4 ALA A 92 ARG A 99 -1 O VAL A 96 N HIS A 85 SHEET 3 B 4 PHE A 118 PRO A 125 -1 O LEU A 120 N ASP A 97 SHEET 4 B 4 GLN A 138 LEU A 142 -1 O LEU A 142 N LEU A 119 SHEET 1 C 2 GLU A 102 ALA A 105 0 SHEET 2 C 2 PHE A 111 LYS A 115 -1 O SER A 114 N GLU A 102 SHEET 1 D 4 CYS A 159 HIS A 163 0 SHEET 2 D 4 VAL A 175 PRO A 183 -1 O LYS A 177 N HIS A 163 SHEET 3 D 4 HIS A 190 ASN A 198 -1 O GLN A 197 N ARG A 176 SHEET 4 D 4 VAL A 203 ILE A 211 -1 O GLU A 205 N VAL A 196 SHEET 1 E 4 HIS B 85 TYR B 88 0 SHEET 2 E 4 ALA B 92 ARG B 99 -1 O VAL B 96 N HIS B 85 SHEET 3 E 4 PHE B 118 PRO B 125 -1 O LEU B 120 N ASP B 97 SHEET 4 E 4 GLN B 138 LEU B 142 -1 O LEU B 142 N LEU B 119 SHEET 1 F 4 CYS B 159 HIS B 163 0 SHEET 2 F 4 VAL B 175 PRO B 183 -1 O LEU B 179 N PHE B 161 SHEET 3 F 4 HIS B 190 ASN B 198 -1 O PHE B 191 N GLU B 182 SHEET 4 F 4 VAL B 203 ILE B 211 -1 O ILE B 211 N HIS B 190 SHEET 1 G 3 PHE C 81 TYR C 82 0 SHEET 2 G 3 PHE D 111 LYS D 115 1 O LEU D 113 N TYR C 82 SHEET 3 G 3 GLU D 102 ALA D 105 -1 N VAL D 104 O LYS D 112 SHEET 1 H 4 HIS C 85 TYR C 88 0 SHEET 2 H 4 ALA C 92 ARG C 99 -1 O LEU C 94 N ILE C 87 SHEET 3 H 4 PHE C 118 PRO C 125 -1 O PHE C 118 N ARG C 99 SHEET 4 H 4 GLN C 138 LEU C 142 -1 O GLN C 138 N PHE C 123 SHEET 1 I 3 PHE C 111 LYS C 115 0 SHEET 2 I 3 GLU C 102 ALA C 105 -1 N VAL C 104 O LYS C 112 SHEET 3 I 3 HIS D 249 HIS D 250 1 O HIS D 249 N PHE C 103 SHEET 1 J 4 CYS C 159 HIS C 163 0 SHEET 2 J 4 VAL C 175 PRO C 183 -1 O LYS C 177 N HIS C 163 SHEET 3 J 4 HIS C 190 ASN C 198 -1 O ASN C 193 N LYS C 180 SHEET 4 J 4 VAL C 203 ILE C 211 -1 O GLU C 205 N VAL C 196 SHEET 1 K 4 HIS D 85 TYR D 88 0 SHEET 2 K 4 ALA D 92 ARG D 99 -1 O VAL D 96 N HIS D 85 SHEET 3 K 4 PHE D 118 PRO D 125 -1 O GLN D 122 N THR D 95 SHEET 4 K 4 GLN D 138 LEU D 142 -1 O LEU D 142 N LEU D 119 SHEET 1 L 4 CYS D 159 HIS D 163 0 SHEET 2 L 4 VAL D 175 PRO D 183 -1 O LYS D 177 N HIS D 163 SHEET 3 L 4 HIS D 190 ASN D 198 -1 O GLN D 197 N ARG D 176 SHEET 4 L 4 VAL D 203 ILE D 211 -1 O GLU D 205 N VAL D 196 LINK NE2 HIS A 248 NI NI A 303 1555 1555 2.19 LINK NE2 HIS A 250 NI NI A 303 1555 1555 1.79 LINK NI NI A 303 O HOH A 551 1555 1555 2.11 SITE 1 AC1 4 ARG A 130 GLN A 131 TYR A 132 TRP A 134 SITE 1 AC2 9 PHE A 140 SER A 141 HIS A 163 ASP A 164 SITE 2 AC2 9 PRO A 165 LYS A 177 HOH A 432 HOH A 443 SITE 3 AC2 9 HOH A 505 SITE 1 AC3 5 HIS A 248 HIS A 250 HOH A 551 HIS D 248 SITE 2 AC3 5 HIS D 250 SITE 1 AC4 4 ARG B 130 GLN B 131 TYR B 132 TRP B 134 SITE 1 AC5 6 PHE B 140 SER B 141 HIS B 163 PRO B 165 SITE 2 AC5 6 LYS B 177 HOH B 559 SITE 1 AC6 5 PHE C 140 SER C 141 HIS C 163 PRO C 165 SITE 2 AC6 5 LYS C 177 SITE 1 AC7 4 ARG D 130 TYR D 132 TRP D 134 HOH D 491 SITE 1 AC8 8 VAL D 139 PHE D 140 SER D 141 HIS D 163 SITE 2 AC8 8 PRO D 165 LYS D 177 HOH D 437 HOH D 512 CRYST1 81.592 180.685 116.069 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012256 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005534 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008616 0.00000