HEADER ISOMERASE 13-MAY-13 4KPK TITLE CRYSTAL STRUCTURE OF A ENOYL-COA HYDRATASE FROM SHEWANELLA PEALEANA TITLE 2 ATCC 700345 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOYL-COA HYDRATASE/ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA PEALEANA; SOURCE 3 ORGANISM_TAXID: 398579; SOURCE 4 STRAIN: ATCC 700345; SOURCE 5 GENE: SPEA_2799; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS PSI-BIOLOGY, STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NEW KEYWDS 2 YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM, NYSGRC, ALPHA/BETA, KEYWDS 3 ENOYL-COA HYDRATASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.KUMARAN,S.CHAMALA,B.EVANS,R.FOTI,A.GIZZI,B.HILLERICH,A.KAR, AUTHOR 2 J.LAFLEUR,R.SEIDEL,G.VILLIGAS,W.ZENCHECK,N.AL OBAIDI,S.C.ALMO, AUTHOR 3 S.SWAMINATHAN,NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM AUTHOR 4 (NYSGRC) REVDAT 1 22-MAY-13 4KPK 0 JRNL AUTH D.KUMARAN,S.C.ALMO,S.SWAMINATHAN JRNL TITL CRYSTAL STRUCTURE OF A ENOYL-COA HYDRATASE FROM SHEWANELLA JRNL TITL 2 PEALEANA ATCC 700345 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 13926 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 720 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.09 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.14 REMARK 3 REFLECTION IN BIN (WORKING SET) : 746 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE SET COUNT : 39 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2065 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.69000 REMARK 3 B22 (A**2) : -1.69000 REMARK 3 B33 (A**2) : 5.47000 REMARK 3 B12 (A**2) : -1.69000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.233 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.194 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.143 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.400 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2099 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2034 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2830 ; 1.885 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4667 ; 0.889 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 264 ; 6.428 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 102 ;38.567 ;25.098 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 351 ;15.759 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;18.700 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 319 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2412 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 480 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4KPK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAY-13. REMARK 100 THE RCSB ID CODE IS RCSB079633. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI III REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14646 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.24400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, SHELXE, ARP/WARP AND COOT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM ACETATE, 0.1M TRIS 25% PEG REMARK 280 4000 AND 5% ETHYLENE GLYCOL, PH 8.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 53.12700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.67289 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 20.57500 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 53.12700 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 30.67289 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 20.57500 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 53.12700 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 30.67289 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 20.57500 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.34578 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 41.15000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 61.34578 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 41.15000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 61.34578 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 41.15000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 53.12700 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 92.01866 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -53.12700 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 92.01866 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 459 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 465 MSE A 1 REMARK 465 ASN A 2 REMARK 465 ASN A 3 REMARK 465 SER A 4 REMARK 465 VAL A 5 REMARK 465 PRO A 271 REMARK 465 THR A 272 REMARK 465 THR A 273 REMARK 465 THR A 274 REMARK 465 ASP A 275 REMARK 465 PHE A 276 REMARK 465 SER A 277 REMARK 465 ILE A 278 REMARK 465 ALA A 279 REMARK 465 PRO A 280 REMARK 465 GLU A 281 REMARK 465 ASN A 282 REMARK 465 ASN A 283 REMARK 465 ASN A 284 REMARK 465 ASP A 285 REMARK 465 ALA A 286 REMARK 465 SER A 287 REMARK 465 GLY A 288 REMARK 465 GLN A 289 REMARK 465 GLY A 290 REMARK 465 ALA A 291 REMARK 465 LYS A 292 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 30 CG - SE - CE ANGL. DEV. = 22.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 112 31.32 -83.54 REMARK 500 ASP A 235 -167.90 -127.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-028188 RELATED DB: TARGETTRACK DBREF 4KPK A 1 292 UNP A8H6D2 A8H6D2_SHEPA 1 292 SEQADV 4KPK MSE A -21 UNP A8H6D2 EXPRESSION TAG SEQADV 4KPK HIS A -20 UNP A8H6D2 EXPRESSION TAG SEQADV 4KPK HIS A -19 UNP A8H6D2 EXPRESSION TAG SEQADV 4KPK HIS A -18 UNP A8H6D2 EXPRESSION TAG SEQADV 4KPK HIS A -17 UNP A8H6D2 EXPRESSION TAG SEQADV 4KPK HIS A -16 UNP A8H6D2 EXPRESSION TAG SEQADV 4KPK HIS A -15 UNP A8H6D2 EXPRESSION TAG SEQADV 4KPK SER A -14 UNP A8H6D2 EXPRESSION TAG SEQADV 4KPK SER A -13 UNP A8H6D2 EXPRESSION TAG SEQADV 4KPK GLY A -12 UNP A8H6D2 EXPRESSION TAG SEQADV 4KPK VAL A -11 UNP A8H6D2 EXPRESSION TAG SEQADV 4KPK ASP A -10 UNP A8H6D2 EXPRESSION TAG SEQADV 4KPK LEU A -9 UNP A8H6D2 EXPRESSION TAG SEQADV 4KPK GLY A -8 UNP A8H6D2 EXPRESSION TAG SEQADV 4KPK THR A -7 UNP A8H6D2 EXPRESSION TAG SEQADV 4KPK GLU A -6 UNP A8H6D2 EXPRESSION TAG SEQADV 4KPK ASN A -5 UNP A8H6D2 EXPRESSION TAG SEQADV 4KPK LEU A -4 UNP A8H6D2 EXPRESSION TAG SEQADV 4KPK TYR A -3 UNP A8H6D2 EXPRESSION TAG SEQADV 4KPK PHE A -2 UNP A8H6D2 EXPRESSION TAG SEQADV 4KPK GLN A -1 UNP A8H6D2 EXPRESSION TAG SEQADV 4KPK SER A 0 UNP A8H6D2 EXPRESSION TAG SEQRES 1 A 314 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 314 GLY THR GLU ASN LEU TYR PHE GLN SER MSE ASN ASN SER SEQRES 3 A 314 VAL ALA THR GLN THR GLU ILE LEU ASP GLN GLN LEU HIS SEQRES 4 A 314 TYR LEU SER CYS THR LEU ASN GLY GLY VAL ALA GLN MSE SEQRES 5 A 314 VAL LEU ASP ARG SER ASP LYS HIS ASN ALA PHE ASP GLU SEQRES 6 A 314 VAL MSE ILE SER GLU MSE ILE GLN VAL LEU GLU HIS PHE SEQRES 7 A 314 LYS ARG ASN GLU GLN CYS GLN ILE LEU LEU LEU LYS ALA SEQRES 8 A 314 ASN GLY LYS ASN PHE SER ALA GLY ALA ASP LEU ASN TRP SEQRES 9 A 314 MSE ARG LYS GLN ALA LYS MSE ASP PHE GLU GLN ASN LEU SEQRES 10 A 314 ALA ASP ALA ASN GLU LEU ALA ARG LEU MSE SER MSE LEU SEQRES 11 A 314 ASP LYS PHE PRO LYS PRO THR ILE THR LEU VAL GLN GLY SEQRES 12 A 314 ALA ALA PHE GLY GLY ALA LEU GLY LEU ILE CYS CYS SER SEQRES 13 A 314 ASP ILE ALA ILE ALA ASN GLU ARG ALA SER PHE CYS LEU SEQRES 14 A 314 SER GLU VAL LYS LEU GLY LEU ILE PRO ALA VAL ILE SER SEQRES 15 A 314 PRO TYR VAL THR ARG ALA MSE GLY GLN ARG ALA ALA ARG SEQRES 16 A 314 ARG TYR MSE LEU THR ALA GLU ARG PHE ASP ALA GLN LYS SEQRES 17 A 314 ALA LEU GLU LEU GLN ILE ILE HIS ASP ILE ASN ASP ASP SEQRES 18 A 314 LEU ASP ALA ALA ALA GLN PRO PHE ILE ASP ALA LEU LEU SEQRES 19 A 314 SER ASN SER PRO GLN GLY MSE ALA TRP VAL LYS CYS LEU SEQRES 20 A 314 LEU SER SER LEU GLU ASP GLY VAL ILE ASP GLN ASN THR SEQRES 21 A 314 LEU ASP HIS THR SER GLU ARG ILE ALA ARG ILE ARG VAL SEQRES 22 A 314 SER GLU GLU GLY GLN GLU GLY LEU ASN ALA PHE PHE GLU SEQRES 23 A 314 LYS ARG SER PRO GLN TRP PRO THR THR THR ASP PHE SER SEQRES 24 A 314 ILE ALA PRO GLU ASN ASN ASN ASP ALA SER GLY GLN GLY SEQRES 25 A 314 ALA LYS MODRES 4KPK MSE A 30 MET SELENOMETHIONINE MODRES 4KPK MSE A 45 MET SELENOMETHIONINE MODRES 4KPK MSE A 49 MET SELENOMETHIONINE MODRES 4KPK MSE A 83 MET SELENOMETHIONINE MODRES 4KPK MSE A 89 MET SELENOMETHIONINE MODRES 4KPK MSE A 105 MET SELENOMETHIONINE MODRES 4KPK MSE A 107 MET SELENOMETHIONINE MODRES 4KPK MSE A 167 MET SELENOMETHIONINE MODRES 4KPK MSE A 176 MET SELENOMETHIONINE MODRES 4KPK MSE A 219 MET SELENOMETHIONINE HET MSE A 30 8 HET MSE A 45 8 HET MSE A 49 8 HET MSE A 83 8 HET MSE A 89 8 HET MSE A 105 8 HET MSE A 107 8 HET MSE A 167 8 HET MSE A 176 8 HET MSE A 219 8 HET EDO A 301 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 EDO C2 H6 O2 FORMUL 3 HOH *100(H2 O) HELIX 1 1 THR A 7 LEU A 16 1 10 HELIX 2 2 ARG A 34 HIS A 38 5 5 HELIX 3 3 ASP A 42 ASN A 59 1 18 HELIX 4 4 ASP A 79 LYS A 88 1 10 HELIX 5 5 ASP A 90 PHE A 111 1 22 HELIX 6 6 GLY A 125 SER A 134 1 10 HELIX 7 7 SER A 148 GLY A 153 5 6 HELIX 8 8 ILE A 159 GLY A 168 1 10 HELIX 9 9 GLY A 168 ALA A 179 1 12 HELIX 10 10 ASP A 183 LEU A 190 1 8 HELIX 11 11 ASP A 199 ASN A 214 1 16 HELIX 12 12 SER A 215 GLU A 230 1 16 HELIX 13 13 ASP A 235 SER A 252 1 18 HELIX 14 14 SER A 252 GLU A 264 1 13 SHEET 1 A 6 LEU A 19 ASN A 24 0 SHEET 2 A 6 VAL A 27 LEU A 32 -1 O VAL A 31 N SER A 20 SHEET 3 A 6 ILE A 64 ALA A 69 1 O LEU A 66 N ALA A 28 SHEET 4 A 6 THR A 115 VAL A 119 1 O ILE A 116 N LEU A 67 SHEET 5 A 6 ILE A 136 ALA A 139 1 O ILE A 138 N VAL A 119 SHEET 6 A 6 ASP A 195 ILE A 196 1 O ASP A 195 N ALA A 139 SHEET 1 B 2 PHE A 145 CYS A 146 0 SHEET 2 B 2 ARG A 181 PHE A 182 -1 O PHE A 182 N PHE A 145 LINK C GLN A 29 N MSE A 30 1555 1555 1.33 LINK C MSE A 30 N VAL A 31 1555 1555 1.34 LINK C VAL A 44 N MSE A 45 1555 1555 1.34 LINK C MSE A 45 N ILE A 46 1555 1555 1.32 LINK C GLU A 48 N MSE A 49 1555 1555 1.32 LINK C MSE A 49 N ILE A 50 1555 1555 1.35 LINK C TRP A 82 N MSE A 83 1555 1555 1.32 LINK C MSE A 83 N ARG A 84 1555 1555 1.33 LINK C LYS A 88 N MSE A 89 1555 1555 1.33 LINK C MSE A 89 N ASP A 90 1555 1555 1.34 LINK C LEU A 104 N MSE A 105 1555 1555 1.31 LINK C MSE A 105 N SER A 106 1555 1555 1.34 LINK C SER A 106 N MSE A 107 1555 1555 1.33 LINK C MSE A 107 N LEU A 108 1555 1555 1.31 LINK C ALA A 166 N MSE A 167 1555 1555 1.32 LINK C MSE A 167 N GLY A 168 1555 1555 1.34 LINK C TYR A 175 N MSE A 176 1555 1555 1.34 LINK C MSE A 176 N LEU A 177 1555 1555 1.34 LINK C GLY A 218 N MSE A 219 1555 1555 1.32 LINK C MSE A 219 N ALA A 220 1555 1555 1.32 SITE 1 AC1 5 ASP A 13 LEU A 16 LEU A 19 SER A 20 SITE 2 AC1 5 ASP A 33 CRYST1 106.254 106.254 61.725 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009411 0.005434 0.000000 0.00000 SCALE2 0.000000 0.010867 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016201 0.00000