HEADER TRANSFERASE 14-MAY-13 4KPW TITLE CRYSTAL STRUCTURE OF HIS-TAGGED HUMAN THYMIDYLATE SYNTHASE R175A TITLE 2 MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TS, TSASE; COMPND 5 EC: 2.1.1.45; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TYMS, TS, OK/SW-CL.29; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INTERFACE HOT SPOT, TRANSFERASE, METHYLTRANSFERASE, NUCLEOTIDE KEYWDS 2 BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR C.POZZI,S.MANGANI REVDAT 4 20-SEP-23 4KPW 1 REMARK SEQADV LINK REVDAT 3 15-NOV-17 4KPW 1 REMARK REVDAT 2 06-MAY-15 4KPW 1 JRNL REVDAT 1 14-MAY-14 4KPW 0 JRNL AUTH O.M.SALO-AHEN,A.TOCHOWICZ,C.POZZI,D.CARDINALE,S.FERRARI, JRNL AUTH 2 Y.BOUM,S.MANGANI,R.M.STROUD,P.SAXENA,H.MYLLYKALLIO, JRNL AUTH 3 M.P.COSTI,G.PONTERINI,R.C.WADE JRNL TITL HOTSPOTS IN AN OBLIGATE HOMODIMERIC ANTICANCER TARGET. JRNL TITL 2 STRUCTURAL AND FUNCTIONAL EFFECTS OF INTERFACIAL MUTATIONS JRNL TITL 3 IN HUMAN THYMIDYLATE SYNTHASE. JRNL REF J.MED.CHEM. V. 58 3572 2015 JRNL REFN ISSN 0022-2623 JRNL PMID 25798950 JRNL DOI 10.1021/ACS.JMEDCHEM.5B00137 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 29020 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1475 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.2452 - 4.5123 0.99 2642 118 0.1564 0.1940 REMARK 3 2 4.5123 - 3.5825 1.00 2532 141 0.1356 0.1866 REMARK 3 3 3.5825 - 3.1299 1.00 2517 131 0.1629 0.2077 REMARK 3 4 3.1299 - 2.8438 1.00 2513 131 0.1721 0.2083 REMARK 3 5 2.8438 - 2.6401 1.00 2493 130 0.1624 0.2008 REMARK 3 6 2.6401 - 2.4845 1.00 2484 123 0.1642 0.1817 REMARK 3 7 2.4845 - 2.3601 1.00 2454 158 0.1671 0.2171 REMARK 3 8 2.3601 - 2.2573 1.00 2497 122 0.1783 0.2515 REMARK 3 9 2.2573 - 2.1704 1.00 2494 127 0.1824 0.2212 REMARK 3 10 2.1704 - 2.0956 1.00 2417 164 0.1949 0.2333 REMARK 3 11 2.0956 - 2.0300 1.00 2502 130 0.2290 0.2974 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2215 REMARK 3 ANGLE : 1.081 2989 REMARK 3 CHIRALITY : 0.078 314 REMARK 3 PLANARITY : 0.005 383 REMARK 3 DIHEDRAL : 14.421 821 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESSEQ 38:58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.0712 -17.6892 -19.3018 REMARK 3 T TENSOR REMARK 3 T11: 0.4924 T22: 0.1851 REMARK 3 T33: 0.4094 T12: -0.1237 REMARK 3 T13: -0.0720 T23: -0.0390 REMARK 3 L TENSOR REMARK 3 L11: 6.1964 L22: 2.6919 REMARK 3 L33: 9.2948 L12: -3.1920 REMARK 3 L13: -2.7205 L23: 1.6019 REMARK 3 S TENSOR REMARK 3 S11: 0.0250 S12: 0.6381 S13: -0.5422 REMARK 3 S21: -0.4325 S22: 0.0257 S23: -0.0954 REMARK 3 S31: 0.7897 S32: -0.0073 S33: -0.0295 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESSEQ 59:93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.6251 -8.7114 1.9468 REMARK 3 T TENSOR REMARK 3 T11: 0.3993 T22: 0.1779 REMARK 3 T33: 0.2383 T12: -0.0803 REMARK 3 T13: -0.0403 T23: 0.0555 REMARK 3 L TENSOR REMARK 3 L11: 2.6067 L22: 3.3867 REMARK 3 L33: 1.8439 L12: 0.4987 REMARK 3 L13: 0.2166 L23: 0.3808 REMARK 3 S TENSOR REMARK 3 S11: 0.2804 S12: -0.4895 S13: -0.3063 REMARK 3 S21: 0.6784 S22: -0.0531 S23: -0.1393 REMARK 3 S31: 0.1238 S32: -0.0584 S33: -0.1986 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESSEQ 94:107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.5572 -17.9099 6.8536 REMARK 3 T TENSOR REMARK 3 T11: 1.4012 T22: 0.9721 REMARK 3 T33: 1.2973 T12: -0.0002 REMARK 3 T13: -0.0993 T23: 0.2992 REMARK 3 L TENSOR REMARK 3 L11: 9.7893 L22: 2.5307 REMARK 3 L33: 7.5667 L12: -3.8279 REMARK 3 L13: -0.9650 L23: 3.1493 REMARK 3 S TENSOR REMARK 3 S11: -0.0706 S12: -1.5528 S13: -2.5460 REMARK 3 S21: 0.4484 S22: -0.0696 S23: 1.0804 REMARK 3 S31: 1.5723 S32: 0.3994 S33: 0.2191 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESSEQ 108:148 ) REMARK 3 ORIGIN FOR THE GROUP (A): 64.8800 -9.8934 -2.3212 REMARK 3 T TENSOR REMARK 3 T11: 0.7247 T22: 0.6909 REMARK 3 T33: 0.8433 T12: 0.1671 REMARK 3 T13: -0.0667 T23: 0.0438 REMARK 3 L TENSOR REMARK 3 L11: 3.3763 L22: 3.1957 REMARK 3 L33: 7.4495 L12: -0.0908 REMARK 3 L13: 0.3467 L23: -4.8546 REMARK 3 S TENSOR REMARK 3 S11: 0.3666 S12: 0.3713 S13: -0.7521 REMARK 3 S21: -1.3385 S22: -0.4182 S23: -1.1100 REMARK 3 S31: 1.4752 S32: 1.3984 S33: 0.1492 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESSEQ 149:191 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.3406 -0.5170 -3.7731 REMARK 3 T TENSOR REMARK 3 T11: 0.4207 T22: 0.3032 REMARK 3 T33: 0.3354 T12: -0.0885 REMARK 3 T13: -0.1145 T23: 0.0328 REMARK 3 L TENSOR REMARK 3 L11: 4.3142 L22: 4.2088 REMARK 3 L33: 5.0376 L12: -0.8918 REMARK 3 L13: -0.3802 L23: 1.9733 REMARK 3 S TENSOR REMARK 3 S11: 0.4699 S12: -0.0540 S13: -0.0007 REMARK 3 S21: 0.4974 S22: -0.2125 S23: -1.0075 REMARK 3 S31: 0.2601 S32: 0.6261 S33: -0.2213 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESSEQ 192:210 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.2321 2.7748 -5.5364 REMARK 3 T TENSOR REMARK 3 T11: 0.3686 T22: 0.1804 REMARK 3 T33: 0.2221 T12: -0.0357 REMARK 3 T13: -0.0207 T23: -0.0445 REMARK 3 L TENSOR REMARK 3 L11: 3.8945 L22: 9.1991 REMARK 3 L33: 9.1810 L12: -4.9988 REMARK 3 L13: -4.9145 L23: 6.2822 REMARK 3 S TENSOR REMARK 3 S11: 0.1058 S12: -0.3757 S13: -0.0985 REMARK 3 S21: 0.1270 S22: 0.0365 S23: -0.0817 REMARK 3 S31: -0.1435 S32: 0.4170 S33: -0.0153 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN A AND RESSEQ 211:291 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.0600 -7.7930 -0.3140 REMARK 3 T TENSOR REMARK 3 T11: 0.3615 T22: 0.1829 REMARK 3 T33: 0.1946 T12: -0.0657 REMARK 3 T13: -0.0015 T23: 0.0648 REMARK 3 L TENSOR REMARK 3 L11: 2.0450 L22: 3.3465 REMARK 3 L33: 1.5529 L12: 0.6395 REMARK 3 L13: -0.2122 L23: -0.1186 REMARK 3 S TENSOR REMARK 3 S11: 0.2388 S12: -0.3210 S13: -0.2015 REMARK 3 S21: 0.3717 S22: -0.1382 S23: 0.0103 REMARK 3 S31: 0.0623 S32: -0.0952 S33: -0.0880 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN A AND RESSEQ 292:323 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.5532 -15.2660 7.5993 REMARK 3 T TENSOR REMARK 3 T11: 0.5241 T22: 0.3342 REMARK 3 T33: 0.3201 T12: -0.1483 REMARK 3 T13: 0.0434 T23: 0.1466 REMARK 3 L TENSOR REMARK 3 L11: 4.6397 L22: 3.1687 REMARK 3 L33: 2.6232 L12: 1.1771 REMARK 3 L13: 0.7590 L23: -0.8681 REMARK 3 S TENSOR REMARK 3 S11: 0.2521 S12: -0.6450 S13: -0.3941 REMARK 3 S21: 0.5893 S22: -0.1661 S23: 0.0563 REMARK 3 S31: -0.1461 S32: 0.0249 S33: -0.1017 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KPW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079645. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.8 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8736 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29020 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 37.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.900 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.39600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3N5G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 % SATURATED AMMONIUM SULFATE, 20 MM REMARK 280 BETA-MERCAPTOETHANOL, AND 0.1 M TRIS-HCL, PH 8.8, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.56333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.12667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 55.12667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.56333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -27.56333 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 ARG A -10 REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 VAL A 3 REMARK 465 ALA A 4 REMARK 465 GLY A 5 REMARK 465 SER A 6 REMARK 465 GLU A 7 REMARK 465 LEU A 8 REMARK 465 PRO A 9 REMARK 465 ARG A 10 REMARK 465 ARG A 11 REMARK 465 PRO A 12 REMARK 465 LEU A 13 REMARK 465 PRO A 14 REMARK 465 PRO A 15 REMARK 465 ALA A 16 REMARK 465 ALA A 17 REMARK 465 GLN A 18 REMARK 465 GLU A 19 REMARK 465 ARG A 20 REMARK 465 ASP A 21 REMARK 465 ALA A 22 REMARK 465 GLU A 23 REMARK 465 PRO A 24 REMARK 465 ARG A 25 REMARK 465 LYS A 107 REMARK 465 ILE A 108 REMARK 465 TRP A 109 REMARK 465 ASP A 110 REMARK 465 ALA A 111 REMARK 465 ASN A 112 REMARK 465 GLY A 113 REMARK 465 SER A 114 REMARK 465 ARG A 115 REMARK 465 ASP A 116 REMARK 465 PHE A 117 REMARK 465 LEU A 118 REMARK 465 ASP A 119 REMARK 465 SER A 120 REMARK 465 LEU A 121 REMARK 465 GLY A 122 REMARK 465 PHE A 123 REMARK 465 SER A 124 REMARK 465 THR A 125 REMARK 465 ARG A 126 REMARK 465 GLU A 127 REMARK 465 ALA A 312 REMARK 465 VAL A 313 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 99 CG CD CE NZ REMARK 470 GLU A 128 CG CD OE1 OE2 REMARK 470 MET A 311 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 134 -178.08 -68.39 REMARK 500 ARG A 147 -92.37 -112.50 REMARK 500 ASN A 171 82.17 -161.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3N5E RELATED DB: PDB REMARK 900 RELATED ID: 3N5G RELATED DB: PDB DBREF 4KPW A 1 313 UNP P04818 TYSY_HUMAN 1 313 SEQADV 4KPW MET A -11 UNP P04818 INITIATING METHIONINE SEQADV 4KPW ARG A -10 UNP P04818 EXPRESSION TAG SEQADV 4KPW GLY A -9 UNP P04818 EXPRESSION TAG SEQADV 4KPW SER A -8 UNP P04818 EXPRESSION TAG SEQADV 4KPW HIS A -7 UNP P04818 EXPRESSION TAG SEQADV 4KPW HIS A -6 UNP P04818 EXPRESSION TAG SEQADV 4KPW HIS A -5 UNP P04818 EXPRESSION TAG SEQADV 4KPW HIS A -4 UNP P04818 EXPRESSION TAG SEQADV 4KPW HIS A -3 UNP P04818 EXPRESSION TAG SEQADV 4KPW HIS A -2 UNP P04818 EXPRESSION TAG SEQADV 4KPW GLY A -1 UNP P04818 EXPRESSION TAG SEQADV 4KPW SER A 0 UNP P04818 EXPRESSION TAG SEQADV 4KPW ALA A 175 UNP P04818 ARG 175 ENGINEERED MUTATION SEQRES 1 A 325 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 A 325 PRO VAL ALA GLY SER GLU LEU PRO ARG ARG PRO LEU PRO SEQRES 3 A 325 PRO ALA ALA GLN GLU ARG ASP ALA GLU PRO ARG PRO PRO SEQRES 4 A 325 HIS GLY GLU LEU GLN TYR LEU GLY GLN ILE GLN HIS ILE SEQRES 5 A 325 LEU ARG SCH GLY VAL ARG LYS ASP ASP ARG THR GLY THR SEQRES 6 A 325 GLY THR LEU SER VAL PHE GLY MET GLN ALA ARG TYR SER SEQRES 7 A 325 LEU ARG ASP GLU PHE PRO LEU LEU THR THR LYS ARG VAL SEQRES 8 A 325 PHE TRP LYS GLY VAL LEU GLU GLU LEU LEU TRP PHE ILE SEQRES 9 A 325 LYS GLY SER THR ASN ALA LYS GLU LEU SER SER LYS GLY SEQRES 10 A 325 VAL LYS ILE TRP ASP ALA ASN GLY SER ARG ASP PHE LEU SEQRES 11 A 325 ASP SER LEU GLY PHE SER THR ARG GLU GLU GLY ASP LEU SEQRES 12 A 325 GLY PRO VAL TYR GLY PHE GLN TRP ARG HIS PHE GLY ALA SEQRES 13 A 325 GLU TYR ARG ASP MET GLU SER ASP TYR SER GLY GLN GLY SEQRES 14 A 325 VAL ASP GLN LEU GLN ARG VAL ILE ASP THR ILE LYS THR SEQRES 15 A 325 ASN PRO ASP ASP ALA ARG ILE ILE MET CME ALA TRP ASN SEQRES 16 A 325 PRO ARG ASP LEU PRO LEU MET ALA LEU PRO PRO CME HIS SEQRES 17 A 325 ALA LEU CME GLN PHE TYR VAL VAL ASN SER GLU LEU SER SEQRES 18 A 325 CYS GLN LEU TYR GLN ARG SER GLY ASP MET GLY LEU GLY SEQRES 19 A 325 VAL PRO PHE ASN ILE ALA SER TYR ALA LEU LEU THR TYR SEQRES 20 A 325 MET ILE ALA HIS ILE THR GLY LEU LYS PRO GLY ASP PHE SEQRES 21 A 325 ILE HIS THR LEU GLY ASP ALA HIS ILE TYR LEU ASN HIS SEQRES 22 A 325 ILE GLU PRO LEU LYS ILE GLN LEU GLN ARG GLU PRO ARG SEQRES 23 A 325 PRO PHE PRO LYS LEU ARG ILE LEU ARG LYS VAL GLU LYS SEQRES 24 A 325 ILE ASP ASP PHE LYS ALA GLU ASP PHE GLN ILE GLU GLY SEQRES 25 A 325 TYR ASN PRO HIS PRO THR ILE LYS MET GLU MET ALA VAL MODRES 4KPW SCH A 43 CYS S-METHYL-THIO-CYSTEINE MODRES 4KPW CME A 180 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE MODRES 4KPW CME A 195 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE MODRES 4KPW CME A 199 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE HET SCH A 43 8 HET CME A 180 10 HET CME A 195 10 HET CME A 199 10 HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HETNAM SCH S-METHYL-THIO-CYSTEINE HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 SCH C4 H9 N O2 S2 FORMUL 1 CME 3(C5 H11 N O3 S2) FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 EDO 3(C2 H6 O2) FORMUL 8 HOH *164(H2 O) HELIX 1 1 GLY A 29 GLY A 44 1 16 HELIX 2 2 PHE A 80 LYS A 93 1 14 HELIX 3 3 ALA A 98 SER A 103 1 6 HELIX 4 4 VAL A 134 PHE A 142 1 9 HELIX 5 5 ASP A 159 ASN A 171 1 13 HELIX 6 6 ASN A 183 LEU A 187 5 5 HELIX 7 7 LEU A 221 GLY A 242 1 22 HELIX 8 8 HIS A 261 LEU A 269 1 9 HELIX 9 9 LYS A 287 PHE A 291 5 5 HELIX 10 10 LYS A 292 GLU A 294 5 3 SHEET 1 A 6 VAL A 45 ASP A 48 0 SHEET 2 A 6 GLY A 54 SER A 66 -1 O SER A 57 N VAL A 45 SHEET 3 A 6 LYS A 244 TYR A 258 -1 O PHE A 248 N TYR A 65 SHEET 4 A 6 GLU A 207 ASP A 218 1 N LEU A 208 O GLY A 246 SHEET 5 A 6 ALA A 197 VAL A 204 -1 N TYR A 202 O SER A 209 SHEET 6 A 6 ILE A 178 ALA A 181 -1 N MET A 179 O CME A 199 SHEET 1 B 2 LYS A 278 ILE A 281 0 SHEET 2 B 2 PHE A 296 GLU A 299 -1 O GLN A 297 N ARG A 280 LINK C ARG A 42 N SCH A 43 1555 1555 1.33 LINK C SCH A 43 N GLY A 44 1555 1555 1.33 LINK C MET A 179 N CME A 180 1555 1555 1.33 LINK C CME A 180 N ALA A 181 1555 1555 1.33 LINK C PRO A 194 N CME A 195 1555 1555 1.33 LINK C CME A 195 N HIS A 196 1555 1555 1.33 LINK C LEU A 198 N CME A 199 1555 1555 1.33 LINK C CME A 199 N GLN A 200 1555 1555 1.33 SITE 1 AC1 7 ARG A 50 ARG A 78 ARG A 176 ARG A 185 SITE 2 AC1 7 PRO A 305 THR A 306 HOH A 607 SITE 1 AC2 4 ASN A 183 HIS A 196 ARG A 215 SER A 216 SITE 1 AC3 6 GLU A 272 ARG A 274 HIS A 304 HOH A 550 SITE 2 AC3 6 HOH A 583 HOH A 609 SITE 1 AC4 6 GLY A 29 ARG A 64 TYR A 65 SER A 66 SITE 2 AC4 6 GLU A 70 PHE A 276 SITE 1 AC5 7 GLN A 36 GLN A 62 ALA A 63 VAL A 223 SITE 2 AC5 7 HIS A 250 LEU A 252 HOH A 502 SITE 1 AC6 5 GLY A 217 ASP A 218 GLY A 222 ASN A 226 SITE 2 AC6 5 HOH A 524 CRYST1 96.320 96.320 82.690 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010382 0.005994 0.000000 0.00000 SCALE2 0.000000 0.011988 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012093 0.00000