HEADER DNA BINDING PROTEIN/DNA 14-MAY-13 4KPY TITLE DNA BINDING PROTEIN AND DNA COMPLEX STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'- COMPND 7 D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*TP*AP*GP*T)- COMPND 8 3'); COMPND 9 CHAIN: C, E; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(P*TP*AP*CP*TP*AP*CP*CP*TP*CP*G)-3'); COMPND 13 CHAIN: D, F; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*CP*C)-3'); COMPND 17 CHAIN: M, N; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 262724; SOURCE 4 STRAIN: HB27; SOURCE 5 GENE: TT_P0026; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-SUMO; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630; SOURCE 19 MOL_ID: 4; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 22 ORGANISM_TAXID: 32630 KEYWDS ARGONAUTE, RNA INTERFERENCE, DNA INTERFERENCE, DNA BINDING PROTEIN- KEYWDS 2 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.SHENG,H.ZHAO,J.WANG,Y.RAO,Y.WANG REVDAT 5 29-MAY-24 4KPY 1 COMPND REMARK HET HETNAM REVDAT 5 2 1 FORMUL ATOM REVDAT 4 20-MAR-24 4KPY 1 REMARK LINK REVDAT 3 20-NOV-19 4KPY 1 SOURCE REMARK REVDAT 2 15-NOV-17 4KPY 1 REMARK REVDAT 1 29-JAN-14 4KPY 0 JRNL AUTH G.SHENG,H.ZHAO,J.WANG,Y.RAO,W.TIAN,D.C.SWARTS, JRNL AUTH 2 J.VAN DER OOST,D.J.PATEL,Y.WANG JRNL TITL STRUCTURE-BASED CLEAVAGE MECHANISM OF THERMUS THERMOPHILUS JRNL TITL 2 ARGONAUTE DNA GUIDE STRAND-MEDIATED DNA TARGET CLEAVAGE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 652 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 24374628 JRNL DOI 10.1073/PNAS.1321032111 REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 80659 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 4028 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3217 - 7.3832 0.99 2895 157 0.1668 0.1703 REMARK 3 2 7.3832 - 5.8636 1.00 2811 148 0.1841 0.2473 REMARK 3 3 5.8636 - 5.1233 1.00 2782 146 0.1744 0.2035 REMARK 3 4 5.1233 - 4.6553 1.00 2732 157 0.1443 0.2087 REMARK 3 5 4.6553 - 4.3218 1.00 2766 138 0.1369 0.1680 REMARK 3 6 4.3218 - 4.0672 1.00 2725 153 0.1432 0.1685 REMARK 3 7 4.0672 - 3.8636 0.74 2010 110 0.1607 0.2321 REMARK 3 8 3.8636 - 3.6955 0.99 2699 119 0.1711 0.2214 REMARK 3 9 3.6955 - 3.5532 0.67 1824 108 0.1823 0.2269 REMARK 3 10 3.5532 - 3.4307 0.98 2653 147 0.2167 0.2455 REMARK 3 11 3.4307 - 3.3234 0.99 2667 142 0.1795 0.2081 REMARK 3 12 3.3234 - 3.2284 1.00 2722 142 0.1820 0.2122 REMARK 3 13 3.2284 - 3.1435 1.00 2701 144 0.1917 0.2280 REMARK 3 14 3.1435 - 3.0668 1.00 2744 117 0.1954 0.2455 REMARK 3 15 3.0668 - 2.9971 1.00 2695 142 0.2061 0.2722 REMARK 3 16 2.9971 - 2.9333 1.00 2686 134 0.2082 0.2468 REMARK 3 17 2.9333 - 2.8746 1.00 2696 163 0.2093 0.2666 REMARK 3 18 2.8746 - 2.8204 1.00 2684 141 0.2130 0.2741 REMARK 3 19 2.8204 - 2.7700 1.00 2695 153 0.2199 0.2759 REMARK 3 20 2.7700 - 2.7231 1.00 2674 144 0.2181 0.3021 REMARK 3 21 2.7231 - 2.6792 0.99 2698 135 0.2843 0.3687 REMARK 3 22 2.6792 - 2.6379 0.99 2684 125 0.3708 0.4738 REMARK 3 23 2.6379 - 2.5991 1.00 2689 140 0.2549 0.2978 REMARK 3 24 2.5991 - 2.5625 1.00 2690 138 0.2643 0.3564 REMARK 3 25 2.5625 - 2.5279 1.00 2694 150 0.2972 0.3988 REMARK 3 26 2.5279 - 2.4951 0.98 2599 145 0.3541 0.4326 REMARK 3 27 2.4951 - 2.4639 1.00 2676 140 0.2779 0.3498 REMARK 3 28 2.4639 - 2.4342 1.00 2694 132 0.2546 0.3292 REMARK 3 29 2.4342 - 2.4059 0.87 2346 118 0.2571 0.2874 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 12349 REMARK 3 ANGLE : 1.102 17084 REMARK 3 CHIRALITY : 0.045 1870 REMARK 3 PLANARITY : 0.005 1984 REMARK 3 DIHEDRAL : 17.973 4667 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 1:122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.1183 -28.5658 44.5488 REMARK 3 T TENSOR REMARK 3 T11: 0.5787 T22: 0.7115 REMARK 3 T33: 0.4804 T12: 0.2204 REMARK 3 T13: -0.0024 T23: 0.0629 REMARK 3 L TENSOR REMARK 3 L11: 2.0751 L22: 0.7857 REMARK 3 L33: 1.0895 L12: 0.1296 REMARK 3 L13: -0.2785 L23: 0.0016 REMARK 3 S TENSOR REMARK 3 S11: 0.3124 S12: 0.9961 S13: 0.0910 REMARK 3 S21: -0.4721 S22: -0.3377 S23: -0.3210 REMARK 3 S31: -0.4346 S32: -0.1766 S33: 0.0486 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 123:300 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.8947 -42.3149 38.1322 REMARK 3 T TENSOR REMARK 3 T11: 0.6003 T22: 0.4682 REMARK 3 T33: 0.4545 T12: 0.0612 REMARK 3 T13: 0.0715 T23: -0.1056 REMARK 3 L TENSOR REMARK 3 L11: 0.3795 L22: 1.2066 REMARK 3 L33: 2.5963 L12: -0.0098 REMARK 3 L13: -0.7773 L23: 1.1288 REMARK 3 S TENSOR REMARK 3 S11: -0.1536 S12: 0.2558 S13: -0.2057 REMARK 3 S21: 0.3425 S22: -0.1060 S23: 0.0287 REMARK 3 S31: 0.7922 S32: -0.4022 S33: 0.2334 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 301:685 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.7132 -9.5697 40.1209 REMARK 3 T TENSOR REMARK 3 T11: 0.1938 T22: 0.1815 REMARK 3 T33: 0.2165 T12: 0.0116 REMARK 3 T13: -0.0085 T23: -0.0381 REMARK 3 L TENSOR REMARK 3 L11: 1.0607 L22: 0.5283 REMARK 3 L33: 1.6248 L12: -0.1013 REMARK 3 L13: 0.5469 L23: -0.0501 REMARK 3 S TENSOR REMARK 3 S11: -0.0933 S12: -0.0793 S13: 0.0828 REMARK 3 S21: 0.0655 S22: -0.0019 S23: 0.0074 REMARK 3 S31: -0.0375 S32: 0.0156 S33: 0.1020 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND (RESID 3:282 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7483 -25.7327 -1.1616 REMARK 3 T TENSOR REMARK 3 T11: 0.3428 T22: 0.4878 REMARK 3 T33: 0.3431 T12: 0.0538 REMARK 3 T13: -0.0294 T23: 0.0390 REMARK 3 L TENSOR REMARK 3 L11: 0.9303 L22: 2.1426 REMARK 3 L33: 1.0901 L12: -0.5971 REMARK 3 L13: -0.0543 L23: -0.5110 REMARK 3 S TENSOR REMARK 3 S11: -0.0795 S12: -0.1609 S13: 0.0940 REMARK 3 S21: 0.3635 S22: -0.1418 S23: -0.3195 REMARK 3 S31: -0.2431 S32: 0.1690 S33: 0.1956 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESID 283:685 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.4773 -2.4229 0.6628 REMARK 3 T TENSOR REMARK 3 T11: 0.2242 T22: 0.2183 REMARK 3 T33: 0.2576 T12: 0.0152 REMARK 3 T13: -0.0246 T23: 0.0459 REMARK 3 L TENSOR REMARK 3 L11: 0.4219 L22: 0.8638 REMARK 3 L33: 1.2374 L12: -0.0868 REMARK 3 L13: 0.0164 L23: 0.3048 REMARK 3 S TENSOR REMARK 3 S11: 0.0024 S12: 0.0536 S13: 0.1228 REMARK 3 S21: -0.1115 S22: -0.0605 S23: -0.0668 REMARK 3 S31: -0.0019 S32: 0.1023 S33: 0.0607 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KPY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079647. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82290 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.6M NAAC, 0.1M BIS-TRIS PROPANE PH REMARK 280 7.0, HANGING DROP, TEMPERATURE 306K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 55.66450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.43650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.18100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.43650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 55.66450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.18100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, N REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 248 REMARK 465 ASP A 249 REMARK 465 PRO A 250 REMARK 465 ARG A 251 REMARK 465 HIS A 271 REMARK 465 GLU A 272 REMARK 465 GLU A 273 REMARK 465 GLU A 274 REMARK 465 GLY A 275 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 LEU B 217 REMARK 465 PRO B 218 REMARK 465 LYS B 248 REMARK 465 ASP B 249 REMARK 465 PRO B 250 REMARK 465 ARG B 251 REMARK 465 GLY B 275 REMARK 465 SER B 276 REMARK 465 DA C 17 REMARK 465 DT C 18 REMARK 465 DA C 19 REMARK 465 DG C 20 REMARK 465 DT C 21 REMARK 465 DA E 17 REMARK 465 DT E 18 REMARK 465 DA E 19 REMARK 465 DG E 20 REMARK 465 DT E 21 REMARK 465 DT M 1 REMARK 465 DA M 2 REMARK 465 DT M 3 REMARK 465 DT N 1 REMARK 465 DA N 2 REMARK 465 DT N 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 40 CG CD OE1 OE2 REMARK 470 GLU A 41 CG CD OE1 OE2 REMARK 470 MET A 82 CG SD CE REMARK 470 GLN A 84 CG CD OE1 NE2 REMARK 470 SER A 107 OG REMARK 470 VAL A 127 CG1 CG2 REMARK 470 ARG A 136 CG CD NE CZ NH1 NH2 REMARK 470 PRO A 143 CG CD REMARK 470 LYS A 213 CG CD CE NZ REMARK 470 PRO A 218 CG CD REMARK 470 SER A 229 OG REMARK 470 GLU A 237 CG CD OE1 OE2 REMARK 470 PRO A 247 CG CD REMARK 470 LYS A 252 CG CD CE NZ REMARK 470 SER A 276 OG REMARK 470 LEU A 277 CG CD1 CD2 REMARK 470 LYS A 320 CG CD CE NZ REMARK 470 ARG A 482 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 587 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 597 CG CD OE1 OE2 REMARK 470 GLU B 40 CG CD OE1 OE2 REMARK 470 GLU B 41 CG CD OE1 OE2 REMARK 470 MET B 82 CG SD CE REMARK 470 SER B 107 OG REMARK 470 ARG B 136 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 141 CG CD NE CZ NH1 NH2 REMARK 470 PRO B 143 CG CD REMARK 470 GLU B 176 CG CD OE1 OE2 REMARK 470 LYS B 191 CG CD CE NZ REMARK 470 LYS B 213 CG CD CE NZ REMARK 470 SER B 229 OG REMARK 470 GLU B 237 CG CD OE1 OE2 REMARK 470 PRO B 247 CG CD REMARK 470 LYS B 252 CG CD CE NZ REMARK 470 GLU B 272 CG CD OE1 OE2 REMARK 470 GLU B 274 CG CD OE1 OE2 REMARK 470 GLN B 342 CG CD OE1 NE2 REMARK 470 ARG B 482 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 585 CG CD OE1 NE2 REMARK 470 ARG B 587 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 597 CG CD OE1 OE2 REMARK 470 DA N 4 P OP1 OP2 O5' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU B 597 O HOH B 900 2.05 REMARK 500 NH2 ARG B 513 O GLN B 551 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT C 1 P DT C 1 OP3 -0.126 REMARK 500 DT D 10 P DT D 10 OP3 -0.125 REMARK 500 DT E 1 P DT E 1 OP3 -0.132 REMARK 500 DT F 10 P DT F 10 OP3 -0.118 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 247 N - CA - CB ANGL. DEV. = 7.3 DEGREES REMARK 500 DT C 1 OP1 - P - OP2 ANGL. DEV. = -11.0 DEGREES REMARK 500 DT C 9 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DA C 10 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG C 11 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DT C 13 N3 - C4 - O4 ANGL. DEV. = 3.6 DEGREES REMARK 500 DG C 15 O4' - C1' - N9 ANGL. DEV. = 4.1 DEGREES REMARK 500 DT C 16 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DA D 11 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DT D 13 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DT E 1 OP1 - P - OP2 ANGL. DEV. = -12.2 DEGREES REMARK 500 DT E 9 O4' - C1' - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 DG E 11 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA F 11 O4' - C1' - N9 ANGL. DEV. = 5.5 DEGREES REMARK 500 DT F 13 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC M 5 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DA M 7 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 DC M 8 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DA N 7 O4' - C1' - N9 ANGL. DEV. = 4.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 17 150.36 -46.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 702 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 478 OD2 REMARK 620 2 ASP A 660 OD1 100.4 REMARK 620 3 HOH A 822 O 89.7 86.6 REMARK 620 4 DT D 10 OP1 168.6 90.9 92.4 REMARK 620 5 DT D 10 OP3 105.5 153.8 89.3 63.3 REMARK 620 6 HOH D 107 O 86.4 86.8 171.6 92.9 98.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 703 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 478 OD1 REMARK 620 2 ASP A 546 OD2 92.0 REMARK 620 3 HOH A 803 O 97.9 83.7 REMARK 620 4 HOH A 806 O 93.1 163.0 79.5 REMARK 620 5 DT D 10 OP3 108.6 94.2 153.5 99.6 REMARK 620 6 DC N 9 O3' 172.4 86.2 89.2 90.7 64.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 101 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 685 OXT REMARK 620 2 VAL A 685 O 54.4 REMARK 620 3 HOH A 824 O 81.7 87.5 REMARK 620 4 DT C 1 OP3 152.7 99.2 91.4 REMARK 620 5 DA C 3 OP1 92.7 146.7 92.9 114.1 REMARK 620 6 HOH C 202 O 92.2 83.8 171.2 91.2 93.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 702 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 478 OD1 REMARK 620 2 ASP B 546 OD2 92.9 REMARK 620 3 HOH B 801 O 97.3 78.4 REMARK 620 4 HOH B 936 O 90.0 156.2 77.8 REMARK 620 5 DT F 10 OP3 102.7 98.9 160.0 103.5 REMARK 620 6 DC M 9 O3' 172.3 86.1 90.1 94.0 69.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 703 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 478 OD2 REMARK 620 2 ASP B 660 OD1 108.4 REMARK 620 3 HOH B 823 O 87.4 98.0 REMARK 620 4 HOH B 867 O 90.2 91.5 170.5 REMARK 620 5 DT F 10 OP3 103.4 148.2 83.0 88.6 REMARK 620 6 DT F 10 OP1 165.2 86.4 91.4 88.6 61.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN E 101 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 685 OXT REMARK 620 2 VAL B 685 O 55.6 REMARK 620 3 HOH B 838 O 88.9 91.8 REMARK 620 4 DT E 1 OP3 159.8 104.3 94.7 REMARK 620 5 DA E 3 OP1 88.4 144.0 88.8 111.6 REMARK 620 6 HOH E 203 O 85.0 87.4 173.0 92.2 87.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TMP A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TMP B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN E 101 DBREF 4KPY A 1 685 UNP Q746M7 Q746M7_THET2 1 685 DBREF 4KPY B 1 685 UNP Q746M7 Q746M7_THET2 1 685 DBREF 4KPY C 1 21 PDB 4KPY 4KPY 1 21 DBREF 4KPY E 1 21 PDB 4KPY 4KPY 1 21 DBREF 4KPY D 10 19 PDB 4KPY 4KPY 10 19 DBREF 4KPY F 10 19 PDB 4KPY 4KPY 10 19 DBREF 4KPY M 1 9 PDB 4KPY 4KPY 1 9 DBREF 4KPY N 1 9 PDB 4KPY 4KPY 1 9 SEQRES 1 A 685 MET ASN HIS LEU GLY LYS THR GLU VAL PHE LEU ASN ARG SEQRES 2 A 685 PHE ALA LEU ARG PRO LEU ASN PRO GLU GLU LEU ARG PRO SEQRES 3 A 685 TRP ARG LEU GLU VAL VAL LEU ASP PRO PRO PRO GLY ARG SEQRES 4 A 685 GLU GLU VAL TYR PRO LEU LEU ALA GLN VAL ALA ARG ARG SEQRES 5 A 685 ALA GLY GLY VAL THR VAL ARG MET GLY ASP GLY LEU ALA SEQRES 6 A 685 SER TRP SER PRO PRO GLU VAL LEU VAL LEU GLU GLY THR SEQRES 7 A 685 LEU ALA ARG MET GLY GLN THR TYR ALA TYR ARG LEU TYR SEQRES 8 A 685 PRO LYS GLY ARG ARG PRO LEU ASP PRO LYS ASP PRO GLY SEQRES 9 A 685 GLU ARG SER VAL LEU SER ALA LEU ALA ARG ARG LEU LEU SEQRES 10 A 685 GLN GLU ARG LEU ARG ARG LEU GLU GLY VAL TRP VAL GLU SEQRES 11 A 685 GLY LEU ALA VAL TYR ARG ARG GLU HIS ALA ARG GLY PRO SEQRES 12 A 685 GLY TRP ARG VAL LEU GLY GLY ALA VAL LEU ASP LEU TRP SEQRES 13 A 685 VAL SER ASP SER GLY ALA PHE LEU LEU GLU VAL ASP PRO SEQRES 14 A 685 ALA TYR ARG ILE LEU CYS GLU MET SER LEU GLU ALA TRP SEQRES 15 A 685 LEU ALA GLN GLY HIS PRO LEU PRO LYS ARG VAL ARG ASN SEQRES 16 A 685 ALA TYR ASP ARG ARG THR TRP GLU LEU LEU ARG LEU GLY SEQRES 17 A 685 GLU GLU ASP PRO LYS GLU LEU PRO LEU PRO GLY GLY LEU SEQRES 18 A 685 SER LEU LEU ASP TYR HIS ALA SER LYS GLY ARG LEU GLN SEQRES 19 A 685 GLY ARG GLU GLY GLY ARG VAL ALA TRP VAL ALA ASP PRO SEQRES 20 A 685 LYS ASP PRO ARG LYS PRO ILE PRO HIS LEU THR GLY LEU SEQRES 21 A 685 LEU VAL PRO VAL LEU THR LEU GLU ASP LEU HIS GLU GLU SEQRES 22 A 685 GLU GLY SER LEU ALA LEU SER LEU PRO TRP GLU GLU ARG SEQRES 23 A 685 ARG ARG ARG THR ARG GLU ILE ALA SER TRP ILE GLY ARG SEQRES 24 A 685 ARG LEU GLY LEU GLY THR PRO GLU ALA VAL ARG ALA GLN SEQRES 25 A 685 ALA TYR ARG LEU SER ILE PRO LYS LEU MET GLY ARG ARG SEQRES 26 A 685 ALA VAL SER LYS PRO ALA ASP ALA LEU ARG VAL GLY PHE SEQRES 27 A 685 TYR ARG ALA GLN GLU THR ALA LEU ALA LEU LEU ARG LEU SEQRES 28 A 685 ASP GLY ALA GLN GLY TRP PRO GLU PHE LEU ARG ARG ALA SEQRES 29 A 685 LEU LEU ARG ALA PHE GLY ALA SER GLY ALA SER LEU ARG SEQRES 30 A 685 LEU HIS THR LEU HIS ALA HIS PRO SER GLN GLY LEU ALA SEQRES 31 A 685 PHE ARG GLU ALA LEU ARG LYS ALA LYS GLU GLU GLY VAL SEQRES 32 A 685 GLN ALA VAL LEU VAL LEU THR PRO PRO MET ALA TRP GLU SEQRES 33 A 685 ASP ARG ASN ARG LEU LYS ALA LEU LEU LEU ARG GLU GLY SEQRES 34 A 685 LEU PRO SER GLN ILE LEU ASN VAL PRO LEU ARG GLU GLU SEQRES 35 A 685 GLU ARG HIS ARG TRP GLU ASN ALA LEU LEU GLY LEU LEU SEQRES 36 A 685 ALA LYS ALA GLY LEU GLN VAL VAL ALA LEU SER GLY ALA SEQRES 37 A 685 TYR PRO ALA GLU LEU ALA VAL GLY PHE ASP ALA GLY GLY SEQRES 38 A 685 ARG GLU SER PHE ARG PHE GLY GLY ALA ALA CYS ALA VAL SEQRES 39 A 685 GLY GLY ASP GLY GLY HIS LEU LEU TRP THR LEU PRO GLU SEQRES 40 A 685 ALA GLN ALA GLY GLU ARG ILE PRO GLN GLU VAL VAL TRP SEQRES 41 A 685 ASP LEU LEU GLU GLU THR LEU TRP ALA PHE ARG ARG LYS SEQRES 42 A 685 ALA GLY ARG LEU PRO SER ARG VAL LEU LEU LEU ARG ASP SEQRES 43 A 685 GLY ARG VAL PRO GLN ASP GLU PHE ALA LEU ALA LEU GLU SEQRES 44 A 685 ALA LEU ALA ARG GLU GLY ILE ALA TYR ASP LEU VAL SER SEQRES 45 A 685 VAL ARG LYS SER GLY GLY GLY ARG VAL TYR PRO VAL GLN SEQRES 46 A 685 GLY ARG LEU ALA ASP GLY LEU TYR VAL PRO LEU GLU ASP SEQRES 47 A 685 LYS THR PHE LEU LEU LEU THR VAL HIS ARG ASP PHE ARG SEQRES 48 A 685 GLY THR PRO ARG PRO LEU LYS LEU VAL HIS GLU ALA GLY SEQRES 49 A 685 ASP THR PRO LEU GLU ALA LEU ALA HIS GLN ILE PHE HIS SEQRES 50 A 685 LEU THR ARG LEU TYR PRO ALA SER GLY PHE ALA PHE PRO SEQRES 51 A 685 ARG LEU PRO ALA PRO LEU HIS LEU ALA ASP ARG LEU VAL SEQRES 52 A 685 LYS GLU VAL GLY ARG LEU GLY ILE ARG HIS LEU LYS GLU SEQRES 53 A 685 VAL ASP ARG GLU LYS LEU PHE PHE VAL SEQRES 1 B 685 MET ASN HIS LEU GLY LYS THR GLU VAL PHE LEU ASN ARG SEQRES 2 B 685 PHE ALA LEU ARG PRO LEU ASN PRO GLU GLU LEU ARG PRO SEQRES 3 B 685 TRP ARG LEU GLU VAL VAL LEU ASP PRO PRO PRO GLY ARG SEQRES 4 B 685 GLU GLU VAL TYR PRO LEU LEU ALA GLN VAL ALA ARG ARG SEQRES 5 B 685 ALA GLY GLY VAL THR VAL ARG MET GLY ASP GLY LEU ALA SEQRES 6 B 685 SER TRP SER PRO PRO GLU VAL LEU VAL LEU GLU GLY THR SEQRES 7 B 685 LEU ALA ARG MET GLY GLN THR TYR ALA TYR ARG LEU TYR SEQRES 8 B 685 PRO LYS GLY ARG ARG PRO LEU ASP PRO LYS ASP PRO GLY SEQRES 9 B 685 GLU ARG SER VAL LEU SER ALA LEU ALA ARG ARG LEU LEU SEQRES 10 B 685 GLN GLU ARG LEU ARG ARG LEU GLU GLY VAL TRP VAL GLU SEQRES 11 B 685 GLY LEU ALA VAL TYR ARG ARG GLU HIS ALA ARG GLY PRO SEQRES 12 B 685 GLY TRP ARG VAL LEU GLY GLY ALA VAL LEU ASP LEU TRP SEQRES 13 B 685 VAL SER ASP SER GLY ALA PHE LEU LEU GLU VAL ASP PRO SEQRES 14 B 685 ALA TYR ARG ILE LEU CYS GLU MET SER LEU GLU ALA TRP SEQRES 15 B 685 LEU ALA GLN GLY HIS PRO LEU PRO LYS ARG VAL ARG ASN SEQRES 16 B 685 ALA TYR ASP ARG ARG THR TRP GLU LEU LEU ARG LEU GLY SEQRES 17 B 685 GLU GLU ASP PRO LYS GLU LEU PRO LEU PRO GLY GLY LEU SEQRES 18 B 685 SER LEU LEU ASP TYR HIS ALA SER LYS GLY ARG LEU GLN SEQRES 19 B 685 GLY ARG GLU GLY GLY ARG VAL ALA TRP VAL ALA ASP PRO SEQRES 20 B 685 LYS ASP PRO ARG LYS PRO ILE PRO HIS LEU THR GLY LEU SEQRES 21 B 685 LEU VAL PRO VAL LEU THR LEU GLU ASP LEU HIS GLU GLU SEQRES 22 B 685 GLU GLY SER LEU ALA LEU SER LEU PRO TRP GLU GLU ARG SEQRES 23 B 685 ARG ARG ARG THR ARG GLU ILE ALA SER TRP ILE GLY ARG SEQRES 24 B 685 ARG LEU GLY LEU GLY THR PRO GLU ALA VAL ARG ALA GLN SEQRES 25 B 685 ALA TYR ARG LEU SER ILE PRO LYS LEU MET GLY ARG ARG SEQRES 26 B 685 ALA VAL SER LYS PRO ALA ASP ALA LEU ARG VAL GLY PHE SEQRES 27 B 685 TYR ARG ALA GLN GLU THR ALA LEU ALA LEU LEU ARG LEU SEQRES 28 B 685 ASP GLY ALA GLN GLY TRP PRO GLU PHE LEU ARG ARG ALA SEQRES 29 B 685 LEU LEU ARG ALA PHE GLY ALA SER GLY ALA SER LEU ARG SEQRES 30 B 685 LEU HIS THR LEU HIS ALA HIS PRO SER GLN GLY LEU ALA SEQRES 31 B 685 PHE ARG GLU ALA LEU ARG LYS ALA LYS GLU GLU GLY VAL SEQRES 32 B 685 GLN ALA VAL LEU VAL LEU THR PRO PRO MET ALA TRP GLU SEQRES 33 B 685 ASP ARG ASN ARG LEU LYS ALA LEU LEU LEU ARG GLU GLY SEQRES 34 B 685 LEU PRO SER GLN ILE LEU ASN VAL PRO LEU ARG GLU GLU SEQRES 35 B 685 GLU ARG HIS ARG TRP GLU ASN ALA LEU LEU GLY LEU LEU SEQRES 36 B 685 ALA LYS ALA GLY LEU GLN VAL VAL ALA LEU SER GLY ALA SEQRES 37 B 685 TYR PRO ALA GLU LEU ALA VAL GLY PHE ASP ALA GLY GLY SEQRES 38 B 685 ARG GLU SER PHE ARG PHE GLY GLY ALA ALA CYS ALA VAL SEQRES 39 B 685 GLY GLY ASP GLY GLY HIS LEU LEU TRP THR LEU PRO GLU SEQRES 40 B 685 ALA GLN ALA GLY GLU ARG ILE PRO GLN GLU VAL VAL TRP SEQRES 41 B 685 ASP LEU LEU GLU GLU THR LEU TRP ALA PHE ARG ARG LYS SEQRES 42 B 685 ALA GLY ARG LEU PRO SER ARG VAL LEU LEU LEU ARG ASP SEQRES 43 B 685 GLY ARG VAL PRO GLN ASP GLU PHE ALA LEU ALA LEU GLU SEQRES 44 B 685 ALA LEU ALA ARG GLU GLY ILE ALA TYR ASP LEU VAL SER SEQRES 45 B 685 VAL ARG LYS SER GLY GLY GLY ARG VAL TYR PRO VAL GLN SEQRES 46 B 685 GLY ARG LEU ALA ASP GLY LEU TYR VAL PRO LEU GLU ASP SEQRES 47 B 685 LYS THR PHE LEU LEU LEU THR VAL HIS ARG ASP PHE ARG SEQRES 48 B 685 GLY THR PRO ARG PRO LEU LYS LEU VAL HIS GLU ALA GLY SEQRES 49 B 685 ASP THR PRO LEU GLU ALA LEU ALA HIS GLN ILE PHE HIS SEQRES 50 B 685 LEU THR ARG LEU TYR PRO ALA SER GLY PHE ALA PHE PRO SEQRES 51 B 685 ARG LEU PRO ALA PRO LEU HIS LEU ALA ASP ARG LEU VAL SEQRES 52 B 685 LYS GLU VAL GLY ARG LEU GLY ILE ARG HIS LEU LYS GLU SEQRES 53 B 685 VAL ASP ARG GLU LYS LEU PHE PHE VAL SEQRES 1 C 21 DT DG DA DG DG DT DA DG DT DA DG DG DT SEQRES 2 C 21 DT DG DT DA DT DA DG DT SEQRES 1 D 10 DT DA DC DT DA DC DC DT DC DG SEQRES 1 E 21 DT DG DA DG DG DT DA DG DT DA DG DG DT SEQRES 2 E 21 DT DG DT DA DT DA DG DT SEQRES 1 F 10 DT DA DC DT DA DC DC DT DC DG SEQRES 1 M 9 DT DA DT DA DC DA DA DC DC SEQRES 1 N 9 DT DA DT DA DC DA DA DC DC HET TMP A 701 21 HET MN A 702 1 HET MN A 703 1 HET TMP B 701 21 HET MN B 702 1 HET MN B 703 1 HET MN C 101 1 HET MN E 101 1 HETNAM TMP THYMIDINE-5'-PHOSPHATE HETNAM MN MANGANESE (II) ION FORMUL 9 TMP 2(C10 H15 N2 O8 P) FORMUL 10 MN 6(MN 2+) FORMUL 17 HOH *356(H2 O) HELIX 1 1 GLU A 41 GLY A 54 1 14 HELIX 2 2 PRO A 69 LEU A 73 5 5 HELIX 3 3 ASP A 102 ARG A 123 1 22 HELIX 4 4 SER A 178 ALA A 184 1 7 HELIX 5 5 SER A 222 LYS A 230 1 9 HELIX 6 6 THR A 266 LEU A 270 5 5 HELIX 7 7 PRO A 282 LEU A 301 1 20 HELIX 8 8 LYS A 329 ALA A 331 5 3 HELIX 9 9 ASP A 332 GLY A 337 1 6 HELIX 10 10 PRO A 358 GLY A 373 1 16 HELIX 11 11 HIS A 384 GLN A 387 5 4 HELIX 12 12 GLY A 388 GLU A 401 1 14 HELIX 13 13 ALA A 414 GLU A 428 1 15 HELIX 14 14 GLU A 443 ALA A 458 1 16 HELIX 15 15 PRO A 515 GLY A 535 1 21 HELIX 16 16 PHE A 554 GLY A 565 1 12 HELIX 17 17 ARG A 608 GLY A 612 5 5 HELIX 18 18 PRO A 627 THR A 639 1 13 HELIX 19 19 PRO A 653 GLY A 670 1 18 HELIX 20 20 ILE A 671 LEU A 674 5 4 HELIX 21 21 GLU B 41 ALA B 53 1 13 HELIX 22 22 PRO B 69 LEU B 73 5 5 HELIX 23 23 ASP B 102 ARG B 123 1 22 HELIX 24 24 SER B 178 ALA B 184 1 7 HELIX 25 25 SER B 222 SER B 229 1 8 HELIX 26 26 THR B 266 GLU B 274 5 9 HELIX 27 27 PRO B 282 LEU B 301 1 20 HELIX 28 28 LYS B 329 ALA B 331 5 3 HELIX 29 29 ASP B 332 GLY B 337 1 6 HELIX 30 30 PRO B 358 GLY B 373 1 16 HELIX 31 31 HIS B 384 GLN B 387 5 4 HELIX 32 32 GLY B 388 GLU B 401 1 14 HELIX 33 33 ALA B 414 GLU B 428 1 15 HELIX 34 34 GLU B 443 GLY B 459 1 17 HELIX 35 35 PRO B 515 GLY B 535 1 21 HELIX 36 36 PHE B 554 GLY B 565 1 12 HELIX 37 37 PRO B 627 THR B 639 1 13 HELIX 38 38 PRO B 653 GLY B 670 1 18 HELIX 39 39 ILE B 671 LEU B 674 5 4 SHEET 1 A14 TRP A 128 GLU A 130 0 SHEET 2 A14 ALA A 133 GLY A 142 -1 O TYR A 135 N TRP A 128 SHEET 3 A14 TRP A 145 VAL A 157 -1 O TRP A 145 N GLY A 142 SHEET 4 A14 ALA A 162 CYS A 175 -1 O LEU A 174 N ARG A 146 SHEET 5 A14 LYS A 6 PRO A 18 -1 N LEU A 16 O PHE A 163 SHEET 6 A14 GLU A 307 ARG A 315 -1 O GLU A 307 N ALA A 15 SHEET 7 A14 LEU A 592 GLU A 597 -1 O TYR A 593 N TYR A 314 SHEET 8 A14 THR A 600 LEU A 604 -1 O LEU A 602 N VAL A 594 SHEET 9 A14 LEU A 617 ALA A 623 -1 O LEU A 619 N PHE A 601 SHEET 10 A14 ALA A 567 ARG A 574 -1 N ARG A 574 O LYS A 618 SHEET 11 A14 ARG A 540 ASP A 546 1 N LEU A 543 O ASP A 569 SHEET 12 A14 LEU A 473 GLY A 480 1 N VAL A 475 O LEU A 544 SHEET 13 A14 ARG A 486 VAL A 494 -1 O GLY A 489 N ASP A 478 SHEET 14 A14 GLU A 507 GLN A 509 -1 O GLN A 509 N ARG A 486 SHEET 1 B11 HIS A 500 TRP A 503 0 SHEET 2 B11 ARG A 486 VAL A 494 -1 N VAL A 494 O HIS A 500 SHEET 3 B11 LEU A 473 GLY A 480 -1 N ASP A 478 O GLY A 489 SHEET 4 B11 ARG A 540 ASP A 546 1 O LEU A 544 N VAL A 475 SHEET 5 B11 ALA A 567 ARG A 574 1 O ASP A 569 N LEU A 543 SHEET 6 B11 LEU A 617 ALA A 623 -1 O LYS A 618 N ARG A 574 SHEET 7 B11 THR A 600 LEU A 604 -1 N PHE A 601 O LEU A 619 SHEET 8 B11 LEU A 592 GLU A 597 -1 N VAL A 594 O LEU A 602 SHEET 9 B11 GLU A 307 ARG A 315 -1 N TYR A 314 O TYR A 593 SHEET 10 B11 LYS A 6 PRO A 18 -1 N ALA A 15 O GLU A 307 SHEET 11 B11 VAL A 581 PRO A 583 -1 O TYR A 582 N PHE A 10 SHEET 1 C 5 THR A 57 MET A 60 0 SHEET 2 C 5 GLY A 63 SER A 66 -1 O ALA A 65 N VAL A 58 SHEET 3 C 5 TRP A 27 ASP A 34 -1 N LEU A 29 O LEU A 64 SHEET 4 C 5 TYR A 86 ARG A 95 -1 O GLY A 94 N ARG A 28 SHEET 5 C 5 GLU A 76 LEU A 79 -1 N LEU A 79 O TYR A 86 SHEET 1 D 5 PRO A 253 LEU A 257 0 SHEET 2 D 5 VAL A 241 ALA A 245 -1 N VAL A 244 O ILE A 254 SHEET 3 D 5 THR A 201 GLY A 208 -1 N GLY A 208 O VAL A 241 SHEET 4 D 5 ARG A 192 ASN A 195 -1 N VAL A 193 O TRP A 202 SHEET 5 D 5 LEU A 261 PRO A 263 -1 O VAL A 262 N ARG A 194 SHEET 1 E 3 ALA A 326 VAL A 327 0 SHEET 2 E 3 LEU A 321 MET A 322 -1 N LEU A 321 O VAL A 327 SHEET 3 E 3 ALA A 464 LEU A 465 -1 O ALA A 464 N MET A 322 SHEET 1 F 4 LEU A 376 THR A 380 0 SHEET 2 F 4 THR A 344 ARG A 350 1 N LEU A 346 O HIS A 379 SHEET 3 F 4 ALA A 405 THR A 410 1 O LEU A 407 N LEU A 349 SHEET 4 F 4 SER A 432 ASN A 436 1 O LEU A 435 N VAL A 408 SHEET 1 G14 TRP B 128 GLU B 130 0 SHEET 2 G14 ALA B 133 ALA B 140 -1 O ALA B 133 N GLU B 130 SHEET 3 G14 TRP B 145 VAL B 157 -1 O VAL B 147 N ALA B 140 SHEET 4 G14 ALA B 162 CYS B 175 -1 O ASP B 168 N VAL B 152 SHEET 5 G14 LYS B 6 PRO B 18 -1 N LEU B 16 O PHE B 163 SHEET 6 G14 GLU B 307 ARG B 315 -1 O GLU B 307 N ALA B 15 SHEET 7 G14 LEU B 592 GLU B 597 -1 O TYR B 593 N TYR B 314 SHEET 8 G14 THR B 600 LEU B 604 -1 O LEU B 602 N VAL B 594 SHEET 9 G14 LEU B 617 ALA B 623 -1 O LEU B 619 N PHE B 601 SHEET 10 G14 ALA B 567 ARG B 574 -1 N SER B 572 O VAL B 620 SHEET 11 G14 ARG B 540 ASP B 546 1 N LEU B 543 O ASP B 569 SHEET 12 G14 LEU B 473 GLY B 480 1 N VAL B 475 O LEU B 544 SHEET 13 G14 ARG B 486 VAL B 494 -1 O GLY B 489 N ASP B 478 SHEET 14 G14 GLU B 507 GLN B 509 -1 O GLN B 509 N ARG B 486 SHEET 1 H11 HIS B 500 TRP B 503 0 SHEET 2 H11 ARG B 486 VAL B 494 -1 N VAL B 494 O HIS B 500 SHEET 3 H11 LEU B 473 GLY B 480 -1 N ASP B 478 O GLY B 489 SHEET 4 H11 ARG B 540 ASP B 546 1 O LEU B 544 N VAL B 475 SHEET 5 H11 ALA B 567 ARG B 574 1 O ASP B 569 N LEU B 543 SHEET 6 H11 LEU B 617 ALA B 623 -1 O VAL B 620 N SER B 572 SHEET 7 H11 THR B 600 LEU B 604 -1 N PHE B 601 O LEU B 619 SHEET 8 H11 LEU B 592 GLU B 597 -1 N VAL B 594 O LEU B 602 SHEET 9 H11 GLU B 307 ARG B 315 -1 N TYR B 314 O TYR B 593 SHEET 10 H11 LYS B 6 PRO B 18 -1 N ALA B 15 O GLU B 307 SHEET 11 H11 VAL B 581 PRO B 583 -1 O TYR B 582 N PHE B 10 SHEET 1 I 5 THR B 57 MET B 60 0 SHEET 2 I 5 GLY B 63 SER B 66 -1 O ALA B 65 N VAL B 58 SHEET 3 I 5 TRP B 27 ASP B 34 -1 N LEU B 29 O LEU B 64 SHEET 4 I 5 GLN B 84 ARG B 95 -1 O GLY B 94 N ARG B 28 SHEET 5 I 5 GLU B 76 ARG B 81 -1 N LEU B 79 O TYR B 86 SHEET 1 J 5 PRO B 253 LEU B 257 0 SHEET 2 J 5 VAL B 241 ALA B 245 -1 N VAL B 244 O ILE B 254 SHEET 3 J 5 THR B 201 GLY B 208 -1 N ARG B 206 O TRP B 243 SHEET 4 J 5 ARG B 192 ASN B 195 -1 N VAL B 193 O TRP B 202 SHEET 5 J 5 LEU B 261 PRO B 263 -1 O VAL B 262 N ARG B 194 SHEET 1 K 2 LYS B 320 MET B 322 0 SHEET 2 K 2 ALA B 464 SER B 466 -1 O ALA B 464 N MET B 322 SHEET 1 L 4 LEU B 376 THR B 380 0 SHEET 2 L 4 THR B 344 ARG B 350 1 N LEU B 346 O HIS B 379 SHEET 3 L 4 ALA B 405 THR B 410 1 O LEU B 407 N LEU B 349 SHEET 4 L 4 SER B 432 ASN B 436 1 O GLN B 433 N VAL B 408 LINK OD2 ASP A 478 MN MN A 702 1555 1555 2.19 LINK OD1 ASP A 478 MN MN A 703 1555 1555 2.23 LINK OD2 ASP A 546 MN MN A 703 1555 1555 2.13 LINK OD1 ASP A 660 MN MN A 702 1555 1555 2.15 LINK OXT VAL A 685 MN MN C 101 1555 1555 2.26 LINK O VAL A 685 MN MN C 101 1555 1555 2.43 LINK MN MN A 702 O HOH A 822 1555 1555 2.21 LINK MN MN A 702 OP1 DT D 10 1555 1555 2.11 LINK MN MN A 702 OP3 DT D 10 1555 1555 2.40 LINK MN MN A 702 O HOH D 107 1555 1555 2.23 LINK MN MN A 703 O HOH A 803 1555 1555 2.20 LINK MN MN A 703 O HOH A 806 1555 1555 2.20 LINK MN MN A 703 OP3 DT D 10 1555 1555 1.99 LINK MN MN A 703 O3' DC N 9 1555 1555 2.21 LINK O HOH A 824 MN MN C 101 1555 1555 2.18 LINK OD1 ASP B 478 MN MN B 702 1555 1555 2.22 LINK OD2 ASP B 478 MN MN B 703 1555 1555 2.16 LINK OD2 ASP B 546 MN MN B 702 1555 1555 2.13 LINK OD1 ASP B 660 MN MN B 703 1555 1555 2.13 LINK OXT VAL B 685 MN MN E 101 1555 1555 2.14 LINK O VAL B 685 MN MN E 101 1555 1555 2.40 LINK MN MN B 702 O HOH B 801 1555 1555 2.23 LINK MN MN B 702 O HOH B 936 1555 1555 2.19 LINK MN MN B 702 OP3 DT F 10 1555 1555 2.13 LINK MN MN B 702 O3' DC M 9 1555 1555 2.22 LINK MN MN B 703 O HOH B 823 1555 1555 2.18 LINK MN MN B 703 O HOH B 867 1555 1555 2.18 LINK MN MN B 703 OP3 DT F 10 1555 1555 2.25 LINK MN MN B 703 OP1 DT F 10 1555 1555 2.49 LINK O HOH B 838 MN MN E 101 1555 1555 2.22 LINK OP3 DT C 1 MN MN C 101 1555 1555 2.12 LINK OP1 DA C 3 MN MN C 101 1555 1555 1.97 LINK MN MN C 101 O HOH C 202 1555 1555 2.22 LINK OP3 DT E 1 MN MN E 101 1555 1555 1.98 LINK OP1 DA E 3 MN MN E 101 1555 1555 1.96 LINK MN MN E 101 O HOH E 203 1555 1555 2.16 CISPEP 1 ASP A 34 PRO A 35 0 4.84 CISPEP 2 GLU A 125 GLY A 126 0 -2.64 CISPEP 3 VAL A 437 PRO A 438 0 5.36 CISPEP 4 ASP B 34 PRO B 35 0 2.76 CISPEP 5 GLU B 125 GLY B 126 0 -3.31 CISPEP 6 VAL B 437 PRO B 438 0 3.75 SITE 1 AC1 16 ASN A 195 TYR A 197 ARG A 200 TRP A 202 SITE 2 AC1 16 LEU A 217 PRO A 218 TYR A 226 HIS A 227 SITE 3 AC1 16 ARG A 232 ILE A 254 PRO A 255 HIS A 256 SITE 4 AC1 16 HOH A 893 PRO B 37 GLY B 38 ARG B 39 SITE 1 AC2 6 ASP A 478 ASP A 660 MN A 703 HOH A 822 SITE 2 AC2 6 DT D 10 HOH D 107 SITE 1 AC3 7 ASP A 478 ASP A 546 MN A 702 HOH A 803 SITE 2 AC3 7 HOH A 806 DT D 10 DC N 9 SITE 1 AC4 10 PRO A 37 GLY A 38 ARG A 39 TYR B 197 SITE 2 AC4 10 ARG B 200 TYR B 226 HIS B 227 ARG B 232 SITE 3 AC4 10 PRO B 255 HIS B 256 SITE 1 AC5 7 ASP B 478 ASP B 546 MN B 703 HOH B 801 SITE 2 AC5 7 HOH B 936 DT F 10 DC M 9 SITE 1 AC6 6 ASP B 478 ASP B 660 MN B 702 HOH B 823 SITE 2 AC6 6 HOH B 867 DT F 10 SITE 1 AC7 5 VAL A 685 HOH A 824 DT C 1 DA C 3 SITE 2 AC7 5 HOH C 202 SITE 1 AC8 5 VAL B 685 HOH B 838 DT E 1 DA E 3 SITE 2 AC8 5 HOH E 203 CRYST1 111.329 118.362 160.873 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008982 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008449 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006216 0.00000