HEADER TRANSFERASE 14-MAY-13 4KQB TITLE CRYSTAL STRUCTURE OF THE GOLGI CASEIN KINASE WITH MN/ADP BOUND CAVEAT 4KQB NAG F 1 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN H03A11.1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_COMMON: NEMATODE; SOURCE 4 ORGANISM_TAXID: 6239; SOURCE 5 GENE: CELE_H03A11.1, H03A11.1; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS SECRETED KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.XIAO REVDAT 3 29-JUL-20 4KQB 1 CAVEAT COMPND REMARK HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 10-JUL-13 4KQB 1 JRNL REVDAT 1 26-JUN-13 4KQB 0 JRNL AUTH J.XIAO,V.S.TAGLIABRACCI,J.WEN,S.A.KIM,J.E.DIXON JRNL TITL CRYSTAL STRUCTURE OF THE GOLGI CASEIN KINASE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 10574 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23754375 JRNL DOI 10.1073/PNAS.1309211110 REMARK 2 REMARK 2 RESOLUTION. 3.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 18128 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 913 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.4337 - 5.8223 1.00 2701 142 0.2113 0.2418 REMARK 3 2 5.8223 - 4.6225 1.00 2574 135 0.2073 0.2463 REMARK 3 3 4.6225 - 4.0385 1.00 2545 134 0.1873 0.2178 REMARK 3 4 4.0385 - 3.6694 1.00 2500 132 0.2088 0.2613 REMARK 3 5 3.6694 - 3.4065 0.95 2395 128 0.2378 0.2620 REMARK 3 6 3.4065 - 3.2057 0.92 2326 126 0.2662 0.3050 REMARK 3 7 3.2057 - 3.0452 0.87 2174 116 0.2787 0.3481 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 7307 REMARK 3 ANGLE : 0.844 9854 REMARK 3 CHIRALITY : 0.061 1050 REMARK 3 PLANARITY : 0.004 1261 REMARK 3 DIHEDRAL : 14.266 2760 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 58.7313 20.9562 199.9055 REMARK 3 T TENSOR REMARK 3 T11: 0.4750 T22: 0.3517 REMARK 3 T33: 0.4900 T12: -0.0429 REMARK 3 T13: 0.1056 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.4596 L22: 0.3735 REMARK 3 L33: 1.0145 L12: -0.3232 REMARK 3 L13: -0.1084 L23: -0.5060 REMARK 3 S TENSOR REMARK 3 S11: -0.0189 S12: -0.0408 S13: 0.0706 REMARK 3 S21: -0.0705 S22: 0.0145 S23: 0.0098 REMARK 3 S31: 0.1212 S32: 0.0786 S33: -0.0017 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KQB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079660. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18134 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.045 REMARK 200 RESOLUTION RANGE LOW (A) : 48.428 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG4000, 200 MM IMIDAZOLE-MALATE REMARK 280 (4:1), 3 MM NICL2, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.24500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.38250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.85100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.38250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.24500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.85100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 116.98000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -50.85100 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 396.91250 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 60 REMARK 465 LEU A 61 REMARK 465 LYS A 122 REMARK 465 SER A 123 REMARK 465 GLU A 124 REMARK 465 GLN A 125 REMARK 465 ARG A 126 REMARK 465 ASN A 127 REMARK 465 VAL A 128 REMARK 465 PRO A 129 REMARK 465 SER A 489 REMARK 465 ASP A 490 REMARK 465 ALA A 491 REMARK 465 GLU A 492 REMARK 465 GLN A 493 REMARK 465 ASN A 494 REMARK 465 ASP A 495 REMARK 465 GLU A 496 REMARK 465 GLU A 497 REMARK 465 GLN A 498 REMARK 465 SER A 499 REMARK 465 GLU A 500 REMARK 465 GLU A 501 REMARK 465 HIS A 502 REMARK 465 GLN A 503 REMARK 465 ASP A 504 REMARK 465 LYS A 505 REMARK 465 LYS A 506 REMARK 465 ASP A 507 REMARK 465 ASP A 508 REMARK 465 LYS A 509 REMARK 465 LYS A 510 REMARK 465 THR A 511 REMARK 465 VAL A 512 REMARK 465 SER B 60 REMARK 465 LEU B 61 REMARK 465 LYS B 122 REMARK 465 SER B 123 REMARK 465 GLU B 124 REMARK 465 GLN B 125 REMARK 465 ARG B 126 REMARK 465 ASN B 127 REMARK 465 VAL B 128 REMARK 465 PRO B 129 REMARK 465 VAL B 488 REMARK 465 SER B 489 REMARK 465 ASP B 490 REMARK 465 ALA B 491 REMARK 465 GLU B 492 REMARK 465 GLN B 493 REMARK 465 ASN B 494 REMARK 465 ASP B 495 REMARK 465 GLU B 496 REMARK 465 GLU B 497 REMARK 465 GLN B 498 REMARK 465 SER B 499 REMARK 465 GLU B 500 REMARK 465 GLU B 501 REMARK 465 HIS B 502 REMARK 465 GLN B 503 REMARK 465 ASP B 504 REMARK 465 LYS B 505 REMARK 465 LYS B 506 REMARK 465 ASP B 507 REMARK 465 ASP B 508 REMARK 465 LYS B 509 REMARK 465 LYS B 510 REMARK 465 THR B 511 REMARK 465 VAL B 512 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 80 33.63 -86.77 REMARK 500 ASP A 149 94.31 74.66 REMARK 500 ARG A 195 -79.00 -118.27 REMARK 500 SER A 271 -167.98 58.88 REMARK 500 ASP A 366 30.92 -94.32 REMARK 500 ASP A 387 73.81 52.79 REMARK 500 MET A 421 172.31 -55.07 REMARK 500 ASN A 422 -50.23 70.45 REMARK 500 ASN B 80 34.22 -86.15 REMARK 500 ASP B 149 93.29 73.88 REMARK 500 ARG B 195 -80.10 -116.78 REMARK 500 SER B 271 -166.27 59.14 REMARK 500 ASP B 366 30.58 -94.50 REMARK 500 VAL B 375 -30.95 -138.66 REMARK 500 ASP B 387 72.98 54.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 606 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 213 OE1 REMARK 620 2 ASP A 387 OD1 76.2 REMARK 620 3 ADP A 608 O3B 73.6 71.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 607 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 387 OD2 REMARK 620 2 ADP A 608 O3B 63.8 REMARK 620 3 ADP A 608 O1A 86.0 66.5 REMARK 620 4 ADP A 608 O1B 114.5 50.6 71.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 606 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 213 OE1 REMARK 620 2 ASP B 387 OD1 73.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 607 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 387 OD2 REMARK 620 2 ADP B 608 O1B 81.3 REMARK 620 3 ADP B 608 O1A 79.3 79.3 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KQA RELATED DB: PDB DBREF 4KQB A 60 512 UNP Q9XTW2 Q9XTW2_CAEEL 60 512 DBREF 4KQB B 60 512 UNP Q9XTW2 Q9XTW2_CAEEL 60 512 SEQRES 1 A 453 SER LEU PRO HIS GLN PRO ILE PRO PRO SER LEU GLY GLU SEQRES 2 A 453 LYS ASP LEU SER ASP PRO PHE ASN PHE LEU PHE SER SER SEQRES 3 A 453 ASN LYS ILE THR LEU ARG LYS LEU TYR ASP LEU THR LYS SEQRES 4 A 453 ASN VAL ASP PHE ASP GLN LEU ARG GLN ASN GLU CYS LYS SEQRES 5 A 453 LYS ASN ILE THR LEU SER LYS PHE TRP GLU LYS SER GLU SEQRES 6 A 453 GLN ARG ASN VAL PRO GLU ASP ASP ASN TRP GLU ARG PHE SEQRES 7 A 453 TYR SER ASN ILE GLY SER CYS SER VAL TYR SER ASP ASP SEQRES 8 A 453 GLN MET ILE ASP ASN LEU LEU HIS ASP LEU ASN THR SER SEQRES 9 A 453 PRO ILE LYS HIS VAL HIS ILE MET ASP GLY GLY THR GLN SEQRES 10 A 453 VAL LYS PHE VAL PHE THR PHE LYS ASN ASP LYS GLN ALA SEQRES 11 A 453 VAL PHE LYS PRO MET ARG PHE GLY ARG ASP TYR GLU SER SEQRES 12 A 453 ASP PRO ASN HIS PHE TYR PHE SER ASP PHE GLU ARG HIS SEQRES 13 A 453 HIS ALA GLU ILE ALA THR PHE HIS LEU ASP ARG VAL LEU SEQRES 14 A 453 GLY PHE ARG ARG ALA ILE PRO THR VAL GLY ARG VAL LEU SEQRES 15 A 453 ASN MET THR THR GLU LEU PHE GLU LYS ALA GLU LYS LYS SEQRES 16 A 453 LEU LYS LYS THR PHE PHE PHE SER PRO ALA LYS ASN PHE SEQRES 17 A 453 CYS PHE VAL SER ARG CYS ASP TYR TYR CYS ASP THR THR SEQRES 18 A 453 HIS ALA ILE CYS GLY LEU PRO ASP MET LYS GLU GLY SER SEQRES 19 A 453 VAL GLN VAL PHE LEU PRO ASP GLU SER ALA VAL PRO ARG SEQRES 20 A 453 LYS HIS ASN ARG SER PRO TYR ARG ARG THR TYR SER LYS SEQRES 21 A 453 LYS ASN GLN VAL ALA GLU TRP GLN SER SER MET ASN TYR SEQRES 22 A 453 CYS THR ASP LYS VAL LYS THR LYS ARG GLN TYR ALA HIS SEQRES 23 A 453 GLY ARG ARG LEU LEU ASP LEU VAL ASP ILE HIS ILE LEU SEQRES 24 A 453 ASP TYR LEU ILE GLY ASN GLN ASP ARG HIS HIS PHE GLU SEQRES 25 A 453 SER PHE ASN VAL PHE ASN ASP LEU PRO SER TYR ALA ILE SEQRES 26 A 453 HIS LEU ASP HIS GLY ARG ALA PHE GLY ARG SER ASP PHE SEQRES 27 A 453 ASP ASP ASP ASP ILE ILE LEU PRO LEU ARG GLN CYS CYS SEQRES 28 A 453 ILE LEU ARG PRO SER THR PHE GLN THR LEU MET ASN PHE SEQRES 29 A 453 TYR SER THR PRO LYS SER LEU THR LYS ALA LEU HIS GLU SEQRES 30 A 453 SER LEU SER LYS ASP PRO ALA HIS PRO ILE LEU ALA TYR SEQRES 31 A 453 LYS HIS TYR PRO ALA MET GLU ARG ARG LEU ALA LYS ILE SEQRES 32 A 453 MET SER HIS ILE LEU GLU CYS PHE GLU SER ARG GLY VAL SEQRES 33 A 453 ALA GLU VAL LEU VAL ALA GLU TYR ASN ASN PRO ASP VAL SEQRES 34 A 453 SER ASP ALA GLU GLN ASN ASP GLU GLU GLN SER GLU GLU SEQRES 35 A 453 HIS GLN ASP LYS LYS ASP ASP LYS LYS THR VAL SEQRES 1 B 453 SER LEU PRO HIS GLN PRO ILE PRO PRO SER LEU GLY GLU SEQRES 2 B 453 LYS ASP LEU SER ASP PRO PHE ASN PHE LEU PHE SER SER SEQRES 3 B 453 ASN LYS ILE THR LEU ARG LYS LEU TYR ASP LEU THR LYS SEQRES 4 B 453 ASN VAL ASP PHE ASP GLN LEU ARG GLN ASN GLU CYS LYS SEQRES 5 B 453 LYS ASN ILE THR LEU SER LYS PHE TRP GLU LYS SER GLU SEQRES 6 B 453 GLN ARG ASN VAL PRO GLU ASP ASP ASN TRP GLU ARG PHE SEQRES 7 B 453 TYR SER ASN ILE GLY SER CYS SER VAL TYR SER ASP ASP SEQRES 8 B 453 GLN MET ILE ASP ASN LEU LEU HIS ASP LEU ASN THR SER SEQRES 9 B 453 PRO ILE LYS HIS VAL HIS ILE MET ASP GLY GLY THR GLN SEQRES 10 B 453 VAL LYS PHE VAL PHE THR PHE LYS ASN ASP LYS GLN ALA SEQRES 11 B 453 VAL PHE LYS PRO MET ARG PHE GLY ARG ASP TYR GLU SER SEQRES 12 B 453 ASP PRO ASN HIS PHE TYR PHE SER ASP PHE GLU ARG HIS SEQRES 13 B 453 HIS ALA GLU ILE ALA THR PHE HIS LEU ASP ARG VAL LEU SEQRES 14 B 453 GLY PHE ARG ARG ALA ILE PRO THR VAL GLY ARG VAL LEU SEQRES 15 B 453 ASN MET THR THR GLU LEU PHE GLU LYS ALA GLU LYS LYS SEQRES 16 B 453 LEU LYS LYS THR PHE PHE PHE SER PRO ALA LYS ASN PHE SEQRES 17 B 453 CYS PHE VAL SER ARG CYS ASP TYR TYR CYS ASP THR THR SEQRES 18 B 453 HIS ALA ILE CYS GLY LEU PRO ASP MET LYS GLU GLY SER SEQRES 19 B 453 VAL GLN VAL PHE LEU PRO ASP GLU SER ALA VAL PRO ARG SEQRES 20 B 453 LYS HIS ASN ARG SER PRO TYR ARG ARG THR TYR SER LYS SEQRES 21 B 453 LYS ASN GLN VAL ALA GLU TRP GLN SER SER MET ASN TYR SEQRES 22 B 453 CYS THR ASP LYS VAL LYS THR LYS ARG GLN TYR ALA HIS SEQRES 23 B 453 GLY ARG ARG LEU LEU ASP LEU VAL ASP ILE HIS ILE LEU SEQRES 24 B 453 ASP TYR LEU ILE GLY ASN GLN ASP ARG HIS HIS PHE GLU SEQRES 25 B 453 SER PHE ASN VAL PHE ASN ASP LEU PRO SER TYR ALA ILE SEQRES 26 B 453 HIS LEU ASP HIS GLY ARG ALA PHE GLY ARG SER ASP PHE SEQRES 27 B 453 ASP ASP ASP ASP ILE ILE LEU PRO LEU ARG GLN CYS CYS SEQRES 28 B 453 ILE LEU ARG PRO SER THR PHE GLN THR LEU MET ASN PHE SEQRES 29 B 453 TYR SER THR PRO LYS SER LEU THR LYS ALA LEU HIS GLU SEQRES 30 B 453 SER LEU SER LYS ASP PRO ALA HIS PRO ILE LEU ALA TYR SEQRES 31 B 453 LYS HIS TYR PRO ALA MET GLU ARG ARG LEU ALA LYS ILE SEQRES 32 B 453 MET SER HIS ILE LEU GLU CYS PHE GLU SER ARG GLY VAL SEQRES 33 B 453 ALA GLU VAL LEU VAL ALA GLU TYR ASN ASN PRO ASP VAL SEQRES 34 B 453 SER ASP ALA GLU GLN ASN ASP GLU GLU GLN SER GLU GLU SEQRES 35 B 453 HIS GLN ASP LYS LYS ASP ASP LYS LYS THR VAL MODRES 4KQB ASN A 113 ASN GLYCOSYLATION SITE MODRES 4KQB ASN B 113 ASN GLYCOSYLATION SITE MODRES 4KQB ASN B 242 ASN GLYCOSYLATION SITE MODRES 4KQB ASN A 242 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET MAN C 3 11 HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET MAN E 3 11 HET NAG F 1 14 HET NAG F 2 14 HET MN A 606 1 HET MN A 607 1 HET ADP A 608 27 HET NI A 609 1 HET MN B 606 1 HET MN B 607 1 HET ADP B 608 27 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM MN MANGANESE (II) ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM NI NICKEL (II) ION FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 3 MAN 2(C6 H12 O6) FORMUL 7 MN 4(MN 2+) FORMUL 9 ADP 2(C10 H15 N5 O10 P2) FORMUL 10 NI NI 2+ HELIX 1 1 PRO A 67 GLY A 71 5 5 HELIX 2 2 ASN A 86 LEU A 96 1 11 HELIX 3 3 ASP A 101 GLN A 107 1 7 HELIX 4 4 THR A 115 TRP A 120 1 6 HELIX 5 5 ASP A 132 ASN A 140 1 9 HELIX 6 6 ASP A 149 SER A 163 1 15 HELIX 7 7 ARG A 214 LEU A 228 1 15 HELIX 8 8 GLU A 252 LYS A 257 1 6 HELIX 9 9 ALA A 324 SER A 329 1 6 HELIX 10 10 ASN A 331 VAL A 337 1 7 HELIX 11 11 LYS A 340 ALA A 344 1 5 HELIX 12 12 ARG A 347 GLY A 363 1 17 HELIX 13 13 ILE A 403 CYS A 410 1 8 HELIX 14 14 ARG A 413 TYR A 424 1 12 HELIX 15 15 LYS A 428 LYS A 440 1 13 HELIX 16 16 LYS A 450 ARG A 473 1 24 HELIX 17 17 GLY A 474 LEU A 479 1 6 HELIX 18 18 PRO B 67 GLY B 71 5 5 HELIX 19 19 ASN B 86 LEU B 96 1 11 HELIX 20 20 ASP B 101 GLN B 107 1 7 HELIX 21 21 THR B 115 GLU B 121 1 7 HELIX 22 22 ASP B 132 ASN B 140 1 9 HELIX 23 23 ASP B 149 SER B 163 1 15 HELIX 24 24 ARG B 214 LEU B 228 1 15 HELIX 25 25 GLU B 252 LYS B 257 1 6 HELIX 26 26 ALA B 324 SER B 329 1 6 HELIX 27 27 ASN B 331 VAL B 337 1 7 HELIX 28 28 LYS B 340 ALA B 344 1 5 HELIX 29 29 ARG B 347 GLY B 363 1 17 HELIX 30 30 ILE B 403 CYS B 410 1 8 HELIX 31 31 ARG B 413 SER B 425 1 13 HELIX 32 32 LYS B 428 LYS B 440 1 13 HELIX 33 33 LYS B 450 ARG B 473 1 24 HELIX 34 34 GLY B 474 LEU B 479 1 6 SHEET 1 A 5 ILE A 165 ILE A 170 0 SHEET 2 A 5 PHE A 179 PHE A 183 -1 O THR A 182 N HIS A 167 SHEET 3 A 5 GLN A 188 PRO A 193 -1 O PHE A 191 N PHE A 179 SHEET 4 A 5 MET A 289 VAL A 296 -1 O GLN A 295 N VAL A 190 SHEET 5 A 5 THR A 236 ASN A 242 -1 N VAL A 237 O VAL A 294 SHEET 1 B 3 PHE A 259 PHE A 261 0 SHEET 2 B 3 PHE A 267 PHE A 269 -1 O CYS A 268 N PHE A 260 SHEET 3 B 3 ILE A 283 CYS A 284 -1 O ILE A 283 N PHE A 269 SHEET 1 C 3 ARG A 306 ARG A 310 0 SHEET 2 C 3 HIS A 369 PHE A 373 -1 O SER A 372 N LYS A 307 SHEET 3 C 3 ALA A 383 ILE A 384 -1 O ILE A 384 N GLU A 371 SHEET 1 D 2 HIS A 345 GLY A 346 0 SHEET 2 D 2 TYR A 483 ASN A 484 -1 O TYR A 483 N GLY A 346 SHEET 1 E 5 ILE B 165 ILE B 170 0 SHEET 2 E 5 PHE B 179 PHE B 183 -1 O THR B 182 N HIS B 167 SHEET 3 E 5 GLN B 188 PRO B 193 -1 O PHE B 191 N PHE B 179 SHEET 4 E 5 MET B 289 VAL B 296 -1 O GLN B 295 N VAL B 190 SHEET 5 E 5 THR B 236 ASN B 242 -1 N VAL B 237 O VAL B 294 SHEET 1 F 3 PHE B 259 PHE B 261 0 SHEET 2 F 3 PHE B 267 PHE B 269 -1 O CYS B 268 N PHE B 260 SHEET 3 F 3 ILE B 283 CYS B 284 -1 O ILE B 283 N PHE B 269 SHEET 1 G 3 ARG B 306 ARG B 310 0 SHEET 2 G 3 HIS B 369 PHE B 373 -1 O SER B 372 N LYS B 307 SHEET 3 G 3 ALA B 383 ILE B 384 -1 O ILE B 384 N GLU B 371 SHEET 1 H 2 HIS B 345 GLY B 346 0 SHEET 2 H 2 TYR B 483 ASN B 484 -1 O TYR B 483 N GLY B 346 SSBOND 1 CYS A 110 CYS A 144 1555 1555 2.03 SSBOND 2 CYS A 268 CYS A 284 1555 1555 2.03 SSBOND 3 CYS A 273 CYS A 277 1555 1555 2.03 SSBOND 4 CYS A 333 CYS A 409 1555 1555 2.03 SSBOND 5 CYS A 410 CYS A 469 1555 1555 2.03 SSBOND 6 CYS B 110 CYS B 144 1555 1555 2.03 SSBOND 7 CYS B 268 CYS B 284 1555 1555 2.03 SSBOND 8 CYS B 273 CYS B 277 1555 1555 2.03 SSBOND 9 CYS B 333 CYS B 409 1555 1555 2.03 SSBOND 10 CYS B 410 CYS B 469 1555 1555 2.03 LINK ND2 ASN A 113 C1 NAG C 1 1555 1555 1.40 LINK ND2 ASN A 242 C1 NAG D 1 1555 1555 1.49 LINK ND2 ASN B 113 C1 NAG E 1 1555 1555 1.44 LINK ND2 ASN B 242 C1 NAG F 1 1555 1555 1.46 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.41 LINK O4 NAG C 2 C1 MAN C 3 1555 1555 1.41 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.43 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.42 LINK O4 NAG E 2 C1 MAN E 3 1555 1555 1.42 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.41 LINK OE1 GLU A 213 MN MN A 606 1555 1555 2.10 LINK NE2 HIS A 281 NI NI A 609 1555 1555 2.18 LINK OD1 ASP A 387 MN MN A 606 1555 1555 2.46 LINK OD2 ASP A 387 MN MN A 607 1555 1555 2.01 LINK MN MN A 606 O3B ADP A 608 1555 1555 2.42 LINK MN MN A 607 O3B ADP A 608 1555 1555 3.13 LINK MN MN A 607 O1A ADP A 608 1555 1555 1.97 LINK MN MN A 607 O1B ADP A 608 1555 1555 2.71 LINK OE1 GLU B 213 MN MN B 606 1555 1555 2.09 LINK OD1 ASP B 387 MN MN B 606 1555 1555 2.52 LINK OD2 ASP B 387 MN MN B 607 1555 1555 2.09 LINK MN MN B 607 O1B ADP B 608 1555 1555 2.11 LINK MN MN B 607 O1A ADP B 608 1555 1555 2.32 CISPEP 1 LEU A 286 PRO A 287 0 2.54 CISPEP 2 HIS A 444 PRO A 445 0 1.15 CISPEP 3 LEU B 286 PRO B 287 0 1.83 CISPEP 4 HIS B 444 PRO B 445 0 1.37 CRYST1 58.490 101.702 158.765 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017097 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009833 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006299 0.00000