HEADER TRANSFERASE 15-MAY-13 4KQS TITLE CRYSTAL STRUCTURE OF FARNESYL PYROPHOSPHATE SYNTHASE MUTANT (Y204A) TITLE 2 COMPLEXED WITH MG, RISEDRONATE AND ISOPENTENYL PYROPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FARNESYL PYROPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 67-419; COMPND 5 SYNONYM: FPP SYNTHASE, FPS, (2E,6E)-FARNESYL DIPHOSPHATE SYNTHASE, COMPND 6 DIMETHYLALLYLTRANSTRANSFERASE, FARNESYL DIPHOSPHATE SYNTHASE, COMPND 7 GERANYLTRANSTRANSFERASE; COMPND 8 EC: 2.5.1.10, 2.5.1.1; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FDPS, FPS, KIAA1293; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET 11 DERIVATIVE KEYWDS ISOPRENE BIOSYNTHESIS, LIPID SYNTHESIS, STEROID BIOSYNTHESIS, KEYWDS 2 TRANSFERASE, DIMETHYLALLYL PYROPHOSPHATE, ISOPRENOID PATHWAY, KEYWDS 3 CHOLESTEROL SYNTHESIS, BISPHOSPHONATES EXPDTA X-RAY DIFFRACTION AUTHOR B.L.BARNETT,M.K.TSOUMPRA,J.R.C.MUNIZ REVDAT 2 20-SEP-23 4KQS 1 REMARK SEQADV HETSYN LINK REVDAT 1 30-APR-14 4KQS 0 JRNL AUTH M.K.TSOUMPRA,J.R.C.MUNIZ,B.L.BARNETT,E.PILKA,A.KWAASI, JRNL AUTH 2 K.L.KAVANAGH,A.G.EVDOKIMOV,R.L.WALTER,F.H.EBETINO, JRNL AUTH 3 U.OPPERMANN,R.G.G.RUSSELL,J.E.DUNFORD JRNL TITL CRYSTAL STRUCTURE OF FARNESYL PYROPHOSPHATE SYNTHASE MUTANT JRNL TITL 2 (Y204A) COMPLEXED WITH MG, RISEDRONATE AND ISOPENTENYL JRNL TITL 3 PYROPHOSPHATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 29970 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1523 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.04 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.65 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2900 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2232 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2728 REMARK 3 BIN R VALUE (WORKING SET) : 0.2213 REMARK 3 BIN FREE R VALUE : 0.2529 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.93 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 172 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2719 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 418 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.56650 REMARK 3 B22 (A**2) : 2.56650 REMARK 3 B33 (A**2) : -5.13300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.210 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.145 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2844 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3866 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1360 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 77 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 410 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2844 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 361 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3873 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 0.89 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.73 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.76 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|9 - 29} REMARK 3 ORIGIN FOR THE GROUP (A): 29.9411 0.2033 26.6859 REMARK 3 T TENSOR REMARK 3 T11: 0.0218 T22: -0.0746 REMARK 3 T33: -0.0265 T12: -0.0414 REMARK 3 T13: -0.0209 T23: -0.0515 REMARK 3 L TENSOR REMARK 3 L11: 2.3409 L22: 3.4905 REMARK 3 L33: 0.2351 L12: 1.8999 REMARK 3 L13: 1.4529 L23: 1.4251 REMARK 3 S TENSOR REMARK 3 S11: -0.0748 S12: -0.1470 S13: 0.1396 REMARK 3 S21: 0.0916 S22: 0.1362 S23: -0.0776 REMARK 3 S31: -0.1623 S32: 0.3060 S33: -0.0614 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|30 - 52} REMARK 3 ORIGIN FOR THE GROUP (A): 26.3074 -16.5326 32.2101 REMARK 3 T TENSOR REMARK 3 T11: -0.0082 T22: -0.0420 REMARK 3 T33: -0.0399 T12: 0.0084 REMARK 3 T13: -0.0477 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 1.5826 REMARK 3 L33: 2.3859 L12: -0.5541 REMARK 3 L13: -0.6821 L23: 1.2778 REMARK 3 S TENSOR REMARK 3 S11: -0.0328 S12: -0.2108 S13: 0.1442 REMARK 3 S21: 0.1602 S22: -0.0021 S23: -0.0118 REMARK 3 S31: -0.0068 S32: -0.0122 S33: 0.0349 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|53 - 78} REMARK 3 ORIGIN FOR THE GROUP (A): 25.7007 6.3280 16.9364 REMARK 3 T TENSOR REMARK 3 T11: 0.0948 T22: -0.0441 REMARK 3 T33: 0.0542 T12: -0.0187 REMARK 3 T13: 0.0472 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.5245 L22: 2.8860 REMARK 3 L33: 0.7536 L12: -0.4572 REMARK 3 L13: 0.4973 L23: 0.2585 REMARK 3 S TENSOR REMARK 3 S11: 0.0230 S12: 0.0408 S13: -0.0394 REMARK 3 S21: 0.0660 S22: -0.0799 S23: -0.0816 REMARK 3 S31: -0.1708 S32: 0.0254 S33: 0.0569 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|79 - 176} REMARK 3 ORIGIN FOR THE GROUP (A): 23.7190 -11.8610 17.6189 REMARK 3 T TENSOR REMARK 3 T11: -0.0392 T22: -0.0400 REMARK 3 T33: -0.0271 T12: -0.0158 REMARK 3 T13: -0.0024 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 0.5701 L22: 1.4776 REMARK 3 L33: 0.5126 L12: -0.2214 REMARK 3 L13: -0.1189 L23: -0.0311 REMARK 3 S TENSOR REMARK 3 S11: -0.0002 S12: -0.0427 S13: 0.0201 REMARK 3 S21: 0.1086 S22: 0.0072 S23: -0.0924 REMARK 3 S31: -0.0870 S32: -0.0144 S33: -0.0070 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|177 - 268} REMARK 3 ORIGIN FOR THE GROUP (A): 30.6460 -10.7744 2.2449 REMARK 3 T TENSOR REMARK 3 T11: 0.0024 T22: -0.0481 REMARK 3 T33: 0.0195 T12: -0.0038 REMARK 3 T13: 0.0528 T23: 0.0321 REMARK 3 L TENSOR REMARK 3 L11: 0.7750 L22: 1.4822 REMARK 3 L33: 0.6331 L12: -0.8037 REMARK 3 L13: -0.2400 L23: 0.2178 REMARK 3 S TENSOR REMARK 3 S11: 0.0926 S12: 0.0933 S13: 0.0961 REMARK 3 S21: -0.2594 S22: -0.0461 S23: -0.1524 REMARK 3 S31: -0.1320 S32: 0.0039 S33: -0.0464 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|269 - 294} REMARK 3 ORIGIN FOR THE GROUP (A): 43.7724 -23.2802 -7.8651 REMARK 3 T TENSOR REMARK 3 T11: 0.0177 T22: -0.0867 REMARK 3 T33: -0.0204 T12: 0.0291 REMARK 3 T13: 0.0949 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 2.2377 L22: 0.5148 REMARK 3 L33: 2.1896 L12: 0.1009 REMARK 3 L13: 0.0122 L23: -0.4526 REMARK 3 S TENSOR REMARK 3 S11: 0.1450 S12: 0.1313 S13: 0.0499 REMARK 3 S21: -0.2949 S22: 0.1088 S23: -0.2585 REMARK 3 S31: 0.0800 S32: 0.1330 S33: -0.2538 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {A|295 - 332} REMARK 3 ORIGIN FOR THE GROUP (A): 41.8101 -7.9061 -4.4486 REMARK 3 T TENSOR REMARK 3 T11: 0.0401 T22: -0.0580 REMARK 3 T33: 0.0730 T12: -0.0078 REMARK 3 T13: 0.1388 T23: 0.0354 REMARK 3 L TENSOR REMARK 3 L11: 0.0038 L22: 0.0895 REMARK 3 L33: 0.3716 L12: 0.0440 REMARK 3 L13: 0.6116 L23: -0.1229 REMARK 3 S TENSOR REMARK 3 S11: -0.0344 S12: 0.0551 S13: 0.0712 REMARK 3 S21: -0.1680 S22: 0.1157 S23: -0.2626 REMARK 3 S31: -0.1365 S32: 0.1456 S33: -0.0813 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: {A|333 - 353} REMARK 3 ORIGIN FOR THE GROUP (A): 32.3205 5.1595 5.2863 REMARK 3 T TENSOR REMARK 3 T11: 0.0285 T22: -0.0417 REMARK 3 T33: -0.0227 T12: -0.0221 REMARK 3 T13: 0.0305 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 2.3777 REMARK 3 L33: 0.0165 L12: 0.0736 REMARK 3 L13: -2.0957 L23: 0.8577 REMARK 3 S TENSOR REMARK 3 S11: 0.0036 S12: 0.0396 S13: -0.0033 REMARK 3 S21: -0.0260 S22: -0.0099 S23: -0.1490 REMARK 3 S31: -0.1872 S32: 0.1165 S33: 0.0063 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KQS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000079677. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30003 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 35.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.16300 REMARK 200 R SYM (I) : 0.16300 REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3CP6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NH4CL, PEG6000, 10% ETHYLENE REMARK 280 GLYCOL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.05000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 55.79500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.79500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.52500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.79500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 55.79500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 49.57500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.79500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.79500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 16.52500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 55.79500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.79500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 49.57500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 33.05000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 33.05000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 576 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 ARG A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLY A 3 REMARK 465 ASP A 4 REMARK 465 GLN A 5 REMARK 465 ASN A 6 REMARK 465 SER A 7 REMARK 465 ASP A 8 REMARK 465 ASP A 31 REMARK 465 GLU A 32 REMARK 465 MET A 33 REMARK 465 GLY A 34 REMARK 465 HIS A 35 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 9 CG1 CG2 REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 GLN A 180 CG CD OE1 NE2 REMARK 470 GLU A 222 CG CD OE1 OE2 REMARK 470 LYS A 223 CG CD CE NZ REMARK 470 LEU A 315 CG CD1 CD2 REMARK 470 ARG A 351 CD NE CZ NH1 NH2 REMARK 470 ARG A 352 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 124 -71.57 -101.12 REMARK 500 ALA A 178 59.88 -118.84 REMARK 500 THR A 201 -52.25 -130.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 103 OD1 REMARK 620 2 ASP A 107 OD2 86.5 REMARK 620 3 RIS A 405 O15 95.6 80.4 REMARK 620 4 HOH A 535 O 89.5 173.6 95.0 REMARK 620 5 HOH A 536 O 175.7 91.9 88.1 92.4 REMARK 620 6 HOH A 538 O 87.6 97.2 175.9 87.6 88.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 103 OD2 REMARK 620 2 ASP A 107 OD2 88.5 REMARK 620 3 RIS A 405 O15 92.1 79.0 REMARK 620 4 RIS A 405 O12 93.0 172.1 93.1 REMARK 620 5 HOH A 505 O 174.8 89.5 92.3 89.6 REMARK 620 6 HOH A 506 O 79.0 101.8 171.0 86.2 96.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 243 OD2 REMARK 620 2 RIS A 405 O11 89.5 REMARK 620 3 RIS A 405 O16 94.7 95.7 REMARK 620 4 HOH A 501 O 86.4 175.2 87.1 REMARK 620 5 HOH A 502 O 90.6 83.5 174.7 94.0 REMARK 620 6 HOH A 503 O 173.1 94.7 90.4 89.1 84.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPE A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RIS A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KFA RELATED DB: PDB REMARK 900 RELATED ID: 4KPD RELATED DB: PDB REMARK 900 RELATED ID: 4KPJ RELATED DB: PDB REMARK 900 RELATED ID: 4KQ5 RELATED DB: PDB REMARK 900 RELATED ID: 4KQU RELATED DB: PDB DBREF 4KQS A 1 353 UNP P14324 FPPS_HUMAN 67 419 SEQADV 4KQS MET A -21 UNP P14324 EXPRESSION TAG SEQADV 4KQS GLY A -20 UNP P14324 EXPRESSION TAG SEQADV 4KQS SER A -19 UNP P14324 EXPRESSION TAG SEQADV 4KQS SER A -18 UNP P14324 EXPRESSION TAG SEQADV 4KQS HIS A -17 UNP P14324 EXPRESSION TAG SEQADV 4KQS HIS A -16 UNP P14324 EXPRESSION TAG SEQADV 4KQS HIS A -15 UNP P14324 EXPRESSION TAG SEQADV 4KQS HIS A -14 UNP P14324 EXPRESSION TAG SEQADV 4KQS HIS A -13 UNP P14324 EXPRESSION TAG SEQADV 4KQS HIS A -12 UNP P14324 EXPRESSION TAG SEQADV 4KQS SER A -11 UNP P14324 EXPRESSION TAG SEQADV 4KQS SER A -10 UNP P14324 EXPRESSION TAG SEQADV 4KQS GLY A -9 UNP P14324 EXPRESSION TAG SEQADV 4KQS ARG A -8 UNP P14324 EXPRESSION TAG SEQADV 4KQS GLU A -7 UNP P14324 EXPRESSION TAG SEQADV 4KQS ASN A -6 UNP P14324 EXPRESSION TAG SEQADV 4KQS LEU A -5 UNP P14324 EXPRESSION TAG SEQADV 4KQS TYR A -4 UNP P14324 EXPRESSION TAG SEQADV 4KQS PHE A -3 UNP P14324 EXPRESSION TAG SEQADV 4KQS GLN A -2 UNP P14324 EXPRESSION TAG SEQADV 4KQS GLY A -1 UNP P14324 EXPRESSION TAG SEQADV 4KQS HIS A 0 UNP P14324 EXPRESSION TAG SEQADV 4KQS ALA A 204 UNP P14324 TYR 270 ENGINEERED MUTATION SEQRES 1 A 375 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 375 ARG GLU ASN LEU TYR PHE GLN GLY HIS MET ASN GLY ASP SEQRES 3 A 375 GLN ASN SER ASP VAL TYR ALA GLN GLU LYS GLN ASP PHE SEQRES 4 A 375 VAL GLN HIS PHE SER GLN ILE VAL ARG VAL LEU THR GLU SEQRES 5 A 375 ASP GLU MET GLY HIS PRO GLU ILE GLY ASP ALA ILE ALA SEQRES 6 A 375 ARG LEU LYS GLU VAL LEU GLU TYR ASN ALA ILE GLY GLY SEQRES 7 A 375 LYS TYR ASN ARG GLY LEU THR VAL VAL VAL ALA PHE ARG SEQRES 8 A 375 GLU LEU VAL GLU PRO ARG LYS GLN ASP ALA ASP SER LEU SEQRES 9 A 375 GLN ARG ALA TRP THR VAL GLY TRP CYS VAL GLU LEU LEU SEQRES 10 A 375 GLN ALA PHE PHE LEU VAL ALA ASP ASP ILE MET ASP SER SEQRES 11 A 375 SER LEU THR ARG ARG GLY GLN ILE CYS TRP TYR GLN LYS SEQRES 12 A 375 PRO GLY VAL GLY LEU ASP ALA ILE ASN ASP ALA ASN LEU SEQRES 13 A 375 LEU GLU ALA CYS ILE TYR ARG LEU LEU LYS LEU TYR CYS SEQRES 14 A 375 ARG GLU GLN PRO TYR TYR LEU ASN LEU ILE GLU LEU PHE SEQRES 15 A 375 LEU GLN SER SER TYR GLN THR GLU ILE GLY GLN THR LEU SEQRES 16 A 375 ASP LEU LEU THR ALA PRO GLN GLY ASN VAL ASP LEU VAL SEQRES 17 A 375 ARG PHE THR GLU LYS ARG TYR LYS SER ILE VAL LYS TYR SEQRES 18 A 375 LYS THR ALA PHE ALA SER PHE TYR LEU PRO ILE ALA ALA SEQRES 19 A 375 ALA MET TYR MET ALA GLY ILE ASP GLY GLU LYS GLU HIS SEQRES 20 A 375 ALA ASN ALA LYS LYS ILE LEU LEU GLU MET GLY GLU PHE SEQRES 21 A 375 PHE GLN ILE GLN ASP ASP TYR LEU ASP LEU PHE GLY ASP SEQRES 22 A 375 PRO SER VAL THR GLY LYS ILE GLY THR ASP ILE GLN ASP SEQRES 23 A 375 ASN LYS CYS SER TRP LEU VAL VAL GLN CYS LEU GLN ARG SEQRES 24 A 375 ALA THR PRO GLU GLN TYR GLN ILE LEU LYS GLU ASN TYR SEQRES 25 A 375 GLY GLN LYS GLU ALA GLU LYS VAL ALA ARG VAL LYS ALA SEQRES 26 A 375 LEU TYR GLU GLU LEU ASP LEU PRO ALA VAL PHE LEU GLN SEQRES 27 A 375 TYR GLU GLU ASP SER TYR SER HIS ILE MET ALA LEU ILE SEQRES 28 A 375 GLU GLN TYR ALA ALA PRO LEU PRO PRO ALA VAL PHE LEU SEQRES 29 A 375 GLY LEU ALA ARG LYS ILE TYR LYS ARG ARG LYS HET MG A 401 1 HET MG A 402 1 HET MG A 403 1 HET IPE A 404 14 HET RIS A 405 17 HETNAM MG MAGNESIUM ION HETNAM IPE 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE HETNAM RIS 1-HYDROXY-2-(3-PYRIDINYL)ETHYLIDENE BIS-PHOSPHONIC ACID HETSYN IPE ISOPENTENYL PYROPHOSPHATE HETSYN RIS RISEDRONATE FORMUL 2 MG 3(MG 2+) FORMUL 5 IPE C5 H12 O7 P2 FORMUL 6 RIS C7 H11 N O7 P2 FORMUL 7 HOH *418(H2 O) HELIX 1 1 VAL A 9 GLN A 19 1 11 HELIX 2 2 HIS A 20 THR A 29 1 10 HELIX 3 3 GLU A 30 GLU A 30 5 1 HELIX 4 4 PRO A 36 GLU A 37 5 2 HELIX 5 5 ILE A 38 ALA A 53 1 16 HELIX 6 6 TYR A 58 VAL A 72 1 15 HELIX 7 7 GLU A 73 GLN A 77 5 5 HELIX 8 8 ASP A 78 ASP A 107 1 30 HELIX 9 9 TRP A 118 LYS A 121 5 4 HELIX 10 10 VAL A 124 LEU A 126 5 3 HELIX 11 11 ASP A 127 ARG A 148 1 22 HELIX 12 12 TYR A 152 ALA A 178 1 27 HELIX 13 13 ASP A 184 PHE A 188 5 5 HELIX 14 14 THR A 189 THR A 201 1 13 HELIX 15 15 THR A 201 PHE A 206 1 6 HELIX 16 16 PHE A 206 ALA A 217 1 12 HELIX 17 17 GLY A 221 GLY A 250 1 30 HELIX 18 18 ASP A 251 GLY A 256 1 6 HELIX 19 19 SER A 268 ALA A 278 1 11 HELIX 20 20 THR A 279 TYR A 290 1 12 HELIX 21 21 GLU A 294 LEU A 308 1 15 HELIX 22 22 ASP A 309 ALA A 333 1 25 HELIX 23 23 PRO A 337 TYR A 349 1 13 SHEET 1 A 2 THR A 111 ARG A 112 0 SHEET 2 A 2 GLN A 115 ILE A 116 -1 O GLN A 115 N ARG A 112 LINK OD1 ASP A 103 MG MG A 401 1555 1555 2.03 LINK OD2 ASP A 103 MG MG A 402 1555 1555 2.12 LINK OD2 ASP A 107 MG MG A 401 1555 1555 2.14 LINK OD2 ASP A 107 MG MG A 402 1555 1555 2.15 LINK OD2 ASP A 243 MG MG A 403 1555 1555 2.23 LINK MG MG A 401 O15 RIS A 405 1555 1555 2.07 LINK MG MG A 401 O HOH A 535 1555 1555 2.00 LINK MG MG A 401 O HOH A 536 1555 1555 2.19 LINK MG MG A 401 O HOH A 538 1555 1555 2.08 LINK MG MG A 402 O15 RIS A 405 1555 1555 2.12 LINK MG MG A 402 O12 RIS A 405 1555 1555 2.13 LINK MG MG A 402 O HOH A 505 1555 1555 2.09 LINK MG MG A 402 O HOH A 506 1555 1555 2.07 LINK MG MG A 403 O11 RIS A 405 1555 1555 2.00 LINK MG MG A 403 O16 RIS A 405 1555 1555 2.16 LINK MG MG A 403 O HOH A 501 1555 1555 2.08 LINK MG MG A 403 O HOH A 502 1555 1555 2.19 LINK MG MG A 403 O HOH A 503 1555 1555 2.20 CISPEP 1 ALA A 334 PRO A 335 0 6.41 SITE 1 AC1 7 ASP A 103 ASP A 107 MG A 402 RIS A 405 SITE 2 AC1 7 HOH A 535 HOH A 536 HOH A 538 SITE 1 AC2 6 ASP A 103 ASP A 107 MG A 401 RIS A 405 SITE 2 AC2 6 HOH A 505 HOH A 506 SITE 1 AC3 5 ASP A 243 RIS A 405 HOH A 501 HOH A 502 SITE 2 AC3 5 HOH A 503 SITE 1 AC4 15 GLY A 56 LYS A 57 ARG A 60 GLN A 96 SITE 2 AC4 15 ARG A 113 SER A 205 PHE A 239 GLN A 240 SITE 3 AC4 15 RIS A 405 HOH A 514 HOH A 515 HOH A 518 SITE 4 AC4 15 HOH A 653 HOH A 803 HOH A 895 SITE 1 AC5 21 ASP A 103 ASP A 107 ARG A 112 GLN A 171 SITE 2 AC5 21 LYS A 200 THR A 201 ASP A 243 LYS A 257 SITE 3 AC5 21 MG A 401 MG A 402 MG A 403 IPE A 404 SITE 4 AC5 21 HOH A 501 HOH A 502 HOH A 503 HOH A 505 SITE 5 AC5 21 HOH A 506 HOH A 508 HOH A 535 HOH A 536 SITE 6 AC5 21 HOH A 537 CRYST1 111.590 111.590 66.100 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008961 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008961 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015129 0.00000