HEADER VIRAL PROTEIN 15-MAY-13 4KQZ TITLE STRUCTURE OF THE RECEPTOR BINDING DOMAIN (RBD) OF MERS-COV SPIKE COMPND MOL_ID: 1; COMPND 2 MOLECULE: S PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 367-606; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN BETACORONAVIRUS 2C EMC/2012; SOURCE 3 ORGANISM_TAXID: 1235996; SOURCE 4 GENE: S, SPIKE; SOURCE 5 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 6 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HIGH5; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PFAST-BAC1 KEYWDS CORE SUBDOMAIN, STRAND-DOMINATED RECEPTOR BINDING MOTIF, RECEPTOR KEYWDS 2 BINDING, CD26, VIRAL SURFACE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.LU,Y.HU,Q.WANG,J.QI,F.GAO,Y.LI,Y.ZHANG,W.ZHANG,Y.YUAN,J.BAO, AUTHOR 2 B.ZHANG,Y.SHI,J.YAN,G.F.GAO REVDAT 5 20-NOV-24 4KQZ 1 HETSYN REVDAT 4 29-JUL-20 4KQZ 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 18-DEC-19 4KQZ 1 JRNL SEQADV LINK REVDAT 2 14-AUG-13 4KQZ 1 JRNL REVDAT 1 10-JUL-13 4KQZ 0 JRNL AUTH G.LU,Y.HU,Q.WANG,J.QI,F.GAO,Y.LI,Y.ZHANG,W.ZHANG,Y.YUAN, JRNL AUTH 2 J.BAO,B.ZHANG,Y.SHI,J.YAN,G.F.GAO JRNL TITL MOLECULAR BASIS OF BINDING BETWEEN NOVEL HUMAN CORONAVIRUS JRNL TITL 2 MERS-COV AND ITS RECEPTOR CD26. JRNL REF NATURE V. 500 227 2013 JRNL REFN ESSN 1476-4687 JRNL PMID 23831647 JRNL DOI 10.1038/NATURE12328 REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 22479 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1153 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.8224 - 5.0262 0.98 2830 140 0.1992 0.2007 REMARK 3 2 5.0262 - 3.9900 1.00 2725 136 0.1571 0.1988 REMARK 3 3 3.9900 - 3.4858 1.00 2661 163 0.2003 0.2604 REMARK 3 4 3.4858 - 3.1671 1.00 2662 148 0.2193 0.2539 REMARK 3 5 3.1671 - 2.9402 1.00 2648 135 0.2380 0.2941 REMARK 3 6 2.9402 - 2.7668 1.00 2639 153 0.2623 0.3552 REMARK 3 7 2.7668 - 2.6283 1.00 2640 142 0.2917 0.3714 REMARK 3 8 2.6283 - 2.5139 0.96 2521 136 0.3133 0.4036 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 35.73 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 19.40210 REMARK 3 B22 (A**2) : -13.93500 REMARK 3 B33 (A**2) : -5.46700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3332 REMARK 3 ANGLE : 0.936 4540 REMARK 3 CHIRALITY : 0.064 530 REMARK 3 PLANARITY : 0.005 574 REMARK 3 DIHEDRAL : 14.965 1204 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 381:456) REMARK 3 ORIGIN FOR THE GROUP (A): 22.7931 -8.5234 -10.1960 REMARK 3 T TENSOR REMARK 3 T11: 0.2813 T22: 0.2979 REMARK 3 T33: 0.2715 T12: -0.0318 REMARK 3 T13: 0.0618 T23: 0.0359 REMARK 3 L TENSOR REMARK 3 L11: 1.6561 L22: 1.9728 REMARK 3 L33: 1.1408 L12: 0.3829 REMARK 3 L13: 0.9528 L23: 0.1406 REMARK 3 S TENSOR REMARK 3 S11: -0.0795 S12: 0.0718 S13: 0.1112 REMARK 3 S21: -0.2036 S22: 0.0054 S23: 0.0362 REMARK 3 S31: -0.2991 S32: 0.0609 S33: -0.0006 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 457:495) REMARK 3 ORIGIN FOR THE GROUP (A): 18.8761 -16.1764 -7.9012 REMARK 3 T TENSOR REMARK 3 T11: 0.2649 T22: 0.3235 REMARK 3 T33: 0.3143 T12: 0.0373 REMARK 3 T13: 0.0249 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 0.8993 L22: 2.0129 REMARK 3 L33: 0.0587 L12: 1.3540 REMARK 3 L13: -0.1813 L23: -0.3327 REMARK 3 S TENSOR REMARK 3 S11: -0.0584 S12: -0.0870 S13: 0.1559 REMARK 3 S21: -0.0376 S22: 0.1788 S23: -0.0129 REMARK 3 S31: -0.3632 S32: -0.0468 S33: 0.0006 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 496:562) REMARK 3 ORIGIN FOR THE GROUP (A): 24.9837 -34.9649 -8.2366 REMARK 3 T TENSOR REMARK 3 T11: 0.2153 T22: 0.3945 REMARK 3 T33: 0.3594 T12: -0.0158 REMARK 3 T13: 0.0344 T23: -0.0341 REMARK 3 L TENSOR REMARK 3 L11: 1.1572 L22: 1.7948 REMARK 3 L33: 1.0138 L12: -0.6459 REMARK 3 L13: 0.5331 L23: -0.0023 REMARK 3 S TENSOR REMARK 3 S11: 0.0036 S12: 0.0473 S13: -0.0159 REMARK 3 S21: -0.2153 S22: 0.0999 S23: -0.0615 REMARK 3 S31: -0.0559 S32: 0.0866 S33: 0.0007 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 563:588) REMARK 3 ORIGIN FOR THE GROUP (A): 25.1136 -5.9246 -8.9340 REMARK 3 T TENSOR REMARK 3 T11: 0.4276 T22: 0.4243 REMARK 3 T33: 0.4072 T12: -0.0810 REMARK 3 T13: 0.0788 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.3723 L22: 2.2057 REMARK 3 L33: 1.2873 L12: -0.1998 REMARK 3 L13: 0.0975 L23: -0.9235 REMARK 3 S TENSOR REMARK 3 S11: -0.3941 S12: 0.0991 S13: 0.3023 REMARK 3 S21: -0.5334 S22: 0.0824 S23: 0.0392 REMARK 3 S31: -0.6907 S32: 0.2562 S33: -0.0515 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 381:410) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3397 -60.9243 -22.2293 REMARK 3 T TENSOR REMARK 3 T11: 0.7714 T22: 0.4584 REMARK 3 T33: 0.6034 T12: -0.1088 REMARK 3 T13: -0.0351 T23: -0.1202 REMARK 3 L TENSOR REMARK 3 L11: 0.5743 L22: 0.6014 REMARK 3 L33: 0.8888 L12: -0.0614 REMARK 3 L13: 0.4677 L23: 0.5062 REMARK 3 S TENSOR REMARK 3 S11: -0.2464 S12: 0.3185 S13: -0.2259 REMARK 3 S21: -0.1162 S22: 0.0776 S23: 0.2859 REMARK 3 S31: 1.0062 S32: -0.2169 S33: -0.0057 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 411:447) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5191 -59.6594 -12.2305 REMARK 3 T TENSOR REMARK 3 T11: 0.6505 T22: 0.3353 REMARK 3 T33: 0.4527 T12: -0.0091 REMARK 3 T13: 0.0463 T23: -0.0392 REMARK 3 L TENSOR REMARK 3 L11: 0.6497 L22: 0.4912 REMARK 3 L33: 0.7764 L12: -0.2004 REMARK 3 L13: -0.7114 L23: 0.1054 REMARK 3 S TENSOR REMARK 3 S11: -0.3737 S12: -0.1902 S13: -0.0619 REMARK 3 S21: 0.0466 S22: 0.1083 S23: 0.0692 REMARK 3 S31: 0.6556 S32: 0.0540 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 448:462) REMARK 3 ORIGIN FOR THE GROUP (A): 25.3044 -49.2632 -18.1309 REMARK 3 T TENSOR REMARK 3 T11: 0.5167 T22: 0.5762 REMARK 3 T33: 0.4331 T12: 0.0991 REMARK 3 T13: 0.0215 T23: -0.0934 REMARK 3 L TENSOR REMARK 3 L11: 0.1906 L22: 0.1181 REMARK 3 L33: 0.1435 L12: 0.1123 REMARK 3 L13: -0.1131 L23: 0.0082 REMARK 3 S TENSOR REMARK 3 S11: 0.0183 S12: 0.0330 S13: 0.2617 REMARK 3 S21: 0.3861 S22: -0.0047 S23: -0.7036 REMARK 3 S31: 0.0860 S32: 0.4882 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 463:476) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5870 -44.9053 -18.3762 REMARK 3 T TENSOR REMARK 3 T11: 0.4261 T22: 0.3755 REMARK 3 T33: 0.4013 T12: 0.0254 REMARK 3 T13: 0.0142 T23: -0.0608 REMARK 3 L TENSOR REMARK 3 L11: 0.1338 L22: 0.0991 REMARK 3 L33: 0.1850 L12: 0.1249 REMARK 3 L13: -0.0927 L23: -0.0598 REMARK 3 S TENSOR REMARK 3 S11: 0.2482 S12: -0.0680 S13: -0.3162 REMARK 3 S21: 0.0370 S22: -0.1654 S23: 0.4583 REMARK 3 S31: -0.0083 S32: 0.0363 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 477:495) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8870 -64.7286 -22.4485 REMARK 3 T TENSOR REMARK 3 T11: 1.0419 T22: 0.4630 REMARK 3 T33: 0.6979 T12: 0.1061 REMARK 3 T13: 0.0790 T23: -0.0818 REMARK 3 L TENSOR REMARK 3 L11: 1.1169 L22: 0.3892 REMARK 3 L33: 0.2160 L12: 0.2733 REMARK 3 L13: 0.4362 L23: 0.0136 REMARK 3 S TENSOR REMARK 3 S11: -0.1452 S12: 0.0076 S13: -0.7281 REMARK 3 S21: -0.2227 S22: 0.0139 S23: -0.0343 REMARK 3 S31: 0.7215 S32: 0.0278 S33: -0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 496:515) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5889 -36.4345 -32.5903 REMARK 3 T TENSOR REMARK 3 T11: 0.9058 T22: 0.5310 REMARK 3 T33: 0.4404 T12: 0.0750 REMARK 3 T13: 0.1337 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.7573 L22: 0.3246 REMARK 3 L33: 0.8897 L12: -0.1432 REMARK 3 L13: -0.6551 L23: 0.2344 REMARK 3 S TENSOR REMARK 3 S11: 0.5890 S12: 0.3724 S13: 0.2707 REMARK 3 S21: -1.0406 S22: -0.2862 S23: -0.2341 REMARK 3 S31: -0.4953 S32: 0.1819 S33: 0.0038 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 516:539) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6730 -45.4630 -31.7942 REMARK 3 T TENSOR REMARK 3 T11: 0.6546 T22: 0.6471 REMARK 3 T33: 0.5494 T12: 0.0774 REMARK 3 T13: -0.0331 T23: -0.0727 REMARK 3 L TENSOR REMARK 3 L11: 0.3397 L22: 0.4161 REMARK 3 L33: 0.5692 L12: -0.1187 REMARK 3 L13: 0.2292 L23: -0.3755 REMARK 3 S TENSOR REMARK 3 S11: 0.3798 S12: 0.3265 S13: 0.0168 REMARK 3 S21: -0.7027 S22: -0.0941 S23: 0.1906 REMARK 3 S31: 0.0702 S32: 0.0278 S33: -0.0000 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 540:552) REMARK 3 ORIGIN FOR THE GROUP (A): 13.9437 -34.9224 -40.3357 REMARK 3 T TENSOR REMARK 3 T11: 1.3924 T22: 0.8160 REMARK 3 T33: 0.8567 T12: 0.0032 REMARK 3 T13: 0.1632 T23: 0.1641 REMARK 3 L TENSOR REMARK 3 L11: 0.0468 L22: 0.1269 REMARK 3 L33: 0.3851 L12: -0.0353 REMARK 3 L13: -0.1049 L23: 0.2039 REMARK 3 S TENSOR REMARK 3 S11: 0.0175 S12: -0.1953 S13: 1.0646 REMARK 3 S21: -0.2406 S22: 0.5728 S23: 0.3230 REMARK 3 S31: -0.5370 S32: 0.6720 S33: 0.0214 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 553:576) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2127 -53.2310 -25.7438 REMARK 3 T TENSOR REMARK 3 T11: 0.6530 T22: 0.3936 REMARK 3 T33: 0.4249 T12: 0.0335 REMARK 3 T13: 0.0971 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 1.2521 L22: 0.6356 REMARK 3 L33: 1.3226 L12: 0.8932 REMARK 3 L13: 0.5247 L23: 0.5237 REMARK 3 S TENSOR REMARK 3 S11: -0.1328 S12: 0.0277 S13: 0.2131 REMARK 3 S21: -0.7962 S22: 0.3123 S23: 0.0173 REMARK 3 S31: 0.4532 S32: 0.1123 S33: 0.0027 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 577:588) REMARK 3 ORIGIN FOR THE GROUP (A): -3.3481 -59.3314 -8.1682 REMARK 3 T TENSOR REMARK 3 T11: 0.8802 T22: 0.6597 REMARK 3 T33: 0.8626 T12: -0.2000 REMARK 3 T13: 0.2896 T23: -0.2115 REMARK 3 L TENSOR REMARK 3 L11: 0.9046 L22: 1.0181 REMARK 3 L33: 1.0457 L12: -0.3168 REMARK 3 L13: 0.9696 L23: -0.2163 REMARK 3 S TENSOR REMARK 3 S11: 0.0785 S12: -0.5881 S13: 0.2645 REMARK 3 S21: 0.2218 S22: -0.1961 S23: 1.2200 REMARK 3 S31: 0.5741 S32: -1.0166 S33: 0.1870 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KQZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079684. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03818 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22536 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : 0.09500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.6140 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : 0.65900 REMARK 200 R SYM FOR SHELL (I) : 0.65900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.308 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M AMMONIUM TARTRATE DIBASIC PH7.0, REMARK 280 12% PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.48850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.96250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.23650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.96250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.48850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.23650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 362 REMARK 465 ASP A 363 REMARK 465 GLY A 364 REMARK 465 ILE A 365 REMARK 465 GLN A 366 REMARK 465 GLU A 367 REMARK 465 ALA A 368 REMARK 465 LYS A 369 REMARK 465 PRO A 370 REMARK 465 SER A 371 REMARK 465 GLY A 372 REMARK 465 SER A 373 REMARK 465 VAL A 374 REMARK 465 VAL A 375 REMARK 465 GLU A 376 REMARK 465 GLN A 377 REMARK 465 ALA A 378 REMARK 465 GLU A 379 REMARK 465 GLY A 380 REMARK 465 GLU A 589 REMARK 465 PHE A 590 REMARK 465 ALA A 591 REMARK 465 ASN A 592 REMARK 465 ASP A 593 REMARK 465 THR A 594 REMARK 465 LYS A 595 REMARK 465 ILE A 596 REMARK 465 ALA A 597 REMARK 465 SER A 598 REMARK 465 GLN A 599 REMARK 465 LEU A 600 REMARK 465 GLY A 601 REMARK 465 ASN A 602 REMARK 465 CYS A 603 REMARK 465 VAL A 604 REMARK 465 GLU A 605 REMARK 465 TYR A 606 REMARK 465 HIS A 607 REMARK 465 HIS A 608 REMARK 465 HIS A 609 REMARK 465 HIS A 610 REMARK 465 HIS A 611 REMARK 465 HIS A 612 REMARK 465 ALA B 362 REMARK 465 ASP B 363 REMARK 465 GLY B 364 REMARK 465 ILE B 365 REMARK 465 GLN B 366 REMARK 465 GLU B 367 REMARK 465 ALA B 368 REMARK 465 LYS B 369 REMARK 465 PRO B 370 REMARK 465 SER B 371 REMARK 465 GLY B 372 REMARK 465 SER B 373 REMARK 465 VAL B 374 REMARK 465 VAL B 375 REMARK 465 GLU B 376 REMARK 465 GLN B 377 REMARK 465 ALA B 378 REMARK 465 GLU B 379 REMARK 465 GLY B 380 REMARK 465 GLU B 589 REMARK 465 PHE B 590 REMARK 465 ALA B 591 REMARK 465 ASN B 592 REMARK 465 ASP B 593 REMARK 465 THR B 594 REMARK 465 LYS B 595 REMARK 465 ILE B 596 REMARK 465 ALA B 597 REMARK 465 SER B 598 REMARK 465 GLN B 599 REMARK 465 LEU B 600 REMARK 465 GLY B 601 REMARK 465 ASN B 602 REMARK 465 CYS B 603 REMARK 465 VAL B 604 REMARK 465 GLU B 605 REMARK 465 TYR B 606 REMARK 465 HIS B 607 REMARK 465 HIS B 608 REMARK 465 HIS B 609 REMARK 465 HIS B 610 REMARK 465 HIS B 611 REMARK 465 HIS B 612 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 398 O HOH A 805 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 460 CB - CA - C ANGL. DEV. = 17.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 382 113.01 72.39 REMARK 500 SER A 435 29.58 -145.91 REMARK 500 SER A 460 177.66 77.31 REMARK 500 ALA A 461 -84.73 -78.42 REMARK 500 GLU B 382 112.99 66.08 REMARK 500 ASN B 406 65.36 39.30 REMARK 500 PHE B 423 84.26 -151.50 REMARK 500 SER B 459 -133.98 53.02 REMARK 500 THR B 579 -85.37 -88.42 REMARK 500 ASN B 582 75.49 -68.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KR0 RELATED DB: PDB DBREF 4KQZ A 367 606 UNP K0BRG7 K0BRG7_9BETC 367 606 DBREF 4KQZ B 367 606 UNP K0BRG7 K0BRG7_9BETC 367 606 SEQADV 4KQZ ALA A 362 UNP K0BRG7 EXPRESSION TAG SEQADV 4KQZ ASP A 363 UNP K0BRG7 EXPRESSION TAG SEQADV 4KQZ GLY A 364 UNP K0BRG7 EXPRESSION TAG SEQADV 4KQZ ILE A 365 UNP K0BRG7 EXPRESSION TAG SEQADV 4KQZ GLN A 366 UNP K0BRG7 EXPRESSION TAG SEQADV 4KQZ HIS A 607 UNP K0BRG7 EXPRESSION TAG SEQADV 4KQZ HIS A 608 UNP K0BRG7 EXPRESSION TAG SEQADV 4KQZ HIS A 609 UNP K0BRG7 EXPRESSION TAG SEQADV 4KQZ HIS A 610 UNP K0BRG7 EXPRESSION TAG SEQADV 4KQZ HIS A 611 UNP K0BRG7 EXPRESSION TAG SEQADV 4KQZ HIS A 612 UNP K0BRG7 EXPRESSION TAG SEQADV 4KQZ ALA B 362 UNP K0BRG7 EXPRESSION TAG SEQADV 4KQZ ASP B 363 UNP K0BRG7 EXPRESSION TAG SEQADV 4KQZ GLY B 364 UNP K0BRG7 EXPRESSION TAG SEQADV 4KQZ ILE B 365 UNP K0BRG7 EXPRESSION TAG SEQADV 4KQZ GLN B 366 UNP K0BRG7 EXPRESSION TAG SEQADV 4KQZ HIS B 607 UNP K0BRG7 EXPRESSION TAG SEQADV 4KQZ HIS B 608 UNP K0BRG7 EXPRESSION TAG SEQADV 4KQZ HIS B 609 UNP K0BRG7 EXPRESSION TAG SEQADV 4KQZ HIS B 610 UNP K0BRG7 EXPRESSION TAG SEQADV 4KQZ HIS B 611 UNP K0BRG7 EXPRESSION TAG SEQADV 4KQZ HIS B 612 UNP K0BRG7 EXPRESSION TAG SEQRES 1 A 251 ALA ASP GLY ILE GLN GLU ALA LYS PRO SER GLY SER VAL SEQRES 2 A 251 VAL GLU GLN ALA GLU GLY VAL GLU CYS ASP PHE SER PRO SEQRES 3 A 251 LEU LEU SER GLY THR PRO PRO GLN VAL TYR ASN PHE LYS SEQRES 4 A 251 ARG LEU VAL PHE THR ASN CYS ASN TYR ASN LEU THR LYS SEQRES 5 A 251 LEU LEU SER LEU PHE SER VAL ASN ASP PHE THR CYS SER SEQRES 6 A 251 GLN ILE SER PRO ALA ALA ILE ALA SER ASN CYS TYR SER SEQRES 7 A 251 SER LEU ILE LEU ASP TYR PHE SER TYR PRO LEU SER MET SEQRES 8 A 251 LYS SER ASP LEU SER VAL SER SER ALA GLY PRO ILE SER SEQRES 9 A 251 GLN PHE ASN TYR LYS GLN SER PHE SER ASN PRO THR CYS SEQRES 10 A 251 LEU ILE LEU ALA THR VAL PRO HIS ASN LEU THR THR ILE SEQRES 11 A 251 THR LYS PRO LEU LYS TYR SER TYR ILE ASN LYS CYS SER SEQRES 12 A 251 ARG LEU LEU SER ASP ASP ARG THR GLU VAL PRO GLN LEU SEQRES 13 A 251 VAL ASN ALA ASN GLN TYR SER PRO CYS VAL SER ILE VAL SEQRES 14 A 251 PRO SER THR VAL TRP GLU ASP GLY ASP TYR TYR ARG LYS SEQRES 15 A 251 GLN LEU SER PRO LEU GLU GLY GLY GLY TRP LEU VAL ALA SEQRES 16 A 251 SER GLY SER THR VAL ALA MET THR GLU GLN LEU GLN MET SEQRES 17 A 251 GLY PHE GLY ILE THR VAL GLN TYR GLY THR ASP THR ASN SEQRES 18 A 251 SER VAL CYS PRO LYS LEU GLU PHE ALA ASN ASP THR LYS SEQRES 19 A 251 ILE ALA SER GLN LEU GLY ASN CYS VAL GLU TYR HIS HIS SEQRES 20 A 251 HIS HIS HIS HIS SEQRES 1 B 251 ALA ASP GLY ILE GLN GLU ALA LYS PRO SER GLY SER VAL SEQRES 2 B 251 VAL GLU GLN ALA GLU GLY VAL GLU CYS ASP PHE SER PRO SEQRES 3 B 251 LEU LEU SER GLY THR PRO PRO GLN VAL TYR ASN PHE LYS SEQRES 4 B 251 ARG LEU VAL PHE THR ASN CYS ASN TYR ASN LEU THR LYS SEQRES 5 B 251 LEU LEU SER LEU PHE SER VAL ASN ASP PHE THR CYS SER SEQRES 6 B 251 GLN ILE SER PRO ALA ALA ILE ALA SER ASN CYS TYR SER SEQRES 7 B 251 SER LEU ILE LEU ASP TYR PHE SER TYR PRO LEU SER MET SEQRES 8 B 251 LYS SER ASP LEU SER VAL SER SER ALA GLY PRO ILE SER SEQRES 9 B 251 GLN PHE ASN TYR LYS GLN SER PHE SER ASN PRO THR CYS SEQRES 10 B 251 LEU ILE LEU ALA THR VAL PRO HIS ASN LEU THR THR ILE SEQRES 11 B 251 THR LYS PRO LEU LYS TYR SER TYR ILE ASN LYS CYS SER SEQRES 12 B 251 ARG LEU LEU SER ASP ASP ARG THR GLU VAL PRO GLN LEU SEQRES 13 B 251 VAL ASN ALA ASN GLN TYR SER PRO CYS VAL SER ILE VAL SEQRES 14 B 251 PRO SER THR VAL TRP GLU ASP GLY ASP TYR TYR ARG LYS SEQRES 15 B 251 GLN LEU SER PRO LEU GLU GLY GLY GLY TRP LEU VAL ALA SEQRES 16 B 251 SER GLY SER THR VAL ALA MET THR GLU GLN LEU GLN MET SEQRES 17 B 251 GLY PHE GLY ILE THR VAL GLN TYR GLY THR ASP THR ASN SEQRES 18 B 251 SER VAL CYS PRO LYS LEU GLU PHE ALA ASN ASP THR LYS SEQRES 19 B 251 ILE ALA SER GLN LEU GLY ASN CYS VAL GLU TYR HIS HIS SEQRES 20 B 251 HIS HIS HIS HIS MODRES 4KQZ ASN A 410 ASN GLYCOSYLATION SITE MODRES 4KQZ ASN B 410 ASN GLYCOSYLATION SITE HET NAG A 701 14 HET NAG B 701 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 5 HOH *63(H2 O) HELIX 1 1 PHE A 385 SER A 390 1 6 HELIX 2 2 GLN A 395 PHE A 399 5 5 HELIX 3 3 ASN A 410 SER A 416 1 7 HELIX 4 4 SER A 429 ALA A 434 1 6 HELIX 5 5 PRO A 449 SER A 457 5 9 HELIX 6 6 GLY A 462 ASN A 468 1 7 HELIX 7 7 SER A 524 ILE A 529 5 6 HELIX 8 8 SER A 546 GLY A 550 5 5 HELIX 9 9 PHE B 385 SER B 390 1 6 HELIX 10 10 GLN B 395 PHE B 399 5 5 HELIX 11 11 ASN B 410 LEU B 417 1 8 HELIX 12 12 SER B 429 ASN B 436 1 8 HELIX 13 13 PRO B 449 MET B 452 5 4 HELIX 14 14 LYS B 453 VAL B 458 1 6 HELIX 15 15 SER B 459 ALA B 461 5 3 HELIX 16 16 GLY B 462 ASN B 468 1 7 HELIX 17 17 SER B 524 VAL B 530 5 7 SHEET 1 A 5 LYS A 400 PHE A 404 0 SHEET 2 A 5 SER A 440 SER A 447 -1 O LEU A 443 N LEU A 402 SHEET 3 A 5 GLN A 568 GLN A 576 -1 O GLY A 572 N ASP A 444 SHEET 4 A 5 THR A 477 THR A 483 -1 N ALA A 482 O MET A 569 SHEET 5 A 5 SER A 419 SER A 426 -1 N ASP A 422 O LEU A 481 SHEET 1 B 2 CYS A 407 TYR A 409 0 SHEET 2 B 2 VAL A 584 PRO A 586 1 O CYS A 585 N CYS A 407 SHEET 1 C 4 GLU A 513 PRO A 515 0 SHEET 2 C 4 LYS A 496 LEU A 506 -1 N ARG A 505 O VAL A 514 SHEET 3 C 4 TRP A 553 ALA A 562 -1 O VAL A 555 N SER A 504 SHEET 4 C 4 TYR A 540 GLN A 544 -1 N TYR A 541 O ALA A 556 SHEET 1 D 5 LYS B 400 PHE B 404 0 SHEET 2 D 5 SER B 440 SER B 447 -1 O LEU B 443 N LEU B 402 SHEET 3 D 5 GLN B 568 GLN B 576 -1 O GLY B 572 N ASP B 444 SHEET 4 D 5 THR B 477 THR B 483 -1 N ALA B 482 O MET B 569 SHEET 5 D 5 SER B 419 SER B 426 -1 N THR B 424 O LEU B 479 SHEET 1 E 2 ASN B 408 TYR B 409 0 SHEET 2 E 2 CYS B 585 PRO B 586 1 O CYS B 585 N TYR B 409 SHEET 1 F 4 GLU B 513 PRO B 515 0 SHEET 2 F 4 LYS B 496 LEU B 506 -1 N ARG B 505 O VAL B 514 SHEET 3 F 4 TRP B 553 ALA B 562 -1 O TRP B 553 N LEU B 506 SHEET 4 F 4 TYR B 540 GLN B 544 -1 N TYR B 541 O ALA B 556 SSBOND 1 CYS A 383 CYS A 407 1555 1555 2.04 SSBOND 2 CYS A 425 CYS A 478 1555 1555 2.04 SSBOND 3 CYS A 437 CYS A 585 1555 1555 2.05 SSBOND 4 CYS A 503 CYS A 526 1555 1555 2.04 SSBOND 5 CYS B 383 CYS B 407 1555 1555 2.04 SSBOND 6 CYS B 425 CYS B 478 1555 1555 2.04 SSBOND 7 CYS B 437 CYS B 585 1555 1555 2.05 SSBOND 8 CYS B 503 CYS B 526 1555 1555 2.03 LINK ND2 ASN A 410 C1 NAG A 701 1555 1555 1.45 LINK ND2 ASN B 410 C1 NAG B 701 1555 1555 1.45 CRYST1 46.977 108.473 125.925 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021287 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009219 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007941 0.00000