HEADER LIGASE/RNA 16-MAY-13 4KR3 TITLE GLYCYL-TRNA SYNTHETASE MUTANT E71G IN COMPLEX WITH TRNA-GLY COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCINE--TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 114-739; COMPND 5 SYNONYM: DIADENOSINE TETRAPHOSPHATE SYNTHETASE, AP-4-A SYNTHETASE, COMPND 6 GLYCYL-TRNA SYNTHETASE, GLYRS; COMPND 7 EC: 6.1.1.14; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: GLY-TRNA-CCC; COMPND 12 CHAIN: C; COMPND 13 SYNONYM: TRNA-GLY; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GARS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B(+); SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 OTHER_DETAILS: RNA IS IN-VITRO TRANSCRIBED. KEYWDS ROSSMANN FOLD, AMINOACYLATION, TRNA-GLY, LIGASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.QIN,Z.HAO,Q.TIAN,Z.ZHANG,C.ZHOU,W.XIE REVDAT 3 20-MAR-24 4KR3 1 REMARK SEQADV LINK REVDAT 2 13-AUG-14 4KR3 1 JRNL REVDAT 1 21-MAY-14 4KR3 0 JRNL AUTH X.QIN,Z.HAO,Q.TIAN,Z.ZHANG,C.ZHOU,W.XIE JRNL TITL COCRYSTAL STRUCTURES OF GLYCYL-TRNA SYNTHETASE IN COMPLEX JRNL TITL 2 WITH TRNA SUGGEST MULTIPLE CONFORMATIONAL STATES IN JRNL TITL 3 GLYCYLATION JRNL REF J.BIOL.CHEM. V. 289 20359 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24898252 JRNL DOI 10.1074/JBC.M114.557249 REMARK 2 REMARK 2 RESOLUTION. 3.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.1 REMARK 3 NUMBER OF REFLECTIONS : 14062 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 700 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.4220 - 5.5282 0.86 2726 113 0.2309 0.2789 REMARK 3 2 5.5282 - 4.3899 0.89 2641 171 0.2287 0.2845 REMARK 3 3 4.3899 - 3.8355 0.90 2646 154 0.2306 0.2915 REMARK 3 4 3.8355 - 3.4851 0.94 2807 141 0.2652 0.3019 REMARK 3 5 3.4851 - 3.2355 0.86 2542 121 0.2675 0.3380 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 82.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 85.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 5420 REMARK 3 ANGLE : 0.875 7688 REMARK 3 CHIRALITY : 0.058 904 REMARK 3 PLANARITY : 0.004 733 REMARK 3 DIHEDRAL : 19.774 2279 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 65:304) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6972 -5.4758 87.3477 REMARK 3 T TENSOR REMARK 3 T11: 0.5226 T22: 0.5109 REMARK 3 T33: 0.5503 T12: 0.0879 REMARK 3 T13: -0.0696 T23: 0.0220 REMARK 3 L TENSOR REMARK 3 L11: 2.6505 L22: 1.6035 REMARK 3 L33: 0.7079 L12: 1.1150 REMARK 3 L13: -0.5655 L23: -0.1434 REMARK 3 S TENSOR REMARK 3 S11: 0.1166 S12: -0.3285 S13: -0.0992 REMARK 3 S21: 0.2156 S22: 0.0044 S23: -0.0891 REMARK 3 S31: 0.0913 S32: 0.1372 S33: -0.1028 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 305:412) REMARK 3 ORIGIN FOR THE GROUP (A): 20.4008 -18.0813 76.9399 REMARK 3 T TENSOR REMARK 3 T11: 0.4726 T22: 0.4998 REMARK 3 T33: 0.6489 T12: 0.0192 REMARK 3 T13: 0.1138 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 5.3905 L22: 6.1668 REMARK 3 L33: 3.5674 L12: -1.1786 REMARK 3 L13: 4.1301 L23: 0.2357 REMARK 3 S TENSOR REMARK 3 S11: 0.0967 S12: -0.1489 S13: -1.0838 REMARK 3 S21: -0.0886 S22: 0.3256 S23: 0.0622 REMARK 3 S31: 0.4320 S32: 0.0579 S33: -0.3369 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 413:441) REMARK 3 ORIGIN FOR THE GROUP (A): -4.7739 -33.7817 88.1128 REMARK 3 T TENSOR REMARK 3 T11: 0.7405 T22: 0.5374 REMARK 3 T33: 1.0602 T12: 0.1122 REMARK 3 T13: -0.0473 T23: 0.0965 REMARK 3 L TENSOR REMARK 3 L11: 1.9589 L22: 8.6393 REMARK 3 L33: 5.0856 L12: -0.0107 REMARK 3 L13: 0.8195 L23: 2.6882 REMARK 3 S TENSOR REMARK 3 S11: 0.2883 S12: 0.1063 S13: -0.1042 REMARK 3 S21: 0.5199 S22: -0.3635 S23: -0.7789 REMARK 3 S31: 0.7873 S32: 0.4444 S33: 0.0412 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 507:595) REMARK 3 ORIGIN FOR THE GROUP (A): 10.8130 2.8689 70.5900 REMARK 3 T TENSOR REMARK 3 T11: 0.3972 T22: 0.5549 REMARK 3 T33: 0.5202 T12: 0.0233 REMARK 3 T13: -0.0273 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 1.5084 L22: 2.2327 REMARK 3 L33: 1.0060 L12: 0.3655 REMARK 3 L13: 0.2968 L23: 1.0137 REMARK 3 S TENSOR REMARK 3 S11: -0.1099 S12: 0.3121 S13: 0.1519 REMARK 3 S21: -0.1595 S22: 0.1678 S23: 0.0390 REMARK 3 S31: -0.1297 S32: 0.0564 S33: -0.0840 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 596:678) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5449 14.4199 55.4511 REMARK 3 T TENSOR REMARK 3 T11: 0.7398 T22: 0.9617 REMARK 3 T33: 0.6455 T12: -0.1715 REMARK 3 T13: -0.0547 T23: 0.0196 REMARK 3 L TENSOR REMARK 3 L11: 3.8809 L22: 3.5905 REMARK 3 L33: 3.5962 L12: -0.1634 REMARK 3 L13: 1.3583 L23: -1.1664 REMARK 3 S TENSOR REMARK 3 S11: -0.0697 S12: 1.0085 S13: 0.3147 REMARK 3 S21: -0.8751 S22: 0.1338 S23: 0.3950 REMARK 3 S31: 0.7606 S32: -0.5063 S33: -0.1076 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN C AND RESSEQ 1:4) REMARK 3 ORIGIN FOR THE GROUP (A): 25.1738 4.6191 105.9053 REMARK 3 T TENSOR REMARK 3 T11: 1.6555 T22: 1.4193 REMARK 3 T33: 0.9243 T12: -0.2306 REMARK 3 T13: -0.2745 T23: 0.1887 REMARK 3 L TENSOR REMARK 3 L11: 8.3600 L22: 6.5947 REMARK 3 L33: 3.6219 L12: 7.4253 REMARK 3 L13: -5.5049 L23: -4.8889 REMARK 3 S TENSOR REMARK 3 S11: -0.3173 S12: 0.2534 S13: 0.8251 REMARK 3 S21: -0.3436 S22: 0.2748 S23: 0.1518 REMARK 3 S31: 0.4922 S32: -0.9925 S33: 0.0301 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN C AND RESSEQ 5:20) REMARK 3 ORIGIN FOR THE GROUP (A): 25.9542 27.1927 95.6875 REMARK 3 T TENSOR REMARK 3 T11: 1.1161 T22: 0.8914 REMARK 3 T33: 0.8801 T12: -0.1066 REMARK 3 T13: -0.1169 T23: -0.1525 REMARK 3 L TENSOR REMARK 3 L11: 4.6711 L22: 2.2302 REMARK 3 L33: 2.0453 L12: 2.9418 REMARK 3 L13: 3.2947 L23: 0.3206 REMARK 3 S TENSOR REMARK 3 S11: 0.0432 S12: -1.0084 S13: 0.1360 REMARK 3 S21: 1.1469 S22: -0.1643 S23: -0.5769 REMARK 3 S31: -1.1021 S32: -0.2631 S33: 0.1972 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN C AND RESSEQ 21:58) REMARK 3 ORIGIN FOR THE GROUP (A): 20.3833 32.2458 84.3644 REMARK 3 T TENSOR REMARK 3 T11: 0.5116 T22: 0.6861 REMARK 3 T33: 0.8643 T12: -0.0188 REMARK 3 T13: -0.0137 T23: -0.1233 REMARK 3 L TENSOR REMARK 3 L11: 2.1155 L22: 4.4794 REMARK 3 L33: 0.3364 L12: -0.1344 REMARK 3 L13: 0.2809 L23: -0.0416 REMARK 3 S TENSOR REMARK 3 S11: 0.0123 S12: -0.2907 S13: 0.9752 REMARK 3 S21: 0.3508 S22: 0.3728 S23: -0.2226 REMARK 3 S31: -0.5445 S32: 0.0888 S33: -0.3327 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN C AND RESSEQ 59:72) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7201 14.7879 103.8200 REMARK 3 T TENSOR REMARK 3 T11: 1.1643 T22: 1.0823 REMARK 3 T33: 0.9051 T12: 0.1648 REMARK 3 T13: -0.1997 T23: -0.0982 REMARK 3 L TENSOR REMARK 3 L11: 3.5413 L22: 7.1053 REMARK 3 L33: 8.6332 L12: 4.6671 REMARK 3 L13: 1.0675 L23: 0.7191 REMARK 3 S TENSOR REMARK 3 S11: 0.1260 S12: -1.2619 S13: 0.2733 REMARK 3 S21: 1.5919 S22: -0.4185 S23: -1.0481 REMARK 3 S31: 0.9106 S32: 0.1332 S33: 0.3247 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KR3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079688. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14068 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.235 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.870 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.13900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.56000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.870 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 32% PEG600, 0.1M NACL, 0.1M MES, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 67.41700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.70500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 67.41700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.70500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 52570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 57 REMARK 465 ALA A 58 REMARK 465 SER A 59 REMARK 465 PRO A 60 REMARK 465 LYS A 61 REMARK 465 ASP A 62 REMARK 465 ASP A 63 REMARK 465 ILE A 64 REMARK 465 ALA A 145 REMARK 465 ASP A 146 REMARK 465 PHE A 147 REMARK 465 MET A 148 REMARK 465 VAL A 149 REMARK 465 LYS A 150 REMARK 465 ASP A 151 REMARK 465 VAL A 152 REMARK 465 LYS A 153 REMARK 465 ASN A 154 REMARK 465 GLY A 155 REMARK 465 GLU A 156 REMARK 465 CYS A 157 REMARK 465 PHE A 158 REMARK 465 ARG A 159 REMARK 465 ALA A 160 REMARK 465 ASP A 161 REMARK 465 HIS A 162 REMARK 465 LEU A 163 REMARK 465 LEU A 164 REMARK 465 LYS A 165 REMARK 465 ALA A 166 REMARK 465 HIS A 167 REMARK 465 LEU A 168 REMARK 465 GLN A 169 REMARK 465 LYS A 170 REMARK 465 LEU A 171 REMARK 465 MET A 172 REMARK 465 SER A 173 REMARK 465 ASP A 174 REMARK 465 LYS A 175 REMARK 465 LYS A 176 REMARK 465 CYS A 177 REMARK 465 SER A 178 REMARK 465 VAL A 179 REMARK 465 GLU A 180 REMARK 465 LYS A 181 REMARK 465 LYS A 182 REMARK 465 SER A 183 REMARK 465 GLU A 184 REMARK 465 MET A 185 REMARK 465 GLU A 186 REMARK 465 SER A 187 REMARK 465 VAL A 188 REMARK 465 LEU A 189 REMARK 465 ALA A 190 REMARK 465 GLN A 191 REMARK 465 LEU A 192 REMARK 465 ASP A 193 REMARK 465 ASN A 194 REMARK 465 TYR A 195 REMARK 465 GLY A 196 REMARK 465 GLN A 197 REMARK 465 GLN A 198 REMARK 465 GLU A 199 REMARK 465 LEU A 200 REMARK 465 ALA A 201 REMARK 465 ASP A 202 REMARK 465 LEU A 203 REMARK 465 PHE A 204 REMARK 465 VAL A 205 REMARK 465 ASN A 206 REMARK 465 TYR A 207 REMARK 465 ASN A 208 REMARK 465 VAL A 209 REMARK 465 LYS A 210 REMARK 465 SER A 211 REMARK 465 PRO A 212 REMARK 465 ILE A 213 REMARK 465 THR A 214 REMARK 465 GLY A 215 REMARK 465 ASN A 216 REMARK 465 ASP A 217 REMARK 465 LEU A 218 REMARK 465 SER A 219 REMARK 465 PRO A 220 REMARK 465 PRO A 221 REMARK 465 VAL A 222 REMARK 465 GLU A 382 REMARK 465 MET A 383 REMARK 465 ALA A 384 REMARK 465 HIS A 385 REMARK 465 TYR A 386 REMARK 465 GLN A 442 REMARK 465 PHE A 443 REMARK 465 GLU A 444 REMARK 465 PRO A 445 REMARK 465 SER A 446 REMARK 465 LYS A 447 REMARK 465 GLY A 448 REMARK 465 ALA A 449 REMARK 465 ILE A 450 REMARK 465 GLY A 451 REMARK 465 LYS A 452 REMARK 465 ALA A 453 REMARK 465 TYR A 454 REMARK 465 LYS A 455 REMARK 465 LYS A 456 REMARK 465 ASP A 457 REMARK 465 ALA A 458 REMARK 465 LYS A 459 REMARK 465 LEU A 460 REMARK 465 VAL A 461 REMARK 465 MET A 462 REMARK 465 GLU A 463 REMARK 465 TYR A 464 REMARK 465 LEU A 465 REMARK 465 ALA A 466 REMARK 465 ILE A 467 REMARK 465 CYS A 468 REMARK 465 ASP A 469 REMARK 465 GLU A 470 REMARK 465 CYS A 471 REMARK 465 TYR A 472 REMARK 465 ILE A 473 REMARK 465 THR A 474 REMARK 465 GLU A 475 REMARK 465 MET A 476 REMARK 465 GLU A 477 REMARK 465 MET A 478 REMARK 465 LEU A 479 REMARK 465 LEU A 480 REMARK 465 ASN A 481 REMARK 465 GLU A 482 REMARK 465 LYS A 483 REMARK 465 GLY A 484 REMARK 465 GLU A 485 REMARK 465 PHE A 486 REMARK 465 THR A 487 REMARK 465 ILE A 488 REMARK 465 GLU A 489 REMARK 465 THR A 490 REMARK 465 GLU A 491 REMARK 465 GLY A 492 REMARK 465 LYS A 493 REMARK 465 THR A 494 REMARK 465 PHE A 495 REMARK 465 GLN A 496 REMARK 465 LEU A 497 REMARK 465 THR A 498 REMARK 465 LYS A 499 REMARK 465 ASP A 500 REMARK 465 MET A 501 REMARK 465 ILE A 502 REMARK 465 ASN A 503 REMARK 465 VAL A 504 REMARK 465 LYS A 505 REMARK 465 ARG A 506 REMARK 465 LYS A 679 REMARK 465 LYS A 680 REMARK 465 GLU A 681 REMARK 465 THR A 682 REMARK 465 ILE A 683 REMARK 465 GLU A 684 REMARK 465 GLU A 685 REMARK 465 LEU A 686 REMARK 465 GLU A 687 REMARK 465 HIS A 688 REMARK 465 HIS A 689 REMARK 465 HIS A 690 REMARK 465 HIS A 691 REMARK 465 HIS A 692 REMARK 465 HIS A 693 REMARK 465 A C 73 REMARK 465 C C 74 REMARK 465 C C 75 REMARK 465 A C 76 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 224 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A 280 CG1 CG2 CD1 REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 TYR A 413 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 420 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 433 CG CD CE NZ REMARK 470 GLU A 434 CG CD OE1 OE2 REMARK 470 LYS A 436 CG CD CE NZ REMARK 470 ASN A 439 CG OD1 ND2 REMARK 470 VAL A 441 CG1 CG2 REMARK 470 LYS A 509 CG CD CE NZ REMARK 470 SER A 568 OG REMARK 470 ASN A 570 CG OD1 ND2 REMARK 470 GLN A 571 CG CD OE1 NE2 REMARK 470 GLU A 572 CG CD OE1 OE2 REMARK 470 LYS A 578 CG CD CE NZ REMARK 470 GLU A 579 CG CD OE1 OE2 REMARK 470 THR A 626 OG1 CG2 REMARK 470 ILE A 645 CG1 CG2 CD1 REMARK 470 GLU A 673 CG CD OE1 OE2 REMARK 470 GLU A 676 CG CD OE1 OE2 REMARK 470 THR A 677 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 599 OP2 U C 38 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 226 39.02 -77.73 REMARK 500 PRO A 234 62.44 -57.03 REMARK 500 ASP A 316 32.68 -98.60 REMARK 500 TYR A 322 72.49 -107.32 REMARK 500 GLU A 343 41.90 -87.50 REMARK 500 LYS A 372 46.81 -105.98 REMARK 500 MET A 379 -135.68 -70.77 REMARK 500 GLU A 380 37.05 -92.52 REMARK 500 ASP A 389 63.43 167.46 REMARK 500 SER A 411 -134.27 -84.27 REMARK 500 CYS A 412 86.18 -68.45 REMARK 500 TYR A 413 -101.49 -120.97 REMARK 500 LYS A 423 -2.15 73.34 REMARK 500 ASN A 439 90.37 -66.44 REMARK 500 SER A 552 45.00 -77.48 REMARK 500 GLN A 569 44.02 -59.92 REMARK 500 GLU A 572 20.26 -72.99 REMARK 500 HIS A 628 92.35 -62.89 REMARK 500 ARG A 635 -72.96 -36.50 REMARK 500 MET A 638 -12.51 66.99 REMARK 500 LEU A 671 -133.12 -73.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLY A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 702 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KQE RELATED DB: PDB REMARK 900 RELATED ID: 4KR2 RELATED DB: PDB DBREF 4KR3 A 60 685 UNP P41250 SYG_HUMAN 114 739 DBREF 4KR3 C 1 76 GB 174921 K00209 1 74 SEQADV 4KR3 MET A 57 UNP P41250 EXPRESSION TAG SEQADV 4KR3 ALA A 58 UNP P41250 EXPRESSION TAG SEQADV 4KR3 SER A 59 UNP P41250 EXPRESSION TAG SEQADV 4KR3 GLY A 71 UNP P41250 GLU 125 ENGINEERED MUTATION SEQADV 4KR3 LEU A 686 UNP P41250 EXPRESSION TAG SEQADV 4KR3 GLU A 687 UNP P41250 EXPRESSION TAG SEQADV 4KR3 HIS A 688 UNP P41250 EXPRESSION TAG SEQADV 4KR3 HIS A 689 UNP P41250 EXPRESSION TAG SEQADV 4KR3 HIS A 690 UNP P41250 EXPRESSION TAG SEQADV 4KR3 HIS A 691 UNP P41250 EXPRESSION TAG SEQADV 4KR3 HIS A 692 UNP P41250 EXPRESSION TAG SEQADV 4KR3 HIS A 693 UNP P41250 EXPRESSION TAG SEQRES 1 A 637 MET ALA SER PRO LYS ASP ASP ILE VAL ASP ARG ALA LYS SEQRES 2 A 637 MET GLY ASP THR LEU LYS ARG ARG PHE PHE TYR ASP GLN SEQRES 3 A 637 ALA PHE ALA ILE TYR GLY GLY VAL SER GLY LEU TYR ASP SEQRES 4 A 637 PHE GLY PRO VAL GLY CYS ALA LEU LYS ASN ASN ILE ILE SEQRES 5 A 637 GLN THR TRP ARG GLN HIS PHE ILE GLN GLU GLU GLN ILE SEQRES 6 A 637 LEU GLU ILE ASP CYS THR MET LEU THR PRO GLU PRO VAL SEQRES 7 A 637 LEU LYS THR SER GLY HIS VAL ASP LYS PHE ALA ASP PHE SEQRES 8 A 637 MET VAL LYS ASP VAL LYS ASN GLY GLU CYS PHE ARG ALA SEQRES 9 A 637 ASP HIS LEU LEU LYS ALA HIS LEU GLN LYS LEU MET SER SEQRES 10 A 637 ASP LYS LYS CYS SER VAL GLU LYS LYS SER GLU MET GLU SEQRES 11 A 637 SER VAL LEU ALA GLN LEU ASP ASN TYR GLY GLN GLN GLU SEQRES 12 A 637 LEU ALA ASP LEU PHE VAL ASN TYR ASN VAL LYS SER PRO SEQRES 13 A 637 ILE THR GLY ASN ASP LEU SER PRO PRO VAL SER PHE ASN SEQRES 14 A 637 LEU MET PHE LYS THR PHE ILE GLY PRO GLY GLY ASN MET SEQRES 15 A 637 PRO GLY TYR LEU ARG PRO GLU THR ALA GLN GLY ILE PHE SEQRES 16 A 637 LEU ASN PHE LYS ARG LEU LEU GLU PHE ASN GLN GLY LYS SEQRES 17 A 637 LEU PRO PHE ALA ALA ALA GLN ILE GLY ASN SER PHE ARG SEQRES 18 A 637 ASN GLU ILE SER PRO ARG SER GLY LEU ILE ARG VAL ARG SEQRES 19 A 637 GLU PHE THR MET ALA GLU ILE GLU HIS PHE VAL ASP PRO SEQRES 20 A 637 SER GLU LYS ASP HIS PRO LYS PHE GLN ASN VAL ALA ASP SEQRES 21 A 637 LEU HIS LEU TYR LEU TYR SER ALA LYS ALA GLN VAL SER SEQRES 22 A 637 GLY GLN SER ALA ARG LYS MET ARG LEU GLY ASP ALA VAL SEQRES 23 A 637 GLU GLN GLY VAL ILE ASN ASN THR VAL LEU GLY TYR PHE SEQRES 24 A 637 ILE GLY ARG ILE TYR LEU TYR LEU THR LYS VAL GLY ILE SEQRES 25 A 637 SER PRO ASP LYS LEU ARG PHE ARG GLN HIS MET GLU ASN SEQRES 26 A 637 GLU MET ALA HIS TYR ALA CYS ASP CYS TRP ASP ALA GLU SEQRES 27 A 637 SER LYS THR SER TYR GLY TRP ILE GLU ILE VAL GLY CYS SEQRES 28 A 637 ALA ASP ARG SER CYS TYR ASP LEU SER CYS HIS ALA ARG SEQRES 29 A 637 ALA THR LYS VAL PRO LEU VAL ALA GLU LYS PRO LEU LYS SEQRES 30 A 637 GLU PRO LYS THR VAL ASN VAL VAL GLN PHE GLU PRO SER SEQRES 31 A 637 LYS GLY ALA ILE GLY LYS ALA TYR LYS LYS ASP ALA LYS SEQRES 32 A 637 LEU VAL MET GLU TYR LEU ALA ILE CYS ASP GLU CYS TYR SEQRES 33 A 637 ILE THR GLU MET GLU MET LEU LEU ASN GLU LYS GLY GLU SEQRES 34 A 637 PHE THR ILE GLU THR GLU GLY LYS THR PHE GLN LEU THR SEQRES 35 A 637 LYS ASP MET ILE ASN VAL LYS ARG PHE GLN LYS THR LEU SEQRES 36 A 637 TYR VAL GLU GLU VAL VAL PRO ASN VAL ILE GLU PRO SER SEQRES 37 A 637 PHE GLY LEU GLY ARG ILE MET TYR THR VAL PHE GLU HIS SEQRES 38 A 637 THR PHE HIS VAL ARG GLU GLY ASP GLU GLN ARG THR PHE SEQRES 39 A 637 PHE SER PHE PRO ALA VAL VAL ALA PRO PHE LYS CYS SER SEQRES 40 A 637 VAL LEU PRO LEU SER GLN ASN GLN GLU PHE MET PRO PHE SEQRES 41 A 637 VAL LYS GLU LEU SER GLU ALA LEU THR ARG HIS GLY VAL SEQRES 42 A 637 SER HIS LYS VAL ASP ASP SER SER GLY SER ILE GLY ARG SEQRES 43 A 637 ARG TYR ALA ARG THR ASP GLU ILE GLY VAL ALA PHE GLY SEQRES 44 A 637 VAL THR ILE ASP PHE ASP THR VAL ASN LYS THR PRO HIS SEQRES 45 A 637 THR ALA THR LEU ARG ASP ARG ASP SER MET ARG GLN ILE SEQRES 46 A 637 ARG ALA GLU ILE SER GLU LEU PRO SER ILE VAL GLN ASP SEQRES 47 A 637 LEU ALA ASN GLY ASN ILE THR TRP ALA ASP VAL GLU ALA SEQRES 48 A 637 ARG TYR PRO LEU PHE GLU GLY GLN GLU THR GLY LYS LYS SEQRES 49 A 637 GLU THR ILE GLU GLU LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 74 GTP C G C C G C U G G U G U SEQRES 2 C 74 A G U G G U A U C A U G C SEQRES 3 C 74 A A G A U U C C C A U U C SEQRES 4 C 74 U U G C G A C C C G G G U SEQRES 5 C 74 U C G A U U C C C G G G C SEQRES 6 C 74 G G C G C A C C A MODRES 4KR3 GTP C 1 G GUANOSINE-5'-TRIPHOSPHATE HET GTP C 1 32 HET GLY A 701 5 HET ANP A 702 31 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM GLY GLYCINE HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER FORMUL 2 GTP C10 H16 N5 O14 P3 FORMUL 3 GLY C2 H5 N O2 FORMUL 4 ANP C10 H17 N6 O12 P3 FORMUL 5 HOH *14(H2 O) HELIX 1 1 ASP A 66 ARG A 77 1 12 HELIX 2 2 PHE A 84 GLY A 88 5 5 HELIX 3 3 GLY A 97 PHE A 115 1 19 HELIX 4 4 PHE A 115 GLN A 120 1 6 HELIX 5 5 GLU A 132 SER A 138 1 7 HELIX 6 6 THR A 246 LEU A 252 1 7 HELIX 7 7 ASN A 253 ASN A 261 1 9 HELIX 8 8 LYS A 310 VAL A 314 5 5 HELIX 9 9 SER A 323 SER A 329 1 7 HELIX 10 10 LEU A 338 GLU A 343 1 6 HELIX 11 11 ASN A 349 VAL A 366 1 18 HELIX 12 12 TYR A 413 LYS A 423 1 11 HELIX 13 13 LEU A 527 THR A 538 1 12 HELIX 14 14 PRO A 554 ALA A 558 5 5 HELIX 15 15 ASN A 570 GLU A 572 5 3 HELIX 16 16 PHE A 573 HIS A 587 1 15 HELIX 17 17 SER A 599 ILE A 610 1 12 HELIX 18 18 ASP A 619 ASN A 624 1 6 HELIX 19 19 GLU A 647 ASN A 657 1 11 HELIX 20 20 THR A 661 TYR A 669 1 9 SHEET 1 A 2 TYR A 80 GLN A 82 0 SHEET 2 A 2 TYR A 94 PHE A 96 -1 O ASP A 95 N ASP A 81 SHEET 1 B 3 LEU A 129 PRO A 131 0 SHEET 2 B 3 PRO A 239 LEU A 242 -1 O TYR A 241 N THR A 130 SHEET 3 B 3 LYS A 229 PHE A 231 -1 N THR A 230 O GLY A 240 SHEET 1 C 8 PHE A 267 PHE A 276 0 SHEET 2 C 8 GLU A 291 VAL A 301 -1 O GLU A 298 N ALA A 269 SHEET 3 C 8 ASN A 519 GLY A 526 -1 O ASN A 519 N VAL A 301 SHEET 4 C 8 GLY A 400 ARG A 410 -1 N ARG A 410 O VAL A 520 SHEET 5 C 8 CYS A 390 THR A 397 -1 N ALA A 393 O ILE A 404 SHEET 6 C 8 LEU A 373 GLN A 377 -1 N ARG A 374 O GLU A 394 SHEET 7 C 8 HIS A 318 TYR A 322 1 N TYR A 322 O PHE A 375 SHEET 8 C 8 ARG A 334 ARG A 337 -1 O ARG A 334 N LEU A 321 SHEET 1 D 2 ALA A 428 ASN A 439 0 SHEET 2 D 2 GLN A 508 VAL A 516 -1 O TYR A 512 N LEU A 432 SHEET 1 E 2 PHE A 539 VAL A 541 0 SHEET 2 E 2 THR A 549 PHE A 551 -1 O PHE A 550 N HIS A 540 SHEET 1 F 5 HIS A 591 VAL A 593 0 SHEET 2 F 5 CYS A 562 PRO A 566 1 N CYS A 562 O LYS A 592 SHEET 3 F 5 PHE A 614 ILE A 618 1 O ILE A 618 N LEU A 565 SHEET 4 F 5 THR A 629 ASP A 634 -1 O THR A 631 N THR A 617 SHEET 5 F 5 GLN A 640 GLU A 644 -1 O ILE A 641 N LEU A 632 LINK O3' GTP C 1 P C C 2 1555 1555 1.60 CISPEP 1 LEU A 265 PRO A 266 0 -1.21 SITE 1 AC1 6 GLU A 245 GLU A 296 ARG A 410 GLU A 522 SITE 2 AC1 6 SER A 524 ANP A 702 SITE 1 AC2 15 ARG A 277 GLU A 279 LEU A 286 ILE A 287 SITE 2 AC2 15 ARG A 288 VAL A 289 PHE A 292 HIS A 378 SITE 3 AC2 15 ASP A 392 GLU A 403 ILE A 404 SER A 524 SITE 4 AC2 15 GLY A 526 ARG A 529 GLY A 701 CRYST1 134.834 87.410 80.592 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007417 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011440 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012408 0.00000