HEADER LYASE 17-MAY-13 4KSF TITLE CRYSTAL STRUCTURE OF MALONYL-COA DECARBOXYLASE FROM AGROBACTERIUM TITLE 2 VITIS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET RIR35 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALONYL-COA DECARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM VITIS; SOURCE 3 ORGANISM_TAXID: 311402; SOURCE 4 STRAIN: S4; SOURCE 5 GENE: AVI_5372, MCD (AVI_5372); SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS NESGC, STRUCTURAL GENOMICS, PSI-BIOLOGY, NORTHEAST STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, ALPHA-BETA TWO-DOMAINED PROTEIN, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR F.FOROUHAR,H.NEELY,J.SEETHARAMAN,S.SAHDEV,R.XIAO,C.CICCOSANTI,D.LEE, AUTHOR 2 J.K.EVERETT,T.B.ACTON,G.T.MONTELIONE,J.F.HUNT,L.TONG,NORTHEAST AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 5 06-DEC-23 4KSF 1 REMARK REVDAT 4 20-SEP-23 4KSF 1 REMARK SEQADV LINK REVDAT 3 24-JUL-13 4KSF 1 JRNL REVDAT 2 10-JUL-13 4KSF 1 JRNL REVDAT 1 19-JUN-13 4KSF 0 JRNL AUTH D.S.FROESE,F.FOROUHAR,T.H.TRAN,M.VOLLMAR,Y.S.KIM,S.LEW, JRNL AUTH 2 H.NEELY,J.SEETHARAMAN,Y.SHEN,R.XIAO,T.B.ACTON,J.K.EVERETT, JRNL AUTH 3 G.CANNONE,S.PURANIK,P.SAVITSKY,T.KROJER,E.S.PILKA,W.KIYANI, JRNL AUTH 4 W.H.LEE,B.D.MARSDEN,F.VON DELFT,C.K.ALLERSTON,L.SPAGNOLO, JRNL AUTH 5 O.GILEADI,G.T.MONTELIONE,U.OPPERMANN,W.W.YUE,L.TONG JRNL TITL CRYSTAL STRUCTURES OF MALONYL-COENZYME A DECARBOXYLASE JRNL TITL 2 PROVIDE INSIGHTS INTO ITS CATALYTIC MECHANISM AND JRNL TITL 3 DISEASE-CAUSING MUTATIONS. JRNL REF STRUCTURE V. 21 1182 2013 JRNL REFN ISSN 0969-2126 JRNL PMID 23791943 JRNL DOI 10.1016/J.STR.2013.05.001 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 199793.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.6 REMARK 3 NUMBER OF REFLECTIONS : 19052 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1801 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.29 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2279 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 253 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.021 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3231 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 23 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.67000 REMARK 3 B22 (A**2) : 2.67000 REMARK 3 B33 (A**2) : -5.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM SIGMAA (A) : 0.46 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.51 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.57 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.870 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 34.57 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KSF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079736. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97900 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21321 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 15.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.55100 REMARK 200 R SYM FOR SHELL (I) : 0.49700 REMARK 200 FOR SHELL : 2.650 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4KSA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 100MM NACL, 5MM DTT, REMARK 280 0.02% NAN3, 10MM TRIS-HCL (PH 7.5). PRECIPITATION SOLUTION: 200 REMARK 280 MM AMMONIUM SULFATE AND 20% (W/V) PEG3350, MICROBATCH, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 50.20600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 50.20600 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 121.36800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.20600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.68400 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.20600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 182.05200 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.20600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 182.05200 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.20600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 60.68400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 50.20600 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 50.20600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 121.36800 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 50.20600 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 50.20600 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 121.36800 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 50.20600 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 182.05200 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 50.20600 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 60.68400 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 50.20600 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 60.68400 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 50.20600 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 182.05200 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 50.20600 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 50.20600 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 121.36800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 73020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -136.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NI NI A 501 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 THR A 4 REMARK 465 SER A 5 REMARK 465 PHE A 6 REMARK 465 LEU A 7 REMARK 465 SER A 8 REMARK 465 ASP A 9 REMARK 465 LEU A 10 REMARK 465 LEU A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 VAL A 14 REMARK 465 THR A 15 REMARK 465 GLU A 16 REMARK 465 ARG A 17 REMARK 465 GLY A 18 REMARK 465 ARG A 19 REMARK 465 ALA A 20 REMARK 465 LEU A 21 REMARK 465 LEU A 22 REMARK 465 PHE A 23 REMARK 465 SER A 24 REMARK 465 GLY A 25 REMARK 465 SER A 26 REMARK 465 LYS A 27 REMARK 465 ALA A 28 REMARK 465 ARG A 29 REMARK 465 ASP A 30 REMARK 465 ARG A 31 REMARK 465 VAL A 32 REMARK 465 VAL A 33 REMARK 465 ASP A 34 REMARK 465 LYS A 145 REMARK 465 GLU A 146 REMARK 465 ASP A 147 REMARK 465 ILE A 445 REMARK 465 GLU A 446 REMARK 465 PRO A 447 REMARK 465 ILE A 448 REMARK 465 LEU A 449 REMARK 465 GLU A 450 REMARK 465 HIS A 451 REMARK 465 HIS A 452 REMARK 465 HIS A 453 REMARK 465 HIS A 454 REMARK 465 HIS A 455 REMARK 465 HIS A 456 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 37 32.34 -67.17 REMARK 500 GLU A 38 8.48 -150.19 REMARK 500 SER A 47 68.20 -69.75 REMARK 500 ARG A 48 -118.58 -45.59 REMARK 500 ALA A 58 -74.88 -47.38 REMARK 500 PHE A 67 -174.74 -174.61 REMARK 500 HIS A 77 -61.32 -102.12 REMARK 500 MSE A 78 2.92 -61.40 REMARK 500 ARG A 82 -28.17 -140.74 REMARK 500 PHE A 83 64.40 -100.25 REMARK 500 ASP A 95 -71.23 -63.06 REMARK 500 PRO A 103 -36.95 -24.86 REMARK 500 ASN A 129 19.79 54.02 REMARK 500 VAL A 194 -86.26 -58.72 REMARK 500 GLU A 196 130.58 -16.14 REMARK 500 ALA A 198 -91.05 -34.65 REMARK 500 ARG A 223 -28.73 57.81 REMARK 500 SER A 249 0.51 -64.49 REMARK 500 SER A 265 116.30 178.74 REMARK 500 PHE A 278 -6.27 -155.28 REMARK 500 LEU A 282 -52.76 -24.55 REMARK 500 ARG A 292 -75.58 -56.28 REMARK 500 LEU A 303 77.91 -113.36 REMARK 500 VAL A 306 74.43 61.38 REMARK 500 PRO A 339 22.13 -63.05 REMARK 500 ASP A 344 81.62 57.78 REMARK 500 TYR A 362 -73.50 -40.17 REMARK 500 PHE A 363 -76.94 -47.26 REMARK 500 THR A 365 -67.01 -122.58 REMARK 500 GLU A 366 119.27 -31.49 REMARK 500 ASN A 371 71.39 63.30 REMARK 500 ASP A 396 -72.39 -84.69 REMARK 500 ARG A 397 -6.09 81.70 REMARK 500 ALA A 405 57.23 -168.43 REMARK 500 HIS A 406 50.82 29.23 REMARK 500 TYR A 414 76.56 -117.17 REMARK 500 LEU A 416 -70.64 -55.44 REMARK 500 ILE A 419 -51.52 -170.11 REMARK 500 LEU A 426 -73.10 -71.83 REMARK 500 ALA A 427 -85.06 -18.93 REMARK 500 ARG A 429 -62.64 175.78 REMARK 500 GLN A 442 -83.27 -17.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KSA RELATED DB: PDB REMARK 900 BACTERIAL MCD ORTHOLOG REMARK 900 RELATED ID: NESG-RIR35 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 4KS9 RELATED DB: PDB REMARK 900 BACTERIAL MCD ORTHOLOG DBREF 4KSF A 1 449 UNP B9K0V9 B9K0V9_AGRVS 1 449 SEQADV 4KSF GLU A 450 UNP B9K0V9 EXPRESSION TAG SEQADV 4KSF HIS A 451 UNP B9K0V9 EXPRESSION TAG SEQADV 4KSF HIS A 452 UNP B9K0V9 EXPRESSION TAG SEQADV 4KSF HIS A 453 UNP B9K0V9 EXPRESSION TAG SEQADV 4KSF HIS A 454 UNP B9K0V9 EXPRESSION TAG SEQADV 4KSF HIS A 455 UNP B9K0V9 EXPRESSION TAG SEQADV 4KSF HIS A 456 UNP B9K0V9 EXPRESSION TAG SEQRES 1 A 456 MSE ALA GLY THR SER PHE LEU SER ASP LEU LEU SER GLY SEQRES 2 A 456 VAL THR GLU ARG GLY ARG ALA LEU LEU PHE SER GLY SER SEQRES 3 A 456 LYS ALA ARG ASP ARG VAL VAL ASP THR ASP ILE GLU THR SEQRES 4 A 456 LEU CYS GLU MSE LEU LEU SER SER ARG GLY GLU ALA SER SEQRES 5 A 456 GLY MSE ALA ILE ALA ALA GLU ILE LEU ASP ARG TRP SER SEQRES 6 A 456 ARG PHE ASN ALA ALA GLU ALA VAL GLN PHE LEU HIS MSE SEQRES 7 A 456 LEU SER ASP ARG PHE GLY ALA GLU ALA ALA ALA LEU ASP SEQRES 8 A 456 LYS ALA ILE ASP ALA TYR ARG THR ASP LYS SER PRO MSE SEQRES 9 A 456 ALA VAL ILE ALA LEU HIS ASN ALA ALA GLU PRO ARG ARG SEQRES 10 A 456 GLN GLU LEU LEU ARG ARG LEU ASN LEU ALA PRO ASN GLY SEQRES 11 A 456 THR GLN LYS LEU VAL ARG MSE ARG GLU ARG LEU LEU GLU SEQRES 12 A 456 THR LYS GLU ASP ARG ALA ASP LEU GLY ALA VAL ASP THR SEQRES 13 A 456 ASP PHE ALA HIS LEU PHE SER SER TRP PHE ASN ARG GLY SEQRES 14 A 456 PHE LEU THR LEU GLN PRO ILE ASP TRP THR THR PRO ALA SEQRES 15 A 456 HIS ILE LEU GLU LYS ILE ILE LYS TYR GLU ALA VAL HIS SEQRES 16 A 456 GLU ILE ALA GLY TRP GLU GLU LEU ARG ARG ARG LEU ALA SEQRES 17 A 456 PRO ALA ASP ARG ARG CYS PHE ALA PHE PHE HIS PRO ARG SEQRES 18 A 456 LEU ARG ASP ASP PRO LEU VAL PHE VAL GLU VAL ALA LEU SEQRES 19 A 456 THR ARG SER ILE PRO SER ALA ILE ALA ASP VAL LEU ASP SEQRES 20 A 456 GLU SER ARG ASP HIS ILE GLY ALA ASP THR ALA THR THR SEQRES 21 A 456 ALA VAL PHE TYR SER ILE SER ASN CYS GLN ASP GLY LEU SEQRES 22 A 456 ARG GLY ILE SER PHE GLY ASN PHE LEU ILE LYS GLN VAL SEQRES 23 A 456 VAL GLU ASP LEU ARG ARG ASP LEU PRO GLY LEU LYS GLU SEQRES 24 A 456 PHE VAL THR LEU SER PRO VAL PRO GLY PHE ALA ARG TRP SEQRES 25 A 456 ILE SER LYS ILE ARG ASP PRO LYS SER GLY PHE PRO LEU SEQRES 26 A 456 SER PRO GLU ASP ARG ASN THR LEU VAL LEU LEU ASP ASP SEQRES 27 A 456 PRO THR TRP PRO GLU ASP LYS ALA ARG ALA ASP ALA VAL SEQRES 28 A 456 GLU ARG ILE LEU LEU PRO LEU ALA ALA ARG TYR PHE ILE SEQRES 29 A 456 THR GLU ARG THR PRO ASP ASN ARG PRO VAL ASP PRO VAL SEQRES 30 A 456 ALA ARG PHE HIS LEU GLY ASN GLY ALA ARG LEU GLU ARG SEQRES 31 A 456 LEU ASN PHE LEU GLY ASP ARG SER VAL LYS ALA MSE ARG SEQRES 32 A 456 GLN ALA HIS GLY LEU MSE VAL ASN TYR LEU TYR LYS LEU SEQRES 33 A 456 GLU ASP ILE GLU THR ASN HIS GLU ALA LEU ALA GLN ARG SEQRES 34 A 456 GLY GLU VAL ALA ALA SER PRO ALA VAL LYS ALA LEU GLN SEQRES 35 A 456 GLY LYS ILE GLU PRO ILE LEU GLU HIS HIS HIS HIS HIS SEQRES 36 A 456 HIS MODRES 4KSF MSE A 43 MET SELENOMETHIONINE MODRES 4KSF MSE A 54 MET SELENOMETHIONINE MODRES 4KSF MSE A 78 MET SELENOMETHIONINE MODRES 4KSF MSE A 104 MET SELENOMETHIONINE MODRES 4KSF MSE A 137 MET SELENOMETHIONINE MODRES 4KSF MSE A 402 MET SELENOMETHIONINE MODRES 4KSF MSE A 409 MET SELENOMETHIONINE HET MSE A 43 8 HET MSE A 54 8 HET MSE A 78 8 HET MSE A 104 8 HET MSE A 137 8 HET MSE A 402 8 HET MSE A 409 8 HET NI A 501 1 HET CL A 502 1 HET CL A 503 1 HETNAM MSE SELENOMETHIONINE HETNAM NI NICKEL (II) ION HETNAM CL CHLORIDE ION FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 NI NI 2+ FORMUL 3 CL 2(CL 1-) FORMUL 5 HOH *23(H2 O) HELIX 1 1 THR A 39 SER A 47 1 9 HELIX 2 2 SER A 52 ARG A 66 1 15 HELIX 3 3 GLU A 71 LEU A 76 1 6 HELIX 4 4 GLU A 86 ARG A 98 1 13 HELIX 5 5 SER A 102 ALA A 113 1 12 HELIX 6 6 PRO A 115 ASN A 125 1 11 HELIX 7 7 ASN A 129 THR A 144 1 16 HELIX 8 8 ASP A 150 PHE A 166 1 17 HELIX 9 9 ASN A 167 LEU A 171 5 5 HELIX 10 10 PRO A 181 GLU A 192 1 12 HELIX 11 11 GLY A 199 ARG A 206 1 8 HELIX 12 12 ALA A 241 ASP A 247 1 7 HELIX 13 13 GLY A 254 ALA A 258 5 5 HELIX 14 14 PHE A 278 LEU A 294 1 17 HELIX 15 15 PHE A 309 ASP A 318 1 10 HELIX 16 16 PRO A 319 GLY A 322 5 4 HELIX 17 17 SER A 326 ASN A 331 1 6 HELIX 18 18 THR A 332 LEU A 336 5 5 HELIX 19 19 ASP A 344 THR A 365 1 22 HELIX 20 20 VAL A 377 GLY A 383 1 7 HELIX 21 21 SER A 398 HIS A 406 1 9 HELIX 22 22 THR A 421 GLN A 428 1 8 HELIX 23 23 SER A 435 LEU A 441 1 7 SHEET 1 A 7 THR A 172 PRO A 175 0 SHEET 2 A 7 ARG A 212 PHE A 218 -1 O ALA A 216 N GLN A 174 SHEET 3 A 7 VAL A 228 THR A 235 -1 O VAL A 232 N ARG A 213 SHEET 4 A 7 THR A 260 ASN A 268 -1 O THR A 260 N THR A 235 SHEET 5 A 7 GLU A 299 SER A 304 1 O VAL A 301 N PHE A 263 SHEET 6 A 7 MSE A 409 LEU A 413 -1 O VAL A 410 N SER A 304 SHEET 7 A 7 ARG A 387 ASN A 392 -1 N ASN A 392 O MSE A 409 LINK C GLU A 42 N MSE A 43 1555 1555 1.33 LINK C MSE A 43 N LEU A 44 1555 1555 1.33 LINK C GLY A 53 N MSE A 54 1555 1555 1.33 LINK C MSE A 54 N ALA A 55 1555 1555 1.33 LINK C HIS A 77 N MSE A 78 1555 1555 1.33 LINK C MSE A 78 N LEU A 79 1555 1555 1.33 LINK C PRO A 103 N MSE A 104 1555 1555 1.32 LINK C MSE A 104 N ALA A 105 1555 1555 1.33 LINK C ARG A 136 N MSE A 137 1555 1555 1.33 LINK C MSE A 137 N ARG A 138 1555 1555 1.33 LINK C ALA A 401 N MSE A 402 1555 1555 1.33 LINK C MSE A 402 N ARG A 403 1555 1555 1.33 LINK C LEU A 408 N MSE A 409 1555 1555 1.33 LINK C MSE A 409 N VAL A 410 1555 1555 1.33 LINK NE2 HIS A 160 NI NI A 501 1555 1555 2.10 SITE 1 AC1 1 HIS A 160 SITE 1 AC2 2 LEU A 173 GLN A 285 SITE 1 AC3 2 ASN A 129 ARG A 221 CRYST1 100.412 100.412 242.736 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009959 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009959 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004120 0.00000