HEADER HYDROLASE/HYDROLASE INHIBITOR 20-MAY-13 4KTC TITLE NS3/NS4A PROTEASE WITH INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE PROTEASE NS3; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: HEPACIVIRIN, NS3P, P70; COMPND 5 EC: 3.4.21.98, 3.6.1.15, 3.6.4.13; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NS4A PEPTIDE; COMPND 9 CHAIN: B, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS (ISOLATE JAPANESE); SOURCE 3 ORGANISM_COMMON: HCV; SOURCE 4 ORGANISM_TAXID: 11116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC; SOURCE 10 ORGANISM_TAXID: 32630; SOURCE 11 OTHER_DETAILS: SOLID-PHASE PEPTIDE SYNTHESIS KEYWDS PROTEASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.ZHANG,J.BALLARD,G.P.A.VIGERS,B.J.BRANDHUBER REVDAT 3 20-SEP-23 4KTC 1 REMARK SEQADV LINK REVDAT 2 26-MAR-14 4KTC 1 JRNL REVDAT 1 07-AUG-13 4KTC 0 JRNL AUTH Y.JIANG,S.W.ANDREWS,K.R.CONDROSKI,B.BUCKMAN,V.SEREBRYANY, JRNL AUTH 2 S.WENGLOWSKY,A.L.KENNEDY,M.R.MADDURU,B.WANG,M.LYON, JRNL AUTH 3 G.A.DOHERTY,B.T.WOODARD,C.LEMIEUX,M.G.DO,H.ZHANG,J.BALLARD, JRNL AUTH 4 G.VIGERS,B.J.BRANDHUBER,P.STENGEL,J.A.JOSEY,L.BEIGELMAN, JRNL AUTH 5 L.BLATT,S.D.SEIWERT JRNL TITL DISCOVERY OF DANOPREVIR (ITMN-191/R7227), A HIGHLY SELECTIVE JRNL TITL 2 AND POTENT INHIBITOR OF HEPATITIS C VIRUS (HCV) NS3/4A JRNL TITL 3 PROTEASE. JRNL REF J.MED.CHEM. V. 57 1753 2014 JRNL REFN ISSN 0022-2623 JRNL PMID 23672640 JRNL DOI 10.1021/JM400164C REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 16112 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 827 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1164 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2778 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 39 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.08000 REMARK 3 B22 (A**2) : 1.08000 REMARK 3 B33 (A**2) : -3.51000 REMARK 3 B12 (A**2) : 1.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.395 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.258 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.191 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.766 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2950 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4030 ; 1.298 ; 2.021 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 376 ; 6.215 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;28.109 ;21.868 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 447 ;17.731 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;17.883 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 459 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2122 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KTC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000079769. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : CONFOCAL MIRRORS REMARK 200 OPTICS : CONFOCAL MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16946 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 28.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.15700 REMARK 200 R SYM (I) : 0.14200 REMARK 200 FOR THE DATA SET : 9.1300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.74 REMARK 200 R MERGE FOR SHELL (I) : 0.39700 REMARK 200 R SYM FOR SHELL (I) : 0.36100 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: PDB ENTRY 1DY8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG3350, 10% GLYCEROL, 1M MGCL2, REMARK 280 100MM BIS-TRIS PH 6.2 AND 10MM DTT AT 20C. , VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 63.74000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 63.74000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.74000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 MET A 0 REMARK 465 GLU A 176 REMARK 465 THR A 177 REMARK 465 THR A 178 REMARK 465 MET A 179 REMARK 465 ARG A 180 REMARK 465 SER A 181 REMARK 465 PRO A 182 REMARK 465 VAL A 183 REMARK 465 PHE A 184 REMARK 465 THR A 185 REMARK 465 ASP A 186 REMARK 465 ASN A 187 REMARK 465 LYS B 220 REMARK 465 ARG B 234 REMARK 465 LYS B 235 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 MET C 0 REMARK 465 ARG C 180 REMARK 465 SER C 181 REMARK 465 PRO C 182 REMARK 465 VAL C 183 REMARK 465 PHE C 184 REMARK 465 THR C 185 REMARK 465 ASP C 186 REMARK 465 ASN C 187 REMARK 465 GLY D 233 REMARK 465 ARG D 234 REMARK 465 LYS D 235 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 68 56.65 -109.03 REMARK 500 PRO C 2 -135.72 -68.49 REMARK 500 PHE C 43 -167.71 -169.25 REMARK 500 SER C 101 150.14 -49.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 97 SG REMARK 620 2 CYS A 99 SG 115.6 REMARK 620 3 CYS A 145 SG 98.5 110.9 REMARK 620 4 HOH A 310 O 106.8 118.4 104.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 97 SG REMARK 620 2 CYS C 99 SG 115.4 REMARK 620 3 CYS C 145 SG 108.1 92.4 REMARK 620 N 1 2 REMARK 630 REMARK 630 MOLECULE TYPE: CYCLIC PEPTIDE INHIBITOR REMARK 630 MOLECULE NAME: (2R,6S,13AR,14AR,16AS)-6-{[(CYCLOPENTYLOXY)CARBONYL] REMARK 630 AMINO}-14A-[(CYCLOPROPYLSULFONYL)CARBAMOYL]-5,16- REMARK 630 DIOXOOCTADECAHYDROCYCLOPROPA[E]PYRROLO[1,2-A][1,4] REMARK 630 DIAZACYCLOPENTADECIN-2-YL 3,4-DIHYDROISOQUINOLINE-2(1H)-CARBOXYLATE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 1X3 A 202 REMARK 630 1X3 C 202 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: 12W 1X0 0Y9 0YA HYP 1X1 REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1X3 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1X3 C 202 DBREF 4KTC A 2 187 UNP P26662 POLG_HCVJA 1028 1213 DBREF 4KTC C 2 187 UNP P26662 POLG_HCVJA 1028 1213 DBREF 4KTC B 220 235 PDB 4KTC 4KTC 220 235 DBREF 4KTC D 220 235 PDB 4KTC 4KTC 220 235 SEQADV 4KTC GLY A -2 UNP P26662 EXPRESSION TAG SEQADV 4KTC SER A -1 UNP P26662 EXPRESSION TAG SEQADV 4KTC MET A 0 UNP P26662 EXPRESSION TAG SEQADV 4KTC ALA A 1 UNP P26662 EXPRESSION TAG SEQADV 4KTC ILE A 114 UNP P26662 VAL 1140 VARIANT SEQADV 4KTC VAL A 132 UNP P26662 ILE 1158 VARIANT SEQADV 4KTC GLY C -2 UNP P26662 EXPRESSION TAG SEQADV 4KTC SER C -1 UNP P26662 EXPRESSION TAG SEQADV 4KTC MET C 0 UNP P26662 EXPRESSION TAG SEQADV 4KTC ALA C 1 UNP P26662 EXPRESSION TAG SEQADV 4KTC ILE C 114 UNP P26662 VAL 1140 VARIANT SEQADV 4KTC VAL C 132 UNP P26662 ILE 1158 VARIANT SEQRES 1 A 190 GLY SER MET ALA PRO ILE THR ALA TYR SER GLN GLN THR SEQRES 2 A 190 ARG GLY LEU LEU GLY CYS ILE ILE THR SER LEU THR GLY SEQRES 3 A 190 ARG ASP LYS ASN GLN VAL ASP GLY GLU VAL GLN VAL LEU SEQRES 4 A 190 SER THR ALA THR GLN SER PHE LEU ALA THR CYS VAL ASN SEQRES 5 A 190 GLY VAL CYS TRP THR VAL TYR HIS GLY ALA GLY SER LYS SEQRES 6 A 190 THR LEU ALA GLY PRO LYS GLY PRO ILE THR GLN MET TYR SEQRES 7 A 190 THR ASN VAL ASP GLN ASP LEU VAL GLY TRP PRO ALA PRO SEQRES 8 A 190 PRO GLY ALA ARG SER MET THR PRO CYS THR CYS GLY SER SEQRES 9 A 190 SER ASP LEU TYR LEU VAL THR ARG HIS ALA ASP VAL ILE SEQRES 10 A 190 PRO VAL ARG ARG ARG GLY ASP SER ARG GLY SER LEU LEU SEQRES 11 A 190 SER PRO ARG PRO VAL SER TYR LEU LYS GLY SER SER GLY SEQRES 12 A 190 GLY PRO LEU LEU CYS PRO SER GLY HIS VAL VAL GLY ILE SEQRES 13 A 190 PHE ARG ALA ALA VAL CYS THR ARG GLY VAL ALA LYS ALA SEQRES 14 A 190 VAL ASP PHE ILE PRO VAL GLU SER MET GLU THR THR MET SEQRES 15 A 190 ARG SER PRO VAL PHE THR ASP ASN SEQRES 1 B 16 LYS GLY SER VAL VAL ILE VAL GLY ARG ILE ILE LEU SER SEQRES 2 B 16 GLY ARG LYS SEQRES 1 C 190 GLY SER MET ALA PRO ILE THR ALA TYR SER GLN GLN THR SEQRES 2 C 190 ARG GLY LEU LEU GLY CYS ILE ILE THR SER LEU THR GLY SEQRES 3 C 190 ARG ASP LYS ASN GLN VAL ASP GLY GLU VAL GLN VAL LEU SEQRES 4 C 190 SER THR ALA THR GLN SER PHE LEU ALA THR CYS VAL ASN SEQRES 5 C 190 GLY VAL CYS TRP THR VAL TYR HIS GLY ALA GLY SER LYS SEQRES 6 C 190 THR LEU ALA GLY PRO LYS GLY PRO ILE THR GLN MET TYR SEQRES 7 C 190 THR ASN VAL ASP GLN ASP LEU VAL GLY TRP PRO ALA PRO SEQRES 8 C 190 PRO GLY ALA ARG SER MET THR PRO CYS THR CYS GLY SER SEQRES 9 C 190 SER ASP LEU TYR LEU VAL THR ARG HIS ALA ASP VAL ILE SEQRES 10 C 190 PRO VAL ARG ARG ARG GLY ASP SER ARG GLY SER LEU LEU SEQRES 11 C 190 SER PRO ARG PRO VAL SER TYR LEU LYS GLY SER SER GLY SEQRES 12 C 190 GLY PRO LEU LEU CYS PRO SER GLY HIS VAL VAL GLY ILE SEQRES 13 C 190 PHE ARG ALA ALA VAL CYS THR ARG GLY VAL ALA LYS ALA SEQRES 14 C 190 VAL ASP PHE ILE PRO VAL GLU SER MET GLU THR THR MET SEQRES 15 C 190 ARG SER PRO VAL PHE THR ASP ASN SEQRES 1 D 16 LYS GLY SER VAL VAL ILE VAL GLY ARG ILE ILE LEU SER SEQRES 2 D 16 GLY ARG LYS HET ZN A 201 1 HET 1X3 A 202 52 HET ZN C 201 1 HET 1X3 C 202 52 HETNAM ZN ZINC ION HETNAM 1X3 (2R,6S,13AR,14AR,16AS)-6-{[(CYCLOPENTYLOXY) HETNAM 2 1X3 CARBONYL]AMINO}-14A-[(CYCLOPROPYLSULFONYL)CARBAMOYL]- HETNAM 3 1X3 5,16-DIOXOOCTADECAHYDROCYCLOPROPA[E]PYRROLO[1,2-A][1, HETNAM 4 1X3 4]DIAZACYCLOPENTADECIN-2-YL 3,4-DIHYDROISOQUINOLINE- HETNAM 5 1X3 2(1H)-CARBOXYLATE FORMUL 5 ZN 2(ZN 2+) FORMUL 6 1X3 2(C37 H51 N5 O9 S) FORMUL 9 HOH *39(H2 O) HELIX 1 1 GLY A 12 GLY A 23 1 12 HELIX 2 2 TYR A 56 GLY A 60 1 5 HELIX 3 3 VAL A 78 GLN A 80 5 3 HELIX 4 4 VAL A 132 LYS A 136 1 5 HELIX 5 5 GLU A 173 MET A 175 5 3 HELIX 6 6 GLY C 12 GLY C 23 1 12 HELIX 7 7 TYR C 56 GLY C 60 1 5 HELIX 8 8 VAL C 78 GLN C 80 5 3 HELIX 9 9 VAL C 132 LYS C 136 1 5 HELIX 10 10 VAL C 172 MET C 179 1 8 SHEET 1 A 7 THR A 4 GLN A 9 0 SHEET 2 A 7 VAL B 224 SER B 232 -1 O ILE B 230 N TYR A 6 SHEET 3 A 7 VAL A 33 THR A 38 -1 N SER A 37 O VAL B 224 SHEET 4 A 7 GLN A 41 VAL A 48 -1 O PHE A 43 N LEU A 36 SHEET 5 A 7 VAL A 51 VAL A 55 -1 O TRP A 53 N THR A 46 SHEET 6 A 7 LEU A 82 PRO A 86 -1 O TRP A 85 N CYS A 52 SHEET 7 A 7 TYR A 75 ASN A 77 -1 N ASN A 77 O LEU A 82 SHEET 1 B 2 LEU A 64 GLY A 66 0 SHEET 2 B 2 GLY A 69 ILE A 71 -1 O ILE A 71 N LEU A 64 SHEET 1 C 7 ASP A 103 VAL A 107 0 SHEET 2 C 7 VAL A 113 ARG A 118 -1 O VAL A 116 N LEU A 104 SHEET 3 C 7 ARG A 123 PRO A 131 -1 O SER A 125 N ARG A 117 SHEET 4 C 7 VAL A 163 PRO A 171 -1 O VAL A 167 N GLY A 124 SHEET 5 C 7 VAL A 150 THR A 160 -1 N ALA A 156 O ASP A 168 SHEET 6 C 7 PRO A 142 LEU A 144 -1 N LEU A 143 O VAL A 151 SHEET 7 C 7 ASP A 103 VAL A 107 -1 N TYR A 105 O LEU A 144 SHEET 1 D 7 ALA C 5 GLN C 9 0 SHEET 2 D 7 VAL D 224 LEU D 231 -1 O ILE D 230 N TYR C 6 SHEET 3 D 7 VAL C 33 SER C 37 -1 N VAL C 35 O GLY D 227 SHEET 4 D 7 SER C 42 VAL C 48 -1 O PHE C 43 N LEU C 36 SHEET 5 D 7 VAL C 51 VAL C 55 -1 O TRP C 53 N THR C 46 SHEET 6 D 7 LEU C 82 PRO C 86 -1 O TRP C 85 N CYS C 52 SHEET 7 D 7 TYR C 75 ASN C 77 -1 N ASN C 77 O LEU C 82 SHEET 1 E 7 ASP C 103 VAL C 107 0 SHEET 2 E 7 VAL C 113 ARG C 118 -1 O VAL C 116 N LEU C 104 SHEET 3 E 7 ARG C 123 PRO C 131 -1 O SER C 125 N ARG C 117 SHEET 4 E 7 VAL C 163 PRO C 171 -1 O VAL C 167 N GLY C 124 SHEET 5 E 7 VAL C 150 THR C 160 -1 N ALA C 156 O ASP C 168 SHEET 6 E 7 PRO C 142 LEU C 144 -1 N LEU C 143 O GLY C 152 SHEET 7 E 7 ASP C 103 VAL C 107 -1 N TYR C 105 O LEU C 144 LINK SG CYS A 97 ZN ZN A 201 1555 1555 2.33 LINK SG CYS A 99 ZN ZN A 201 1555 1555 2.19 LINK SG CYS A 145 ZN ZN A 201 1555 1555 2.38 LINK ZN ZN A 201 O HOH A 310 1555 1555 2.34 LINK SG CYS C 97 ZN ZN C 201 1555 1555 2.41 LINK SG CYS C 99 ZN ZN C 201 1555 1555 2.90 LINK SG CYS C 145 ZN ZN C 201 1555 1555 2.12 SITE 1 AC1 6 CYS A 97 THR A 98 CYS A 99 CYS A 145 SITE 2 AC1 6 SER A 147 HOH A 310 SITE 1 AC2 22 GLN A 41 PHE A 43 HIS A 57 GLY A 58 SITE 2 AC2 22 ASP A 79 ASP A 81 VAL A 132 LEU A 135 SITE 3 AC2 22 LYS A 136 GLY A 137 SER A 138 SER A 139 SITE 4 AC2 22 PHE A 154 ARG A 155 ALA A 156 ALA A 157 SITE 5 AC2 22 ASP A 168 ASN C 49 VAL C 51 MET C 74 SITE 6 AC2 22 TYR C 75 MET C 179 SITE 1 AC3 3 CYS C 97 CYS C 99 CYS C 145 SITE 1 AC4 16 PHE C 43 HIS C 57 GLY C 58 ASP C 79 SITE 2 AC4 16 ASP C 81 ARG C 119 VAL C 132 LEU C 135 SITE 3 AC4 16 LYS C 136 GLY C 137 SER C 138 SER C 139 SITE 4 AC4 16 PHE C 154 ARG C 155 ALA C 156 ALA C 157 CRYST1 72.988 72.988 127.480 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013701 0.007910 0.000000 0.00000 SCALE2 0.000000 0.015821 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007844 0.00000