HEADER SIGNALING PROTEIN 21-MAY-13 4KU4 TITLE CRYSTAL STRUCTURE OF A RAS-LIKE PROTEIN FROM CRYPHONECTRIA PARASITICA TITLE 2 IN COMPLEX WITH GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-3 FROM CRYPHONECTRIA PARASITICA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRYPHONECTRIA PARASITICA; SOURCE 3 ORGANISM_TAXID: 5116; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SMALL G PROTEIN, GTP/GDP BINDING, GTP HYDROLYSIS, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.CHEN REVDAT 2 20-SEP-23 4KU4 1 REMARK LINK REVDAT 1 05-JUN-13 4KU4 0 JRNL AUTH C.CHEN,G.CHOI JRNL TITL CRYSTAL STRUCTURE OF A RAS-LIKE PROTEIN FROM CRYPHONECTRIA JRNL TITL 2 PARASITICA IN COMPLEX WITH GDP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.150 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.1 REMARK 3 NUMBER OF REFLECTIONS : 42577 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2162 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.5271 - 3.9451 0.97 2967 142 0.1906 0.2002 REMARK 3 2 3.9451 - 3.1316 0.96 2913 156 0.1698 0.1808 REMARK 3 3 3.1316 - 2.7358 0.95 2875 165 0.1898 0.2079 REMARK 3 4 2.7358 - 2.4857 0.94 2838 142 0.1936 0.2162 REMARK 3 5 2.4857 - 2.3075 0.94 2816 174 0.1805 0.2225 REMARK 3 6 2.3075 - 2.1715 0.93 2806 154 0.1725 0.2090 REMARK 3 7 2.1715 - 2.0627 0.92 2754 148 0.1816 0.2300 REMARK 3 8 2.0627 - 1.9729 0.90 2744 135 0.1826 0.2461 REMARK 3 9 1.9729 - 1.8970 0.89 2683 145 0.1928 0.2295 REMARK 3 10 1.8970 - 1.8315 0.89 2686 141 0.2145 0.2382 REMARK 3 11 1.8315 - 1.7743 0.86 2616 142 0.2253 0.2629 REMARK 3 12 1.7743 - 1.7235 0.85 2614 128 0.2275 0.2784 REMARK 3 13 1.7235 - 1.6782 0.86 2554 140 0.2371 0.2859 REMARK 3 14 1.6782 - 1.6372 0.83 2530 139 0.2505 0.2863 REMARK 3 15 1.6372 - 1.6000 0.67 2019 111 0.2483 0.3149 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.30 REMARK 3 SHRINKAGE RADIUS : 0.05 REMARK 3 K_SOL : 0.46 REMARK 3 B_SOL : 70.30 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.37970 REMARK 3 B22 (A**2) : 0.34000 REMARK 3 B33 (A**2) : 1.03980 REMARK 3 B12 (A**2) : 0.06440 REMARK 3 B13 (A**2) : 0.09920 REMARK 3 B23 (A**2) : -2.73490 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2794 REMARK 3 ANGLE : 1.220 3769 REMARK 3 CHIRALITY : 0.075 431 REMARK 3 PLANARITY : 0.004 478 REMARK 3 DIHEDRAL : 15.066 1059 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 7:195) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0582 43.6881 7.1716 REMARK 3 T TENSOR REMARK 3 T11: 0.0595 T22: 0.0615 REMARK 3 T33: 0.0538 T12: 0.0055 REMARK 3 T13: 0.0060 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.2697 L22: 0.1213 REMARK 3 L33: 0.0206 L12: 0.2738 REMARK 3 L13: 0.1008 L23: -0.0109 REMARK 3 S TENSOR REMARK 3 S11: -0.0101 S12: 0.0327 S13: -0.0189 REMARK 3 S21: -0.0228 S22: 0.0032 S23: -0.0004 REMARK 3 S31: -0.0112 S32: -0.0024 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 6:194) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4317 12.0375 26.5028 REMARK 3 T TENSOR REMARK 3 T11: 0.0596 T22: 0.0546 REMARK 3 T33: 0.0497 T12: -0.0013 REMARK 3 T13: -0.0023 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.2956 L22: 0.0918 REMARK 3 L33: 0.1058 L12: -0.1016 REMARK 3 L13: 0.0087 L23: 0.0222 REMARK 3 S TENSOR REMARK 3 S11: -0.0015 S12: -0.0089 S13: 0.0134 REMARK 3 S21: 0.0223 S22: -0.0046 S23: 0.0016 REMARK 3 S31: 0.0107 S32: -0.0188 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 301:769) OR CHAIN B AND (RESSEQ REMARK 3 600:1073) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0926 27.1403 16.5326 REMARK 3 T TENSOR REMARK 3 T11: 0.0466 T22: 0.0338 REMARK 3 T33: 0.0425 T12: -0.0030 REMARK 3 T13: -0.0097 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.1030 L22: 0.0766 REMARK 3 L33: 0.0871 L12: 0.0566 REMARK 3 L13: -0.0398 L23: 0.0549 REMARK 3 S TENSOR REMARK 3 S11: -0.0001 S12: 0.0007 S13: -0.0067 REMARK 3 S21: -0.0075 S22: 0.0003 S23: -0.0047 REMARK 3 S31: -0.0106 S32: 0.0015 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ANISOTROPIC B FACTORS CAME FROM TLS REMARK 3 REFINEMEMNT REMARK 4 REMARK 4 4KU4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079796. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42642 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 44.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.900 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.4 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 11.0700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 62.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.74 REMARK 200 R MERGE FOR SHELL (I) : 0.31300 REMARK 200 R SYM FOR SHELL (I) : 0.31300 REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2CE2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5 MM GDP, 0.2 M MAGNESIUM FORMAT, 0.1 REMARK 280 M HEPES, 20% PEG 3350, PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LEU A 3 REMARK 465 SER A 4 REMARK 465 PRO A 5 REMARK 465 GLY A 6 REMARK 465 GLN A 69 REMARK 465 GLU A 70 REMARK 465 GLU A 71 REMARK 465 TYR A 72 REMARK 465 ARG A 119 REMARK 465 ARG A 120 REMARK 465 HIS A 121 REMARK 465 PRO A 122 REMARK 465 GLY A 123 REMARK 465 ASP A 124 REMARK 465 ARG A 125 REMARK 465 HIS A 126 REMARK 465 PRO A 127 REMARK 465 ASP A 128 REMARK 465 ASP A 129 REMARK 465 LEU A 130 REMARK 465 GLU A 196 REMARK 465 VAL A 197 REMARK 465 THR A 198 REMARK 465 ASP A 199 REMARK 465 GLU A 200 REMARK 465 GLU A 201 REMARK 465 GLN A 202 REMARK 465 ARG A 203 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 LEU B 3 REMARK 465 SER B 4 REMARK 465 PRO B 5 REMARK 465 GLN B 69 REMARK 465 GLU B 70 REMARK 465 GLU B 71 REMARK 465 THR B 118 REMARK 465 ARG B 119 REMARK 465 ARG B 120 REMARK 465 HIS B 121 REMARK 465 PRO B 122 REMARK 465 GLY B 123 REMARK 465 ASP B 124 REMARK 465 ARG B 125 REMARK 465 HIS B 126 REMARK 465 PRO B 127 REMARK 465 ASP B 128 REMARK 465 ASP B 129 REMARK 465 LEU B 130 REMARK 465 ARG B 195 REMARK 465 GLU B 196 REMARK 465 VAL B 197 REMARK 465 THR B 198 REMARK 465 ASP B 199 REMARK 465 GLU B 200 REMARK 465 GLU B 201 REMARK 465 GLN B 202 REMARK 465 ARG B 203 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY A 68 CA C O REMARK 470 THR A 118 CA C O CB OG1 CG2 REMARK 470 GLY B 68 CA C O REMARK 470 GLU B 117 CA C O CB CG CD OE1 REMARK 470 GLU B 117 OE2 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLY A 68 REMARK 475 THR A 118 REMARK 475 GLY B 68 REMARK 475 GLU B 117 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 38 OE1 REMARK 480 LEU A 44 CD2 REMARK 480 LYS A 114 CG CD CE NZ REMARK 480 GLU A 117 CG CD OE1 OE2 REMARK 480 ARG A 195 CB CG CD NE CZ NH1 NH2 REMARK 480 ARG B 81 NH2 REMARK 480 ARG B 94 NH1 REMARK 480 LYS B 114 CB CG CD CE NZ REMARK 480 ASP B 116 CG OD1 OD2 REMARK 480 ASP B 147 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD21 LEU B 44 O HOH B 972 1.04 REMARK 500 HE2 LYS A 143 O HOH A 636 1.15 REMARK 500 HG CYS B 144 HB3 GLU B 170 1.25 REMARK 500 HB3 ASN B 178 O HOH B 953 1.28 REMARK 500 HH22 ARG A 192 O HOH A 631 1.30 REMARK 500 HE3 LYS B 114 O HOH B 956 1.31 REMARK 500 HG2 GLU A 106 O HOH A 513 1.35 REMARK 500 HG3 ARG A 195 O HOH A 656 1.36 REMARK 500 HG13 VAL B 169 O HOH B 952 1.38 REMARK 500 N GLY A 68 O HOH A 754 1.43 REMARK 500 HG3 GLU A 106 O HOH A 513 1.44 REMARK 500 HG23 ILE A 88 O HOH A 659 1.45 REMARK 500 HG21 VAL B 140 O HOH B 1049 1.46 REMARK 500 HH11 ARG B 193 O HOH B 1060 1.49 REMARK 500 HH12 ARG B 192 O HOH B 1070 1.50 REMARK 500 HB2 ASP B 147 O HOH B 976 1.55 REMARK 500 HD2 PHE A 90 O HOH A 761 1.60 REMARK 500 O HOH B 731 O HOH B 922 1.64 REMARK 500 O HOH A 543 O HOH A 746 1.65 REMARK 500 O HOH A 617 O HOH A 675 1.75 REMARK 500 NH1 ARG B 192 O HOH B 1070 1.79 REMARK 500 CD2 LEU B 44 O HOH B 972 1.79 REMARK 500 O HOH B 918 O HOH B 1064 1.81 REMARK 500 O HOH A 528 O HOH A 614 1.82 REMARK 500 N PRO B 131 O HOH B 933 1.82 REMARK 500 O HOH A 536 O HOH A 763 1.84 REMARK 500 O HOH A 656 O HOH A 657 1.84 REMARK 500 C ALA A 67 O HOH A 754 1.85 REMARK 500 CD2 PHE A 90 O HOH A 761 1.85 REMARK 500 O HOH A 653 O HOH A 755 1.87 REMARK 500 O HOH B 823 O HOH B 973 1.88 REMARK 500 O HOH A 607 O HOH A 697 1.90 REMARK 500 O HOH B 933 O HOH B 934 1.90 REMARK 500 CG2 VAL B 140 O HOH B 1049 1.92 REMARK 500 CE LYS B 114 O HOH B 956 1.92 REMARK 500 O HOH A 565 O HOH A 665 1.92 REMARK 500 O HOH A 742 O HOH A 767 1.93 REMARK 500 O HOH B 801 O HOH B 1054 1.93 REMARK 500 O HOH A 747 O HOH A 762 1.94 REMARK 500 CE LYS A 143 O HOH A 636 1.96 REMARK 500 OH TYR B 48 O HOH B 1055 1.96 REMARK 500 O HOH A 567 O HOH A 764 1.98 REMARK 500 O HOH B 1024 O HOH B 1063 1.98 REMARK 500 NH2 ARG A 192 O HOH A 631 1.98 REMARK 500 O HOH B 928 O HOH B 930 1.98 REMARK 500 O HOH A 616 O HOH A 760 1.99 REMARK 500 O HOH B 735 O HOH B 914 1.99 REMARK 500 O HOH A 478 O HOH A 662 1.99 REMARK 500 O HOH A 612 O HOH A 672 1.99 REMARK 500 CD1 LEU A 115 O HOH A 737 2.00 REMARK 500 REMARK 500 THIS ENTRY HAS 91 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HG3 LYS B 114 O HOH A 640 1556 1.08 REMARK 500 O HOH A 587 O HOH A 588 1655 1.10 REMARK 500 CG LYS B 114 O HOH A 640 1556 1.22 REMARK 500 HG2 LYS B 114 O HOH A 640 1556 1.24 REMARK 500 HH12 ARG B 113 O HOH A 753 1556 1.43 REMARK 500 HG2 PRO A 134 O HOH A 671 1655 1.45 REMARK 500 CB LYS B 114 O HOH A 640 1556 1.94 REMARK 500 NH1 ARG B 113 O HOH A 753 1556 2.11 REMARK 500 O HOH A 544 O HOH A 757 1655 2.18 REMARK 500 CA LYS B 114 O HOH A 640 1556 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 36 61.80 -107.14 REMARK 500 ASP A 41 71.77 -161.65 REMARK 500 ALA A 67 145.52 178.50 REMARK 500 ASP A 116 -8.27 -59.13 REMARK 500 GLU A 117 -150.45 -155.85 REMARK 500 LYS A 143 36.89 71.23 REMARK 500 LEU A 146 46.04 -95.39 REMARK 500 PHE B 36 58.91 -112.01 REMARK 500 ASP B 41 75.22 -162.91 REMARK 500 LYS B 143 31.40 70.56 REMARK 500 LEU B 146 46.05 -95.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 25 OG1 REMARK 620 2 GDP A 301 O1B 91.7 REMARK 620 3 HOH A 401 O 177.4 90.4 REMARK 620 4 HOH A 402 O 88.7 88.2 89.7 REMARK 620 5 HOH A 403 O 89.7 89.2 91.9 177.0 REMARK 620 6 HOH A 404 O 85.8 172.0 91.9 84.1 98.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 46 OD2 REMARK 620 2 HOH A 405 O 90.4 REMARK 620 3 HOH A 406 O 104.2 96.6 REMARK 620 4 HOH A 407 O 162.4 90.6 93.1 REMARK 620 5 HOH A 408 O 80.3 88.6 173.0 82.1 REMARK 620 6 HOH A 409 O 100.7 161.0 95.6 74.2 78.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 25 OG1 REMARK 620 2 GDP B 600 O1B 92.3 REMARK 620 3 HOH B 701 O 175.8 91.5 REMARK 620 4 HOH B 702 O 90.6 88.8 87.6 REMARK 620 5 HOH B 703 O 88.1 93.9 93.5 177.0 REMARK 620 6 HOH B 704 O 88.1 172.2 87.8 83.4 93.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 601 DBREF 4KU4 A -2 203 PDB 4KU4 4KU4 -2 203 DBREF 4KU4 B -2 203 PDB 4KU4 4KU4 -2 203 SEQRES 1 A 206 GLY SER HIS MET ALA LEU SER PRO GLY ALA GLY LYS ILE SEQRES 2 A 206 THR ASP LYS ILE ALA MET LEU GLY GLU GLY GLY VAL GLY SEQRES 3 A 206 LYS THR SER LEU THR VAL ASN LEU THR LYS HIS VAL PHE SEQRES 4 A 206 SER GLU THR TYR ASP PRO THR LEU GLU ASP SER TYR ARG SEQRES 5 A 206 ARG GLN CYS VAL ILE ASP GLY ILE PRO SER HIS LEU GLU SEQRES 6 A 206 ILE LEU ASP THR ALA GLY GLN GLU GLU TYR GLY ALA LEU SEQRES 7 A 206 ARG GLU GLN TRP ILE ARG GLN ASN GLU LEU PHE VAL ILE SEQRES 8 A 206 VAL PHE ASP VAL THR ARG ARG SER SER PHE GLU ALA ALA SEQRES 9 A 206 GLU ARG LEU PHE GLU GLU VAL ILE GLN THR LYS ARG LYS SEQRES 10 A 206 LEU ASP GLU THR ARG ARG HIS PRO GLY ASP ARG HIS PRO SEQRES 11 A 206 ASP ASP LEU PRO PHE ALA PRO SER LEU VAL VAL LEU VAL SEQRES 12 A 206 GLY ASN LYS CYS ASP LEU ASP THR ARG ARG GLU VAL GLY SEQRES 13 A 206 THR LEU GLU GLY SER SER LEU ALA LYS LYS LEU GLY CYS SEQRES 14 A 206 GLY PHE VAL GLU THR SER ALA LYS LEU GLY THR ASN VAL SEQRES 15 A 206 GLU GLU ALA PHE PHE SER VAL VAL ARG ALA ASP ARG ARG SEQRES 16 A 206 ARG LYS ARG GLU VAL THR ASP GLU GLU GLN ARG SEQRES 1 B 206 GLY SER HIS MET ALA LEU SER PRO GLY ALA GLY LYS ILE SEQRES 2 B 206 THR ASP LYS ILE ALA MET LEU GLY GLU GLY GLY VAL GLY SEQRES 3 B 206 LYS THR SER LEU THR VAL ASN LEU THR LYS HIS VAL PHE SEQRES 4 B 206 SER GLU THR TYR ASP PRO THR LEU GLU ASP SER TYR ARG SEQRES 5 B 206 ARG GLN CYS VAL ILE ASP GLY ILE PRO SER HIS LEU GLU SEQRES 6 B 206 ILE LEU ASP THR ALA GLY GLN GLU GLU TYR GLY ALA LEU SEQRES 7 B 206 ARG GLU GLN TRP ILE ARG GLN ASN GLU LEU PHE VAL ILE SEQRES 8 B 206 VAL PHE ASP VAL THR ARG ARG SER SER PHE GLU ALA ALA SEQRES 9 B 206 GLU ARG LEU PHE GLU GLU VAL ILE GLN THR LYS ARG LYS SEQRES 10 B 206 LEU ASP GLU THR ARG ARG HIS PRO GLY ASP ARG HIS PRO SEQRES 11 B 206 ASP ASP LEU PRO PHE ALA PRO SER LEU VAL VAL LEU VAL SEQRES 12 B 206 GLY ASN LYS CYS ASP LEU ASP THR ARG ARG GLU VAL GLY SEQRES 13 B 206 THR LEU GLU GLY SER SER LEU ALA LYS LYS LEU GLY CYS SEQRES 14 B 206 GLY PHE VAL GLU THR SER ALA LYS LEU GLY THR ASN VAL SEQRES 15 B 206 GLU GLU ALA PHE PHE SER VAL VAL ARG ALA ASP ARG ARG SEQRES 16 B 206 ARG LYS ARG GLU VAL THR ASP GLU GLU GLN ARG HET GDP A 301 40 HET MG A 302 1 HET MG A 303 1 HET GDP B 600 40 HET MG B 601 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 4 MG 3(MG 2+) FORMUL 8 HOH *742(H2 O) HELIX 1 1 GLY A 23 LYS A 33 1 11 HELIX 2 2 ALA A 74 GLN A 82 1 9 HELIX 3 3 ARG A 94 ASP A 116 1 23 HELIX 4 4 ALA A 133 SER A 135 5 3 HELIX 5 5 LEU A 146 ARG A 150 5 5 HELIX 6 6 GLY A 153 GLY A 165 1 13 HELIX 7 7 ASN A 178 LYS A 194 1 17 HELIX 8 8 GLY B 23 THR B 32 1 10 HELIX 9 9 LEU B 75 ASN B 83 1 9 HELIX 10 10 ARG B 94 ASP B 116 1 23 HELIX 11 11 ALA B 133 SER B 135 5 3 HELIX 12 12 LEU B 146 ARG B 150 5 5 HELIX 13 13 GLY B 153 GLY B 165 1 13 HELIX 14 14 ASN B 178 LYS B 194 1 17 SHEET 1 A 6 SER A 47 ILE A 54 0 SHEET 2 A 6 ILE A 57 LEU A 64 -1 O ILE A 63 N TYR A 48 SHEET 3 A 6 ASP A 12 LEU A 17 1 N ILE A 14 O LEU A 64 SHEET 4 A 6 LEU A 85 ASP A 91 1 O VAL A 89 N LEU A 17 SHEET 5 A 6 VAL A 137 ASN A 142 1 O ASN A 142 N PHE A 90 SHEET 6 A 6 GLY A 167 GLU A 170 1 O GLY A 167 N LEU A 139 SHEET 1 B 6 SER B 47 ILE B 54 0 SHEET 2 B 6 ILE B 57 LEU B 64 -1 O SER B 59 N CYS B 52 SHEET 3 B 6 ASP B 12 LEU B 17 1 N ILE B 14 O LEU B 64 SHEET 4 B 6 LEU B 85 ASP B 91 1 O VAL B 87 N LEU B 17 SHEET 5 B 6 VAL B 137 ASN B 142 1 O ASN B 142 N PHE B 90 SHEET 6 B 6 GLY B 167 GLU B 170 1 O GLY B 167 N LEU B 139 LINK OG1 THR A 25 MG MG A 302 1555 1555 2.19 LINK OD2 ASP A 46 MG MG A 303 1555 1555 2.23 LINK O1B GDP A 301 MG MG A 302 1555 1555 2.19 LINK MG MG A 302 O HOH A 401 1555 1555 2.21 LINK MG MG A 302 O HOH A 402 1555 1555 2.20 LINK MG MG A 302 O HOH A 403 1555 1555 2.16 LINK MG MG A 302 O HOH A 404 1555 1555 2.15 LINK MG MG A 303 O HOH A 405 1555 1555 2.14 LINK MG MG A 303 O HOH A 406 1555 1555 2.24 LINK MG MG A 303 O HOH A 407 1555 1555 2.24 LINK MG MG A 303 O HOH A 408 1555 1555 2.08 LINK MG MG A 303 O HOH A 409 1555 1555 2.00 LINK OG1 THR B 25 MG MG B 601 1555 1555 2.18 LINK O1B GDP B 600 MG MG B 601 1555 1555 2.06 LINK MG MG B 601 O HOH B 701 1555 1555 2.21 LINK MG MG B 601 O HOH B 702 1555 1555 2.17 LINK MG MG B 601 O HOH B 703 1555 1555 2.11 LINK MG MG B 601 O HOH B 704 1555 1555 2.19 SITE 1 AC1 28 GLY A 20 GLY A 21 VAL A 22 GLY A 23 SITE 2 AC1 28 LYS A 24 THR A 25 SER A 26 ASN A 142 SITE 3 AC1 28 LYS A 143 ASP A 145 LEU A 146 SER A 172 SITE 4 AC1 28 ALA A 173 LYS A 174 MG A 302 HOH A 401 SITE 5 AC1 28 HOH A 402 HOH A 403 HOH A 470 HOH A 474 SITE 6 AC1 28 HOH A 511 HOH A 553 HOH A 576 HOH A 611 SITE 7 AC1 28 HOH A 636 HOH A 690 THR B 148 ARG B 149 SITE 1 AC2 6 THR A 25 GDP A 301 HOH A 401 HOH A 402 SITE 2 AC2 6 HOH A 403 HOH A 404 SITE 1 AC3 6 ASP A 46 HOH A 405 HOH A 406 HOH A 407 SITE 2 AC3 6 HOH A 408 HOH A 409 SITE 1 AC4 23 THR A 148 ARG A 149 GLY B 21 VAL B 22 SITE 2 AC4 23 GLY B 23 LYS B 24 THR B 25 SER B 26 SITE 3 AC4 23 ASN B 142 LYS B 143 ASP B 145 LEU B 146 SITE 4 AC4 23 SER B 172 ALA B 173 LYS B 174 MG B 601 SITE 5 AC4 23 HOH B 701 HOH B 702 HOH B 703 HOH B 813 SITE 6 AC4 23 HOH B 827 HOH B 834 HOH B 867 SITE 1 AC5 6 THR B 25 GDP B 600 HOH B 701 HOH B 702 SITE 2 AC5 6 HOH B 703 HOH B 704 CRYST1 36.795 52.595 53.234 114.62 93.01 90.05 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027178 0.000023 0.001583 0.00000 SCALE2 0.000000 0.019013 0.008730 0.00000 SCALE3 0.000000 0.000000 0.020699 0.00000