HEADER HYDROLASE 22-MAY-13 4KUF TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF BOTULINUM NEUROTOXIN TITLE 2 BONT/A C134 MUTANT WITH MTSEA MODIFIED CYS-165 CAUSING STRETCH TITLE 3 DISORDER COMPND MOL_ID: 1; COMPND 2 MOLECULE: BOTULINUM NEUROTOXIN A LIGHT CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN RESIDUES 1-425; COMPND 5 SYNONYM: BOTULINUM NEUROTOXIN TYPE A, BONT/A, BONTOXILYSIN-A, BOTOX; COMPND 6 EC: 3.4.24.69; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM BOTULINUM A; SOURCE 3 ORGANISM_TAXID: 441771; SOURCE 4 STRAIN: STRAIN HALL / ATCC 3502 / NCTC 13319 / TYPE A; SOURCE 5 GENE: BOTA, CBO0806, CLC_0862; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A+ KEYWDS CLOSTRIDIAL NEUROTOXIN ZINC PROTEASE, PEPTIDASE_M27, SNAP 25, KEYWDS 2 COVALENT INHIBITION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.A.STURA,L.VERA,D.PTCHELKINE,H.BAKIRCI,S.GARCIA,V.DIVE REVDAT 3 20-SEP-23 4KUF 1 REMARK SEQADV LINK REVDAT 2 17-JUL-19 4KUF 1 REMARK LINK REVDAT 1 09-JUL-14 4KUF 0 JRNL AUTH K.GUITOT,L.VERA,L.LE ROUX,S.BREGANT,D.PTCHELKINE,F.BEAU, JRNL AUTH 2 E.A.STURA,V.DIVE JRNL TITL COVALENT MODIFICATION OF THE ACTIVE SITE CYSTEINE STRESSES JRNL TITL 2 CLOSTRIDIUM BOTULINUM NEUROTOXIN A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 49485 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2475 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.9482 - 4.4446 1.00 2873 152 0.1781 0.2008 REMARK 3 2 4.4446 - 3.5285 1.00 2725 143 0.1428 0.1790 REMARK 3 3 3.5285 - 3.0826 1.00 2660 140 0.1618 0.2390 REMARK 3 4 3.0826 - 2.8009 1.00 2647 140 0.1709 0.2427 REMARK 3 5 2.8009 - 2.6002 1.00 2632 138 0.1759 0.2524 REMARK 3 6 2.6002 - 2.4469 1.00 2609 137 0.1771 0.2184 REMARK 3 7 2.4469 - 2.3244 1.00 2605 137 0.1723 0.2269 REMARK 3 8 2.3244 - 2.2232 1.00 2624 139 0.1789 0.2308 REMARK 3 9 2.2232 - 2.1376 1.00 2595 136 0.1752 0.2283 REMARK 3 10 2.1376 - 2.0638 1.00 2582 136 0.1814 0.2294 REMARK 3 11 2.0638 - 1.9993 1.00 2581 136 0.1851 0.2472 REMARK 3 12 1.9993 - 1.9422 1.00 2577 136 0.2049 0.2540 REMARK 3 13 1.9422 - 1.8910 1.00 2589 136 0.2137 0.2910 REMARK 3 14 1.8910 - 1.8449 1.00 2573 135 0.2225 0.2863 REMARK 3 15 1.8449 - 1.8030 1.00 2570 135 0.2369 0.2806 REMARK 3 16 1.8030 - 1.7646 1.00 2542 134 0.2730 0.3445 REMARK 3 17 1.7646 - 1.7293 1.00 2574 136 0.2770 0.3032 REMARK 3 18 1.7293 - 1.6967 0.96 2452 129 0.3199 0.3333 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3693 REMARK 3 ANGLE : 1.126 4993 REMARK 3 CHIRALITY : 0.079 536 REMARK 3 PLANARITY : 0.005 649 REMARK 3 DIHEDRAL : 14.886 1376 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KUF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000079807. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93950 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49488 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 15.60 REMARK 200 R MERGE (I) : 0.14700 REMARK 200 R SYM (I) : 0.14300 REMARK 200 FOR THE DATA SET : 16.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 15.60 REMARK 200 R MERGE FOR SHELL (I) : 1.88600 REMARK 200 R SYM FOR SHELL (I) : 1.82400 REMARK 200 FOR SHELL : 1.570 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: RIGID BODY REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 4ELC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LCA-C134S-MTSEA AT 3 MG/ML IN 0.010 M REMARK 280 TRIS-HCL, PH 7.9, 0.050 M LI2SO4, DROPS - 3+3 MICRO-L, RESERVOIR REMARK 280 - 42% MPEG-550, 0.1 M LI2SO4, 0.2 M IMIDAZOLE MALATE, PH 5.5, REMARK 280 CRYOSOLUTION - 18% MPEG2K, 22% MPD, 10% DMSO, 0.050 M BICINE, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 100.81000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 32.73000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 32.73000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 151.21500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 32.73000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 32.73000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 50.40500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 32.73000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.73000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 151.21500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 32.73000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.73000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 50.40500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 100.81000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 925 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 17 -73.74 -120.86 REMARK 500 PRO A 62 176.59 -59.78 REMARK 500 SER A 157 -150.15 -82.36 REMARK 500 GLN A 162 178.68 66.14 REMARK 500 PHE A 163 174.79 -50.78 REMARK 500 GLU A 164 -109.65 -96.35 REMARK 500 LYS A 166 -76.73 -139.22 REMARK 500 PHE A 168 -39.25 -171.35 REMARK 500 HIS A 170 163.37 91.86 REMARK 500 LEU A 173 -129.87 55.35 REMARK 500 THR A 306 149.31 39.77 REMARK 500 ASN A 368 -166.34 -124.90 REMARK 500 ASN A 409 50.55 -97.38 REMARK 500 GLU A 424 64.15 -57.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 223 NE2 REMARK 620 2 HIS A 227 NE2 98.0 REMARK 620 3 GLU A 262 OE1 104.6 101.8 REMARK 620 4 GLU A 262 OE2 158.8 89.9 54.3 REMARK 620 5 HOH A 829 O 88.8 167.5 86.5 87.4 REMARK 620 6 HOH A 894 O 108.7 111.8 127.8 86.3 55.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 517 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 352 OD1 REMARK 620 2 ARG A 363 O 123.4 REMARK 620 3 HOH A 696 O 112.4 72.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 518 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 410 O REMARK 620 2 PHE A 413 O 60.1 REMARK 620 3 HOH A 817 O 91.9 90.7 REMARK 620 4 HOH A 883 O 48.2 54.2 135.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LMR A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 516 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 517 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 518 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KS6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF BOTULINUM NEUROTOXIN REMARK 900 BONT/A C134S MUTANT WITH COVALENT INHIBITOR THAT MODIFIES CYS-165 REMARK 900 CAUSING DISORDER IN 166-174 STRETCH REMARK 900 RELATED ID: 4KTX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF BOTULINUM NEUROTOXIN REMARK 900 BONT/A C134S MUTANT WITH COVALENT INHIBITOR THAT MODIFIES CYS-165 REMARK 900 CAUSING DISORDER IN 167-174 STRETCH. REMARK 900 RELATED ID: 4ELC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF BOTULINUM NEUROTOXIN REMARK 900 BONT/A C134 MUTANT WITH MTSEA MODIFIED CYS-165 REMARK 900 RELATED ID: 4EJ5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF BOTULINUM NEUROTOXIN REMARK 900 BONT/A WILD-TYPE REMARK 900 RELATED ID: 4EL4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF BOTULINUM NEUROTOXIN REMARK 900 BONT/A C134S/C165S DOUBLE MUTANT DBREF 4KUF A 1 425 UNP A5HZZ9 BXA1_CLOBH 1 425 SEQADV 4KUF MET A -19 UNP A5HZZ9 EXPRESSION TAG SEQADV 4KUF GLY A -18 UNP A5HZZ9 EXPRESSION TAG SEQADV 4KUF SER A -17 UNP A5HZZ9 EXPRESSION TAG SEQADV 4KUF SER A -16 UNP A5HZZ9 EXPRESSION TAG SEQADV 4KUF HIS A -15 UNP A5HZZ9 EXPRESSION TAG SEQADV 4KUF HIS A -14 UNP A5HZZ9 EXPRESSION TAG SEQADV 4KUF HIS A -13 UNP A5HZZ9 EXPRESSION TAG SEQADV 4KUF HIS A -12 UNP A5HZZ9 EXPRESSION TAG SEQADV 4KUF HIS A -11 UNP A5HZZ9 EXPRESSION TAG SEQADV 4KUF HIS A -10 UNP A5HZZ9 EXPRESSION TAG SEQADV 4KUF SER A -9 UNP A5HZZ9 EXPRESSION TAG SEQADV 4KUF SER A -8 UNP A5HZZ9 EXPRESSION TAG SEQADV 4KUF GLY A -7 UNP A5HZZ9 EXPRESSION TAG SEQADV 4KUF LEU A -6 UNP A5HZZ9 EXPRESSION TAG SEQADV 4KUF VAL A -5 UNP A5HZZ9 EXPRESSION TAG SEQADV 4KUF PRO A -4 UNP A5HZZ9 EXPRESSION TAG SEQADV 4KUF ARG A -3 UNP A5HZZ9 EXPRESSION TAG SEQADV 4KUF GLY A -2 UNP A5HZZ9 EXPRESSION TAG SEQADV 4KUF SER A -1 UNP A5HZZ9 EXPRESSION TAG SEQADV 4KUF HIS A 0 UNP A5HZZ9 EXPRESSION TAG SEQADV 4KUF SER A 134 UNP A5HZZ9 CYS 134 ENGINEERED MUTATION SEQRES 1 A 445 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 445 LEU VAL PRO ARG GLY SER HIS MET PRO PHE VAL ASN LYS SEQRES 3 A 445 GLN PHE ASN TYR LYS ASP PRO VAL ASN GLY VAL ASP ILE SEQRES 4 A 445 ALA TYR ILE LYS ILE PRO ASN ALA GLY GLN MET GLN PRO SEQRES 5 A 445 VAL LYS ALA PHE LYS ILE HIS ASN LYS ILE TRP VAL ILE SEQRES 6 A 445 PRO GLU ARG ASP THR PHE THR ASN PRO GLU GLU GLY ASP SEQRES 7 A 445 LEU ASN PRO PRO PRO GLU ALA LYS GLN VAL PRO VAL SER SEQRES 8 A 445 TYR TYR ASP SER THR TYR LEU SER THR ASP ASN GLU LYS SEQRES 9 A 445 ASP ASN TYR LEU LYS GLY VAL THR LYS LEU PHE GLU ARG SEQRES 10 A 445 ILE TYR SER THR ASP LEU GLY ARG MET LEU LEU THR SER SEQRES 11 A 445 ILE VAL ARG GLY ILE PRO PHE TRP GLY GLY SER THR ILE SEQRES 12 A 445 ASP THR GLU LEU LYS VAL ILE ASP THR ASN SER ILE ASN SEQRES 13 A 445 VAL ILE GLN PRO ASP GLY SER TYR ARG SER GLU GLU LEU SEQRES 14 A 445 ASN LEU VAL ILE ILE GLY PRO SER ALA ASP ILE ILE GLN SEQRES 15 A 445 PHE GLU 0QL LYS SER PHE GLY HIS GLU VAL LEU ASN LEU SEQRES 16 A 445 THR ARG ASN GLY TYR GLY SER THR GLN TYR ILE ARG PHE SEQRES 17 A 445 SER PRO ASP PHE THR PHE GLY PHE GLU GLU SER LEU GLU SEQRES 18 A 445 VAL ASP THR ASN PRO LEU LEU GLY ALA GLY LYS PHE ALA SEQRES 19 A 445 THR ASP PRO ALA VAL THR LEU ALA HIS GLU LEU ILE HIS SEQRES 20 A 445 ALA GLY HIS ARG LEU TYR GLY ILE ALA ILE ASN PRO ASN SEQRES 21 A 445 ARG VAL PHE LYS VAL ASN THR ASN ALA TYR TYR GLU MET SEQRES 22 A 445 SER GLY LEU GLU VAL SER PHE GLU GLU LEU ARG THR PHE SEQRES 23 A 445 GLY GLY HIS ASP ALA LYS PHE ILE ASP SER LEU GLN GLU SEQRES 24 A 445 ASN GLU PHE ARG LEU TYR TYR TYR ASN LYS PHE LYS ASP SEQRES 25 A 445 ILE ALA SER THR LEU ASN LYS ALA LYS SER ILE VAL GLY SEQRES 26 A 445 THR THR ALA SER LEU GLN TYR MET LYS ASN VAL PHE LYS SEQRES 27 A 445 GLU LYS TYR LEU LEU SER GLU ASP THR SER GLY LYS PHE SEQRES 28 A 445 SER VAL ASP LYS LEU LYS PHE ASP LYS LEU TYR LYS MET SEQRES 29 A 445 LEU THR GLU ILE TYR THR GLU ASP ASN PHE VAL LYS PHE SEQRES 30 A 445 PHE LYS VAL LEU ASN ARG LYS THR TYR LEU ASN PHE ASP SEQRES 31 A 445 LYS ALA VAL PHE LYS ILE ASN ILE VAL PRO LYS VAL ASN SEQRES 32 A 445 TYR THR ILE TYR ASP GLY PHE ASN LEU ARG ASN THR ASN SEQRES 33 A 445 LEU ALA ALA ASN PHE ASN GLY GLN ASN THR GLU ILE ASN SEQRES 34 A 445 ASN MET ASN PHE THR LYS LEU LYS ASN PHE THR GLY LEU SEQRES 35 A 445 PHE GLU PHE MODRES 4KUF 0QL A 165 CYS 3-[(2-AMINOETHYL)DISULFANYL]-L-ALANINE HET 0QL A 165 10 HET ZN A 501 1 HET DMS A 502 4 HET DMS A 503 4 HET DMS A 504 4 HET DMS A 505 4 HET LMR A 506 9 HET GOL A 507 6 HET EDO A 508 4 HET EDO A 509 4 HET EDO A 510 4 HET EDO A 511 4 HET EDO A 512 4 HET EDO A 513 4 HET EDO A 514 4 HET EDO A 515 4 HET EDO A 516 4 HET NA A 517 1 HET NA A 518 1 HETNAM 0QL 3-[(2-AMINOETHYL)DISULFANYL]-L-ALANINE HETNAM ZN ZINC ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM LMR (2S)-2-HYDROXYBUTANEDIOIC ACID HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETSYN 0QL CYS-MTSEA HETSYN LMR L-MALATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 0QL C5 H12 N2 O2 S2 FORMUL 2 ZN ZN 2+ FORMUL 3 DMS 4(C2 H6 O S) FORMUL 7 LMR C4 H6 O5 FORMUL 8 GOL C3 H8 O3 FORMUL 9 EDO 9(C2 H6 O2) FORMUL 18 NA 2(NA 1+) FORMUL 20 HOH *332(H2 O) HELIX 1 1 THR A 80 SER A 100 1 21 HELIX 2 2 THR A 101 GLY A 114 1 14 HELIX 3 3 ILE A 130 THR A 132 5 3 HELIX 4 4 SER A 199 THR A 204 1 6 HELIX 5 5 ASP A 216 TYR A 233 1 18 HELIX 6 6 ASN A 248 SER A 254 1 7 HELIX 7 7 PHE A 260 GLY A 267 1 8 HELIX 8 8 HIS A 269 ILE A 274 5 6 HELIX 9 9 ASP A 275 ALA A 300 1 26 HELIX 10 10 SER A 309 TYR A 321 1 13 HELIX 11 11 ASP A 334 GLU A 347 1 14 HELIX 12 12 THR A 350 LYS A 359 1 10 HELIX 13 13 PHE A 401 ASN A 405 5 5 HELIX 14 14 ASN A 409 PHE A 413 5 5 SHEET 1 A 7 TYR A 144 GLU A 148 0 SHEET 2 A 7 SER A 134 ILE A 138 -1 N ILE A 135 O GLU A 147 SHEET 3 A 7 ILE A 19 LYS A 23 -1 N TYR A 21 O ILE A 138 SHEET 4 A 7 VAL A 33 HIS A 39 -1 O ALA A 35 N ALA A 20 SHEET 5 A 7 ILE A 42 ARG A 48 -1 O VAL A 44 N PHE A 36 SHEET 6 A 7 LEU A 151 GLY A 155 1 O ILE A 153 N ILE A 45 SHEET 7 A 7 GLN A 184 ARG A 187 1 O ILE A 186 N ILE A 154 SHEET 1 B 2 GLU A 126 LYS A 128 0 SHEET 2 B 2 SER A 302 VAL A 304 1 O SER A 302 N LEU A 127 SHEET 1 C 4 PHE A 213 ALA A 214 0 SHEET 2 C 4 PHE A 192 PHE A 196 -1 N PHE A 196 O PHE A 213 SHEET 3 C 4 ALA A 372 LYS A 375 -1 O PHE A 374 N THR A 193 SHEET 4 C 4 THR A 414 ASN A 418 -1 O THR A 414 N LYS A 375 SHEET 1 D 2 VAL A 242 LYS A 244 0 SHEET 2 D 2 GLU A 257 SER A 259 -1 O VAL A 258 N PHE A 243 SHEET 1 E 2 SER A 324 GLU A 325 0 SHEET 2 E 2 PHE A 331 SER A 332 -1 O SER A 332 N SER A 324 LINK C GLU A 164 N 0QL A 165 1555 1555 1.33 LINK C 0QL A 165 N LYS A 166 1555 1555 1.34 LINK NE2 HIS A 223 ZN ZN A 501 1555 1555 2.07 LINK NE2 HIS A 227 ZN ZN A 501 1555 1555 2.06 LINK OE1 GLU A 262 ZN ZN A 501 1555 1555 2.04 LINK OE2 GLU A 262 ZN ZN A 501 1555 1555 2.63 LINK OD1 ASP A 352 NA NA A 517 1555 1555 2.88 LINK O ARG A 363 NA NA A 517 1555 1555 3.00 LINK O ASN A 410 NA NA A 518 1555 1555 3.15 LINK O PHE A 413 NA NA A 518 1555 1555 2.88 LINK ZN ZN A 501 O HOH A 829 1555 1555 2.61 LINK ZN ZN A 501 O HOH A 894 1555 1555 1.90 LINK NA NA A 517 O HOH A 696 1555 1555 2.28 LINK NA NA A 518 O HOH A 817 1555 1555 2.60 LINK NA NA A 518 O HOH A 883 1555 1555 2.37 SITE 1 AC1 5 HIS A 223 HIS A 227 GLU A 262 HOH A 829 SITE 2 AC1 5 HOH A 894 SITE 1 AC2 4 HIS A 39 THR A 109 VAL A 112 HOH A 671 SITE 1 AC3 3 ASN A 238 TYR A 285 TYR A 286 SITE 1 AC4 4 MET A 411 ASN A 412 THR A 414 HOH A 901 SITE 1 AC5 3 LEU A 200 LYS A 340 HOH A 855 SITE 1 AC6 9 ARG A 97 SER A 100 PHE A 357 LYS A 359 SITE 2 AC6 9 ILE A 386 TYR A 387 HOH A 831 HOH A 844 SITE 3 AC6 9 HOH A 846 SITE 1 AC7 5 HIS A 0 TYR A 99 SER A 100 ASP A 102 SITE 2 AC7 5 ARG A 105 SITE 1 AC8 3 ASP A 339 EDO A 511 HOH A 881 SITE 1 AC9 2 SER A 110 HOH A 909 SITE 1 BC1 5 PRO A 156 ILE A 160 PHE A 188 SER A 189 SITE 2 BC1 5 HOH A 843 SITE 1 BC2 4 ASP A 339 ASN A 400 ASN A 402 EDO A 508 SITE 1 BC3 1 GLN A 139 SITE 1 BC4 4 0QL A 165 ASN A 368 ASP A 370 PHE A 423 SITE 1 BC5 4 PRO A 140 ASP A 141 EDO A 515 HOH A 906 SITE 1 BC6 4 LEU A 416 EDO A 514 HOH A 722 HOH A 775 SITE 1 BC7 4 THR A 80 ASP A 81 HOH A 671 HOH A 790 SITE 1 BC8 6 PHE A 266 ASP A 352 VAL A 355 ASN A 362 SITE 2 BC8 6 ARG A 363 HOH A 696 SITE 1 BC9 5 ASN A 410 PHE A 413 HOH A 622 HOH A 817 SITE 2 BC9 5 HOH A 883 CRYST1 65.460 65.460 201.620 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015277 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015277 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004960 0.00000