HEADER TRANSFERASE 22-MAY-13 4KUJ TITLE STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF A NOVEL ALPHA KINASE TITLE 2 FROM ENTAMOEBA HISTOLYTICA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN KINASE, PUTATIVE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-280; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTAMOEBA HISTOLYTICA; SOURCE 3 ORGANISM_TAXID: 885319; SOURCE 4 STRAIN: HM-1, IMSS-B; SOURCE 5 GENE: EHI8A_073090; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET(28B) KEYWDS ACTIN, PHOSPHORYLATED ACTIN, PHOSPHORYLATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.A.A.REHMAN,K.F.TARIQUE,A.BHATTACHARYA,S.GOURINATH,M.S.MANSURI REVDAT 2 02-DEC-20 4KUJ 1 AUTHOR JRNL REMARK SEQADV REVDAT 2 2 1 LINK REVDAT 1 28-MAY-14 4KUJ 0 JRNL AUTH S.A.A.REHMAN,K.F.TARIQUE,A.BHATTACHARYA,S.GOURINATH, JRNL AUTH 2 M.S.MANSURI JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF A NOVEL ALPHA JRNL TITL 2 KINASE FROM ENTAMOEBA HISTOLYTICA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 36985 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1955 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2341 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 131 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4328 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 147 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.49000 REMARK 3 B22 (A**2) : -0.54000 REMARK 3 B33 (A**2) : 1.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.206 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.169 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.156 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4447 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6044 ; 1.469 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 529 ; 6.004 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 223 ;35.439 ;24.260 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 734 ;17.538 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;25.495 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 666 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3396 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4KUJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000079811. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36985 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.46400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.880 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, TRIS PH7.5, 150MM NACL, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.52850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.46000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.81700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.46000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.52850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.81700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -25.52850 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -61.46000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ARG A 3 REMARK 465 ASP A 4 REMARK 465 MET A 5 REMARK 465 MET A 6 REMARK 465 VAL A 7 REMARK 465 ASP A 8 REMARK 465 PRO A 9 REMARK 465 LEU A 10 REMARK 465 LEU A 11 REMARK 465 SER A 12 REMARK 465 GLU A 13 REMARK 465 LYS A 14 REMARK 465 GLU A 15 REMARK 465 PRO A 16 REMARK 465 GLN A 17 REMARK 465 LEU A 281 REMARK 465 GLU A 282 REMARK 465 HIS A 283 REMARK 465 HIS A 284 REMARK 465 HIS A 285 REMARK 465 HIS A 286 REMARK 465 HIS A 287 REMARK 465 HIS A 288 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ARG B 3 REMARK 465 ASP B 4 REMARK 465 MET B 5 REMARK 465 MET B 6 REMARK 465 VAL B 7 REMARK 465 ASP B 8 REMARK 465 PRO B 9 REMARK 465 LEU B 10 REMARK 465 LEU B 11 REMARK 465 SER B 12 REMARK 465 GLU B 13 REMARK 465 LYS B 14 REMARK 465 HIS B 283 REMARK 465 HIS B 284 REMARK 465 HIS B 285 REMARK 465 HIS B 286 REMARK 465 HIS B 287 REMARK 465 HIS B 288 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 78 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 78 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 158 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 178 30.02 -154.02 REMARK 500 GLU A 185 45.31 -97.28 REMARK 500 CYS A 208 -153.95 -149.73 REMARK 500 GLN B 17 78.96 -115.06 REMARK 500 ASN B 43 42.57 -103.90 REMARK 500 SER B 134 124.93 -170.97 REMARK 500 ASN B 178 31.27 -149.46 REMARK 500 CYS B 208 -154.57 -143.09 REMARK 500 ASN B 216 -122.30 59.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 195 ND1 REMARK 620 2 HIS A 253 NE2 102.9 REMARK 620 3 CYS A 255 SG 97.2 110.8 REMARK 620 4 CYS A 259 SG 121.1 107.2 116.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 195 ND1 REMARK 620 2 HIS B 253 NE2 100.3 REMARK 620 3 CYS B 255 SG 96.7 110.6 REMARK 620 4 CYS B 259 SG 121.8 111.2 114.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KVE RELATED DB: PDB DBREF 4KUJ A 1 280 UNP M3TP73 M3TP73_ENTHI 1 280 DBREF 4KUJ B 1 280 UNP M3TP73 M3TP73_ENTHI 1 280 SEQADV 4KUJ LEU A 281 UNP M3TP73 EXPRESSION TAG SEQADV 4KUJ GLU A 282 UNP M3TP73 EXPRESSION TAG SEQADV 4KUJ HIS A 283 UNP M3TP73 EXPRESSION TAG SEQADV 4KUJ HIS A 284 UNP M3TP73 EXPRESSION TAG SEQADV 4KUJ HIS A 285 UNP M3TP73 EXPRESSION TAG SEQADV 4KUJ HIS A 286 UNP M3TP73 EXPRESSION TAG SEQADV 4KUJ HIS A 287 UNP M3TP73 EXPRESSION TAG SEQADV 4KUJ HIS A 288 UNP M3TP73 EXPRESSION TAG SEQADV 4KUJ LEU B 281 UNP M3TP73 EXPRESSION TAG SEQADV 4KUJ GLU B 282 UNP M3TP73 EXPRESSION TAG SEQADV 4KUJ HIS B 283 UNP M3TP73 EXPRESSION TAG SEQADV 4KUJ HIS B 284 UNP M3TP73 EXPRESSION TAG SEQADV 4KUJ HIS B 285 UNP M3TP73 EXPRESSION TAG SEQADV 4KUJ HIS B 286 UNP M3TP73 EXPRESSION TAG SEQADV 4KUJ HIS B 287 UNP M3TP73 EXPRESSION TAG SEQADV 4KUJ HIS B 288 UNP M3TP73 EXPRESSION TAG SEQRES 1 A 288 MET SER ARG ASP MET MET VAL ASP PRO LEU LEU SER GLU SEQRES 2 A 288 LYS GLU PRO GLN TYR GLN THR GLN VAL SER GLY TYR ILE SEQRES 3 A 288 ILE THR VAL PRO ASN GLU THR THR GLN ILE ARG LYS PHE SEQRES 4 A 288 LEU ALA SER ASN GLN ARG ILE ASN GLN PHE LEU PHE GLN SEQRES 5 A 288 HIS SER THR PHE ARG VAL GLU LEU ALA PRO PHE ALA LYS SEQRES 6 A 288 GLY GLY GLU ARG LEU ALA PHE ARG ALA ILE ASN GLY ARG SEQRES 7 A 288 GLY ASP ARG ILE VAL LEU LYS ARG PHE PHE GLN GLN ARG SEQRES 8 A 288 PRO LEU THR MET LEU LEU GLU THR ILE GLU ARG GLN LEU SEQRES 9 A 288 ILE CYS ILE TYR LEU ALA ASN ILE PHE ASN LYS LEU ASN SEQRES 10 A 288 VAL SER PRO ASN LYS LEU HIS PHE LEU PRO ASN TYR LEU SEQRES 11 A 288 PHE ILE PRO SER PRO THR LYS ASP LEU ASP GLY LYS ILE SEQRES 12 A 288 LEU THR LEU GLU GLN THR GLU GLN ALA VAL ALA ALA THR SEQRES 13 A 288 CYS ARG THR PRO ASN PHE VAL GLU PRO TYR LEU SER GLY SEQRES 14 A 288 TYR PHE ILE LYS TYR ILE ASP ASN ASN GLY TRP ILE ASN SEQRES 15 A 288 GLU SER GLU PHE HIS SER THR LEU HIS ALA PHE ALA HIS SEQRES 16 A 288 TRP THR TRP VAL HIS THR LYS GLY ALA LEU LEU ILE CYS SEQRES 17 A 288 ASP ILE GLN GLY VAL ASN ALA ASN ASN LYS PHE TYR LEU SEQRES 18 A 288 THR ASP PRO ALA LEU HIS HIS ILE ASP GLN ASN LYS PHE SEQRES 19 A 288 ILE TYR SER GLU THR ASN LEU GLY GLU VAL GLY ILE SER SEQRES 20 A 288 GLN PHE PHE ARG THR HIS GLN CYS ASN ALA ILE CYS GLN SEQRES 21 A 288 GLY LEU HIS LEU PRO LYS HIS LYS GLU GLN VAL LEU PRO SEQRES 22 A 288 ASP TPO THR LYS GLY TPO THR LEU GLU HIS HIS HIS HIS SEQRES 23 A 288 HIS HIS SEQRES 1 B 288 MET SER ARG ASP MET MET VAL ASP PRO LEU LEU SER GLU SEQRES 2 B 288 LYS GLU PRO GLN TYR GLN THR GLN VAL SER GLY TYR ILE SEQRES 3 B 288 ILE THR VAL PRO ASN GLU THR THR GLN ILE ARG LYS PHE SEQRES 4 B 288 LEU ALA SER ASN GLN ARG ILE ASN GLN PHE LEU PHE GLN SEQRES 5 B 288 HIS SER THR PHE ARG VAL GLU LEU ALA PRO PHE ALA LYS SEQRES 6 B 288 GLY GLY GLU ARG LEU ALA PHE ARG ALA ILE ASN GLY ARG SEQRES 7 B 288 GLY ASP ARG ILE VAL LEU LYS ARG PHE PHE GLN GLN ARG SEQRES 8 B 288 PRO LEU THR MET LEU LEU GLU THR ILE GLU ARG GLN LEU SEQRES 9 B 288 ILE CYS ILE TYR LEU ALA ASN ILE PHE ASN LYS LEU ASN SEQRES 10 B 288 VAL SER PRO ASN LYS LEU HIS PHE LEU PRO ASN TYR LEU SEQRES 11 B 288 PHE ILE PRO SER PRO THR LYS ASP LEU ASP GLY LYS ILE SEQRES 12 B 288 LEU THR LEU GLU GLN THR GLU GLN ALA VAL ALA ALA THR SEQRES 13 B 288 CYS ARG THR PRO ASN PHE VAL GLU PRO TYR LEU SER GLY SEQRES 14 B 288 TYR PHE ILE LYS TYR ILE ASP ASN ASN GLY TRP ILE ASN SEQRES 15 B 288 GLU SER GLU PHE HIS SER THR LEU HIS ALA PHE ALA HIS SEQRES 16 B 288 TRP THR TRP VAL HIS THR LYS GLY ALA LEU LEU ILE CYS SEQRES 17 B 288 ASP ILE GLN GLY VAL ASN ALA ASN ASN LYS PHE TYR LEU SEQRES 18 B 288 THR ASP PRO ALA LEU HIS HIS ILE ASP GLN ASN LYS PHE SEQRES 19 B 288 ILE TYR SER GLU THR ASN LEU GLY GLU VAL GLY ILE SER SEQRES 20 B 288 GLN PHE PHE ARG THR HIS GLN CYS ASN ALA ILE CYS GLN SEQRES 21 B 288 GLY LEU HIS LEU PRO LYS HIS LYS GLU GLN VAL LEU PRO SEQRES 22 B 288 ASP TPO THR LYS GLY TPO THR LEU GLU HIS HIS HIS HIS SEQRES 23 B 288 HIS HIS MODRES 4KUJ TPO A 275 THR PHOSPHOTHREONINE MODRES 4KUJ TPO A 279 THR PHOSPHOTHREONINE MODRES 4KUJ TPO B 275 THR PHOSPHOTHREONINE MODRES 4KUJ TPO B 279 THR PHOSPHOTHREONINE HET TPO A 275 11 HET TPO A 279 11 HET TPO B 275 11 HET TPO B 279 11 HET ZN A 301 1 HET PEG A 302 7 HET ZN B 301 1 HETNAM TPO PHOSPHOTHREONINE HETNAM ZN ZINC ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 TPO 4(C4 H10 N O6 P) FORMUL 3 ZN 2(ZN 2+) FORMUL 4 PEG C4 H10 O3 FORMUL 6 HOH *147(H2 O) HELIX 1 1 ASN A 31 SER A 42 1 12 HELIX 2 2 PRO A 92 LEU A 116 1 25 HELIX 3 3 THR A 145 CYS A 157 1 13 HELIX 4 4 HIS A 187 THR A 201 1 15 HELIX 5 5 LEU A 241 HIS A 253 1 13 HELIX 6 6 ASN A 256 LEU A 262 1 7 HELIX 7 7 ASN B 31 SER B 42 1 12 HELIX 8 8 PRO B 92 ASN B 117 1 26 HELIX 9 9 THR B 145 CYS B 157 1 13 HELIX 10 10 HIS B 187 THR B 201 1 15 HELIX 11 11 LEU B 241 THR B 252 1 12 HELIX 12 12 ASN B 256 LEU B 262 1 7 SHEET 1 A 4 ALA A 64 GLY A 66 0 SHEET 2 A 4 ARG A 69 ILE A 75 -1 O ALA A 71 N ALA A 64 SHEET 3 A 4 PHE A 49 GLU A 59 -1 N ARG A 57 O ILE A 75 SHEET 4 A 4 ILE A 143 LEU A 144 -1 O LEU A 144 N PHE A 49 SHEET 1 B 8 ALA A 64 GLY A 66 0 SHEET 2 B 8 ARG A 69 ILE A 75 -1 O ALA A 71 N ALA A 64 SHEET 3 B 8 ARG A 81 PHE A 87 -1 O LEU A 84 N PHE A 72 SHEET 4 B 8 ASN A 161 PRO A 165 -1 O PHE A 162 N LYS A 85 SHEET 5 B 8 TYR A 129 PRO A 133 -1 N TYR A 129 O VAL A 163 SHEET 6 B 8 GLN A 19 THR A 28 -1 N ILE A 27 O LEU A 130 SHEET 7 B 8 PHE A 49 GLU A 59 -1 O PHE A 56 N VAL A 22 SHEET 8 B 8 ILE A 143 LEU A 144 -1 O LEU A 144 N PHE A 49 SHEET 1 C 4 LYS A 122 PHE A 125 0 SHEET 2 C 4 LYS A 218 LEU A 221 1 O PHE A 219 N HIS A 124 SHEET 3 C 4 ILE A 210 ASN A 214 -1 N VAL A 213 O TYR A 220 SHEET 4 C 4 ILE A 172 ILE A 175 -1 N ILE A 172 O GLY A 212 SHEET 1 D 2 LEU A 205 CYS A 208 0 SHEET 2 D 2 ALA A 225 HIS A 228 -1 O ALA A 225 N CYS A 208 SHEET 1 E 8 ILE B 143 LEU B 144 0 SHEET 2 E 8 PHE B 49 GLU B 59 -1 N PHE B 49 O LEU B 144 SHEET 3 E 8 ARG B 69 ILE B 75 -1 O ARG B 73 N GLU B 59 SHEET 4 E 8 ARG B 81 PHE B 87 -1 O ILE B 82 N ALA B 74 SHEET 5 E 8 ASN B 161 PRO B 165 -1 O GLU B 164 N VAL B 83 SHEET 6 E 8 TYR B 129 PRO B 133 -1 N PHE B 131 O ASN B 161 SHEET 7 E 8 TYR B 18 THR B 28 -1 N ILE B 27 O LEU B 130 SHEET 8 E 8 PHE B 49 GLU B 59 -1 O VAL B 58 N THR B 20 SHEET 1 F 4 LYS B 122 PHE B 125 0 SHEET 2 F 4 LYS B 218 LEU B 221 1 O LEU B 221 N HIS B 124 SHEET 3 F 4 GLN B 211 ALA B 215 -1 N VAL B 213 O TYR B 220 SHEET 4 F 4 ILE B 172 LYS B 173 -1 N ILE B 172 O GLY B 212 SHEET 1 G 2 LEU B 205 CYS B 208 0 SHEET 2 G 2 ALA B 225 HIS B 228 -1 O ALA B 225 N CYS B 208 SSBOND 1 CYS A 157 CYS B 157 1555 2454 2.24 LINK C ASP A 274 N TPO A 275 1555 1555 1.33 LINK C TPO A 275 N THR A 276 1555 1555 1.33 LINK C GLY A 278 N TPO A 279 1555 1555 1.33 LINK C TPO A 279 N THR A 280 1555 1555 1.32 LINK C ASP B 274 N TPO B 275 1555 1555 1.33 LINK C TPO B 275 N THR B 276 1555 1555 1.33 LINK C GLY B 278 N TPO B 279 1555 1555 1.33 LINK C TPO B 279 N THR B 280 1555 1555 1.33 LINK ND1 HIS A 195 ZN ZN A 301 1555 1555 2.08 LINK NE2 HIS A 253 ZN ZN A 301 1555 1555 2.07 LINK SG CYS A 255 ZN ZN A 301 1555 1555 2.34 LINK SG CYS A 259 ZN ZN A 301 1555 1555 2.23 LINK ND1 HIS B 195 ZN ZN B 301 1555 1555 2.00 LINK NE2 HIS B 253 ZN ZN B 301 1555 1555 2.05 LINK SG CYS B 255 ZN ZN B 301 1555 1555 2.35 LINK SG CYS B 259 ZN ZN B 301 1555 1555 2.14 CISPEP 1 LYS B 65 GLY B 66 0 14.26 SITE 1 AC1 4 HIS A 195 HIS A 253 CYS A 255 CYS A 259 SITE 1 AC2 5 GLY A 66 ARG A 69 ALA A 71 LYS A 85 SITE 2 AC2 5 GLU A 164 SITE 1 AC3 4 HIS B 195 HIS B 253 CYS B 255 CYS B 259 CRYST1 51.057 89.634 122.920 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019586 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011156 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008135 0.00000