HEADER PROTEIN TRANSPORT 22-MAY-13 4KV3 TITLE UBIQUITIN-LIKE DOMAIN OF THE MYCOBACTERIUM TUBERCULOSIS TYPE VII TITLE 2 SECRETION SYSTEM PROTEIN ECCD1 AS MALTOSE-BINDING PROTEIN FUSION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHIMERA FUSION PROTEIN OF ESX-1 SECRETION SYSTEM PROTEIN COMPND 3 ECCD1 AND MALTOSE-BINDING PERIPLASMIC PROTEIN; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: MBP, MMBP, MALTODEXTRIN-BINDING PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI, MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83333, 83332; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ESX-1, ESX, SNM4, UBIQUITIN, YUKD, PF08817, MEMBRANE PROTEIN, PROTEIN KEYWDS 2 SECRETION, MBP FUSION, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR K.V.KOROTKOV,T.J.EVANS REVDAT 5 20-SEP-23 4KV3 1 HETSYN REVDAT 4 29-JUL-20 4KV3 1 COMPND REMARK SEQADV HET REVDAT 4 2 1 HETNAM FORMUL LINK SITE REVDAT 4 3 1 ATOM REVDAT 3 26-JUL-17 4KV3 1 SOURCE REMARK REVDAT 2 23-MAR-16 4KV3 1 JRNL REVDAT 1 09-APR-14 4KV3 0 JRNL AUTH J.M.WAGNER,S.CHAN,T.J.EVANS,S.KAHNG,J.KIM,M.A.ARBING, JRNL AUTH 2 D.EISENBERG,K.V.KOROTKOV JRNL TITL STRUCTURES OF ECCB1 AND ECCD1 FROM THE CORE COMPLEX OF THE JRNL TITL 2 MYCOBACTERIAL ESX-1 TYPE VII SECRETION SYSTEM. JRNL REF BMC STRUCT.BIOL. V. 16 5 2016 JRNL REFN ESSN 1472-6807 JRNL PMID 26922638 JRNL DOI 10.1186/S12900-016-0056-6 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 53741 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2862 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3960 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 199 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6970 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 418 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.57 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.22000 REMARK 3 B22 (A**2) : -0.22000 REMARK 3 B33 (A**2) : 0.72000 REMARK 3 B12 (A**2) : -0.22000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.203 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.170 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.127 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.507 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7180 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 6832 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9784 ; 1.319 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15796 ; 0.762 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 910 ; 5.762 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 296 ;35.462 ;25.676 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1156 ;14.818 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;18.803 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1110 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8122 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1500 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3646 ; 1.419 ; 2.417 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3645 ; 1.419 ; 2.416 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4554 ; 2.347 ; 3.620 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 308 REMARK 3 ORIGIN FOR THE GROUP (A): 17.2440 40.9800 -39.5350 REMARK 3 T TENSOR REMARK 3 T11: 0.1079 T22: 0.0824 REMARK 3 T33: 0.0615 T12: 0.0350 REMARK 3 T13: 0.0036 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 2.5751 L22: 0.4001 REMARK 3 L33: 1.1673 L12: -0.1330 REMARK 3 L13: 0.9254 L23: -0.2157 REMARK 3 S TENSOR REMARK 3 S11: 0.0331 S12: 0.1340 S13: -0.1496 REMARK 3 S21: -0.0754 S22: -0.0184 S23: 0.0733 REMARK 3 S31: 0.1333 S32: 0.0713 S33: -0.0146 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 309 A 369 REMARK 3 ORIGIN FOR THE GROUP (A): 17.4320 44.8300 -30.4000 REMARK 3 T TENSOR REMARK 3 T11: 0.1381 T22: 0.1555 REMARK 3 T33: 0.1312 T12: 0.0863 REMARK 3 T13: -0.0059 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 3.9010 L22: 0.6682 REMARK 3 L33: 1.4387 L12: 0.0264 REMARK 3 L13: 2.2559 L23: -0.2065 REMARK 3 S TENSOR REMARK 3 S11: -0.1087 S12: -0.4382 S13: 0.3607 REMARK 3 S21: -0.0414 S22: -0.0610 S23: 0.0527 REMARK 3 S31: 0.0264 S32: -0.1761 S33: 0.1697 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 373 A 461 REMARK 3 ORIGIN FOR THE GROUP (A): -14.2510 58.9720 -12.3740 REMARK 3 T TENSOR REMARK 3 T11: 0.1212 T22: 0.0812 REMARK 3 T33: 0.0810 T12: -0.0475 REMARK 3 T13: 0.0274 T23: -0.0314 REMARK 3 L TENSOR REMARK 3 L11: 3.1347 L22: 1.8135 REMARK 3 L33: 1.5302 L12: 0.7054 REMARK 3 L13: -0.2500 L23: -0.9311 REMARK 3 S TENSOR REMARK 3 S11: -0.0093 S12: -0.1204 S13: 0.2308 REMARK 3 S21: 0.2839 S22: 0.0505 S23: 0.2188 REMARK 3 S31: -0.1559 S32: -0.0539 S33: -0.0412 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 310 REMARK 3 ORIGIN FOR THE GROUP (A): -30.4040 31.8860 -5.6650 REMARK 3 T TENSOR REMARK 3 T11: 0.1353 T22: 0.0839 REMARK 3 T33: 0.0946 T12: -0.0641 REMARK 3 T13: -0.0098 T23: -0.0262 REMARK 3 L TENSOR REMARK 3 L11: 2.9189 L22: 1.3880 REMARK 3 L33: 0.8906 L12: 1.6374 REMARK 3 L13: 1.0314 L23: 0.6328 REMARK 3 S TENSOR REMARK 3 S11: 0.0302 S12: -0.0750 S13: -0.0558 REMARK 3 S21: 0.0862 S22: -0.0404 S23: 0.0017 REMARK 3 S31: 0.1620 S32: -0.0061 S33: 0.0102 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 311 B 371 REMARK 3 ORIGIN FOR THE GROUP (A): -32.3620 37.0990 -15.1700 REMARK 3 T TENSOR REMARK 3 T11: 0.1974 T22: 0.1758 REMARK 3 T33: 0.1416 T12: -0.1429 REMARK 3 T13: -0.0503 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 2.9777 L22: 2.1658 REMARK 3 L33: 0.5114 L12: 1.4770 REMARK 3 L13: 1.1478 L23: 0.4589 REMARK 3 S TENSOR REMARK 3 S11: -0.2636 S12: 0.4111 S13: 0.2888 REMARK 3 S21: -0.1968 S22: 0.2042 S23: 0.1620 REMARK 3 S31: -0.0038 S32: 0.1236 S33: 0.0595 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 372 B 461 REMARK 3 ORIGIN FOR THE GROUP (A): -7.8530 59.8820 -33.0940 REMARK 3 T TENSOR REMARK 3 T11: 0.1209 T22: 0.1470 REMARK 3 T33: 0.1065 T12: 0.0058 REMARK 3 T13: -0.0292 T23: 0.0722 REMARK 3 L TENSOR REMARK 3 L11: 3.2038 L22: 3.2772 REMARK 3 L33: 0.8410 L12: -0.3945 REMARK 3 L13: -0.2392 L23: -0.5583 REMARK 3 S TENSOR REMARK 3 S11: 0.1065 S12: 0.2281 S13: 0.3697 REMARK 3 S21: -0.2931 S22: -0.2414 S23: -0.1037 REMARK 3 S31: -0.0218 S32: -0.0320 S33: 0.1349 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4KV3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000079831. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56556 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.50 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.50 REMARK 200 R MERGE FOR SHELL (I) : 1.09700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.880 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: PDB ENTRY 1ANF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5, 1.4M SODIUM REMARK 280 CITRATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.99333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.49667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 62.24500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 20.74833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 103.74167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ILE A 3 REMARK 465 GLU A 4 REMARK 465 GLU A 5 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 ILE B 3 REMARK 465 GLU B 4 REMARK 465 GLU B 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 91 OE1 GLU B 309 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 67 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 169 -80.44 -85.08 REMARK 500 GLU A 173 149.40 -174.60 REMARK 500 ASP A 210 -167.17 -117.87 REMARK 500 TYR A 284 -54.25 -123.05 REMARK 500 ALA A 370 58.19 -93.48 REMARK 500 ALA A 371 -94.41 -39.75 REMARK 500 MET A 372 62.91 -112.82 REMARK 500 LEU B 123 83.15 -150.18 REMARK 500 ALA B 169 -77.79 -86.57 REMARK 500 ASN B 174 65.47 21.01 REMARK 500 GLN B 427 42.94 -92.26 REMARK 500 REMARK 500 REMARK: NULL DBREF 4KV3 A 2 367 UNP P0AEX9 MALE_ECOLI 27 392 DBREF 4KV3 A 373 461 UNP I6X8K0 I6X8K0_MYCTU 21 109 DBREF 4KV3 B 2 367 UNP P0AEX9 MALE_ECOLI 27 392 DBREF 4KV3 B 373 461 UNP I6X8K0 I6X8K0_MYCTU 21 109 SEQADV 4KV3 MET A 1 UNP P0AEX9 EXPRESSION TAG SEQADV 4KV3 ALA A 360 UNP P0AEX9 GLU 385 ENGINEERED MUTATION SEQADV 4KV3 ALA A 363 UNP P0AEX9 LYS 388 ENGINEERED MUTATION SEQADV 4KV3 ALA A 364 UNP P0AEX9 ASP 389 ENGINEERED MUTATION SEQADV 4KV3 ASN A 368 UNP P0AEX9 LINKER SEQADV 4KV3 ALA A 369 UNP P0AEX9 LINKER SEQADV 4KV3 ALA A 370 UNP P0AEX9 LINKER SEQADV 4KV3 ALA A 371 UNP P0AEX9 LINKER SEQADV 4KV3 MET A 372 UNP P0AEX9 LINKER SEQADV 4KV3 MET B 1 UNP P0AEX9 EXPRESSION TAG SEQADV 4KV3 ALA B 360 UNP P0AEX9 GLU 385 ENGINEERED MUTATION SEQADV 4KV3 ALA B 363 UNP P0AEX9 LYS 388 ENGINEERED MUTATION SEQADV 4KV3 ALA B 364 UNP P0AEX9 ASP 389 ENGINEERED MUTATION SEQADV 4KV3 ASN B 368 UNP P0AEX9 LINKER SEQADV 4KV3 ALA B 369 UNP P0AEX9 LINKER SEQADV 4KV3 ALA B 370 UNP P0AEX9 LINKER SEQADV 4KV3 ALA B 371 UNP P0AEX9 LINKER SEQADV 4KV3 MET B 372 UNP P0AEX9 LINKER SEQRES 1 A 461 MET LYS ILE GLU GLU GLY LYS LEU VAL ILE TRP ILE ASN SEQRES 2 A 461 GLY ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY LYS SEQRES 3 A 461 LYS PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL GLU SEQRES 4 A 461 HIS PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL ALA SEQRES 5 A 461 ALA THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA HIS SEQRES 6 A 461 ASP ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU ALA SEQRES 7 A 461 GLU ILE THR PRO ASP LYS ALA PHE GLN ASP LYS LEU TYR SEQRES 8 A 461 PRO PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS LEU SEQRES 9 A 461 ILE ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU ILE SEQRES 10 A 461 TYR ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR TRP SEQRES 11 A 461 GLU GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA LYS SEQRES 12 A 461 GLY LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO TYR SEQRES 13 A 461 PHE THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR ALA SEQRES 14 A 461 PHE LYS TYR GLU ASN GLY LYS TYR ASP ILE LYS ASP VAL SEQRES 15 A 461 GLY VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR PHE SEQRES 16 A 461 LEU VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA ASP SEQRES 17 A 461 THR ASP TYR SER ILE ALA GLU ALA ALA PHE ASN LYS GLY SEQRES 18 A 461 GLU THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SER SEQRES 19 A 461 ASN ILE ASP THR SER LYS VAL ASN TYR GLY VAL THR VAL SEQRES 20 A 461 LEU PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE VAL SEQRES 21 A 461 GLY VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO ASN SEQRES 22 A 461 LYS GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU LEU SEQRES 23 A 461 THR ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS PRO SEQRES 24 A 461 LEU GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU LEU SEQRES 25 A 461 ALA LYS ASP PRO ARG ILE ALA ALA THR MET GLU ASN ALA SEQRES 26 A 461 GLN LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SER SEQRES 27 A 461 ALA PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN ALA SEQRES 28 A 461 ALA SER GLY ARG GLN THR VAL ASP ALA ALA LEU ALA ALA SEQRES 29 A 461 ALA GLN THR ASN ALA ALA ALA MET ALA THR THR ARG VAL SEQRES 30 A 461 THR ILE LEU THR GLY ARG ARG MET THR ASP LEU VAL LEU SEQRES 31 A 461 PRO ALA ALA VAL PRO MET GLU THR TYR ILE ASP ASP THR SEQRES 32 A 461 VAL ALA VAL LEU SER GLU VAL LEU GLU ASP THR PRO ALA SEQRES 33 A 461 ASP VAL LEU GLY GLY PHE ASP PHE THR ALA GLN GLY VAL SEQRES 34 A 461 TRP ALA PHE ALA ARG PRO GLY SER PRO PRO LEU LYS LEU SEQRES 35 A 461 ASP GLN SER LEU ASP ASP ALA GLY VAL VAL ASP GLY SER SEQRES 36 A 461 LEU LEU THR LEU VAL SER SEQRES 1 B 461 MET LYS ILE GLU GLU GLY LYS LEU VAL ILE TRP ILE ASN SEQRES 2 B 461 GLY ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY LYS SEQRES 3 B 461 LYS PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL GLU SEQRES 4 B 461 HIS PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL ALA SEQRES 5 B 461 ALA THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA HIS SEQRES 6 B 461 ASP ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU ALA SEQRES 7 B 461 GLU ILE THR PRO ASP LYS ALA PHE GLN ASP LYS LEU TYR SEQRES 8 B 461 PRO PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS LEU SEQRES 9 B 461 ILE ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU ILE SEQRES 10 B 461 TYR ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR TRP SEQRES 11 B 461 GLU GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA LYS SEQRES 12 B 461 GLY LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO TYR SEQRES 13 B 461 PHE THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR ALA SEQRES 14 B 461 PHE LYS TYR GLU ASN GLY LYS TYR ASP ILE LYS ASP VAL SEQRES 15 B 461 GLY VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR PHE SEQRES 16 B 461 LEU VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA ASP SEQRES 17 B 461 THR ASP TYR SER ILE ALA GLU ALA ALA PHE ASN LYS GLY SEQRES 18 B 461 GLU THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SER SEQRES 19 B 461 ASN ILE ASP THR SER LYS VAL ASN TYR GLY VAL THR VAL SEQRES 20 B 461 LEU PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE VAL SEQRES 21 B 461 GLY VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO ASN SEQRES 22 B 461 LYS GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU LEU SEQRES 23 B 461 THR ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS PRO SEQRES 24 B 461 LEU GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU LEU SEQRES 25 B 461 ALA LYS ASP PRO ARG ILE ALA ALA THR MET GLU ASN ALA SEQRES 26 B 461 GLN LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SER SEQRES 27 B 461 ALA PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN ALA SEQRES 28 B 461 ALA SER GLY ARG GLN THR VAL ASP ALA ALA LEU ALA ALA SEQRES 29 B 461 ALA GLN THR ASN ALA ALA ALA MET ALA THR THR ARG VAL SEQRES 30 B 461 THR ILE LEU THR GLY ARG ARG MET THR ASP LEU VAL LEU SEQRES 31 B 461 PRO ALA ALA VAL PRO MET GLU THR TYR ILE ASP ASP THR SEQRES 32 B 461 VAL ALA VAL LEU SER GLU VAL LEU GLU ASP THR PRO ALA SEQRES 33 B 461 ASP VAL LEU GLY GLY PHE ASP PHE THR ALA GLN GLY VAL SEQRES 34 B 461 TRP ALA PHE ALA ARG PRO GLY SER PRO PRO LEU LYS LEU SEQRES 35 B 461 ASP GLN SER LEU ASP ASP ALA GLY VAL VAL ASP GLY SER SEQRES 36 B 461 LEU LEU THR LEU VAL SER HET GLC C 1 12 HET GLC C 2 11 HET GLC D 1 12 HET GLC D 2 11 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 3 GLC 4(C6 H12 O6) FORMUL 5 HOH *418(H2 O) HELIX 1 1 GLY A 17 GLY A 33 1 17 HELIX 2 2 LYS A 43 THR A 54 1 12 HELIX 3 3 ARG A 67 SER A 74 1 8 HELIX 4 4 ASP A 83 ASP A 88 1 6 HELIX 5 5 TYR A 91 VAL A 98 1 8 HELIX 6 6 THR A 129 GLU A 131 5 3 HELIX 7 7 GLU A 132 ALA A 142 1 11 HELIX 8 8 GLU A 154 ASP A 165 1 12 HELIX 9 9 ASN A 186 ASN A 202 1 17 HELIX 10 10 ASP A 210 LYS A 220 1 11 HELIX 11 11 GLY A 229 TRP A 231 5 3 HELIX 12 12 ALA A 232 SER A 239 1 8 HELIX 13 13 ASN A 273 TYR A 284 1 12 HELIX 14 14 THR A 287 LYS A 298 1 12 HELIX 15 15 LEU A 305 ALA A 313 1 9 HELIX 16 16 ASP A 315 GLY A 328 1 14 HELIX 17 17 GLN A 336 SER A 353 1 18 HELIX 18 18 THR A 357 ALA A 370 1 14 HELIX 19 19 PRO A 395 THR A 398 5 4 HELIX 20 20 TYR A 399 LEU A 411 1 13 HELIX 21 21 PRO A 415 GLY A 420 1 6 HELIX 22 22 GLY B 17 GLY B 33 1 17 HELIX 23 23 LYS B 43 THR B 54 1 12 HELIX 24 24 ARG B 67 SER B 74 1 8 HELIX 25 25 ASP B 83 ASP B 88 1 6 HELIX 26 26 TYR B 91 VAL B 98 1 8 HELIX 27 27 GLU B 132 LYS B 143 1 12 HELIX 28 28 GLU B 154 PHE B 157 5 4 HELIX 29 29 THR B 158 ASP B 165 1 8 HELIX 30 30 ASN B 186 ASN B 202 1 17 HELIX 31 31 ASP B 210 LYS B 220 1 11 HELIX 32 32 GLY B 229 TRP B 231 5 3 HELIX 33 33 ALA B 232 SER B 239 1 8 HELIX 34 34 ASN B 273 TYR B 284 1 12 HELIX 35 35 THR B 287 LYS B 298 1 12 HELIX 36 36 LEU B 305 ALA B 313 1 9 HELIX 37 37 ASP B 315 GLY B 328 1 14 HELIX 38 38 GLN B 336 GLY B 354 1 19 HELIX 39 39 THR B 357 ALA B 371 1 15 HELIX 40 40 PRO B 395 THR B 398 5 4 HELIX 41 41 TYR B 399 GLU B 412 1 14 HELIX 42 42 PRO B 415 GLY B 420 1 6 SHEET 1 A 6 LYS A 35 GLU A 39 0 SHEET 2 A 6 LYS A 7 TRP A 11 1 N ILE A 10 O GLU A 39 SHEET 3 A 6 ILE A 60 ALA A 64 1 O PHE A 62 N TRP A 11 SHEET 4 A 6 PHE A 259 ILE A 267 -1 O GLY A 266 N ILE A 61 SHEET 5 A 6 TYR A 107 GLU A 112 -1 N TYR A 107 O ALA A 265 SHEET 6 A 6 ALA A 302 VAL A 303 -1 O ALA A 302 N VAL A 111 SHEET 1 B 5 LYS A 35 GLU A 39 0 SHEET 2 B 5 LYS A 7 TRP A 11 1 N ILE A 10 O GLU A 39 SHEET 3 B 5 ILE A 60 ALA A 64 1 O PHE A 62 N TRP A 11 SHEET 4 B 5 PHE A 259 ILE A 267 -1 O GLY A 266 N ILE A 61 SHEET 5 B 5 GLU A 329 ILE A 330 1 O GLU A 329 N VAL A 260 SHEET 1 C 2 ARG A 99 TYR A 100 0 SHEET 2 C 2 LYS A 103 LEU A 104 -1 O LYS A 103 N TYR A 100 SHEET 1 D 4 SER A 146 LEU A 148 0 SHEET 2 D 4 THR A 223 ASN A 228 1 O ALA A 224 N SER A 146 SHEET 3 D 4 SER A 115 ASN A 119 -1 N ILE A 117 O THR A 226 SHEET 4 D 4 TYR A 243 THR A 246 -1 O THR A 246 N LEU A 116 SHEET 1 E 2 TYR A 168 GLU A 173 0 SHEET 2 E 2 LYS A 176 GLY A 183 -1 O ASP A 178 N LYS A 171 SHEET 1 F 4 ARG A 384 PRO A 391 0 SHEET 2 F 4 THR A 374 THR A 381 -1 N ILE A 379 O THR A 386 SHEET 3 F 4 LEU A 456 VAL A 460 1 O LEU A 457 N LEU A 380 SHEET 4 F 4 ALA A 431 ALA A 433 -1 N ALA A 433 O THR A 458 SHEET 1 G 6 LYS B 35 GLU B 39 0 SHEET 2 G 6 LYS B 7 TRP B 11 1 N LEU B 8 O THR B 37 SHEET 3 G 6 ILE B 60 ALA B 64 1 O PHE B 62 N TRP B 11 SHEET 4 G 6 PHE B 259 ILE B 267 -1 O GLY B 266 N ILE B 61 SHEET 5 G 6 TYR B 107 GLU B 112 -1 N GLU B 112 O GLY B 261 SHEET 6 G 6 ALA B 302 VAL B 303 -1 O ALA B 302 N VAL B 111 SHEET 1 H 5 LYS B 35 GLU B 39 0 SHEET 2 H 5 LYS B 7 TRP B 11 1 N LEU B 8 O THR B 37 SHEET 3 H 5 ILE B 60 ALA B 64 1 O PHE B 62 N TRP B 11 SHEET 4 H 5 PHE B 259 ILE B 267 -1 O GLY B 266 N ILE B 61 SHEET 5 H 5 GLU B 329 ILE B 330 1 O GLU B 329 N VAL B 260 SHEET 1 I 2 ARG B 99 TYR B 100 0 SHEET 2 I 2 LYS B 103 LEU B 104 -1 O LYS B 103 N TYR B 100 SHEET 1 J 4 SER B 146 LEU B 148 0 SHEET 2 J 4 THR B 223 ASN B 228 1 O ALA B 224 N SER B 146 SHEET 3 J 4 SER B 115 ASN B 119 -1 N ILE B 117 O THR B 226 SHEET 4 J 4 TYR B 243 THR B 246 -1 O THR B 246 N LEU B 116 SHEET 1 K 2 TYR B 168 GLU B 173 0 SHEET 2 K 2 LYS B 176 GLY B 183 -1 O ASP B 178 N LYS B 171 SHEET 1 L 4 ARG B 384 PRO B 391 0 SHEET 2 L 4 THR B 374 THR B 381 -1 N VAL B 377 O LEU B 388 SHEET 3 L 4 LEU B 456 VAL B 460 1 O LEU B 457 N THR B 378 SHEET 4 L 4 ALA B 431 ALA B 433 -1 N ALA B 433 O THR B 458 LINK O4 GLC C 1 C1 GLC C 2 1555 1555 1.41 LINK O4 GLC D 1 C1 GLC D 2 1555 1555 1.42 CRYST1 125.680 125.680 124.490 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007957 0.004594 0.000000 0.00000 SCALE2 0.000000 0.009188 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008033 0.00000